pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GDNF   
Synonyms ATF, ATF1, ATF2, HFB1-GDNF, HSCR3
Description glial cell derived neurotrophic factor
Transcript NM_000514   
Other Transcripts NM_001190468 , NM_001190469 , NM_199231   
Expression
Putative miRNA Targets on GDNF
3'UTR of GDNF
(miRNA target sites are highlighted)
>GDNF|NM_000514|3'UTR
   1 CTCCGGCTCCAGAGACTGCTGTGTATTGCATTCCTGCTACAGTGCAAAGAAAGGGACCAAGGTTCCCAGGAAATGTTTGC
  81 CCAGAATGGAAGATGAGGACCAAGGAGGCGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
 161 GGAAGGCAGCCATCATGGGAGCCTGGTAGAGGGAGATCCAGCTACAGACAACTGGACAGGAGAGAGAGAAAACAGCCCTC
 241 TGGATTCTCCAGGATGGCAGCCGATGTCACTAGAAGCTCAGGGCTGATGTTCCTGGTTGGCTATTGCCACCATTTCAGCT
 321 GATACAGTCCACCATCACTGATTACCGGCGCGGTTGCGGTGGATGCACTTGAACCAAACCAGTGTATCTCCTGTGATTTG
 401 TTTTCATGTGTCCGAAGACACCAGGGAAACAGAGATCCTGGTGTTGTTCCTTGTTATTACGTTTTACTGCTGAAAGTAAG
 481 AGGTTTATTTTTCTGTCACTCAGTGGAGACATACCCTGGAAAGGAGAGGGGAAAAAAAAAGCAAAGATACAAGAGATAAT
 561 CACCTTTGCATTTGAAAGTTGAGGCCCGAGGTTTACTACAACCAGCATTTTTGCCAACGGTTGGTGATTGATTTCCATCA
 641 CGGTGTGTGGGGTGGGAAGAAGTTGGCTAGGAACCAAAAAGGCTGTGCTCATGATTAAACACAAACCTGAAGGTATTTCC
 721 TTTATGTCCTTGGAAACAGGAAACGAGTTGTGGTTTTCGCCAGCATTCTTGTAGGAGAGAATCGGGGAAGGCCCCGAACT
 801 GCCCCCGGGCAGGGAGAGCCCCTCAGGCCTGTTGGTTTACAGAGAGACAGATGTTACATAACCAGCTCCGTTGATGCGTG
 881 GTCACCAGTGACCAGAGAAGCTACTCGATGCAATGCATCTGTTTCAGATACAGAAATATAGAGAAGATATTTATTGAAAT
 961 TTAAGTTATTGTTATTTATTACCGTTCACTAATGAATTTCTCTTTTTTCCCTTATTTATTAAAGTTTCTTTTCAAAGGTG
1041 CCAAAGTATATGTGCTCGCAAAATGCAAAGAAAGGTGACAAAAGGAAATTTGAATTGGGAACAAGGGTCCATGCTTTTCA
1121 AAGTATTAAAAAGTTTTTTGCCAGGCAAAAATCACTTACTTTACCTTTTTAAGAAAATTTGTCATTAATTTTCCCCAGAT
1201 TTCAGCATTTTTCCCAATTTTTATTTGTGGAGCATCTCAGGCAAGCCCCCTTTCCTGGAGCAGCGTGCAGAGACCACTGG
1281 CACTTGACTTTATTTCTTCCTTGCTCCATTGCTGAACAGAAATGTCGTGGGCTCCACTTCCTGTTGTCTTTAAGCTCTTA
1361 GTCCCCTCCACGTATACCTATCTGTACTATGCATAACCATATGTAGAAAAGGTTCAGTTCCTTTTAGTAGGTAGTCCTGG
1441 ATTTAATGCTGACCTAAAAGTAATGTCGACAATGCTGTCAGGTAGCTGCCGTTCTACCGACTCCCTCCATCCCTGCCCAC
1521 CCACTGCCCTCCCGAGAATATGCTGGCTGCCCAGTGCAGCCCGGGAGACACAGGGGCCTTCCAGAGGTAGGGTCTACCAG
1601 GTCCTGTACAACCCCTGGGCTGTCACCGGGGGTCAACAGCTGCTGCTCCTATATACCCAAACACCTGACAGCTCCCTGGG
1681 GAGCAGATGGCTGAGAAGGGTGCTGAGGAAGCCATATTGGGACCAGCCACAGCCACACACATGGAGCCTCATACTTAGGA
1761 GCGTGCTGCCTTTAAATGAAGGTGGTCGGGGCCAGTGCAGCGGCTCACACCCATAATCCCAACACTTTGGAAAGCCAAGG
1841 TGGGAGGATCTCTTGAACCCAGGAGTTTGAGACCAGCTTGGGCAACATAGGGAGACCCTGTCTCTACAGAAACTTTAAAA
1921 ATTAGGCAGGCATGATGGTGCACACCTGTGGTCCCAGCTACTCAAGAGGCTGAAGGAGGATCACTTGAGTCCAGAAGGTC
2001 GAGGCTGCAGTGAGCTGTGATCATGCCACTGCACTCCAGCCTAAGTGACAGTGCGGTACCCTGTCTCAAAAAAAAAAAAA
2081 AAAAAAAAAAGAGGTTGGAGCAGGAGGAAGCATAGGGGCGGGAACAGCCACCTCCTCCATGCCCTAGATTGTGAATTTAT
2161 CGGGCAGCCAACACATGTATGACACACTAGGCCCTGTATTACAGCTTGTTACGCATTTCATAAAAGGGATTTTCATTAAG
2241 GAGATAATCTATTACTACCTACCTTAGTGGCTACTAGTATAAAACTATGACAGATTTAGCAATTAAATGAAATACTGGCC
2321 TCCATCAAATAATCATAGTAACAAGAAGCAGCAGTTACCAGACATCTGATCCCCTTCCCCCAAAATACCCAAATTCTTCA
2401 TGGTTCTGCCCTTCTCTGTCCTTTCTGCTCCCCTTGCTCGCCTGGGAAATGGAGGAAAGGCCTTCCCTCTCACACTGTCT
2481 TGGGATCTTGCTGAGAATTCAGACTGCTCGAAACAGTGACAAACCCCAGCCATCCAGTCATTCGTGGAGCACAATTTGGA
2561 TGTGGCCCCAGGGGCATCTGTCCCATTCAGAGAACCTTGGCAGTGCGATGGCCACTGTTCCCAGGCTTCAACCTCAGTGA
2641 CCCCCCCCAACAACTCCCCATGGAGAGTCCCTGCCCAAAAAAGCTGTAGGATCCAAGGGGTGTCAATAGCTCGTTCCCGG
2721 CATCACCTACACACCACAAGCAGGTTTTAATGGAAGCAAGTTGCTCCACCAAATCCACAAAAGGGTAAAGTTTGTGATTT
2801 TTCTTTATCATTGCGATCACCATCTGATACCGTAAGGAGTGCACTTGTTTGGAAGTTCTGACTTCTCTGATCTGTCTTGG
2881 TCGTTTGTGTTATAAAACCAAAGTTCTCTACAGACTTTATTTTTGTACAATATCATTTTGTAACTTTTTACAAATAAAAA
2961 CTCATTTCTATTGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCU-ACGUUUAAAau 5'
            || || ||::|||||  
Target 5' ccCTAGATTGTGAATTTat 3'
2142 - 2160 124.00 -5.80
2
miRNA  3' aggaccUACGUUUAAAAu 5'
                | |||::|||| 
Target 5' caccacAAGCAGGTTTTa 3'
2732 - 2749 120.00 -8.30
3
miRNA  3' aggACCUACGU-UUAAAau 5'
             |||| ||| |||||  
Target 5' tcgTGGA-GCACAATTTgg 3'
2542 - 2559 110.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
667238 5 ClinVar
353519 93 ClinVar
905627 116 ClinVar
905626 131 ClinVar
353518 134 ClinVar
353517 164 ClinVar
905625 235 ClinVar
353516 346 ClinVar
353515 363 ClinVar
903709 450 ClinVar
353514 529 ClinVar
353513 532 ClinVar
903708 617 ClinVar
353512 717 ClinVar
903707 795 ClinVar
353511 807 ClinVar
353510 907 ClinVar
353509 912 ClinVar
353508 958 ClinVar
353507 988 ClinVar
353506 1004 ClinVar
353505 1141 ClinVar
907078 1199 ClinVar
353504 1244 ClinVar
907077 1246 ClinVar
353503 1264 ClinVar
353502 1276 ClinVar
353501 1331 ClinVar
906074 1360 ClinVar
906073 1375 ClinVar
353500 1389 ClinVar
353499 1406 ClinVar
906072 1433 ClinVar
353498 1534 ClinVar
905567 1540 ClinVar
353497 1541 ClinVar
353496 1587 ClinVar
353495 1592 ClinVar
353494 1605 ClinVar
353493 1612 ClinVar
353492 1627 ClinVar
353491 1651 ClinVar
353490 1657 ClinVar
353489 1693 ClinVar
904777 1699 ClinVar
353488 1713 ClinVar
904776 1782 ClinVar
353487 1785 ClinVar
353486 1788 ClinVar
353485 1898 ClinVar
353484 1927 ClinVar
353483 2014 ClinVar
353482 2059 ClinVar
353481 2068 ClinVar
907022 2119 ClinVar
907021 2150 ClinVar
353480 2162 ClinVar
353479 2204 ClinVar
906003 2213 ClinVar
906002 2265 ClinVar
906001 2267 ClinVar
906000 2318 ClinVar
353478 2440 ClinVar
905999 2446 ClinVar
353477 2556 ClinVar
353476 2643 ClinVar
905489 2646 ClinVar
353475 2651 ClinVar
353474 2713 ClinVar
353473 2828 ClinVar
353472 2831 ClinVar
353471 2883 ClinVar
COSN228648 4 COSMIC
COSN19728577 109 COSMIC
COSN30693272 110 COSMIC
COSN20049904 112 COSMIC
COSN9434931 122 COSMIC
COSN28943928 128 COSMIC
COSN6511621 131 COSMIC
COSN8224741 416 COSMIC
COSN16924782 618 COSMIC
COSN8384954 705 COSMIC
COSN31778395 1327 COSMIC
COSN21551978 1439 COSMIC
COSN7940461 1490 COSMIC
COSN8224740 1491 COSMIC
COSN24843294 1605 COSMIC
COSN26577550 1651 COSMIC
COSN26671879 1713 COSMIC
COSN26671549 1714 COSMIC
COSN14167918 1762 COSMIC
COSN7940460 1788 COSMIC
COSN28029443 1838 COSMIC
COSN9434930 1975 COSMIC
COSN16911971 1994 COSMIC
COSN15265613 2055 COSMIC
COSN8224739 2162 COSMIC
COSN20518376 2444 COSMIC
COSN32061056 2828 COSMIC
COSN27200325 2829 COSMIC
COSN20765815 2902 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753592470 2 dbSNP
rs765915825 4 dbSNP
rs145996577 5 dbSNP
rs1457525534 7 dbSNP
rs1306381751 13 dbSNP
rs1467727208 15 dbSNP
rs1161519535 17 dbSNP
rs749887214 18 dbSNP
rs764617766 25 dbSNP
rs763387496 29 dbSNP
rs775849560 36 dbSNP
rs770256327 39 dbSNP
rs1330884755 41 dbSNP
rs764521758 42 dbSNP
rs1471967869 46 dbSNP
rs1248929088 49 dbSNP
rs1235135637 57 dbSNP
rs975685452 59 dbSNP
rs944493852 62 dbSNP
rs907626843 63 dbSNP
rs983325701 69 dbSNP
rs1330355530 73 dbSNP
rs1242055063 75 dbSNP
rs951956149 78 dbSNP
rs1036491605 81 dbSNP
rs45535335 93 dbSNP
rs560077980 102 dbSNP
rs984262092 104 dbSNP
rs1167360554 109 dbSNP
rs376098758 110 dbSNP
rs1434827962 113 dbSNP
rs1427829927 118 dbSNP
rs11952258 122 dbSNP
rs13178132 125 dbSNP
rs1233886032 126 dbSNP
rs11952257 128 dbSNP
rs1425912357 129 dbSNP
rs1482164703 130 dbSNP
rs1259576454 131 dbSNP
rs1398294852 131 dbSNP
rs1466162764 131 dbSNP
rs868643238 131 dbSNP
rs931512760 132 dbSNP
rs1251392885 133 dbSNP
rs886060603 134 dbSNP
rs574469451 136 dbSNP
rs926872946 137 dbSNP
rs1279977075 139 dbSNP
rs1280627866 140 dbSNP
rs1217466325 143 dbSNP
rs1217428135 144 dbSNP
rs1344031917 150 dbSNP
rs1255767583 152 dbSNP
rs1288683145 156 dbSNP
rs1230024316 157 dbSNP
rs1348193492 159 dbSNP
rs1307065603 160 dbSNP
rs1212740323 161 dbSNP
rs1448096046 162 dbSNP
rs1360446108 163 dbSNP
rs1196384919 164 dbSNP
rs1256920539 164 dbSNP
rs1361020917 164 dbSNP
rs1483103986 164 dbSNP
rs150577324 164 dbSNP
rs777231466 164 dbSNP
rs1398910349 166 dbSNP
rs1275728200 189 dbSNP
rs1023676494 200 dbSNP
rs1013591730 204 dbSNP
rs1369332672 210 dbSNP
rs981068338 211 dbSNP
rs896597971 216 dbSNP
rs1311985204 226 dbSNP
rs1024989592 230 dbSNP
rs1031490841 231 dbSNP
rs988610131 247 dbSNP
rs1332765191 262 dbSNP
rs138074154 263 dbSNP
rs904038862 271 dbSNP
rs537204707 273 dbSNP
rs1414332820 276 dbSNP
rs1000692685 278 dbSNP
rs888991758 285 dbSNP
rs1413365989 290 dbSNP
rs1160235526 292 dbSNP
rs1380890992 295 dbSNP
rs576329269 296 dbSNP
rs1043861797 298 dbSNP
rs1028896890 325 dbSNP
rs1436499934 333 dbSNP
rs997471865 338 dbSNP
rs558003481 339 dbSNP
rs932243767 343 dbSNP
rs753233921 346 dbSNP
rs1036030610 347 dbSNP
rs1355099051 348 dbSNP
rs1040055321 349 dbSNP
rs371311257 350 dbSNP
rs944357950 351 dbSNP
rs767561340 352 dbSNP
rs759593973 356 dbSNP
rs940399996 357 dbSNP
rs1047945291 358 dbSNP
rs1238592135 360 dbSNP
rs45611434 363 dbSNP
rs1156755805 368 dbSNP
rs1268723805 371 dbSNP
rs1405512114 380 dbSNP
rs1229963405 381 dbSNP
rs1391898258 382 dbSNP
rs1448493086 384 dbSNP
rs1326874312 402 dbSNP
rs1287308670 413 dbSNP
rs565976844 414 dbSNP
rs979925306 419 dbSNP
rs1378141996 421 dbSNP
rs1294312831 424 dbSNP
rs1441865294 429 dbSNP
rs1278303524 430 dbSNP
rs1359076665 433 dbSNP
rs970004881 434 dbSNP
rs771093670 436 dbSNP
rs1289198731 437 dbSNP
rs567404383 441 dbSNP
rs141395105 450 dbSNP
rs926820676 457 dbSNP
rs992189832 460 dbSNP
rs1457156650 461 dbSNP
rs981400561 461 dbSNP
rs960709756 465 dbSNP
rs1030979770 472 dbSNP
rs949681730 476 dbSNP
rs1455958558 503 dbSNP
rs917873378 508 dbSNP
rs1000021131 511 dbSNP
rs968124835 518 dbSNP
rs956727715 524 dbSNP
rs58787312 529 dbSNP
rs1170967822 531 dbSNP
rs1399015426 532 dbSNP
rs886060602 532 dbSNP
rs768422735 534 dbSNP
rs747010935 536 dbSNP
rs1449435180 540 dbSNP
rs1293159175 541 dbSNP
rs1353656217 541 dbSNP
rs141260125 541 dbSNP
rs779970703 549 dbSNP
rs886121103 551 dbSNP
rs1338967728 556 dbSNP
rs550010329 564 dbSNP
rs1463373492 568 dbSNP
rs1280436857 578 dbSNP
rs1004547437 579 dbSNP
rs1209364657 588 dbSNP
rs1255249762 588 dbSNP
rs1267184571 594 dbSNP
rs531488326 599 dbSNP
rs1422553818 603 dbSNP
rs1474211667 607 dbSNP
rs920356737 617 dbSNP
rs1001250542 618 dbSNP
rs1323099373 619 dbSNP
rs1044277580 623 dbSNP
rs948524605 624 dbSNP
rs570775487 635 dbSNP
rs778458794 641 dbSNP
rs992763101 648 dbSNP
rs955944487 650 dbSNP
rs1433618896 655 dbSNP
rs1225560132 656 dbSNP
rs1276782748 657 dbSNP
rs1345470932 666 dbSNP
rs1233212943 676 dbSNP
rs1278195348 681 dbSNP
rs1489225017 691 dbSNP
rs757008724 692 dbSNP
rs1365113003 696 dbSNP
rs1444725471 713 dbSNP
rs753516612 717 dbSNP
rs778339528 720 dbSNP
rs968575503 728 dbSNP
rs1053155559 740 dbSNP
rs1022360552 743 dbSNP
rs1173387856 744 dbSNP
rs1459794592 745 dbSNP
rs1422024691 747 dbSNP
rs1299301626 750 dbSNP
rs1384376703 751 dbSNP
rs571086883 759 dbSNP
rs935301614 763 dbSNP
rs1439974694 765 dbSNP
rs1164402693 776 dbSNP
rs1355822171 782 dbSNP
rs552533182 784 dbSNP
rs1260011803 787 dbSNP
rs1404697388 790 dbSNP
rs1019045440 791 dbSNP
rs187004493 795 dbSNP
rs1447520238 796 dbSNP
rs1267681877 805 dbSNP
rs559938080 806 dbSNP
rs886060601 807 dbSNP
rs1251556592 808 dbSNP
rs1441877362 809 dbSNP
rs1159800979 810 dbSNP
rs541798282 810 dbSNP
rs979483674 814 dbSNP
rs1451805348 819 dbSNP
rs1191517771 823 dbSNP
rs1391793167 843 dbSNP
rs1440411325 845 dbSNP
rs1047892326 851 dbSNP
rs994497823 859 dbSNP
rs953444400 860 dbSNP
rs921725854 866 dbSNP
rs1447158933 870 dbSNP
rs1306280868 874 dbSNP
rs148326940 877 dbSNP
rs562194952 878 dbSNP
rs898941515 879 dbSNP
rs966308063 881 dbSNP
rs1342255623 893 dbSNP
rs1276073483 899 dbSNP
rs1225568238 901 dbSNP
rs1044182009 906 dbSNP
rs751619765 907 dbSNP
rs1178138401 911 dbSNP
rs886060600 912 dbSNP
rs1004785373 926 dbSNP
rs34851372 934 dbSNP
rs951685723 941 dbSNP
rs1388861466 950 dbSNP
rs886060599 958 dbSNP
rs1365998896 965 dbSNP
rs1027294068 981 dbSNP
rs895655898 983 dbSNP
rs543627911 984 dbSNP
rs79669773 988 dbSNP
rs905628087 1003 dbSNP
rs79370077 1004 dbSNP
rs1394296480 1007 dbSNP
rs1397746435 1008 dbSNP
rs1372399309 1009 dbSNP
rs1176767482 1010 dbSNP
rs537512382 1011 dbSNP
rs1313280916 1013 dbSNP
rs1265090935 1014 dbSNP
rs978521739 1015 dbSNP
rs1198432379 1018 dbSNP
rs1483147125 1021 dbSNP
rs1354284383 1043 dbSNP
rs80151972 1048 dbSNP
rs896672842 1057 dbSNP
rs1052691146 1058 dbSNP
rs935584611 1073 dbSNP
rs1251080492 1074 dbSNP
rs1257079687 1076 dbSNP
rs915211855 1084 dbSNP
rs1236153730 1085 dbSNP
rs1310960530 1094 dbSNP
rs1479841971 1096 dbSNP
rs1202714375 1097 dbSNP
rs572698379 1101 dbSNP
rs1474957908 1106 dbSNP
rs1185879091 1109 dbSNP
rs1300948321 1111 dbSNP
rs190653599 1124 dbSNP
rs1169960357 1134 dbSNP
rs1352519936 1135 dbSNP
rs866219669 1138 dbSNP
rs1303363056 1141 dbSNP
rs2972929 1141 dbSNP
rs1412449511 1142 dbSNP
rs763213425 1144 dbSNP
rs1409261860 1151 dbSNP
rs1213664031 1164 dbSNP
rs1292941800 1171 dbSNP
rs1306127285 1171 dbSNP
rs932002197 1178 dbSNP
rs1281735911 1181 dbSNP
rs1303357758 1185 dbSNP
rs568465395 1188 dbSNP
rs1485616996 1192 dbSNP
rs77668737 1199 dbSNP
rs1265465865 1207 dbSNP
rs1375874540 1219 dbSNP
rs1175387277 1234 dbSNP
rs886060598 1244 dbSNP
rs565833757 1246 dbSNP
rs1417563367 1247 dbSNP
rs951060257 1253 dbSNP
rs1413678916 1260 dbSNP
rs1179636629 1262 dbSNP
rs62360370 1264 dbSNP
rs995471602 1265 dbSNP
rs907714044 1269 dbSNP
rs142426358 1276 dbSNP
rs1345299401 1281 dbSNP
rs1286820244 1283 dbSNP
rs1263094233 1287 dbSNP
rs951968634 1291 dbSNP
rs1209718902 1292 dbSNP
rs1022599092 1310 dbSNP
rs552396877 1313 dbSNP
rs749342707 1316 dbSNP
rs1232783000 1318 dbSNP
rs1288695271 1322 dbSNP
rs979731563 1323 dbSNP
rs760457781 1326 dbSNP
rs181390144 1327 dbSNP
rs886060597 1331 dbSNP
rs1194079715 1332 dbSNP
rs1252168567 1337 dbSNP
rs1452295472 1339 dbSNP
rs1024042701 1347 dbSNP
rs1057027312 1371 dbSNP
rs1031606909 1372 dbSNP
rs566717310 1375 dbSNP
rs1461662929 1377 dbSNP
rs756787604 1380 dbSNP
rs1370724105 1386 dbSNP
rs1439088241 1387 dbSNP
rs78613670 1389 dbSNP
rs1374686311 1392 dbSNP
rs745759425 1397 dbSNP
rs1223329979 1400 dbSNP
rs1390640769 1404 dbSNP
rs528922361 1406 dbSNP
rs1323526346 1409 dbSNP
rs770549436 1412 dbSNP
rs943488738 1440 dbSNP
rs911959809 1441 dbSNP
rs566649455 1446 dbSNP
rs988076061 1447 dbSNP
rs1233430624 1449 dbSNP
rs1469546893 1455 dbSNP
rs950929142 1467 dbSNP
rs1175363680 1472 dbSNP
rs931949717 1476 dbSNP
rs1475211534 1477 dbSNP
rs1026876170 1478 dbSNP
rs749015438 1481 dbSNP
rs1163779320 1482 dbSNP
rs900530118 1490 dbSNP
rs867689217 1491 dbSNP
rs1368707730 1492 dbSNP
rs1355675923 1494 dbSNP
rs760361491 1498 dbSNP
rs1188970437 1499 dbSNP
rs1371208270 1515 dbSNP
rs1278249674 1517 dbSNP
rs963590839 1521 dbSNP
rs1421588178 1533 dbSNP
rs886060596 1534 dbSNP
rs138502514 1541 dbSNP
rs1332920671 1545 dbSNP
rs1466526956 1549 dbSNP
rs1266557508 1552 dbSNP
rs1200360616 1555 dbSNP
rs895590800 1556 dbSNP
rs543940106 1562 dbSNP
rs998982139 1563 dbSNP
rs1202363095 1564 dbSNP
rs1239073132 1566 dbSNP
rs920509817 1573 dbSNP
rs980012518 1577 dbSNP
rs903032717 1586 dbSNP
rs886060595 1587 dbSNP
rs375859036 1590 dbSNP
rs546517198 1592 dbSNP
rs1242665798 1593 dbSNP
rs1011498705 1594 dbSNP
rs1478584685 1601 dbSNP
rs564388690 1602 dbSNP
rs1168085062 1603 dbSNP
rs899751283 1604 dbSNP
rs3749692 1605 dbSNP
rs200969412 1612 dbSNP
rs1377780850 1613 dbSNP
rs1031458275 1618 dbSNP
rs1312331597 1622 dbSNP
rs1353593662 1623 dbSNP
rs748498805 1627 dbSNP
rs904043405 1628 dbSNP
rs1239472256 1631 dbSNP
rs1338521023 1632 dbSNP
rs781582573 1633 dbSNP
rs1282469429 1635 dbSNP
rs1485939929 1642 dbSNP
rs1318240084 1645 dbSNP
rs1254802593 1646 dbSNP
rs1051878013 1648 dbSNP
rs11111 1651 dbSNP
rs1390962853 1652 dbSNP
rs996844389 1655 dbSNP
rs541881147 1656 dbSNP
rs886060594 1657 dbSNP
rs1397488549 1664 dbSNP
rs1435912722 1666 dbSNP
rs900476741 1675 dbSNP
rs1173521905 1681 dbSNP
rs1040778372 1683 dbSNP
rs919442110 1689 dbSNP
rs374825523 1690 dbSNP
rs188617599 1693 dbSNP
rs963555970 1697 dbSNP
rs200330062 1699 dbSNP
rs1015617127 1708 dbSNP
rs916146097 1710 dbSNP
rs886060593 1713 dbSNP
rs1305328059 1717 dbSNP
rs1005125379 1722 dbSNP
rs144538407 1725 dbSNP
rs1348264161 1742 dbSNP
rs1233515068 1744 dbSNP
rs556575483 1751 dbSNP
rs1278013996 1757 dbSNP
rs1352231897 1761 dbSNP
rs538387510 1762 dbSNP
rs577405600 1763 dbSNP
rs1444904467 1764 dbSNP
rs1200493035 1767 dbSNP
rs1035741263 1776 dbSNP
rs998616288 1778 dbSNP
rs147083416 1782 dbSNP
rs979962420 1784 dbSNP
rs115322727 1785 dbSNP
rs199775384 1787 dbSNP
rs886060592 1788 dbSNP
rs149012858 1791 dbSNP
rs750653484 1795 dbSNP
rs1208350858 1796 dbSNP
rs548428619 1799 dbSNP
rs145848373 1801 dbSNP
rs899791064 1802 dbSNP
rs924336732 1805 dbSNP
rs1039612423 1806 dbSNP
rs1337455149 1810 dbSNP
rs1022490029 1811 dbSNP
rs996403481 1813 dbSNP
rs1259657997 1814 dbSNP
rs1268384116 1817 dbSNP
rs1008078517 1818 dbSNP
rs965338577 1823 dbSNP
rs1273363997 1831 dbSNP
rs890459008 1843 dbSNP
rs886466471 1855 dbSNP
rs568543354 1863 dbSNP
rs1363329388 1867 dbSNP
rs1325112348 1873 dbSNP
rs1468605712 1874 dbSNP
rs1167385253 1876 dbSNP
rs1395474551 1888 dbSNP
rs1460784592 1892 dbSNP
rs547628776 1898 dbSNP
rs1398305391 1900 dbSNP
rs1391930343 1903 dbSNP
rs1364591925 1910 dbSNP
rs898982193 1913 dbSNP
rs1234581138 1922 dbSNP
rs886060591 1927 dbSNP
rs765390997 1930 dbSNP
rs1233110569 1943 dbSNP
rs1037895741 1946 dbSNP
rs1057070384 1958 dbSNP
rs878873257 1958 dbSNP
rs1478556259 1963 dbSNP
rs1250354709 1969 dbSNP
rs1379663682 1970 dbSNP
rs1197215168 1976 dbSNP
rs1418895472 1982 dbSNP
rs1490233453 1985 dbSNP
rs934306077 1992 dbSNP
rs942162199 1993 dbSNP
rs149881166 1994 dbSNP
rs1297599874 1998 dbSNP
rs916052708 2000 dbSNP
rs370174553 2001 dbSNP
rs924286132 2009 dbSNP
rs1482142763 2010 dbSNP
rs1354214868 2012 dbSNP
rs530864008 2014 dbSNP
rs960237435 2025 dbSNP
rs928326839 2027 dbSNP
rs977482220 2029 dbSNP
rs1345635590 2033 dbSNP
rs4869551 2041 dbSNP
rs4869550 2054 dbSNP
rs1340614131 2055 dbSNP
rs886060590 2059 dbSNP
rs1485350134 2061 dbSNP
rs1180353746 2063 dbSNP
rs1264108158 2063 dbSNP
rs1210797935 2065 dbSNP
rs1460110200 2066 dbSNP
rs79582724 2067 dbSNP
rs869091796 2068 dbSNP
rs886060589 2068 dbSNP
rs1174140568 2069 dbSNP
rs1374322938 2069 dbSNP
rs76445038 2071 dbSNP
rs1412316824 2081 dbSNP
rs1411107960 2085 dbSNP
rs1352327584 2086 dbSNP
rs1327604420 2087 dbSNP
rs1415484578 2088 dbSNP
rs1405007023 2089 dbSNP
rs1208107151 2091 dbSNP
rs1237152273 2091 dbSNP
rs1265310216 2091 dbSNP
rs1281601739 2091 dbSNP
rs1290321663 2091 dbSNP
rs1295273580 2091 dbSNP
rs1347324585 2091 dbSNP
rs1362217655 2091 dbSNP
rs1363424961 2091 dbSNP
rs1383162545 2091 dbSNP
rs1491026936 2091 dbSNP
rs200800004 2091 dbSNP
rs386403607 2091 dbSNP
rs71604877 2091 dbSNP
rs145859706 2092 dbSNP
rs1347772488 2093 dbSNP
rs1318047305 2094 dbSNP
rs865977173 2098 dbSNP
rs868720361 2099 dbSNP
rs1386927778 2104 dbSNP
rs1443554213 2112 dbSNP
rs562221215 2113 dbSNP
rs1304899913 2114 dbSNP
rs1370866634 2115 dbSNP
rs1217596009 2118 dbSNP
rs186253947 2119 dbSNP
rs975309299 2120 dbSNP
rs1215334986 2121 dbSNP
rs1018025274 2122 dbSNP
rs964947450 2123 dbSNP
rs1019596340 2130 dbSNP
rs1008106645 2131 dbSNP
rs1476986457 2139 dbSNP
rs1178826749 2143 dbSNP
rs71619884 2144 dbSNP
rs1240391343 2147 dbSNP
rs181589663 2150 dbSNP
rs1417946426 2159 dbSNP
rs1026293560 2161 dbSNP
rs17379771 2162 dbSNP
rs1326969656 2167 dbSNP
rs899265388 2172 dbSNP
rs993888889 2174 dbSNP
rs1210931075 2177 dbSNP
rs1044524140 2186 dbSNP
rs759573579 2188 dbSNP
rs1280694868 2189 dbSNP
rs1374161898 2191 dbSNP
rs1227847410 2197 dbSNP
rs72745194 2204 dbSNP
rs1337179729 2211 dbSNP
rs2973051 2213 dbSNP
rs934582881 2215 dbSNP
rs1449612851 2227 dbSNP
rs894650177 2229 dbSNP
rs1042751314 2233 dbSNP
rs140045926 2247 dbSNP
rs1419641177 2263 dbSNP
rs1475344831 2265 dbSNP
rs577631751 2267 dbSNP
rs1413529797 2269 dbSNP
rs575206657 2270 dbSNP
rs1366343804 2274 dbSNP
rs921013533 2276 dbSNP
rs1278391712 2285 dbSNP
rs975214050 2289 dbSNP
rs943520466 2294 dbSNP
rs189476459 2307 dbSNP
rs1415656318 2315 dbSNP
rs1448159003 2317 dbSNP
rs773021483 2318 dbSNP
rs779717017 2329 dbSNP
rs1354069941 2335 dbSNP
rs928876742 2339 dbSNP
rs912077679 2346 dbSNP
rs1335376645 2358 dbSNP
rs977136010 2364 dbSNP
rs988107268 2374 dbSNP
rs945718277 2375 dbSNP
rs1026240209 2378 dbSNP
rs1186796892 2382 dbSNP
rs1472053071 2385 dbSNP
rs544575440 2386 dbSNP
rs1169975163 2390 dbSNP
rs577417175 2400 dbSNP
rs989863793 2408 dbSNP
rs1023456332 2410 dbSNP
rs376712239 2415 dbSNP
rs1377356759 2421 dbSNP
rs963733237 2426 dbSNP
rs558978779 2428 dbSNP
rs1338899354 2430 dbSNP
rs1432699488 2432 dbSNP
rs1388284401 2436 dbSNP
rs986594632 2437 dbSNP
rs955342514 2439 dbSNP
rs78865769 2440 dbSNP
rs1181744132 2454 dbSNP
rs1460818200 2455 dbSNP
rs1199384085 2462 dbSNP
rs1276113575 2475 dbSNP
rs998736455 2476 dbSNP
rs994069921 2477 dbSNP
rs1243084894 2484 dbSNP
rs1268457362 2490 dbSNP
rs1449169894 2491 dbSNP
rs1210378872 2493 dbSNP
rs1314718977 2502 dbSNP
rs897838438 2510 dbSNP
rs1016234405 2514 dbSNP
rs1043035453 2516 dbSNP
rs1400098294 2524 dbSNP
rs1006315753 2525 dbSNP
rs894553866 2526 dbSNP
rs1056011784 2527 dbSNP
rs1319153738 2537 dbSNP
rs1387655805 2541 dbSNP
rs1388327588 2543 dbSNP
rs938829200 2544 dbSNP
rs907341259 2547 dbSNP
rs899526106 2549 dbSNP
rs1272591480 2551 dbSNP
rs886060588 2556 dbSNP
rs1352159717 2561 dbSNP
rs1313549832 2570 dbSNP
rs1452463909 2574 dbSNP
rs1039833371 2576 dbSNP
rs1042382570 2580 dbSNP
rs943823130 2586 dbSNP
rs946282859 2595 dbSNP
rs914233568 2596 dbSNP
rs1255503088 2597 dbSNP
rs989769011 2599 dbSNP
rs942494096 2606 dbSNP
rs910954406 2607 dbSNP
rs1198729259 2611 dbSNP
rs1376003199 2631 dbSNP
rs866336441 2641 dbSNP
rs1159421725 2642 dbSNP
rs146664109 2643 dbSNP
rs1394879005 2645 dbSNP
rs929512571 2646 dbSNP
rs1025450593 2647 dbSNP
rs1407145025 2648 dbSNP
rs1488973628 2649 dbSNP
rs200932153 2649 dbSNP
rs200933642 2649 dbSNP
rs963317246 2649 dbSNP
rs11740337 2650 dbSNP
rs1209783993 2651 dbSNP
rs369707461 2651 dbSNP
rs991942889 2658 dbSNP
rs1182947816 2659 dbSNP
rs781660220 2661 dbSNP
rs536193964 2662 dbSNP
rs962621936 2682 dbSNP
rs998685466 2695 dbSNP
rs1443874308 2706 dbSNP
rs867301650 2709 dbSNP
rs1016306739 2712 dbSNP
rs143311673 2713 dbSNP
rs1484798019 2714 dbSNP
rs1398508687 2716 dbSNP
rs550171967 2718 dbSNP
rs1034419941 2719 dbSNP
rs1002936803 2721 dbSNP
rs780597187 2727 dbSNP
rs1288887841 2730 dbSNP
rs73748994 2734 dbSNP
rs1293467251 2740 dbSNP
rs1039375937 2750 dbSNP
rs943753991 2751 dbSNP
rs890873851 2755 dbSNP
rs1046838008 2756 dbSNP
rs929461891 2784 dbSNP
rs79174336 2790 dbSNP
rs1206435540 2800 dbSNP
rs1251209677 2805 dbSNP
rs1482074339 2808 dbSNP
rs1041855943 2811 dbSNP
rs1010939603 2814 dbSNP
rs1294341080 2815 dbSNP
rs546641171 2822 dbSNP
rs200003002 2828 dbSNP
rs35549586 2829 dbSNP
rs759342127 2829 dbSNP
rs3763044 2830 dbSNP
rs3834828 2830 dbSNP
rs141939066 2831 dbSNP
rs386687302 2831 dbSNP
rs991497155 2831 dbSNP
rs1377947749 2832 dbSNP
rs35669631 2832 dbSNP
rs66667025 2832 dbSNP
rs755685098 2832 dbSNP
rs1172515373 2833 dbSNP
rs1426512146 2836 dbSNP
rs1246913515 2843 dbSNP
rs1311057497 2844 dbSNP
rs942358328 2865 dbSNP
rs1229788662 2871 dbSNP
rs1274472488 2875 dbSNP
rs910857755 2876 dbSNP
rs1340199911 2878 dbSNP
rs77776214 2883 dbSNP
rs1256865408 2889 dbSNP
rs933714573 2893 dbSNP
rs1483062468 2915 dbSNP
rs1198909048 2918 dbSNP
rs1263594044 2919 dbSNP
rs548484451 2933 dbSNP
rs530425233 2944 dbSNP
rs1191571452 2949 dbSNP
rs977533268 2956 dbSNP
rs1455227451 2961 dbSNP
rs752665573 2962 dbSNP
rs146007321 2964 dbSNP
rs967175037 2966 dbSNP
rs918421839 2970 dbSNP
rs1358022324 2972 dbSNP
rs1021486609 2974 dbSNP
rs1450161951 2975 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 2668.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aggaCCUACGUUUAAAAu 5'
              || ||:||||||| 
Target 5' ----GGUUGUAAAUUUUu 3'
1 - 14
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000487334.2 | 3UTR | GGUUGUAAAUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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