miRTarBase - #MIRT540225


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pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SAMD5   
Synonyms dJ875H10.1
Description sterile alpha motif domain containing 5
Transcript NM_001030060   
Expression
Putative miRNA Targets on SAMD5
3'UTR of SAMD5
(miRNA target sites are highlighted)		 
>SAMD5|NM_001030060|3'UTR
   1 ATATCATTTTTGAGACCTCGTGGAGGACTGATGAGGTGCCTGAAGACTGGAAAAGGGCATATTTAGAACCTTCTTTCAAA
  81 AAGGGAAATGGATGATGACCCTGGAAATACTCATCAGCTTAACTTTTTGCTTGGACAAATTCTGGAATAATCAACTTAGT
 161 AAACTGGGTAACTGGCTTATAACAGCTAGAAATAAGGCAGTGAACTATCACGCATAAAGAAGTATTGAGTTCATTTTTTT
 241 AAGAAGATATCATGATGAGATACAGTCTTATGCATTTCTTGGCATTCTCCCTTCCATTCTTAATGAAAACAGATGAGGTT
 321 GGCTAAGGCATTTGAGTCATAACTTAGTTTAAGTACAATATAACAAAAAGGTAGATTTCTGACAGTAAGTAGTAATTATA
 401 TTATTTCCAAATTTGCTTTTAACTTGAGAACAGTAGCTTTAATTTTTATATTCAAGCATACATTCTACTTCATTTCATAT
 481 AGGACCATGTTTTTATAAGATAAGATACATAATTCTATGTAGAATAGTTTGGTGAAGGAATTCTTATTTTAAGGTGCTTT
 561 TATATAGTTATTTTGTATATTGGTACAATGTTAAAGGTGATGAATTAAGGAACATCACCAAGAGAGGACAATTTCTTCTA
 641 ACTTCTCTTTTTAAATTTAATCTGGCTGAGGTTTAGTATTAGGACTAATACAAGTGTCTTGCTCTGACATGCATCAAGCA
 721 AGAGCTAGCTATTTTACTTCATAGCTAGTTTCTTGCACTCTGTGGAGACTGCCAGGGCCGCAGCTCACAGCCTGTTCTGA
 801 GCTGCAGTGCTTTATCCCACCTTGCTCTCCAGGCTTCTGACTTCAGGCCTGTGGGGGCCGGGAGGTGGGCAGCGGCAGTG
 881 GCCTGAGGAGCCCTGTAGAACTACGGCTGAAAAAGAAAGTAGATTGAGGTGGGGGGAGGAAATTAACAGGAATCTAGAGT
 961 TTTTCTAATTCTTATCGTCTTATCGTTCTTGTGTTTGGATGCTGGTAGTTTTTTTTTTTTTAGACAGAGTCTCGCTCTGT
1041 CACCCAGGCTGGAGTGTAGTGGCACAATCTTGGCTCACAGTGACTTTCGCCTCCCAGGTTCAAGGAATTCTCCTGCCTCG
1121 GCCTCTTGGTAGCTGGGATTACAGGCACGCATCACCACACCCAGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTT
1201 ACCATGTTGGCCAGGCTGTTCTTGAACTCCTGGCCTCAAATGATCCACTCGCCGTGGCCTCCAGTAGCGCTGGGATTACA
1281 GGCGTGAGCCATCACACCCGGCCTGGATGCTGGTAGTTTTATTTTCTGCTTAGAAAACGCAACCATGTTGATGGGACCAA
1361 AAACTTAGTTGAAAGAAGCCATGGCAAAAGATGTTGACGTACAACTGGCTCCTGAGGCTGTCAATTGTTTAGAGCTCCCA
1441 AGTAGTACTGCATTACGGAATCTACTACTTAGAAGAATGTACAAGATGTAAGTTCCCATCGGCACCGTCATGGTAAGAAG
1521 AATAAGAAACTCTCAAAGGAAAAGAAACTTACATTCACTTTTTCCTGGTCCATTTTGGTTCCTAAGAATAGATAGGCCAT
1601 TAAGAAGGATATTAGGTTTCTAAGGACAATTTTAACACAATACTGCTTTAAAAATCTGAAGTTTAAATAGTTTAGCTATT
1681 TCTGTAGGTTAATTCAGGCACTGACTAAAATCAGTCTCATTATCATATACAAATGTAAGGAAGTTAAATTTTAAAAGCAT
1761 GTATAGGTTGTCCTTAAATTATACAAAAGCTTTTAGTTTCATCAGGATTATATTCCAGTTAACCTTTCATCTTTTTTTTT
1841 TTTCCAAATGAACTAGGGTCTTTAAAATTCCTAAGTAGATTCTTTTGAGTGGTAGGGGAGTCTGTATAGATTACAGATAT
1921 AATTTATTGTGATAACAAATGGCTTCCTGTTTGACCTCATTTCCAGGTGTCGCATCCGTGGCTGATTTATTTCACAGATG
2001 TACATTTGCATGTACTTGTTGAACTTTGCTAGGAAGGACTCAATTTTTGAAAAATCTGTTATTTTCACTGTGGGCCTTAT
2081 GAGGCAATCTACTGCAATGGAAAAAGGGTTCCTTGGTCATTTCAAGTTTTATTTTCTATTAGAGTAATATCTAACTTCAA
2161 TTATTTTGCCAGGTTTAAACCTTCTCTCTGTGTCTGTGGTTAGAATTTGAAAATAACAATGCTCTGCTTAAAGTAAGAGT
2241 CACAGTCAGCAAAAAAAGCCAATGGATTTTAAAAAGACATCTTAGTTAAAGCTAGAGGAAGAAAACTTCAAATAAGCAAA
2321 GAAGTATTGAAGGATGCCCACGAATTCCTTTGCATTAAAATCAAGATGAGGTAAGAGGTAGAATATAAGAGAAAGGGATT
2401 ATTTTTACCATGAATTGTATCTGGGGACAGTTAGTCTTAGAAGGAGTAATTTTTTCAGCGTTTTTCCTCTGTATCTAAAC
2481 ACCAATAATATACTTAATTTTTGAATATAAAAGAAGTAGCAATTGACTAAGAATAAATATGTTATAAAAACTAGGGGATT
2561 ATCTTGATTTACATTTCCTAGAGTATTAAAAGAGATTAATTACAGACTTTCACTTGATAATATTGAGGAGTCTGGAGGGT
2641 CATAGCAAAATTTTCTTTAGTTCATCTTAAAATTTAGGGAGGTAAAAAAAGATTTTATTCACATAAAAGATTTCTTGGCA
2721 TAGGGAAGGCGTAATGTTAAGGGCTTCTTCCTTACCCAAGTGGGAGCTGAACCAGTAATTGTGGGGAAAACTGAATTTAT
2801 AGCAACAAAGGATAGTAGTTTCTCAACTGGGAGCATACGAGCAATTTCTCAGTTCAGAGATATTTATAGCATCTTGGTGT
2881 TATGCAATAAACAATGACAACAACAAGCATTGAGCTTTCACTTTGGAGTTACTCAGATCTGAGTTTAAATTCTAAAATTA
2961 TTCTAGTAGTATTTTCCTGCGGTGAATCTGTTAAGGATGTAAGCTATAGTGTAGCTTGGGGAATCATCTTGAACAGTTAT
3041 GAAACTCATTAAAGCTTCTTTTCCCTTGTCTGTAAAATGGGAAAAATAAATACCTCTATAGCTCTTAAGAGGCTTAAGAG
3121 TTCTATGGCTTACACCCACATACAGTCCTTGGCTCAGTGCTAGGCATGTAGCAGGTGCTGACTGCCTCTCTCCCTTCCCT
3201 TCTTTACTCTCAGTTGTCTTATTTCTTCTTATGCAGAAGAGATTACCTTAAAGCTGACTAGAAAACTCAGACATAAATTG
3281 ACATTTCCTTATCATTGCCTGAAACCCACTGAATAAGTCCCCTTTGATTTCTCTCAGGAAGGATAAAAAAGGCTACAGTA
3361 CCTGCTCATAGGAGTTCAGTAAATGTTTATTGATTGAATGAAAAGAATTTGATTTAAGGAAACAATAACACTCCATCCTG
3441 GGCAACAGAGCAAGATCCCGTCTCAAAACAAAACAAAACAAAACAAAACAGCAAATTCATAAAGGCCAGCAGTTTTCAAG
3521 TCTGGGGAAATAGGCACATGGACAGATTATATGAAGGTATTTCATTAGCTTTCTTCTCTTTATGGCAGCTTCAGATTGAT
3601 GAATTTGAGGTACAAATGAGTGAGTGACATATGTATATTTTCCTCTGATTTTATGACTGATTTACAAATTAGGAGTGCAA
3681 ATGGGCTGTTCCCCGATAGCATCTTCTGGGAAGAATCCAACCAAGATACAAAGCAGATGATGGTGGATCGGCAAACTCTT
3761 TTCTATGAAAAGAAAAACCAGATATACCAGGGACTGGAAAGCACCTGCTTGAAAATTGATATGAGCATGTCTGAATTTTT
3841 CCCTTATAAGAGCCTGAGTATTGTAACAGGTCTCTTGCACAGGGGGTTGAAAAATAAAAAAAGAAGTTAACATAATTAAA
3921 ATGCTTGGACAAAACATTTGCTTTATATAGATTCTTACAAGTAATATTTGATTAGGTATCAAAATAGGTTTAGGCAGGTG
4001 GAAGTTCTGAATTTCAAGGCAAATAAGGCATGAAGGGTGGAACATTGCATCTAGGGAAAATAAGAGAAATAAGTGAAAGT
4081 CTGACCCTACATTGCCAATTCTCAGACCAAGTACAAAGTATTAGGAATTTTTTATATCAGCTGACATCTTGTGCTTACAG
4161 TAAAGCCATATAGATGCACACATAGTGACTTTATTAAATCAAATGAGTTGTGCAGAGCAGAGCAAATCTATTAGGCTTTC
4241 TCTTTTAGAGTTTTCTAATTTTACTCTTATTAGCTCCCTCAGTTGTCATCAATTACATATTCCTACATCAGATATTTTAC
4321 ACTATCAGATTCTTTGATTAAAAAATCATCTTCAGCTTTACATTATTAATCTCTGAGGACATAAAATCAAATAACTTTCT
4401 AGTCCATGATCATTAATCCCTACTATTTTAGATATTTCCATAAAAGGCTTAAAGGGAAAAAAAAATGGTAGGTAGTTCAG
4481 AAAAAAATGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGTGGGCAGATCATTTGAGGTC
4561 AGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTGTCTACTAAAAATACAAAAAAAATTAGCTGAGTGTGGTG
4641 GTGTGCGCCTGTAATCCCAGCTACTAAGGCAGGAGAATGGCTTGAACCCAGGAGGTGGAGGTCGCAGTGAGCTGAGATCG
4721 CGCCAGTGCGCTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTAAAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAAATTG
4801 AAGAACATAACTTTTCTACTTATGAAATAGATAATTTTTTAAAATTGTTTAAACTCCTGGAAATTAAGTGTTATTTTTTA
4881 TTACTGCAGTTGAGAGATACCTTTTCAGAGGAAAACAAGAGGCTAAATTCCATGTTAAGAGCTAAGTAGTATTTTTTTCT
4961 TAACAATTTTGCCAAAATTTCTTCTACTGGACCAAAAGGAAATAAATCTACAATAAATCTACTTTCTAAATATTATTTAA
5041 GATGGGAAATGTCTTTTATAGGTATATTCTGTATAATACCCTTAATTAGATGAATTATCCCTTATCATTCCAAAAATGAA
5121 ATGCTGTGTTAAATATCTCCAGGGCAAAGTGGTATGTTGACTGGGACAAACGTTAGAAATTGTATTGTTCATTGCACTTG
5201 TTGCCCTGTTCCCCAAGCTTGTCAATGTTTAGAGATACTATTCGGGTTGCTAAAGCCATTATTCATAGAAAATTTCTGCC
5281 CCTACAGAAGTGTGTGCATGGGCCTTGGAAAATCTACATGTGTATATCTGAGTAGCGAAGCACAGATTCACTCTAATTGA
5361 AAGCAGCAGTTTGGTTTTGTAAATGTAATTGCAATTGACACTTTCTTTTCCCTTTCAGTTATTATTTTTTTTAAAGGACG
5441 TTATGAGAAGGCACTATGAAAAGCCTAATTGGAATAGCATTATGAACCATGTAATGCATGCCCATGCACACTGTGATTTG
5521 CAAACATATGTCCGCTCTTCAATAAATGTTACGGCTTTCACAGCG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuuaggguaGGGGUCCUUGGGg 5'
                   ||: ||||:||| 
Target 5' cggcagtggCCTGAGGAGCCCt 3'
 873 - 894 137.00 -20.30
2 
miRNA  3' uuuAGGGU-AGGGGUCCUUGGGg 5'
             |||||  ::| |||||::| 
Target 5' gccTCCCAGGTTCAAGGAATTCt 3'
 1089 - 1111 131.00 -18.80
3 
miRNA  3' uuuAGGGUAGGGGUCCUUGGGg 5'
             | :|||: || | ||||| 
Target 5' cctTATCATTGCCTGAAACCCa 3'
 3287 - 3308 131.00 -16.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26993732 20 COSMIC
COSN26993733 30 COSMIC
COSN26434025 44 COSMIC
COSN31520975 131 COSMIC
COSN31610307 134 COSMIC
COSN31614320 137 COSMIC
COSN30178571 143 COSMIC
COSN30504272 162 COSMIC
COSN8493798 176 COSMIC
COSN31962702 203 COSMIC
COSN28677180 212 COSMIC
COSN4856585 224 COSMIC
COSN25241011 241 COSMIC
COSN30540742 320 COSMIC
COSN30110248 329 COSMIC
COSN22370810 549 COSMIC
COSN27027931 578 COSMIC
COSN29359600 665 COSMIC
COSN14972792 713 COSMIC
COSN31540895 818 COSMIC
COSN30175784 897 COSMIC
COSN8493799 904 COSMIC
COSN17816333 1012 COSMIC
COSN19025108 1092 COSMIC
COSN14798306 1127 COSMIC
COSN8399111 1149 COSMIC
COSN32058429 1339 COSMIC
COSN6307793 1353 COSMIC
COSN21762806 1399 COSMIC
COSN26476692 1426 COSMIC
COSN26713670 1539 COSMIC
COSN28201472 1565 COSMIC
COSN6307794 1786 COSMIC
COSN20103477 1844 COSMIC
COSN31517046 1861 COSMIC
COSN31517592 1869 COSMIC
COSN31539042 1973 COSMIC
COSN14737280 1978 COSMIC
COSN31566640 2057 COSMIC
COSN31489698 2071 COSMIC
COSN31541399 2119 COSMIC
COSN31568163 2130 COSMIC
COSN21258063 2143 COSMIC
COSN20091459 2412 COSMIC
COSN25374172 2699 COSMIC
COSN15080174 2716 COSMIC
COSN29354205 2730 COSMIC
COSN4953324 2839 COSMIC
COSN23749191 3118 COSMIC
COSN14877203 3336 COSMIC
COSN9969969 3397 COSMIC
COSN32057062 3538 COSMIC
COSN21071112 3677 COSMIC
COSN14714085 3684 COSMIC
COSN29996581 3999 COSMIC
COSN27763633 4097 COSMIC
COSN7693554 4208 COSMIC
COSN23858955 4281 COSMIC
COSN23366657 4466 COSMIC
COSN25564142 4633 COSMIC
COSN20091460 4786 COSMIC
COSN4856586 5245 COSMIC
COSN28925281 5289 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778786113 2 dbSNP
rs752813927 5 dbSNP
rs370324233 7 dbSNP
rs374975333 11 dbSNP
rs372956753 17 dbSNP
rs747262052 18 dbSNP
rs202108242 20 dbSNP
rs746257839 21 dbSNP
rs368501487 23 dbSNP
rs754691095 25 dbSNP
rs1425671131 34 dbSNP
rs891028936 40 dbSNP
rs190544405 41 dbSNP
rs1311063990 42 dbSNP
rs1374785756 48 dbSNP
rs771602563 49 dbSNP
rs772803283 51 dbSNP
rs760298218 53 dbSNP
rs1349579192 62 dbSNP
rs748023011 67 dbSNP
rs1018215427 70 dbSNP
rs963682811 71 dbSNP
rs936583155 86 dbSNP
rs529885942 88 dbSNP
rs1354513938 90 dbSNP
rs1311305896 96 dbSNP
rs1229771160 98 dbSNP
rs1416920075 124 dbSNP
rs1376291018 132 dbSNP
rs1167453645 139 dbSNP
rs894939168 149 dbSNP
rs1375310679 165 dbSNP
rs1013761278 168 dbSNP
rs1000944901 173 dbSNP
rs550005996 177 dbSNP
rs1190503141 179 dbSNP
rs1032058916 184 dbSNP
rs1486471167 186 dbSNP
rs569811443 188 dbSNP
rs758220793 194 dbSNP
rs1256394985 196 dbSNP
rs988325967 198 dbSNP
rs538915816 203 dbSNP
rs970941475 208 dbSNP
rs702341 212 dbSNP
rs552315811 213 dbSNP
rs942007621 222 dbSNP
rs1334055843 223 dbSNP
rs1291283239 230 dbSNP
rs1004575750 233 dbSNP
rs879194937 239 dbSNP
rs1341351456 252 dbSNP
rs1328384396 265 dbSNP
rs1389746968 268 dbSNP
rs1398652020 268 dbSNP
rs1298801215 272 dbSNP
rs1384627353 289 dbSNP
rs1038141661 294 dbSNP
rs758104662 295 dbSNP
rs1170412066 301 dbSNP
rs1167612742 303 dbSNP
rs929403889 309 dbSNP
rs13199581 313 dbSNP
rs1368714771 318 dbSNP
rs1180567881 319 dbSNP
rs565722957 320 dbSNP
rs1252120948 326 dbSNP
rs1198723559 335 dbSNP
rs1172904221 351 dbSNP
rs534352849 354 dbSNP
rs554210837 355 dbSNP
rs13199235 356 dbSNP
rs1271175947 357 dbSNP
rs1215361956 358 dbSNP
rs1356742116 365 dbSNP
rs150484796 367 dbSNP
rs1008081022 372 dbSNP
rs1335566066 375 dbSNP
rs1237226810 387 dbSNP
rs1365286470 388 dbSNP
rs1436514169 395 dbSNP
rs702342 401 dbSNP
rs1440234832 416 dbSNP
rs1392947146 424 dbSNP
rs1328466210 427 dbSNP
rs557519864 429 dbSNP
rs13199377 431 dbSNP
rs1384630559 437 dbSNP
rs1306220114 452 dbSNP
rs1227197363 457 dbSNP
rs368804110 459 dbSNP
rs1325947372 461 dbSNP
rs1453218751 463 dbSNP
rs1201997379 466 dbSNP
rs370819434 473 dbSNP
rs946108471 481 dbSNP
rs1452094078 488 dbSNP
rs1465381974 490 dbSNP
rs1000530371 496 dbSNP
rs559830391 501 dbSNP
rs956465705 512 dbSNP
rs7772025 516 dbSNP
rs749825332 517 dbSNP
rs1437882037 519 dbSNP
rs1326354025 521 dbSNP
rs1316733638 527 dbSNP
rs1402786120 544 dbSNP
rs1362095105 553 dbSNP
rs1158839536 561 dbSNP
rs180777614 565 dbSNP
rs1379140034 566 dbSNP
rs1467968526 569 dbSNP
rs1174967459 576 dbSNP
rs970846162 578 dbSNP
rs886200970 588 dbSNP
rs1388795839 600 dbSNP
rs1458379763 612 dbSNP
rs1286571867 621 dbSNP
rs980913687 622 dbSNP
rs138245506 636 dbSNP
rs1264172680 640 dbSNP
rs1302484948 648 dbSNP
rs1345978687 649 dbSNP
rs1282645308 653 dbSNP
rs1347776816 654 dbSNP
rs185167190 660 dbSNP
rs762266294 671 dbSNP
rs189975257 674 dbSNP
rs767841756 679 dbSNP
rs1262773775 680 dbSNP
rs1339365234 687 dbSNP
rs1330037717 690 dbSNP
rs1218040855 691 dbSNP
rs1268885960 707 dbSNP
rs563496362 708 dbSNP
rs374839261 713 dbSNP
rs1029230282 714 dbSNP
rs368956321 740 dbSNP
rs1373206058 749 dbSNP
rs911980402 753 dbSNP
rs537007331 755 dbSNP
rs552434035 756 dbSNP
rs1479321046 762 dbSNP
rs149619908 763 dbSNP
rs1412297695 767 dbSNP
rs1039593835 768 dbSNP
rs1473331238 769 dbSNP
rs1478687667 774 dbSNP
rs146080619 776 dbSNP
rs773781055 780 dbSNP
rs967439227 781 dbSNP
rs1484838444 798 dbSNP
rs1259849489 799 dbSNP
rs899748373 820 dbSNP
rs1344081753 830 dbSNP
rs1437277327 831 dbSNP
rs978814154 832 dbSNP
rs1216780510 841 dbSNP
rs1319201275 845 dbSNP
rs1453762322 848 dbSNP
rs757656578 852 dbSNP
rs779079023 853 dbSNP
rs936610263 855 dbSNP
rs745973191 860 dbSNP
rs1353199982 861 dbSNP
rs892097846 865 dbSNP
rs1353355880 866 dbSNP
rs1282962103 868 dbSNP
rs1326264011 872 dbSNP
rs547790272 874 dbSNP
rs761141171 875 dbSNP
rs1164014435 876 dbSNP
rs1290793073 882 dbSNP
rs1305041532 885 dbSNP
rs1316379381 886 dbSNP
rs1222278326 890 dbSNP
rs1293889291 895 dbSNP
rs1416273421 897 dbSNP
rs1182599949 899 dbSNP
rs556687899 905 dbSNP
rs1024642212 907 dbSNP
rs1206674433 916 dbSNP
rs567757603 926 dbSNP
rs1221473087 931 dbSNP
rs536742814 932 dbSNP
rs577439818 934 dbSNP
rs1033831876 937 dbSNP
rs1406665199 953 dbSNP
rs963648318 954 dbSNP
rs1277306132 957 dbSNP
rs949297293 958 dbSNP
rs974033210 960 dbSNP
rs1377585158 965 dbSNP
rs1325096974 966 dbSNP
rs1423871212 968 dbSNP
rs577352271 974 dbSNP
rs1007119546 975 dbSNP
rs1351349743 975 dbSNP
rs1026584207 978 dbSNP
rs539661316 984 dbSNP
rs546162656 985 dbSNP
rs940459772 986 dbSNP
rs1387633237 994 dbSNP
rs553601030 1000 dbSNP
rs702343 1001 dbSNP
rs898851775 1004 dbSNP
rs397729322 1009 dbSNP
rs5880711 1009 dbSNP
rs879089946 1009 dbSNP
rs1215480508 1010 dbSNP
rs1316019813 1011 dbSNP
rs1281641140 1017 dbSNP
rs1302983774 1022 dbSNP
rs1371551891 1023 dbSNP
rs1444684872 1024 dbSNP
rs1296645923 1025 dbSNP
rs1376913354 1026 dbSNP
rs542205661 1034 dbSNP
rs911974991 1035 dbSNP
rs562055138 1038 dbSNP
rs1293940600 1044 dbSNP
rs575754614 1045 dbSNP
rs995876680 1049 dbSNP
rs1420395329 1057 dbSNP
rs1394614652 1063 dbSNP
rs1050486831 1068 dbSNP
rs1435466717 1083 dbSNP
rs1268641064 1084 dbSNP
rs975226708 1087 dbSNP
rs921126943 1089 dbSNP
rs182561912 1090 dbSNP
rs1054089450 1092 dbSNP
rs1218270527 1094 dbSNP
rs892386443 1096 dbSNP
rs1439312070 1098 dbSNP
rs1202069718 1102 dbSNP
rs1353960877 1106 dbSNP
rs1020450109 1112 dbSNP
rs1231981045 1120 dbSNP
rs945035514 1121 dbSNP
rs702344 1127 dbSNP
rs1213776329 1130 dbSNP
rs138900019 1136 dbSNP
rs1400912233 1138 dbSNP
rs1033039052 1149 dbSNP
rs1311192868 1150 dbSNP
rs1443395745 1152 dbSNP
rs1378752359 1157 dbSNP
rs1001937232 1161 dbSNP
rs552110158 1162 dbSNP
rs1426310492 1169 dbSNP
rs76077507 1170 dbSNP
rs1163470225 1178 dbSNP
rs1488438430 1203 dbSNP
rs1420728434 1219 dbSNP
rs991518354 1225 dbSNP
rs542055725 1229 dbSNP
rs768447563 1238 dbSNP
rs1354168495 1241 dbSNP
rs1256529672 1243 dbSNP
rs1203801833 1251 dbSNP
rs561804730 1252 dbSNP
rs777515802 1254 dbSNP
rs907742245 1255 dbSNP
rs1380674096 1259 dbSNP
rs116041467 1260 dbSNP
rs776356299 1265 dbSNP
rs750126934 1266 dbSNP
rs573041493 1269 dbSNP
rs757332830 1270 dbSNP
rs567693030 1276 dbSNP
rs1171853798 1280 dbSNP
rs1475060503 1284 dbSNP
rs1018981050 1285 dbSNP
rs530457292 1289 dbSNP
rs1256327680 1290 dbSNP
rs1212588251 1291 dbSNP
rs920372983 1297 dbSNP
rs964778474 1298 dbSNP
rs761763610 1300 dbSNP
rs1312465091 1301 dbSNP
rs141935820 1302 dbSNP
rs890116796 1311 dbSNP
rs1260749844 1315 dbSNP
rs530870992 1316 dbSNP
rs371616448 1339 dbSNP
rs769581773 1340 dbSNP
rs1243230684 1341 dbSNP
rs1041939060 1342 dbSNP
rs1476636955 1349 dbSNP
rs550906775 1355 dbSNP
rs1392810117 1356 dbSNP
rs1165358971 1387 dbSNP
rs1459158181 1392 dbSNP
rs903385646 1394 dbSNP
rs1368661851 1398 dbSNP
rs989336741 1399 dbSNP
rs1033564895 1400 dbSNP
rs1239942421 1403 dbSNP
rs894566195 1404 dbSNP
rs1013375812 1405 dbSNP
rs79079598 1407 dbSNP
rs971793609 1410 dbSNP
rs945318909 1411 dbSNP
rs1046032572 1412 dbSNP
rs927603499 1432 dbSNP
rs553301468 1434 dbSNP
rs1211384998 1439 dbSNP
rs1357389319 1440 dbSNP
rs1260317613 1441 dbSNP
rs1461972632 1444 dbSNP
rs702345 1450 dbSNP
rs1014871201 1453 dbSNP
rs1440904751 1456 dbSNP
rs564337353 1457 dbSNP
rs1269422685 1458 dbSNP
rs995404553 1469 dbSNP
rs1391043311 1480 dbSNP
rs920385219 1481 dbSNP
rs1417337007 1488 dbSNP
rs1381690625 1489 dbSNP
rs931791466 1496 dbSNP
rs111731087 1501 dbSNP
rs886675267 1502 dbSNP
rs1225030449 1503 dbSNP
rs1200767905 1507 dbSNP
rs556124771 1508 dbSNP
rs1214790756 1511 dbSNP
rs575696225 1512 dbSNP
rs1489390251 1515 dbSNP
rs1041341717 1517 dbSNP
rs1233628923 1523 dbSNP
rs1019221251 1530 dbSNP
rs116820432 1531 dbSNP
rs1436369772 1533 dbSNP
rs142650225 1536 dbSNP
rs1234428004 1540 dbSNP
rs578037820 1541 dbSNP
rs1326158267 1549 dbSNP
rs150589816 1555 dbSNP
rs748400144 1557 dbSNP
rs1362034168 1559 dbSNP
rs1298334802 1562 dbSNP
rs989700420 1565 dbSNP
rs894631841 1578 dbSNP
rs1013035218 1585 dbSNP
rs1214232955 1588 dbSNP
rs913763268 1592 dbSNP
rs966529071 1594 dbSNP
rs1024795511 1600 dbSNP
rs1264100343 1608 dbSNP
rs1210258447 1614 dbSNP
rs552167166 1621 dbSNP
rs1480959087 1623 dbSNP
rs702346 1627 dbSNP
rs1427461617 1639 dbSNP
rs1276772127 1641 dbSNP
rs1480206842 1644 dbSNP
rs1220833384 1648 dbSNP
rs7759583 1650 dbSNP
rs937642646 1656 dbSNP
rs1278356441 1663 dbSNP
rs1159274286 1665 dbSNP
rs1356982184 1671 dbSNP
rs550591204 1674 dbSNP
rs1415040103 1677 dbSNP
rs1399443031 1685 dbSNP
rs1168290441 1690 dbSNP
rs1478642560 1691 dbSNP
rs1424645131 1701 dbSNP
rs1054831435 1703 dbSNP
rs1471919925 1714 dbSNP
rs920339494 1715 dbSNP
rs1188325318 1717 dbSNP
rs1256650002 1719 dbSNP
rs1200915302 1726 dbSNP
rs1318985102 1736 dbSNP
rs1398950558 1739 dbSNP
rs764575087 1746 dbSNP
rs1227428588 1747 dbSNP
rs973727088 1757 dbSNP
rs117369381 1758 dbSNP
rs139554961 1759 dbSNP
rs1329174972 1762 dbSNP
rs911649455 1768 dbSNP
rs1344499310 1774 dbSNP
rs1400824194 1776 dbSNP
rs944430220 1791 dbSNP
rs776070479 1793 dbSNP
rs1163768568 1802 dbSNP
rs977063196 1807 dbSNP
rs1416209011 1808 dbSNP
rs1163920457 1811 dbSNP
rs924239709 1824 dbSNP
rs1236913777 1830 dbSNP
rs1181114793 1832 dbSNP
rs1252839882 1832 dbSNP
rs144926376 1832 dbSNP
rs1458584234 1832 dbSNP
rs1219812477 1837 dbSNP
rs1280822474 1844 dbSNP
rs1347914048 1845 dbSNP
rs570486844 1846 dbSNP
rs936295151 1846 dbSNP
rs1352272442 1848 dbSNP
rs1306428320 1862 dbSNP
rs144427760 1870 dbSNP
rs1377546329 1874 dbSNP
rs1292784233 1877 dbSNP
rs1433955377 1877 dbSNP
rs1490636276 1890 dbSNP
rs117704019 1893 dbSNP
rs1267191007 1896 dbSNP
rs948880748 1901 dbSNP
rs1040610645 1921 dbSNP
rs113335320 1922 dbSNP
rs1160531617 1923 dbSNP
rs1440912992 1924 dbSNP
rs185681835 1927 dbSNP
rs907297286 1928 dbSNP
rs1004262021 1936 dbSNP
rs1182796535 1937 dbSNP
rs536090712 1938 dbSNP
rs556063697 1941 dbSNP
rs893197556 1943 dbSNP
rs1283343998 1945 dbSNP
rs376380561 1947 dbSNP
rs1027967399 1954 dbSNP
rs1300419551 1955 dbSNP
rs1217292466 1956 dbSNP
rs1369396568 1958 dbSNP
rs569595898 1959 dbSNP
rs191850509 1972 dbSNP
rs557879018 1973 dbSNP
rs702347 1978 dbSNP
rs1420315417 1979 dbSNP
rs1359126670 1984 dbSNP
rs1364698281 1985 dbSNP
rs1018699892 1992 dbSNP
rs1426361900 1995 dbSNP
rs1020343777 2005 dbSNP
rs867489062 2009 dbSNP
rs977136817 2022 dbSNP
rs1260514254 2038 dbSNP
rs758476708 2040 dbSNP
rs1485883938 2041 dbSNP
rs540347038 2044 dbSNP
rs966475681 2056 dbSNP
rs1207990163 2059 dbSNP
rs567402977 2064 dbSNP
rs957020760 2077 dbSNP
rs1217731418 2090 dbSNP
rs1330457202 2093 dbSNP
rs1333562841 2095 dbSNP
rs1338721227 2100 dbSNP
rs763020270 2101 dbSNP
rs1034890240 2107 dbSNP
rs959319402 2108 dbSNP
rs1400714774 2109 dbSNP
rs1378599960 2115 dbSNP
rs916165332 2126 dbSNP
rs1468089011 2127 dbSNP
rs1360235485 2129 dbSNP
rs990875409 2133 dbSNP
rs1360859055 2135 dbSNP
rs1464328534 2137 dbSNP
rs553880116 2138 dbSNP
rs117210155 2139 dbSNP
rs930319704 2143 dbSNP
rs1428720635 2158 dbSNP
rs541643733 2160 dbSNP
rs1290130226 2161 dbSNP
rs1179599243 2167 dbSNP
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rs1196692171 2178 dbSNP
rs907629376 2179 dbSNP
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rs1228481200 2185 dbSNP
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rs1310738287 2200 dbSNP
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rs1380531981 2208 dbSNP
rs928787215 2217 dbSNP
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rs1037106373 2251 dbSNP
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rs76051238 2736 dbSNP
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rs1175151718 2768 dbSNP
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rs887683482 2996 dbSNP
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rs1004773583 3009 dbSNP
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rs911326666 3176 dbSNP
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rs1481386292 3310 dbSNP
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rs1051796845 5063 dbSNP
rs1399690843 5064 dbSNP
rs1303992129 5068 dbSNP
rs889770651 5077 dbSNP
rs1369912970 5086 dbSNP
rs1248339935 5090 dbSNP
rs1222194920 5095 dbSNP
rs1446258465 5104 dbSNP
rs780132574 5109 dbSNP
rs1281875433 5116 dbSNP
rs1230523165 5117 dbSNP
rs1330019990 5127 dbSNP
rs1385187709 5142 dbSNP
rs1221720081 5143 dbSNP
rs375380984 5145 dbSNP
rs979698323 5153 dbSNP
rs6903802 5156 dbSNP
rs938179938 5164 dbSNP
rs903985709 5166 dbSNP
rs929338513 5172 dbSNP
rs999967628 5173 dbSNP
rs1031495155 5179 dbSNP
rs751602958 5185 dbSNP
rs201612115 5186 dbSNP
rs955883400 5189 dbSNP
rs544128211 5193 dbSNP
rs1475033453 5203 dbSNP
rs899735206 5209 dbSNP
rs773178922 5222 dbSNP
rs1024643624 5226 dbSNP
rs536542906 5231 dbSNP
rs560945314 5234 dbSNP
rs1029417070 5240 dbSNP
rs549835768 5241 dbSNP
rs1009313954 5244 dbSNP
rs1302055858 5246 dbSNP
rs909632708 5253 dbSNP
rs967726169 5255 dbSNP
rs760665126 5259 dbSNP
rs962478593 5261 dbSNP
rs1436216715 5276 dbSNP
rs972885598 5281 dbSNP
rs186865252 5282 dbSNP
rs959580224 5283 dbSNP
rs766247857 5286 dbSNP
rs934166568 5291 dbSNP
rs538271882 5294 dbSNP
rs752782066 5302 dbSNP
rs1409302712 5303 dbSNP
rs1164560463 5304 dbSNP
rs1351856012 5310 dbSNP
rs918088020 5319 dbSNP
rs1051315974 5320 dbSNP
rs1449900628 5325 dbSNP
rs1242268689 5331 dbSNP
rs929415437 5343 dbSNP
rs755023503 5359 dbSNP
rs942713758 5374 dbSNP
rs1374135429 5378 dbSNP
rs3823088 5389 dbSNP
rs1274120492 5395 dbSNP
rs903934846 5396 dbSNP
rs1277457557 5397 dbSNP
rs1306995980 5404 dbSNP
rs571812836 5405 dbSNP
rs1229753408 5417 dbSNP
rs1382595804 5422 dbSNP
rs1313349749 5423 dbSNP
rs1302950696 5425 dbSNP
rs1376009747 5425 dbSNP
rs942059848 5425 dbSNP
rs999534665 5426 dbSNP
rs1246470655 5430 dbSNP
rs1345673815 5433 dbSNP
rs79150545 5434 dbSNP
rs932530456 5435 dbSNP
rs764320099 5440 dbSNP
rs144108559 5441 dbSNP
rs1251443331 5449 dbSNP
rs544074511 5451 dbSNP
rs1196133703 5454 dbSNP
rs1236914974 5466 dbSNP
rs1254069896 5477 dbSNP
rs563840387 5478 dbSNP
rs1206579363 5480 dbSNP
rs1359272186 5494 dbSNP
rs1264050780 5499 dbSNP
rs1247385118 5505 dbSNP
rs577138585 5506 dbSNP
rs183395879 5509 dbSNP
rs970420797 5511 dbSNP
rs1042118737 5513 dbSNP
rs1182849823 5520 dbSNP
rs1001191995 5523 dbSNP
rs903573205 5528 dbSNP
rs186597851 5529 dbSNP
rs1410364219 5531 dbSNP
rs1016640808 5534 dbSNP
rs781447384 5543 dbSNP
rs868308658 5547 dbSNP
rs1033308991 5550 dbSNP
rs1355267567 5552 dbSNP
rs757543337 5553 dbSNP
rs189824370 5554 dbSNP
rs1399524348 5555 dbSNP
rs1414302121 5555 dbSNP
rs1182899869 5556 dbSNP
rs1453245496 5556 dbSNP
rs955535504 5565 dbSNP
rs548745527 5566 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 389432.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuaggguagggguccUUGGGg 5'
                          ||||| 
Target 5' ----------------AACCCa 3'
 		1 - 6
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000367474.1 | 3UTR | GAACCCAGGAGGUGGAGGUCGCAGUGAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000367474.1 | 3UTR | AACCCAGGAGGUGGAGGUCGCAGUGAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.468 1.1e-2 -0.505 5.9e-3 24 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.745 1.1e-2 -0.617 3.8e-2 9 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.315 8.8e-2 -0.173 2.3e-1 20 Click to see details
GSE19350 CNS germ cell tumors 0.298 1.7e-1 0.187 2.8e-1 12 Click to see details
GSE19783 ER- ER- breast cancer -0.094 2.0e-1 -0.048 3.4e-1 79 Click to see details
GSE26953 Aortic valvular endothelial cells 0.171 2.1e-1 0.222 1.5e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.142 2.8e-1 -0.027 4.6e-1 20 Click to see details
GSE38226 Liver fibrosis 0.137 2.8e-1 -0.054 4.1e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.117 2.9e-1 0.075 3.6e-1 25 Click to see details
GSE19536 Breast cancer -0.053 3.0e-1 -0.027 3.9e-1 100 Click to see details
GSE28260 Renal cortex and medulla -0.144 3.2e-1 -0.247 2.1e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.095 3.3e-1 0.283 8.5e-2 25 Click to see details
GSE32688 Pancreatic cancer -0.074 3.4e-1 -0.022 4.5e-1 32 Click to see details
GSE21687 Ependynoma primary tumors 0.048 3.5e-1 0.107 2.0e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells 0.082 3.5e-1 0.408 2.7e-2 23 Click to see details
GSE21032 Prostate cancer -0.039 3.6e-1 -0.027 4.0e-1 83 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.245 0.03 -0.194 0.07 62 Click to see details
ESCA 0.57 0.03 0.455 0.08 11 Click to see details
KICH -0.371 0.05 -0.326 0.08 20 Click to see details
BRCA -0.146 0.1 -0.295 0 78 Click to see details
UCEC -0.262 0.14 -0.265 0.14 19 Click to see details
PRAD 0.257 0.14 0.174 0.24 19 Click to see details
BLCA -0.23 0.2 -0.285 0.14 16 Click to see details
STAD 0.152 0.22 0.247 0.1 28 Click to see details
LIHC -0.126 0.23 -0.157 0.17 38 Click to see details
CHOL -0.244 0.28 -0.048 0.46 8 Click to see details
LUAD 0.216 0.29 0.133 0.37 9 Click to see details
PAAD -0.366 0.32 0.400 0.3 4 Click to see details
PCPG 0.524 0.32 0.500 0.33 3 Click to see details
KIRP 0.08 0.33 0.070 0.35 32 Click to see details
HNSC 0.065 0.35 0.045 0.39 40 Click to see details
COAD -0.163 0.35 -0.048 0.46 8 Click to see details
CESC 0.358 0.38 0.500 0.33 3 Click to see details
THCA 0.013 0.46 -0.022 0.43 59 Click to see details
LUSC 0.002 0.5 0.096 0.28 38 Click to see details
LUSC 0.002 0.5 0.096 0.28 38 Click to see details
LUSC 0.002 0.5 0.096 0.28 38 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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