miRTarBase - #MIRT540307


—
pre-miRNA Information
pre-miRNA hsa-mir-4526   
Genomic Coordinates chr18: 13611114 - 13611200
Description Homo sapiens miR-4526 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4526
Sequence 54| GCUGACAGCAGGGCUGGCCGCU |75
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1418307303 1 dbSNP
rs1168108556 5 dbSNP
rs1050044717 6 dbSNP
rs1250280154 7 dbSNP
rs370878033 10 dbSNP
rs1008988805 19 dbSNP
rs536331678 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GFPT1   
Synonyms CMS12, CMSTA1, GFA, GFAT, GFAT 1, GFAT1, GFAT1m, GFPT, GFPT1L, MSLG
Description glutamine--fructose-6-phosphate transaminase 1
Transcript NM_002056   
Expression
Putative miRNA Targets on GFPT1
3'UTR of GFPT1
(miRNA target sites are highlighted)		 
>GFPT1|NM_002056|3'UTR
   1 GGAATATCTATACAAAATGTACGAAACTGTATGATTAAGCAACACAAGACACCTTTTGTATTTAAAACCTTGATTTAAAA
  81 TATCACCCCTTGAAGCCTTTTTTTAGTAAATCCTTATTTATATATCAGTTATAATTATTCCACTCAATATGTGATTTTTG
 161 TGAAGTTACCTCTTACATTTTCCCAGTAATTTGTGGAGGACTTTGAATAATGGAATCTATATTGGAATCTGTATCAGAAA
 241 GATTCTAGCTATTATTTTCTTTAAAGAATGCTGGGTGTTGCATTTCTGGACCCTCCACTTCAATCTGAGAAGACAATATG
 321 TTTCTAAAAATTGGTACTTGTTTCACCATACTTCATTCAGACCAGTGAAAGAGTAGTGCATTTAATTGGAGTATCTAAAG
 401 CCAGTGGCAGTGTATGCTCATACTTGGACAGTTAGGGAAGGGTTTGCCAAGTTTTAAGAGAAGATGTGATTTATTTTGAA
 481 ATTTGTTTCTGTTTTGTTTTTAAATCAAACTGTAAAACTTAAAACTGAAAAATTTTATTGGTAGGATTTATATCTAAGTT
 561 TGGTTAGCCTTAGTTTCTCAGACTTGTTGTCTATTATCTGTAGGTGGAAGAAATTTAGGAAGCGAAATATTACAGTAGTG
 641 CATTGGTGGGTCTCAATCCTTAACATATTTGCACAATTTTATAGCACAAACTTTAAATTCAAGCTGCTTTGGACAACTGA
 721 CAATATGATTTTAAATTTGAAGATGGGATGTGTACATGTTGGGTATCCTACTACTTTGTGTTTTCATCTCCTAAAAGTGG
 801 TTTTTATTTCCTTGTATCTGTAGTCTTTTATTTTTTAAATGACTGCTGAATGACATATTTTATCTTGTTCTTTAAAATCA
 881 CAACACAGAGCTGCTATTAAATTAATATTGATATATTCAGTATTCTCTTCAACTTTGTCACGAGGAAGAATTTCCTGTAG
 961 TTAATTTTAACTTTCCTTCATTACATTGTTGCATAAAACTAGTCCCTTAGTGCCAGTTTGGAAGTTACTTGCAATTGTTT
1041 GGAAGATTTGCAGGTCGCTGACCTCATCATTTCACTCTAAGTATATGTGGTAGGCTAAGCTCAGAAAAAGGTATGTATGC
1121 TTTACACTGATAGGCACCAAATTTAGTATTGTATCCTAAGTATTTTTCCTCTTCTGTATTTTCTGTGCTCTACCCCTGAA
1201 ATATATTTAGGAATAAAGAAGATATAAATAAAGTGATATTGGGGTATGTTCAGCTTGTAAGTGTCAGAAATGGAAGTTGA
1281 CAATTTGGATTAAAATATTTAAAGTAGAATGTTATTATTTGATACCCCCAAAATTGTGAGTAATAATTTCTTAATGGAGC
1361 TTTTCTGGCCAGATCTTCAGGGCTATAGGAGAGTGTGTTTGTTTTTGGTGAAGTCCTTCTTTTTCAAAGGTTTTTACTTT
1441 TAAATTGTGAAGATAAGCTATTTAGCACAATTATTTAAGTAAGCTGTTTTTTCCTTTCTTTTCTTTCTTTTCTTGTTTTA
1521 ACTTCTGGGTGAGGTTAAGATTTTCTAATAGTTATTGTTGTTGCCAGAGAAGCATAGAATTCTGCTTGTGTCTTAGGGTT
1601 AGAGAAAGATTTGTTATATTTTGAGGTAATTTGGAAGGACTTTCATACATGGTGACTAGAAACCTGATCTTTTTAAGAAT
1681 AAAATAGGGTCACTATTTACATTATATATAATATATGGCTATTATAGCTATATTAATCTACTTTAATTGTTTCTAAGATT
1761 ATTTTGTGTAAGTCAGCTAGCGTGTGTATAGTGTCATTTCTTATGTTTTGTATATTAACGTTTTACAAACACAATTTGTG
1841 TGGGTTTGTAGCATTTCTTATAGTTTAAAGTATGATTCAGCATTCTAAGTTAAAACTAATATGTGAAGTCAGTCATTAGT
1921 CTGCATAATCTCTGTCTCCCTCTGTGTGTGTCTTTCTATAAAGCACATGTGTACACACACACACACAAATATACTGAAAG
2001 CTAGGGTAAGTTCTAAACTGAATATCAAAAACCAAAATCAAGAACAAAGAAGTGATATTTTCCAAACAAACATGGATTCT
2081 CTGCCGGGTGCAGTGGCTCAGCCTGTAATACCAGCCTCCACTTTGGGAGTCTGAGGTGGGAGTATTGCTTGAGCTCAAGA
2161 GTTGGAGAACAGCCTGGGCAACATGGTGAGACCTGGTCTTTACAAAAATTTTTTTGGCCGGACGCAGTGGCTCACACCTG
2241 TAATCCCAGCACTTTGGGAGGCCGAGGCAGGTTGATCATGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAA
2321 CCCCGTCTTTACTAAAAATACAAAAATTAGCTGGGAGTGGTGGCGTGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGG
2401 CAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGGCGAGATCACGCCACTACACTCCAGCCTGGCGACAGAG
2481 CAAGACTCTCTCAAAAAAAAAAAAAAAAAATTTTTTTTTTAAATGGGCTGGGCATGGTGGCTTGTGCCTGTAGTCTCAGC
2561 AACTTGGGAGGCTTAAGTAGTAGGATCGCTTGAGCCTGGGAGGTTGAGGCTGCAGTGAGCTGTGATTGTGCCACTGTGCT
2641 TCAGCTTGAGTGACAGAGTGAGACCCTCCTGACTCAAAACAAAAAACATGGTTTCTCCTCTCTCTCCTGTCTTCTTACTC
2721 TCTATCCCATTTGATGTAGTGATTTTTAAATGCTTTTGTAAGTTAATTCTTAACACAAAAGAGACATTGTAATGAGGCAC
2801 ACCACTAAAGTGAGCATGCCCAATTAAAACCAGTGTAATATAGGATAAGAAAATCTGATTTTTCAAAAAAGATACTCTAC
2881 ATAAAGAATCCTTCATATAAAAAGTTCTTTCTTGTAGTACATTTAAAGTTTTAATTCACTCATGTATAACTGAGAGTTCC
2961 TTTGAGCCCTTTTTAGGCAGGGAGGCATGTCTGTCATCTAGCGTGTGGCCCAGTAAGTGATTATTACATTGGAATCAGTT
3041 TTTCAGTCTTTTAAAATAAATTCTGTGCCATAAGAATAAAAGATAAAGAGAAAAATTAATGTTAACTATTTTTAGCTTAT
3121 TATAACTATGTCAACAAGTGTTTATTAATACCTATTATGGGAAAGTCACTGTGGTTGGCATTGAAAATTACATCATCTTT
3201 AAAGCAGTATTTGTCCCCAGATGGACTCATCACTAGCAAAGACTAGGTTCATTGGAAGGCATAGGGTGAGAGAATGGGAA
3281 GATGAAGTGGAGGCGGGTTGTTAAAGTGCTGTCAGTGAGTGATTTTGTCTACTTGAATAATGGTCCATGTTTGGGGGCAT
3361 ATTGTGTTTCATAAGAAGTGAAAGGTATTTGCAAAGTAAGCTACAAATGACCCATAAATCTGTTAACAACAGTCCTTAAT
3441 ATGCAAAGATGAAAAACAAGCATTACTGCTACCCAAAGGGAACTGGTGCTTGGTGATGTGCAGATGGGGCTGTTGGTTAA
3521 GAGAGCTATTACAGGTTTTCTCTCTTAGGTTTCATAGGAGGTAGTTACTGAGATGAGATTGTTTTATCTTTTTGAATACA
3601 GATCTCTTGTCTTGAGTTAGTTCTGAGGATGGGAGTAATAAAGGAGTTTTTTGTTTTTTTGTTTGTTTGTTTGTTTTGGC
3681 TCCTTAGTAATACTCCTCTGACATTTATTTCTATTATTCTTCAAAGAAAGGAAACCAACTGAAATGTTTGCTTTAACAAA
3761 CATTTTAATAAGTTCTCTGGGTTTTTTTTTCCCCTTTTAAAAAAATTAGCATATACCATAGCAATAAAAGAACTAATGTT
3841 AACTATTGTATGCTACAACTTAAGTGATTTTTCTAAAGAAGCACAATGTCATTGAAAGTATTATTGAAAAGGATCATAGT
3921 CACATTGAATTTGTGAAGGCCAAAGAAATTGAAGGGAGTGATATTTTCATTTTATGATATTCACATATTTAGTAAATTTT
4001 GTGTACAAGAATACCAGGCAGAGTGTTTTACCCATGGAAACAGGTTTCAGATTACTTTATTTTTACTGTTAGAGTCTCAA
4081 GTTTAGAAATGCTAACACTTAAATCAGTTTTTTTCTCACTATACTTGAAGATTGTTAATATTTTGATATCTTCCTAGCTT
4161 GATGAATTTAAACATATCTTCAGATCTGTGACAGTGACAGCCAATAGGACTGATAATATTAGCTTCAAACCAATAATATC
4241 CAGGGTTAAAATAAAAATCATAGTGAAAGTACGATTGTAAAATTATGCTATATTAACTTTTAAGTCTGTAATAACTTGAC
4321 ATCAAAATGTTATGTAATTACCATAAATAATGGCTAGCGAGAACATCTTTGGAAATTCTCAAATTACCTTTCTTACTACA
4401 CTGTTTGCAGAATGAATGTAGAAATGATCCTGTTAGCTTTCTGAATGTTCTGTGGTTGAATGTGTTTTTGCTTAAATAAA
4481 GCTTTTGGTATTTGTTTAAATTACACTTCTTGAGAAGTGGAAATTTTAGGATCATCTTTGCTTTGTTTCAGTTTTGTGAT
4561 TTTTGAAATGAATGTTTAGTTTACTGAGCCAGTTGGTCATTTCTTCCTCATGTCGTTAAGTCCAGTGAGTAAGCCTGAAC
4641 TGTGAATAAATTACCAAAAACTTGCTTAGAATTTCATTTTGAAGCAATTTGCTAATATTTGAAGTGTATACACATTTGTA
4721 GTTATGTTAGAAATTGTATTGTACTAAGAATGTAATCAATGTCTACTTTAGTTGTAAACATTTCTGATGTCAAAACTTTA
4801 TTCATTACTGTTGATTTTAAGAATAAGAAATCACTGCCTAAATATTACCAAAAGCCACTGTCTCTACCCGAACTTCCCAG
4881 TTTGGGAAAGAATCGTTAGATAAAACAAAGGCTCTGCCCTTTCTGATACCAAACTCCACAGATACTTTCTCACATCTTTT
4961 AAAACATTTTGCAATAACATATTGTTTATAGGAAGTTTACGGGGTATGCAATGATTAAAACTTTTAAGTGAATTGATAGT
5041 TGCAAAAGAAAGGATAATATTTAAGGTCAGTGAGTAGCAAGACAATCTAAAGTTTCTGTAATATCTGGCTCTCTGTTAAT
5121 TATAGAGCAAAGTTTCCCTTACAGAATCCTTTTATGAACAGCAAGCTAGAGTCTATCCCTAGTGGTTATAGCACCTGCTG
5201 CGTTTTTCAGGAGACAGTTAGGCCAGGGTGATTTGAATGGATAGATGTGCTGTTTTGCCTGCTTGTAGAATTCAGCCCAG
5281 TCTTTGGTCTCTCTCTCTCTCTCCCTCCTCCACCTCTCCCTCTCTCTTCTTCTGCACCAGAGCCTAAGGCTGCGCCACCA
5361 AGATGCGTCATTTTTTCCAGAGGCTTCTTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTGTTGCCCAGGCTGGCATGCAG
5441 TGCTGCAATCTTGGCTGACTGCAACTTCCACCTCCCGTGTTCACACGAGTCTTTTGCCTCAGCCTCTGGATTAGCTGGGA
5521 TTACAGGCACGTGCCACCATGCCTAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAGT
5601 CTCAAACTCCTGACCTTAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACCGTGTCCT
5681 GCCCAGACATATCAAATTTGACAGGTATTGTATACCCTTTGGATCTTTAGGAATTAATTTTTGCCTCTGTCACTCAGCTT
5761 TGTATATTTTGAAATGGAGATAAGTATAGGGAGGTCTTGGAAGGAAAATTGCCAGAATTCCCAAACCATGTAACACTCAT
5841 TGAGAATTCCAGATCCATTATATCTAAAGGGCAAGTGAAGGAAACAGTATTGTGAACTGGGTATAACTCCTTGGTTCTTA
5921 ACTAGTACATTCTTAATCTGTGAGACCCAAAGGTTGATAAACAATAATTTAAGATTGTACAGTACTCTAAACGTCTGCAA
6001 AGGTCTAGATGTTATCAGTATCACTAGTTTTTATTTCTGCCAGTAGCTCCCTTTTAGGTTACATTGTTGTCCTCTTTCCA
6081 GTGTCGCATCTGTCATTGGTTTTTCACTATGGCAAGTTCATTAAAAAGCTTGCTCCATTGTTATCTTCAAGTAATGCCCA
6161 TAAGGAGATGGAAGATATCTGAGACAATTAAGGCTTTAGCTTCTAGGCAAGAGAAATAACGTTGCATTAAATTTCAAGTT
6241 TCTTTCTGCTAGACTTGAATGTGTCTAGCCACTCTAATTTATGGGGGCTTTTGGTTTTTTCCTATTGTACTTTGTATGTA
6321 GAATTGTTTTGAAATATCAAGCATATTTACTTTGAATTTGAACTCTTTCTTAATTTTGTATTTATCCTTTGAATAAAATG
6401 TAAATCCAATATTTATTATT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGCCGGUCGG---GACGACAGUCg 5'
            ||| : |::    ||||||||| 
Target 5' ggCGGGTTGTTAAAGTGCTGTCAGt 3'
 3292 - 3316 152.00 -22.50
2 
miRNA  3' ucgccGGUCGGGACGACAGUCg 5'
               ::| :::| ||||:|| 
Target 5' ttactTTATTTTTACTGTTAGa 3'
 4052 - 4073 133.00 -10.20
3 
miRNA  3' ucGCCGGUCGGGAC-GACAGUcg 5'
            | |  || | || ||||||  
Target 5' ggCAGGGAGGCATGTCTGTCAtc 3'
 2976 - 2998 132.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
896480 1 ClinVar
208585 22 ClinVar
336871 52 ClinVar
336870 86 ClinVar
336869 112 ClinVar
336868 169 ClinVar
896479 176 ClinVar
336867 186 ClinVar
336866 196 ClinVar
895039 272 ClinVar
336865 383 ClinVar
336864 395 ClinVar
336863 454 ClinVar
336862 603 ClinVar
895038 635 ClinVar
336861 666 ClinVar
899163 673 ClinVar
336860 689 ClinVar
336859 800 ClinVar
899162 819 ClinVar
336858 867 ClinVar
336857 870 ClinVar
898044 977 ClinVar
336856 1053 ClinVar
898043 1057 ClinVar
336855 1083 ClinVar
336854 1085 ClinVar
336853 1090 ClinVar
336852 1168 ClinVar
336851 1244 ClinVar
336850 1401 ClinVar
336849 1425 ClinVar
336848 1461 ClinVar
896412 1464 ClinVar
336847 1540 ClinVar
336846 1639 ClinVar
896411 1738 ClinVar
336845 1741 ClinVar
336844 1869 ClinVar
894972 1901 ClinVar
336843 1988 ClinVar
894971 2017 ClinVar
336842 2219 ClinVar
336841 2223 ClinVar
336840 2269 ClinVar
336839 2310 ClinVar
899103 2323 ClinVar
336838 2325 ClinVar
336837 2364 ClinVar
336836 2368 ClinVar
899102 2410 ClinVar
899101 2418 ClinVar
336835 2420 ClinVar
897971 2428 ClinVar
336834 2464 ClinVar
336833 2473 ClinVar
897970 2498 ClinVar
897969 2508 ClinVar
336832 2509 ClinVar
336831 2510 ClinVar
336830 2511 ClinVar
897968 2511 ClinVar
896357 2622 ClinVar
896356 2634 ClinVar
336829 2669 ClinVar
336828 2685 ClinVar
336827 2720 ClinVar
896355 2722 ClinVar
896354 2758 ClinVar
894913 2907 ClinVar
336826 2916 ClinVar
336825 3019 ClinVar
336824 3021 ClinVar
336823 3065 ClinVar
336822 3090 ClinVar
336820 3091 ClinVar
336821 3091 ClinVar
336819 3134 ClinVar
336818 3285 ClinVar
899039 3287 ClinVar
336816 3345 ClinVar
336817 3345 ClinVar
336815 3385 ClinVar
897903 3438 ClinVar
336814 3576 ClinVar
336813 3579 ClinVar
336812 3679 ClinVar
336811 3781 ClinVar
336810 3806 ClinVar
897902 3921 ClinVar
336809 3990 ClinVar
336808 4053 ClinVar
336807 4059 ClinVar
896284 4121 ClinVar
336806 4229 ClinVar
896283 4230 ClinVar
336805 4259 ClinVar
336804 4274 ClinVar
896282 4375 ClinVar
894844 4403 ClinVar
336803 4520 ClinVar
336802 4650 ClinVar
894843 4724 ClinVar
336801 4730 ClinVar
336800 4761 ClinVar
336799 4826 ClinVar
898973 4830 ClinVar
336798 4944 ClinVar
336797 5001 ClinVar
336796 5004 ClinVar
336795 5199 ClinVar
336794 5261 ClinVar
336793 5304 ClinVar
336792 5325 ClinVar
898972 5353 ClinVar
336791 5354 ClinVar
897821 5390 ClinVar
336790 5402 ClinVar
336789 5432 ClinVar
897820 5437 ClinVar
897819 5448 ClinVar
897818 5464 ClinVar
897817 5476 ClinVar
336788 5514 ClinVar
336787 5673 ClinVar
896217 5713 ClinVar
896216 5764 ClinVar
896215 5800 ClinVar
896214 5820 ClinVar
896213 5884 ClinVar
336786 5902 ClinVar
896212 6003 ClinVar
336785 6016 ClinVar
896211 6039 ClinVar
336784 6085 ClinVar
336783 6094 ClinVar
895936 6102 ClinVar
336782 6126 ClinVar
895935 6136 ClinVar
336781 6284 ClinVar
336780 6366 ClinVar
898898 6378 ClinVar
COSN30490550 1 COSMIC
COSN30479122 23 COSMIC
COSN26977337 53 COSMIC
COSN22466028 54 COSMIC
COSN28844253 97 COSMIC
COSN30758094 98 COSMIC
COSN30115153 137 COSMIC
COSN30126832 154 COSMIC
COSN31539726 171 COSMIC
COSN28872079 178 COSMIC
COSN15325371 251 COSMIC
COSN31585199 266 COSMIC
COSN21366019 319 COSMIC
COSN20873839 759 COSMIC
COSN32056186 1224 COSMIC
COSN1241873 1695 COSMIC
COSN28487403 1973 COSMIC
COSN22734839 1986 COSMIC
COSN22612686 2333 COSMIC
COSN21758291 2349 COSMIC
COSN27178227 2473 COSMIC
COSN7992458 2587 COSMIC
COSN16885269 2752 COSMIC
COSN29890508 2845 COSMIC
COSN5509481 2872 COSMIC
COSN29639171 3103 COSMIC
COSN5509480 3435 COSMIC
COSN28030267 3466 COSMIC
COSN5955142 3509 COSMIC
COSN21256813 3554 COSMIC
COSN1852730 3958 COSMIC
COSN5955141 4939 COSMIC
COSN9385071 5239 COSMIC
COSN30144354 5259 COSMIC
COSN20172848 5353 COSMIC
COSN5031678 5372 COSMIC
COSN19179165 5753 COSMIC
COSN19153319 6148 COSMIC
COSN5509479 6377 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs143011449 1 dbSNP
rs749977760 6 dbSNP
rs767213495 7 dbSNP
rs370755114 10 dbSNP
rs1435710512 14 dbSNP
rs199678034 22 dbSNP
rs762924367 23 dbSNP
rs775426556 24 dbSNP
rs769533528 31 dbSNP
rs1171606453 34 dbSNP
rs745676352 35 dbSNP
rs1393641115 38 dbSNP
rs773296453 44 dbSNP
rs1477288270 46 dbSNP
rs772408871 47 dbSNP
rs1176354844 50 dbSNP
rs554824301 52 dbSNP
rs112106185 56 dbSNP
rs1322027375 58 dbSNP
rs933898632 58 dbSNP
rs866221798 64 dbSNP
rs922482808 69 dbSNP
rs1332619451 80 dbSNP
rs749695845 82 dbSNP
rs1221556129 84 dbSNP
rs886056259 86 dbSNP
rs775976340 89 dbSNP
rs1029303387 96 dbSNP
rs1266381453 98 dbSNP
rs997790700 104 dbSNP
rs1039352448 105 dbSNP
rs1269842706 106 dbSNP
rs886056258 112 dbSNP
rs572788672 113 dbSNP
rs553039784 120 dbSNP
rs1199282027 122 dbSNP
rs1413313985 123 dbSNP
rs1473890332 128 dbSNP
rs942341624 131 dbSNP
rs1361564297 134 dbSNP
rs565255342 143 dbSNP
rs1452525839 153 dbSNP
rs6729690 169 dbSNP
rs1018936577 171 dbSNP
rs1428235397 176 dbSNP
rs1402837442 177 dbSNP
rs1302368224 178 dbSNP
rs1388735694 185 dbSNP
rs886056257 186 dbSNP
rs1005760133 190 dbSNP
rs886056256 196 dbSNP
rs745878169 208 dbSNP
rs946940638 210 dbSNP
rs1243143222 219 dbSNP
rs1354562288 222 dbSNP
rs573791118 251 dbSNP
rs1222197632 253 dbSNP
rs1253070808 259 dbSNP
rs1047196639 266 dbSNP
rs761054402 271 dbSNP
rs1199325249 277 dbSNP
rs988289992 281 dbSNP
rs960957343 282 dbSNP
rs1234487759 286 dbSNP
rs753140594 292 dbSNP
rs1035244162 300 dbSNP
rs1369819059 303 dbSNP
rs1422428215 309 dbSNP
rs1162693389 316 dbSNP
rs980787959 317 dbSNP
rs969357404 318 dbSNP
rs1296405747 320 dbSNP
rs930062029 325 dbSNP
rs906595315 327 dbSNP
rs1017045694 332 dbSNP
rs1315007395 334 dbSNP
rs1380848947 345 dbSNP
rs1245525811 358 dbSNP
rs1227749913 370 dbSNP
rs1046461105 373 dbSNP
rs1275725142 376 dbSNP
rs557212171 379 dbSNP
rs886056255 383 dbSNP
rs915868958 386 dbSNP
rs1202983699 388 dbSNP
rs1056119464 391 dbSNP
rs537215984 395 dbSNP
rs747230369 406 dbSNP
rs571773861 408 dbSNP
rs1181928054 422 dbSNP
rs1247971126 424 dbSNP
rs1383433241 437 dbSNP
rs1025900887 440 dbSNP
rs925792385 441 dbSNP
rs977202208 447 dbSNP
rs1431433914 451 dbSNP
rs796956367 454 dbSNP
rs942399049 462 dbSNP
rs935641211 466 dbSNP
rs922345259 473 dbSNP
rs976423394 477 dbSNP
rs778178175 481 dbSNP
rs1429309330 508 dbSNP
rs759039158 513 dbSNP
rs912948547 514 dbSNP
rs1298643270 520 dbSNP
rs1367666574 532 dbSNP
rs1165861053 535 dbSNP
rs1445627910 537 dbSNP
rs1313295313 539 dbSNP
rs988731221 541 dbSNP
rs1212871667 543 dbSNP
rs1803646 544 dbSNP
rs531744094 558 dbSNP
rs551892945 563 dbSNP
rs563131993 567 dbSNP
rs952966900 569 dbSNP
rs1026254766 589 dbSNP
rs549602480 591 dbSNP
rs1433639055 594 dbSNP
rs78097440 603 dbSNP
rs906649244 605 dbSNP
rs1017344846 616 dbSNP
rs552212484 623 dbSNP
rs1428971468 624 dbSNP
rs549443023 632 dbSNP
rs1025699072 633 dbSNP
rs1046512995 635 dbSNP
rs1281968162 637 dbSNP
rs529605124 640 dbSNP
rs1283474190 653 dbSNP
rs1222354654 656 dbSNP
rs377637080 660 dbSNP
rs543343212 666 dbSNP
rs1018182082 672 dbSNP
rs533310642 673 dbSNP
rs1201368278 676 dbSNP
rs1427086041 677 dbSNP
rs1409364713 681 dbSNP
rs1368880308 683 dbSNP
rs886056254 689 dbSNP
rs1399117836 697 dbSNP
rs1425639876 702 dbSNP
rs1053765052 704 dbSNP
rs904401384 715 dbSNP
rs564680547 716 dbSNP
rs925875666 723 dbSNP
rs1009877957 725 dbSNP
rs1390506424 731 dbSNP
rs1345423759 743 dbSNP
rs1161870520 750 dbSNP
rs138617122 762 dbSNP
rs1288362502 764 dbSNP
rs1056885669 765 dbSNP
rs1221672601 769 dbSNP
rs1321998882 770 dbSNP
rs1224422031 791 dbSNP
rs2667 800 dbSNP
rs150138800 805 dbSNP
rs542227226 807 dbSNP
rs772949007 810 dbSNP
rs753245475 819 dbSNP
rs1471980142 837 dbSNP
rs187563377 838 dbSNP
rs1468695413 845 dbSNP
rs1201157630 848 dbSNP
rs922397739 850 dbSNP
rs1176734887 854 dbSNP
rs1414776920 855 dbSNP
rs72905155 867 dbSNP
rs1162055996 869 dbSNP
rs77753566 870 dbSNP
rs910895651 877 dbSNP
rs983785131 881 dbSNP
rs192348057 888 dbSNP
rs1430811882 890 dbSNP
rs1334552929 900 dbSNP
rs1439366641 905 dbSNP
rs953103151 908 dbSNP
rs1025893425 920 dbSNP
rs187922236 928 dbSNP
rs1289254850 930 dbSNP
rs994375972 932 dbSNP
rs1205735244 937 dbSNP
rs535100185 940 dbSNP
rs1025112848 941 dbSNP
rs1352749660 956 dbSNP
rs918695965 957 dbSNP
rs182921837 977 dbSNP
rs976797840 980 dbSNP
rs965224407 984 dbSNP
rs1285389033 985 dbSNP
rs1181998084 991 dbSNP
rs1384954058 992 dbSNP
rs555753501 994 dbSNP
rs760154573 997 dbSNP
rs1321974489 1010 dbSNP
rs1000861696 1013 dbSNP
rs1384342348 1021 dbSNP
rs1327521672 1024 dbSNP
rs904475178 1032 dbSNP
rs1041615468 1034 dbSNP
rs535434783 1053 dbSNP
rs901023684 1056 dbSNP
rs1456201179 1066 dbSNP
rs536196849 1068 dbSNP
rs886056253 1083 dbSNP
rs75177078 1085 dbSNP
rs886056252 1090 dbSNP
rs942465371 1114 dbSNP
rs1279359010 1115 dbSNP
rs910960296 1117 dbSNP
rs984225117 1136 dbSNP
rs1242730588 1148 dbSNP
rs930991822 1149 dbSNP
rs918216799 1154 dbSNP
rs550053473 1157 dbSNP
rs1262285999 1159 dbSNP
rs533395665 1162 dbSNP
rs886056251 1168 dbSNP
rs3182038 1169 dbSNP
rs570689496 1194 dbSNP
rs1265058577 1197 dbSNP
rs970939178 1198 dbSNP
rs1224265028 1204 dbSNP
rs948216223 1205 dbSNP
rs1382504016 1210 dbSNP
rs551222711 1224 dbSNP
rs1025166638 1226 dbSNP
rs990985744 1232 dbSNP
rs959751503 1236 dbSNP
rs1325640589 1242 dbSNP
rs73937246 1244 dbSNP
rs1001315308 1248 dbSNP
rs1433254794 1251 dbSNP
rs902527253 1254 dbSNP
rs1327411245 1263 dbSNP
rs1262661669 1274 dbSNP
rs1330010977 1288 dbSNP
rs1207131978 1297 dbSNP
rs1260029160 1298 dbSNP
rs1446820156 1303 dbSNP
rs1200073622 1304 dbSNP
rs1271656055 1314 dbSNP
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rs1320420049 1330 dbSNP
rs1020880355 1340 dbSNP
rs930002177 1360 dbSNP
rs1010125073 1375 dbSNP
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rs1303593497 1387 dbSNP
rs1419888070 1390 dbSNP
rs1347315848 1391 dbSNP
rs1414552149 1398 dbSNP
rs868495183 1401 dbSNP
rs1423964695 1417 dbSNP
rs781269204 1425 dbSNP
rs1241405786 1427 dbSNP
rs1259154073 1429 dbSNP
rs1476249761 1429 dbSNP
rs1350294361 1437 dbSNP
rs911279863 1457 dbSNP
rs146949335 1461 dbSNP
rs542613375 1462 dbSNP
rs889572078 1464 dbSNP
rs1244965233 1468 dbSNP
rs1210824712 1470 dbSNP
rs1267505161 1477 dbSNP
rs1048144920 1484 dbSNP
rs1441930838 1487 dbSNP
rs1021991420 1493 dbSNP
rs1361688598 1493 dbSNP
rs1452687987 1494 dbSNP
rs1367222617 1498 dbSNP
rs931022311 1499 dbSNP
rs1276705878 1500 dbSNP
rs1216579152 1502 dbSNP
rs918269337 1511 dbSNP
rs1010143918 1512 dbSNP
rs955935279 1515 dbSNP
rs528845457 1522 dbSNP
rs768770390 1525 dbSNP
rs1035356174 1527 dbSNP
rs745918107 1529 dbSNP
rs886056250 1540 dbSNP
rs1317543086 1557 dbSNP
rs1357774268 1560 dbSNP
rs1222263908 1564 dbSNP
rs1275944076 1564 dbSNP
rs1481938023 1571 dbSNP
rs563619501 1574 dbSNP
rs1226716738 1577 dbSNP
rs75422296 1585 dbSNP
rs1247807082 1588 dbSNP
rs141141702 1592 dbSNP
rs1183846157 1598 dbSNP
rs1386819111 1603 dbSNP
rs1442515017 1608 dbSNP
rs949640087 1635 dbSNP
rs1355025785 1637 dbSNP
rs886056249 1639 dbSNP
rs577943102 1642 dbSNP
rs1012852915 1646 dbSNP
rs767228540 1649 dbSNP
rs888608616 1674 dbSNP
rs1453593614 1683 dbSNP
rs1448067927 1705 dbSNP
rs1380914415 1708 dbSNP
rs1245679459 1715 dbSNP
rs1296823363 1717 dbSNP
rs1309709198 1721 dbSNP
rs1358105419 1725 dbSNP
rs557996332 1738 dbSNP
rs886056248 1741 dbSNP
rs1411276131 1749 dbSNP
rs1049161898 1757 dbSNP
rs1456954266 1758 dbSNP
rs1370849303 1766 dbSNP
rs930247873 1768 dbSNP
rs1459746946 1773 dbSNP
rs1182747961 1774 dbSNP
rs763291933 1775 dbSNP
rs1430180035 1777 dbSNP
rs1168266690 1778 dbSNP
rs991431414 1780 dbSNP
rs540498687 1781 dbSNP
rs540839837 1782 dbSNP
rs1182397366 1786 dbSNP
rs911332660 1790 dbSNP
rs1032886884 1797 dbSNP
rs775845964 1805 dbSNP
rs1289756824 1819 dbSNP
rs151131951 1820 dbSNP
rs555537488 1832 dbSNP
rs1020932674 1838 dbSNP
rs997457328 1840 dbSNP
rs1223578414 1843 dbSNP
rs1264533043 1851 dbSNP
rs535884271 1853 dbSNP
rs1209008985 1867 dbSNP
rs1274269269 1868 dbSNP
rs886056247 1869 dbSNP
rs1486745445 1876 dbSNP
rs1184608017 1878 dbSNP
rs770135211 1882 dbSNP
rs914406813 1898 dbSNP
rs1480760277 1899 dbSNP
rs989010524 1901 dbSNP
rs1203388913 1902 dbSNP
rs1019524392 1908 dbSNP
rs1469437793 1909 dbSNP
rs1160147517 1910 dbSNP
rs1007179754 1914 dbSNP
rs1362075517 1915 dbSNP
rs1288714395 1918 dbSNP
rs191689660 1925 dbSNP
rs1284585018 1932 dbSNP
rs1048674435 1935 dbSNP
rs1228223742 1936 dbSNP
rs1218241933 1940 dbSNP
rs1377694618 1942 dbSNP
rs995274055 1944 dbSNP
rs1318410950 1952 dbSNP
rs1213374140 1956 dbSNP
rs955946756 1956 dbSNP
rs1490475551 1969 dbSNP
rs1035575942 1975 dbSNP
rs1350655789 1977 dbSNP
rs896890279 1983 dbSNP
rs1177902019 1985 dbSNP
rs1427527746 1986 dbSNP
rs1158751815 1988 dbSNP
rs1399245997 1988 dbSNP
rs751417979 1988 dbSNP
rs776830195 1988 dbSNP
rs1366600807 1990 dbSNP
rs1036727924 1992 dbSNP
rs1301875804 1993 dbSNP
rs1165267058 1995 dbSNP
rs1435105219 2005 dbSNP
rs981121954 2010 dbSNP
rs949025783 2014 dbSNP
rs1221726525 2021 dbSNP
rs1308195352 2022 dbSNP
rs1359924918 2026 dbSNP
rs556466913 2029 dbSNP
rs1411607672 2032 dbSNP
rs1224497666 2053 dbSNP
rs1289476351 2062 dbSNP
rs1451025869 2074 dbSNP
rs143394821 2079 dbSNP
rs1055385557 2083 dbSNP
rs1472959897 2085 dbSNP
rs1005967754 2086 dbSNP
rs1180335605 2088 dbSNP
rs938230811 2090 dbSNP
rs1446794500 2097 dbSNP
rs570778619 2100 dbSNP
rs1390636762 2103 dbSNP
rs1266384829 2105 dbSNP
rs1328876472 2120 dbSNP
rs1355793849 2124 dbSNP
rs1221372298 2125 dbSNP
rs1439519362 2135 dbSNP
rs1330229787 2136 dbSNP
rs1383134330 2137 dbSNP
rs1320441637 2141 dbSNP
rs911723599 2155 dbSNP
rs1312736620 2165 dbSNP
rs1286962902 2167 dbSNP
rs1027163693 2181 dbSNP
rs1229637457 2183 dbSNP
rs1215102388 2184 dbSNP
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rs925490481 2191 dbSNP
rs1407580721 2201 dbSNP
rs1347057121 2205 dbSNP
rs1198138123 2216 dbSNP
rs149217357 2219 dbSNP
rs966793320 2220 dbSNP
rs145374217 2223 dbSNP
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rs565778297 2228 dbSNP
rs1463585860 2246 dbSNP
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rs1477482622 2250 dbSNP
rs188778085 2263 dbSNP
rs1334385731 2264 dbSNP
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rs528922800 2271 dbSNP
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rs61159728 2510 dbSNP
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rs60949141 2511 dbSNP
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rs924885535 3842 dbSNP
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rs987289268 4689 dbSNP
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rs1249453066 4912 dbSNP
rs1480251201 4916 dbSNP
rs1435641545 4917 dbSNP
rs899379657 4926 dbSNP
rs112572296 4944 dbSNP
rs1424601582 4956 dbSNP
rs940677774 4964 dbSNP
rs1168744486 4966 dbSNP
rs1402579579 4971 dbSNP
rs1466900712 4972 dbSNP
rs907993991 4979 dbSNP
rs1322560461 4981 dbSNP
rs1412384138 4982 dbSNP
rs1311812708 4992 dbSNP
rs987508037 4998 dbSNP
rs1383602684 5000 dbSNP
rs13396883 5001 dbSNP
rs560585699 5004 dbSNP
rs1388124359 5011 dbSNP
rs1282294519 5013 dbSNP
rs1157241223 5028 dbSNP
rs1210236397 5039 dbSNP
rs921788905 5045 dbSNP
rs1489373936 5050 dbSNP
rs1184958584 5092 dbSNP
rs1261323415 5096 dbSNP
rs756019986 5102 dbSNP
rs974945788 5103 dbSNP
rs1435172343 5105 dbSNP
rs1178778868 5114 dbSNP
rs1393798080 5115 dbSNP
rs1434699390 5119 dbSNP
rs1426285273 5125 dbSNP
rs1360564720 5126 dbSNP
rs1454917677 5127 dbSNP
rs1286701083 5130 dbSNP
rs1191039711 5131 dbSNP
rs768013403 5142 dbSNP
rs1387129991 5155 dbSNP
rs1305422149 5175 dbSNP
rs1303076918 5179 dbSNP
rs1233527448 5182 dbSNP
rs957992441 5183 dbSNP
rs1318758241 5184 dbSNP
rs1213749700 5185 dbSNP
rs1260361169 5195 dbSNP
rs1195871159 5196 dbSNP
rs569509701 5196 dbSNP
rs1209992296 5197 dbSNP
rs1464974378 5198 dbSNP
rs1259740311 5200 dbSNP
rs886056235 5200 dbSNP
rs1213168548 5201 dbSNP
rs977778648 5205 dbSNP
rs1401875597 5209 dbSNP
rs749869068 5215 dbSNP
rs1156396283 5222 dbSNP
rs1344221627 5225 dbSNP
rs1301701517 5242 dbSNP
rs1458136569 5246 dbSNP
rs1327632831 5247 dbSNP
rs1439923206 5252 dbSNP
rs1309814195 5257 dbSNP
rs1233375631 5259 dbSNP
rs780713952 5261 dbSNP
rs756856253 5267 dbSNP
rs751181133 5275 dbSNP
rs1024765239 5277 dbSNP
rs540275880 5286 dbSNP
rs181256419 5289 dbSNP
rs1271534109 5293 dbSNP
rs1468275320 5295 dbSNP
rs1199672004 5296 dbSNP
rs763718729 5297 dbSNP
rs759930816 5299 dbSNP
rs1376900103 5304 dbSNP
rs1469104333 5304 dbSNP
rs747325928 5304 dbSNP
rs777909704 5304 dbSNP
rs894848385 5305 dbSNP
rs200611214 5319 dbSNP
rs1034532925 5322 dbSNP
rs867127128 5325 dbSNP
rs561614233 5328 dbSNP
rs1361328038 5334 dbSNP
rs754166434 5334 dbSNP
rs1287240232 5335 dbSNP
rs575765484 5353 dbSNP
rs113138427 5354 dbSNP
rs766839214 5355 dbSNP
rs1037904098 5361 dbSNP
rs1379931339 5362 dbSNP
rs1235234793 5363 dbSNP
rs1291599388 5365 dbSNP
rs544898680 5366 dbSNP
rs1433259017 5367 dbSNP
rs1436542900 5378 dbSNP
rs575944979 5383 dbSNP
rs200306923 5387 dbSNP
rs940728850 5390 dbSNP
rs565495497 5393 dbSNP
rs1238579070 5401 dbSNP
rs879750913 5402 dbSNP
rs886056234 5402 dbSNP
rs900165415 5402 dbSNP
rs111295641 5406 dbSNP
rs1039232128 5409 dbSNP
rs1168251944 5409 dbSNP
rs1392514437 5415 dbSNP
rs886438707 5422 dbSNP
rs1189806077 5423 dbSNP
rs886056233 5432 dbSNP
rs1416697396 5433 dbSNP
rs1311198712 5434 dbSNP
rs1449430341 5435 dbSNP
rs1400879876 5440 dbSNP
rs1051676273 5448 dbSNP
rs115361740 5464 dbSNP
rs1279872872 5465 dbSNP
rs1177466538 5470 dbSNP
rs921980900 5476 dbSNP
rs1256242317 5477 dbSNP
rs773373681 5479 dbSNP
rs1038882218 5480 dbSNP
rs189850080 5482 dbSNP
rs1209829263 5483 dbSNP
rs1345509113 5484 dbSNP
rs767679164 5486 dbSNP
rs183623225 5487 dbSNP
rs936485410 5500 dbSNP
rs886056232 5514 dbSNP
rs1401382167 5519 dbSNP
rs925222543 5522 dbSNP
rs977997400 5525 dbSNP
rs1430454031 5526 dbSNP
rs1275863069 5530 dbSNP
rs966407746 5531 dbSNP
rs1380084873 5533 dbSNP
rs1232693067 5536 dbSNP
rs758312130 5542 dbSNP
rs1280267920 5545 dbSNP
rs1312517460 5572 dbSNP
rs1205214278 5573 dbSNP
rs1271528703 5584 dbSNP
rs1197881506 5586 dbSNP
rs917593121 5598 dbSNP
rs533594691 5630 dbSNP
rs1455442630 5631 dbSNP
rs992202446 5634 dbSNP
rs1394416420 5643 dbSNP
rs1470515105 5664 dbSNP
rs959165367 5666 dbSNP
rs1160435616 5669 dbSNP
rs1169678625 5672 dbSNP
rs191479634 5673 dbSNP
rs1033824657 5674 dbSNP
rs1397079889 5679 dbSNP
rs1167618219 5689 dbSNP
rs1425063812 5692 dbSNP
rs1256375582 5703 dbSNP
rs1336943722 5704 dbSNP
rs1239125022 5713 dbSNP
rs1186742892 5721 dbSNP
rs1484514088 5728 dbSNP
rs1348059664 5734 dbSNP
rs1204143187 5744 dbSNP
rs1001738837 5755 dbSNP
rs187793362 5762 dbSNP
rs1044784 5763 dbSNP
rs1205694415 5768 dbSNP
rs1252289236 5770 dbSNP
rs1338596756 5774 dbSNP
rs1438381822 5775 dbSNP
rs537761645 5776 dbSNP
rs568780403 5780 dbSNP
rs963871918 5791 dbSNP
rs1469712486 5794 dbSNP
rs1044785 5797 dbSNP
rs1247018108 5800 dbSNP
rs1420304260 5829 dbSNP
rs1460205456 5836 dbSNP
rs1016508768 5838 dbSNP
rs1322435192 5840 dbSNP
rs1292786997 5845 dbSNP
rs1397813884 5850 dbSNP
rs1005093465 5861 dbSNP
rs774631396 5864 dbSNP
rs1333424454 5871 dbSNP
rs886656498 5877 dbSNP
rs1231657884 5893 dbSNP
rs116374505 5899 dbSNP
rs886056231 5902 dbSNP
rs1336580195 5908 dbSNP
rs997900583 5910 dbSNP
rs900606149 5911 dbSNP
rs1339868952 5914 dbSNP
rs1197436669 5926 dbSNP
rs1039518444 5932 dbSNP
rs936554757 5945 dbSNP
rs184837165 5964 dbSNP
rs1188835890 5966 dbSNP
rs1391180290 5974 dbSNP
rs1394909124 5976 dbSNP
rs1295836613 5978 dbSNP
rs1474378907 5987 dbSNP
rs1042208364 5992 dbSNP
rs945284205 5993 dbSNP
rs143649075 6003 dbSNP
rs991857353 6011 dbSNP
rs886056230 6016 dbSNP
rs1163661540 6030 dbSNP
rs1408684243 6035 dbSNP
rs1313016308 6037 dbSNP
rs959280184 6037 dbSNP
rs926426868 6046 dbSNP
rs1311602381 6051 dbSNP
rs1474020759 6058 dbSNP
rs1413724219 6065 dbSNP
rs974227327 6069 dbSNP
rs7642 6085 dbSNP
rs1016394061 6086 dbSNP
rs1211661914 6093 dbSNP
rs55888680 6094 dbSNP
rs1484747888 6101 dbSNP
rs950984771 6102 dbSNP
rs1262706986 6107 dbSNP
rs1430594036 6108 dbSNP
rs1488792056 6120 dbSNP
rs28613427 6122 dbSNP
rs1372994001 6123 dbSNP
rs886056229 6126 dbSNP
rs749057215 6129 dbSNP
rs1030519030 6135 dbSNP
rs1376693167 6137 dbSNP
rs1432344552 6143 dbSNP
rs1301831995 6149 dbSNP
rs997558248 6153 dbSNP
rs1383696153 6154 dbSNP
rs1211973014 6155 dbSNP
rs1331403611 6159 dbSNP
rs573841882 6161 dbSNP
rs1364334084 6165 dbSNP
rs1234886471 6169 dbSNP
rs1305560139 6175 dbSNP
rs1289232158 6183 dbSNP
rs193289228 6191 dbSNP
rs1334320290 6193 dbSNP
rs550960239 6201 dbSNP
rs1261521989 6203 dbSNP
rs531253972 6216 dbSNP
rs1487004862 6218 dbSNP
rs1387846911 6220 dbSNP
rs1454999070 6221 dbSNP
rs1394484635 6223 dbSNP
rs1393816324 6237 dbSNP
rs553789635 6239 dbSNP
rs1174819349 6248 dbSNP
rs1345396707 6253 dbSNP
rs1459428419 6257 dbSNP
rs1390327742 6265 dbSNP
rs900495897 6268 dbSNP
rs1039160457 6269 dbSNP
rs1469343500 6270 dbSNP
rs1441379095 6281 dbSNP
rs533940046 6284 dbSNP
rs1368777824 6285 dbSNP
rs903906006 6294 dbSNP
rs77992373 6295 dbSNP
rs565532016 6304 dbSNP
rs147380696 6305 dbSNP
rs775153375 6306 dbSNP
rs1318925490 6307 dbSNP
rs1200801358 6312 dbSNP
rs76778269 6314 dbSNP
rs1252301558 6316 dbSNP
rs1211832949 6321 dbSNP
rs1216019362 6345 dbSNP
rs1251667933 6351 dbSNP
rs1042259513 6354 dbSNP
rs55762541 6355 dbSNP
rs1190094538 6363 dbSNP
rs945168687 6363 dbSNP
rs115964031 6366 dbSNP
rs1056776432 6368 dbSNP
rs1461763501 6369 dbSNP
rs1348880340 6376 dbSNP
rs560039272 6378 dbSNP
rs1435721241 6380 dbSNP
rs1298710296 6386 dbSNP
rs540303810 6387 dbSNP
rs1389749541 6389 dbSNP
rs926283513 6396 dbSNP
rs1370836247 6399 dbSNP
rs1301914243 6409 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 2673.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucgccggucgggACGACAGUCg 5'
                      ||||||||| 
Target 5' -------uaaagUGCUGUCAGu 3'
 		1 - 15
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000357308.4 | 3UTR | UAAAGUGCUGUCAGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
60 hsa-miR-4526 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080216 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT100350 DDX39B DExD-box helicase 39B 2 2
MIRT445480 KDM6A lysine demethylase 6A 2 2
MIRT450233 ZNF25 zinc finger protein 25 2 2
MIRT465783 TMOD3 tropomodulin 3 2 8
MIRT466253 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT470395 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470442 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT476323 GLTSCR1L BRD4 interacting chromatin remodeling complex associated protein like 2 2
MIRT479706 CCNT1 cyclin T1 2 2
MIRT481925 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT484016 ZNF776 zinc finger protein 776 2 4
MIRT497022 INO80B INO80 complex subunit B 2 2
MIRT502526 EPHA2 EPH receptor A2 2 4
MIRT513497 SSR1 signal sequence receptor subunit 1 2 6
MIRT517846 RPS4X ribosomal protein S4, X-linked 2 4
MIRT533734 TMEM200C transmembrane protein 200C 2 2
MIRT535904 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT537537 EZR ezrin 2 2
MIRT538756 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT540307 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT545510 EPT1 selenoprotein I 2 2
MIRT548829 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT569600 TRIM29 tripartite motif containing 29 2 2
MIRT572462 ZNF516 zinc finger protein 516 2 2
MIRT575457 Ints2 integrator complex subunit 2 2 3
MIRT609411 SLC25A45 solute carrier family 25 member 45 2 2
MIRT609622 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT609666 INTS2 integrator complex subunit 2 2 3
MIRT609994 PIGS phosphatidylinositol glycan anchor biosynthesis class S 2 2
MIRT611691 NODAL nodal growth differentiation factor 2 2
MIRT615720 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT616383 C1orf87 chromosome 1 open reading frame 87 2 2
MIRT616593 KLHL9 kelch like family member 9 2 2
MIRT628162 HIP1 huntingtin interacting protein 1 2 2
MIRT628376 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT629203 PAPOLA poly(A) polymerase alpha 2 2
MIRT635006 ADPRH ADP-ribosylarginine hydrolase 2 2
MIRT645493 TRIM63 tripartite motif containing 63 2 2
MIRT646750 MUC4 mucin 4, cell surface associated 2 2
MIRT649613 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT656228 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT658196 FBXO44 F-box protein 44 2 2
MIRT661757 MICA MHC class I polypeptide-related sequence A 2 2
MIRT662866 UPF3A UPF3A, regulator of nonsense mediated mRNA decay 2 2
MIRT666738 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT690391 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT699795 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT700033 RPL22 ribosomal protein L22 2 2
MIRT701741 MTDH metadherin 2 2
MIRT702330 KMT2A lysine methyltransferase 2A 2 2
MIRT702672 IRS2 insulin receptor substrate 2 2 2
MIRT708730 LSAMP limbic system-associated membrane protein 2 2
MIRT709230 GPSM2 G protein signaling modulator 2 2 2
MIRT717503 UFL1 UFM1 specific ligase 1 2 2
MIRT718533 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT719845 MON1B MON1 homolog B, secretory trafficking associated 2 2
MIRT720957 TMEM151B transmembrane protein 151B 2 2
MIRT724816 MSX2 msh homeobox 2 2 2
MIRT725369 MTF2 metal response element binding transcription factor 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4526 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4526 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4526 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4526 Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-4526 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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