pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol ANGEL2   
Synonyms Ccr4d, KIAA0759L
Description angel homolog 2
Transcript NM_144567   
Expression
Putative miRNA Targets on ANGEL2
3'UTR of ANGEL2
(miRNA target sites are highlighted)
>ANGEL2|NM_144567|3'UTR
   1 CTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGT
  81 TGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTAT
 161 AACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGG
 241 TTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATT
 321 TCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCC
 401 AGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGT
 481 ATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCT
 561 TATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAA
 641 AGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAG
 721 CATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAAT
 801 GGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGAT
 881 TACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCT
 961 CGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCA
1041 GCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTT
1121 ATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGC
1201 CTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGG
1281 TTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAG
1361 CAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAG
1441 TAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATT
1521 AATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTAT
1601 TTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAAT
1681 ATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGG
1761 CTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCA
1841 AGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTG
1921 GCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGA
2001 GCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTA
2081 GTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAA
2161 TATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTA
2241 CATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATT
2321 GTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAA
2401 TGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAAT
2481 TATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTA
2561 AATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAACTGTG
2641 GAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCTTTATTTGGAAT
2721 TTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGA
2801 GGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCGTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGU--UUUCAUUAACACCAAAAa 5'
            ||| |  || | |||| ||||||| 
Target 5' ctGTGGAGTAATGAAATTTTGGTTTTa 3'
2636 - 2662 173.00 -11.50
2
miRNA  3' accACGUUU-UCA------UUAAC-ACCAAAAa 5'
             ||:||| |||      || || ||||||| 
Target 5' ctcTGTAAATAGTCATTTAAACTGTTGGTTTTa 3'
1244 - 1276 164.00 -7.20
3
miRNA  3' accaCGUUUUCAUUAACACCAAAAa 5'
              |:|||| |:|  ||| |||| 
Target 5' cctaGTAAAATTGACAGTGATTTTt 3'
256 - 280 141.00 -6.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30627447 4 COSMIC
COSN30474056 31 COSMIC
COSN31561112 43 COSMIC
COSN30534051 52 COSMIC
COSN30510423 70 COSMIC
COSN30132425 73 COSMIC
COSN29512234 163 COSMIC
COSN21239342 491 COSMIC
COSN7984551 1049 COSMIC
COSN25377095 1176 COSMIC
COSN1429688 1308 COSMIC
COSN22918042 1451 COSMIC
COSN5364928 1591 COSMIC
COSN23096993 1604 COSMIC
COSN7201622 1639 COSMIC
COSN27932398 1727 COSMIC
COSN28151327 1727 COSMIC
COSN32065430 1747 COSMIC
COSN6021681 1776 COSMIC
COSN27976123 2211 COSMIC
COSN7201621 2398 COSMIC
COSN29058999 2799 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1339685806 1 dbSNP
rs113566907 2 dbSNP
rs1163226376 3 dbSNP
rs1367731516 7 dbSNP
rs1423732200 9 dbSNP
rs200542196 15 dbSNP
rs771749701 17 dbSNP
rs370018053 22 dbSNP
rs778489228 37 dbSNP
rs1042198330 48 dbSNP
rs1465722945 52 dbSNP
rs192973179 66 dbSNP
rs1246604350 67 dbSNP
rs1400530637 70 dbSNP
rs1192011812 78 dbSNP
rs1424644407 79 dbSNP
rs1172287904 87 dbSNP
rs1412906036 95 dbSNP
rs1161444314 97 dbSNP
rs897857612 102 dbSNP
rs1035664980 112 dbSNP
rs778911813 113 dbSNP
rs1397486948 119 dbSNP
rs1003776465 127 dbSNP
rs1053938288 139 dbSNP
rs1366446856 148 dbSNP
rs1177285384 152 dbSNP
rs757118451 153 dbSNP
rs1439200580 160 dbSNP
rs938283284 163 dbSNP
rs1238817380 166 dbSNP
rs1329190796 166 dbSNP
rs1266721519 174 dbSNP
rs28672974 174 dbSNP
rs926867457 174 dbSNP
rs1045868 193 dbSNP
rs1278184840 214 dbSNP
rs949376944 221 dbSNP
rs1200881086 225 dbSNP
rs1184492916 229 dbSNP
rs1349754595 229 dbSNP
rs1472278807 233 dbSNP
rs1307043247 245 dbSNP
rs1382685629 246 dbSNP
rs919257005 247 dbSNP
rs946923761 248 dbSNP
rs1348984150 254 dbSNP
rs1402751379 256 dbSNP
rs371303464 261 dbSNP
rs892877931 269 dbSNP
rs1289778481 280 dbSNP
rs972157496 290 dbSNP
rs201501651 297 dbSNP
rs61209814 297 dbSNP
rs1054161212 318 dbSNP
rs1339571307 319 dbSNP
rs934301399 324 dbSNP
rs924276558 330 dbSNP
rs1210863927 346 dbSNP
rs954106603 357 dbSNP
rs1040456266 358 dbSNP
rs1157410683 362 dbSNP
rs1252724812 366 dbSNP
rs944606199 368 dbSNP
rs1419570303 369 dbSNP
rs910475587 376 dbSNP
rs1362037329 381 dbSNP
rs1473719063 394 dbSNP
rs1163729999 404 dbSNP
rs1412827438 423 dbSNP
rs1408815857 425 dbSNP
rs1309482516 430 dbSNP
rs998506024 432 dbSNP
rs1408752800 433 dbSNP
rs1326254382 444 dbSNP
rs139869517 452 dbSNP
rs1246211896 454 dbSNP
rs1284076762 460 dbSNP
rs1357760811 461 dbSNP
rs1020617536 462 dbSNP
rs1231063704 462 dbSNP
rs951893291 465 dbSNP
rs1482837107 468 dbSNP
rs1203155492 479 dbSNP
rs920666859 484 dbSNP
rs1188467294 486 dbSNP
rs1443025538 490 dbSNP
rs1188178578 503 dbSNP
rs972168466 504 dbSNP
rs1486547602 511 dbSNP
rs113680237 512 dbSNP
rs1442620383 518 dbSNP
rs1035000281 539 dbSNP
rs1354241160 540 dbSNP
rs1053972353 552 dbSNP
rs1003955393 580 dbSNP
rs1165757768 581 dbSNP
rs1286253130 586 dbSNP
rs540866798 587 dbSNP
rs1226169674 591 dbSNP
rs1023873227 593 dbSNP
rs145954877 595 dbSNP
rs893999801 596 dbSNP
rs1341848225 597 dbSNP
rs755673271 599 dbSNP
rs1225547408 618 dbSNP
rs2132428 621 dbSNP
rs919289935 635 dbSNP
rs1199939316 636 dbSNP
rs998585410 653 dbSNP
rs942132162 657 dbSNP
rs1190317631 665 dbSNP
rs1248449154 667 dbSNP
rs902940433 668 dbSNP
rs909265938 672 dbSNP
rs1448599389 675 dbSNP
rs1214168769 676 dbSNP
rs984362628 679 dbSNP
rs1399778232 688 dbSNP
rs1040001567 689 dbSNP
rs953942926 693 dbSNP
rs1346370831 696 dbSNP
rs944410097 697 dbSNP
rs1161884074 701 dbSNP
rs1459309479 702 dbSNP
rs757259942 706 dbSNP
rs1413113264 719 dbSNP
rs1364940679 728 dbSNP
rs1380818866 736 dbSNP
rs1303761028 740 dbSNP
rs1232690016 747 dbSNP
rs1331887986 747 dbSNP
rs1165952223 749 dbSNP
rs1331276349 757 dbSNP
rs377452462 757 dbSNP
rs1476274438 766 dbSNP
rs1210542811 769 dbSNP
rs910464246 772 dbSNP
rs1192752351 778 dbSNP
rs184225898 786 dbSNP
rs1269080140 792 dbSNP
rs1243817662 796 dbSNP
rs1433373685 799 dbSNP
rs191430468 803 dbSNP
rs187038941 804 dbSNP
rs545863797 805 dbSNP
rs920405027 807 dbSNP
rs1160557050 812 dbSNP
rs972322428 815 dbSNP
rs1452158909 816 dbSNP
rs1295632348 819 dbSNP
rs1289904075 827 dbSNP
rs962112102 828 dbSNP
rs1386454737 829 dbSNP
rs1234752991 835 dbSNP
rs754642999 836 dbSNP
rs1376897957 841 dbSNP
rs1229013707 845 dbSNP
rs41277162 846 dbSNP
rs1316245547 855 dbSNP
rs982125825 857 dbSNP
rs1236663224 863 dbSNP
rs1002361354 868 dbSNP
rs905394058 870 dbSNP
rs969820836 888 dbSNP
rs1266242360 889 dbSNP
rs765629002 891 dbSNP
rs554793714 892 dbSNP
rs1407956291 897 dbSNP
rs1417821766 904 dbSNP
rs1167480378 914 dbSNP
rs1363054565 919 dbSNP
rs1369432897 922 dbSNP
rs1457672555 931 dbSNP
rs1301534774 933 dbSNP
rs958294765 936 dbSNP
rs1291177222 942 dbSNP
rs61547363 943 dbSNP
rs1371219902 945 dbSNP
rs762140070 961 dbSNP
rs1000106157 962 dbSNP
rs902931282 968 dbSNP
rs1040562515 969 dbSNP
rs1008550949 971 dbSNP
rs1343831102 977 dbSNP
rs898052669 978 dbSNP
rs1463071014 980 dbSNP
rs536062012 984 dbSNP
rs1170203285 985 dbSNP
rs1479344436 985 dbSNP
rs1224681261 991 dbSNP
rs182439294 996 dbSNP
rs941996493 1000 dbSNP
rs909214091 1010 dbSNP
rs1392295312 1011 dbSNP
rs1050565013 1012 dbSNP
rs190028528 1016 dbSNP
rs1215086089 1020 dbSNP
rs764465787 1021 dbSNP
rs537112132 1023 dbSNP
rs1198840921 1032 dbSNP
rs569627825 1034 dbSNP
rs976967227 1035 dbSNP
rs1367045819 1039 dbSNP
rs940552025 1040 dbSNP
rs928055723 1049 dbSNP
rs1015538491 1050 dbSNP
rs1367597823 1076 dbSNP
rs1211617752 1077 dbSNP
rs1257158922 1080 dbSNP
rs982625508 1111 dbSNP
rs1250312087 1115 dbSNP
rs1304786599 1122 dbSNP
rs1443257312 1130 dbSNP
rs948157787 1136 dbSNP
rs916551812 1141 dbSNP
rs1311314715 1145 dbSNP
rs1416298090 1152 dbSNP
rs1330962528 1174 dbSNP
rs989447737 1175 dbSNP
rs61832448 1181 dbSNP
rs1032415947 1193 dbSNP
rs1001989189 1202 dbSNP
rs969526324 1203 dbSNP
rs1269303381 1205 dbSNP
rs1359416292 1206 dbSNP
rs1220506019 1209 dbSNP
rs1301394487 1214 dbSNP
rs1462639667 1215 dbSNP
rs1270500461 1230 dbSNP
rs1465684172 1233 dbSNP
rs551388883 1242 dbSNP
rs41277160 1259 dbSNP
rs1173776325 1262 dbSNP
rs1432373250 1263 dbSNP
rs1395669579 1264 dbSNP
rs1031710045 1266 dbSNP
rs775376857 1285 dbSNP
rs370848739 1296 dbSNP
rs566011001 1299 dbSNP
rs1317351664 1303 dbSNP
rs772181881 1304 dbSNP
rs1009042518 1308 dbSNP
rs888883666 1309 dbSNP
rs1303315850 1315 dbSNP
rs547242923 1318 dbSNP
rs1344323325 1320 dbSNP
rs185611491 1322 dbSNP
rs1028630650 1332 dbSNP
rs1330401281 1335 dbSNP
rs994542935 1336 dbSNP
rs1253875681 1338 dbSNP
rs878868840 1339 dbSNP
rs1223619947 1341 dbSNP
rs899071801 1343 dbSNP
rs149317867 1345 dbSNP
rs1208532289 1347 dbSNP
rs1453635378 1355 dbSNP
rs887805082 1361 dbSNP
rs1268367552 1363 dbSNP
rs746163810 1364 dbSNP
rs1036715543 1387 dbSNP
rs1347579770 1398 dbSNP
rs1414161722 1412 dbSNP
rs940515005 1415 dbSNP
rs1470456182 1434 dbSNP
rs1281709247 1436 dbSNP
rs906334740 1438 dbSNP
rs1405532784 1456 dbSNP
rs1046241411 1458 dbSNP
rs932102311 1461 dbSNP
rs1364556482 1477 dbSNP
rs1237085111 1479 dbSNP
rs1374789107 1489 dbSNP
rs553048089 1521 dbSNP
rs6671523 1528 dbSNP
rs1308545302 1530 dbSNP
rs948104205 1533 dbSNP
rs1392033800 1546 dbSNP
rs774687756 1552 dbSNP
rs867210495 1554 dbSNP
rs1442148017 1555 dbSNP
rs1375875267 1557 dbSNP
rs1229245008 1558 dbSNP
rs1358915194 1558 dbSNP
rs543191462 1569 dbSNP
rs776772890 1572 dbSNP
rs1465396451 1573 dbSNP
rs1207436354 1574 dbSNP
rs531869465 1576 dbSNP
rs1437252353 1580 dbSNP
rs1181002102 1583 dbSNP
rs564417199 1595 dbSNP
rs1473687201 1604 dbSNP
rs1163956213 1605 dbSNP
rs1384268039 1605 dbSNP
rs1175463703 1608 dbSNP
rs1417721066 1613 dbSNP
rs936710458 1613 dbSNP
rs1408794722 1616 dbSNP
rs943815377 1618 dbSNP
rs748544428 1620 dbSNP
rs924204576 1630 dbSNP
rs1314762209 1636 dbSNP
rs546228058 1640 dbSNP
rs1230898315 1645 dbSNP
rs1252038283 1648 dbSNP
rs988092990 1649 dbSNP
rs936559479 1650 dbSNP
rs978773832 1651 dbSNP
rs980823312 1652 dbSNP
rs969171888 1653 dbSNP
rs965678528 1654 dbSNP
rs1180888189 1661 dbSNP
rs1275977563 1662 dbSNP
rs1485563647 1663 dbSNP
rs1258588557 1666 dbSNP
rs1442487859 1670 dbSNP
rs1213649773 1671 dbSNP
rs1025105102 1692 dbSNP
rs1352238258 1700 dbSNP
rs539845553 1710 dbSNP
rs574101416 1713 dbSNP
rs572305783 1714 dbSNP
rs1336597020 1716 dbSNP
rs962219144 1718 dbSNP
rs1239926204 1720 dbSNP
rs1296629845 1723 dbSNP
rs1318781798 1723 dbSNP
rs180808745 1724 dbSNP
rs1225383435 1727 dbSNP
rs1276719530 1727 dbSNP
rs571124722 1727 dbSNP
rs561698636 1733 dbSNP
rs888001900 1734 dbSNP
rs1029006170 1745 dbSNP
rs1028779060 1747 dbSNP
rs901930959 1748 dbSNP
rs994490451 1751 dbSNP
rs898848274 1753 dbSNP
rs1014608285 1754 dbSNP
rs1378887310 1756 dbSNP
rs1480438092 1759 dbSNP
rs1159051870 1761 dbSNP
rs1052249858 1768 dbSNP
rs1366154316 1769 dbSNP
rs1163653176 1773 dbSNP
rs1475293259 1775 dbSNP
rs1005178168 1776 dbSNP
rs1384647497 1777 dbSNP
rs189644457 1778 dbSNP
rs1046615638 1781 dbSNP
rs556822322 1783 dbSNP
rs936591619 1788 dbSNP
rs538036679 1796 dbSNP
rs1012075782 1801 dbSNP
rs1487502251 1803 dbSNP
rs1261129547 1806 dbSNP
rs1261695180 1807 dbSNP
rs1206199253 1808 dbSNP
rs925164919 1810 dbSNP
rs895227832 1814 dbSNP
rs569771707 1819 dbSNP
rs1263695298 1826 dbSNP
rs1232902160 1827 dbSNP
rs1270584391 1827 dbSNP
rs557563713 1833 dbSNP
rs539422153 1834 dbSNP
rs1335807892 1837 dbSNP
rs34914653 1851 dbSNP
rs923916952 1855 dbSNP
rs1160404035 1856 dbSNP
rs1042406681 1860 dbSNP
rs944255691 1862 dbSNP
rs1325607579 1863 dbSNP
rs1366414903 1864 dbSNP
rs912819229 1865 dbSNP
rs1383794410 1867 dbSNP
rs1387957366 1870 dbSNP
rs1292505595 1873 dbSNP
rs1461497180 1874 dbSNP
rs1419644579 1876 dbSNP
rs961748553 1877 dbSNP
rs1393095114 1882 dbSNP
rs557672921 1886 dbSNP
rs1168061723 1887 dbSNP
rs985617513 1901 dbSNP
rs954220534 1903 dbSNP
rs1236591131 1911 dbSNP
rs921659386 1915 dbSNP
rs1015063091 1922 dbSNP
rs537770631 1930 dbSNP
rs963171512 1934 dbSNP
rs1029621329 1935 dbSNP
rs1178285189 1950 dbSNP
rs565294968 1953 dbSNP
rs890752146 1960 dbSNP
rs1417765268 1963 dbSNP
rs1014970659 1964 dbSNP
rs1430740217 1965 dbSNP
rs777798485 1968 dbSNP
rs138750406 1969 dbSNP
rs971048134 1971 dbSNP
rs1161855411 1977 dbSNP
rs1024882990 1978 dbSNP
rs1462506008 1982 dbSNP
rs1298731655 1992 dbSNP
rs1372495011 1993 dbSNP
rs1389498675 1999 dbSNP
rs377289803 2005 dbSNP
rs1383190742 2014 dbSNP
rs1018945619 2026 dbSNP
rs755938442 2026 dbSNP
rs895005930 2036 dbSNP
rs1196938621 2037 dbSNP
rs1338522569 2038 dbSNP
rs1270489531 2041 dbSNP
rs529179138 2046 dbSNP
rs1053568670 2047 dbSNP
rs1251292640 2051 dbSNP
rs1001066005 2053 dbSNP
rs1000878050 2054 dbSNP
rs902607665 2063 dbSNP
rs1444334930 2090 dbSNP
rs1045419469 2102 dbSNP
rs1042744116 2104 dbSNP
rs1421894202 2114 dbSNP
rs1429243376 2116 dbSNP
rs748102343 2117 dbSNP
rs1441060846 2118 dbSNP
rs1460423181 2137 dbSNP
rs1395985987 2142 dbSNP
rs1328903548 2152 dbSNP
rs944093277 2161 dbSNP
rs1451640535 2175 dbSNP
rs41277158 2178 dbSNP
rs917605654 2180 dbSNP
rs1214690014 2193 dbSNP
rs1050026358 2195 dbSNP
rs1294271983 2195 dbSNP
rs760907113 2199 dbSNP
rs549606121 2223 dbSNP
rs1168918997 2234 dbSNP
rs773278997 2240 dbSNP
rs1461202106 2242 dbSNP
rs1202139750 2245 dbSNP
rs1376483363 2250 dbSNP
rs920060003 2268 dbSNP
rs1454787619 2269 dbSNP
rs1417476381 2282 dbSNP
rs974246113 2284 dbSNP
rs1254913932 2292 dbSNP
rs963419908 2297 dbSNP
rs1178581932 2302 dbSNP
rs1348657321 2302 dbSNP
rs907654957 2309 dbSNP
rs940457306 2312 dbSNP
rs114225663 2316 dbSNP
rs1273959795 2317 dbSNP
rs1331918154 2318 dbSNP
rs1346705336 2322 dbSNP
rs1197387762 2333 dbSNP
rs1431043170 2334 dbSNP
rs1287869805 2337 dbSNP
rs186991861 2342 dbSNP
rs952352215 2350 dbSNP
rs1234873234 2351 dbSNP
rs1284534647 2355 dbSNP
rs1323409218 2356 dbSNP
rs1372558164 2380 dbSNP
rs564609547 2385 dbSNP
rs1306367296 2391 dbSNP
rs1215350209 2392 dbSNP
rs975430136 2402 dbSNP
rs865982122 2405 dbSNP
rs966304277 2408 dbSNP
rs754478932 2423 dbSNP
rs1010213848 2438 dbSNP
rs552351302 2450 dbSNP
rs1012095649 2453 dbSNP
rs1330448184 2457 dbSNP
rs1412036542 2460 dbSNP
rs956118131 2471 dbSNP
rs41277156 2476 dbSNP
rs528127024 2487 dbSNP
rs1358222440 2490 dbSNP
rs1032104481 2494 dbSNP
rs903711960 2501 dbSNP
rs779684447 2509 dbSNP
rs374213502 2516 dbSNP
rs1281725212 2518 dbSNP
rs150195880 2521 dbSNP
rs902595160 2533 dbSNP
rs1223573588 2538 dbSNP
rs1021066348 2545 dbSNP
rs1469671811 2548 dbSNP
rs1426031276 2567 dbSNP
rs116641379 2589 dbSNP
rs1223440433 2604 dbSNP
rs1184206404 2605 dbSNP
rs182427005 2606 dbSNP
rs1049768178 2610 dbSNP
rs932854752 2611 dbSNP
rs1350043246 2613 dbSNP
rs14007 2626 dbSNP
rs1426199811 2628 dbSNP
rs1163755084 2634 dbSNP
rs1283776903 2636 dbSNP
rs1222753864 2641 dbSNP
rs1049318889 2643 dbSNP
rs1191836362 2648 dbSNP
rs779629748 2651 dbSNP
rs1441997171 2663 dbSNP
rs1038543596 2664 dbSNP
rs940235990 2674 dbSNP
rs1445292500 2676 dbSNP
rs115948766 2679 dbSNP
rs1357443445 2681 dbSNP
rs1197621025 2688 dbSNP
rs983245629 2692 dbSNP
rs1275072335 2709 dbSNP
rs1438352347 2714 dbSNP
rs922118243 2716 dbSNP
rs974918039 2717 dbSNP
rs949176888 2730 dbSNP
rs757645603 2750 dbSNP
rs1384220109 2753 dbSNP
rs1312725049 2754 dbSNP
rs990455832 2755 dbSNP
rs959245960 2764 dbSNP
rs1169122051 2768 dbSNP
rs1032261969 2772 dbSNP
rs754132865 2776 dbSNP
rs1409927388 2781 dbSNP
rs557626579 2788 dbSNP
rs764672602 2789 dbSNP
rs966591651 2792 dbSNP
rs1336395190 2803 dbSNP
rs1021223311 2804 dbSNP
rs1008281544 2805 dbSNP
rs1270880820 2826 dbSNP
rs1338755556 2827 dbSNP
rs1217953394 2839 dbSNP
rs1400228199 2841 dbSNP
rs1462539935 2848 dbSNP
rs1408752054 2851 dbSNP
rs1204027429 2852 dbSNP
rs891222037 2856 dbSNP
rs979276161 2857 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 90806.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguuuucauuaacACCAAAAa 5'
                           ||||||| 
Target 5' ----------uccaggaUGGUUUUa 3'
1 - 15
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000535388.1 | 3UTR | UCCAGGAUGGUUUUAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

Error report submission