pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PIGR   
Synonyms -
Description polymeric immunoglobulin receptor
Transcript NM_002644   
Expression
Putative miRNA Targets on PIGR
3'UTR of PIGR
(miRNA target sites are highlighted)
>PIGR|NM_002644|3'UTR
   1 ACGGTGTCGCCGCCTGCTCCCTGCACCCATGACAATCACCTTCAGAATCATGTCGATCCTGGGGCCCTCAGCTCCTGGGG
  81 ACCCCACTCCCTGCTCTAACACCTGCCTAGGTTTTTCCTACTGTCCTCAGAGGCGTGCTGGTCCCCTCCTCAGTGACATC
 161 AAAGCCTGGCCTAATTGTTCCTATTGGGGATGAGGGTGGCATGAGGAGGTCCCACTTGCAACTTCTTTCTGTTGAGAGAA
 241 CCTCAGGTACGGAGAAGAATAGAGGTCCTCATGGGTCCCTTGAAGGAAGAGGGACCAGGGTGGGAGAGCTGATTGCAGAA
 321 AGGAGAGACGTGCAGCGCCCCTCTGCACCCTTATCATGGGATGTCAACAGAATTTTTCCCTCCACTCCATCCCTCCCTCC
 401 CGTCCTTCCCCTCTTCTTCTTTCCTTCCATCAAAAGATGTATTTGAATTCATACTAGAATTCAGGTGCTTTGCTAGATGC
 481 TGTGACAGGTATGCCACCAACACTGCTCACAGCCTTTCTGAGGACACCAGTGAAAGAAGCCACAGCTCTTCTTGGCGTAT
 561 TTATACTCACTGAGTCTTAACTTTTCACCAGGGGTGCTCACCTCTGCCCCTATTGGGAGAGGTCATAAAATGTCTCGAGT
 641 CCTAAGGCCTTAGGGGTCATGTATGATGAGCATACACACAGGTAATTATAAACCCACATTCTTACCATTTCACACATAAG
 721 AAAATTGAGGTTTGGAAGAGTGAAGCGTTTTTCTTTTTCTTTTTTTTTTTTGAGACGGAGTCTCTCACTGTCGCCCAGGC
 801 TGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTGACACCATTCTCCTGCCTCACCCTCCCAA
 881 GTAGCTGGGACTACAGGCGCCTGCCAGCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTA
 961 GCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCA
1041 CCGCGTCCGGCCTCTTTTTTTCTTTTCTTTTTTTTGAGACAAAGTCTCACTGTGTCACCCAGACTGGAATGCAGTGACAC
1121 AATCTCGGCTCACTGAAACCTCTGCCTTCCAGGTTCAAGCTATTCTCATGCCTCAGCCTCTCAAGTAGCTGGGACTACAG
1201 ATGTGGGCCACCATGTCTGGCTAATTTTTTTTTTTTTTTTTTTTTTTTGTAGAGACAGGGTTTCGCCATGTTGACGAGAC
1281 TGGTCTCGAACTCCTGGCCTCAAGTGATCTGCCGCCTCAGCTTCTCAAAGTACTGGGATTATATAGGCATGAGCCACTGA
1361 GCCTGGCCCTGAAGCGTTTTTCTCAAAGGCCCTCAGTGAGATAAATTAGATTTGGCATCTCCTGTCCTGGGCCAGGGATC
1441 TCTCTACAAGAGCCCCTGCCCCTCTGTTGGAGGCACAGTTTTAGAATAAGGAGGAGGAGGGAGAAGAGAAAATGTAAAGG
1521 AGGGAGATCTTTCCCAGGCCGCACCATTTCTGTCACTCACATGGACCCAAGATAAAAGAATGGCCAAACCCTCACAACCC
1601 CTGATGTTTGAAGAGTTCCAAGTTGAAGGGAAACAAAGAAGTGTTTGATGGTGCCAGAGAGGGGCTGCTCTCCAGAAAGC
1681 TAAAATTTAATTTCTTTTTTCCTCTGAGTTCTGTACTTCAACCAGCCTACAAGCTGGCACTTGCTAACAAATCAGAAATA
1761 TGACAATTAATGATTAAAGACTGTGATTGCCACCAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' tgTCGCCCAGGCTGGAGTGCAGt 3'
789 - 811 153.00 -19.70
2
miRNA  3' ucGGUCGGU-UGAGUGUCACGUCu 5'
            :|| ||| ||| : | ||||| 
Target 5' tgTCACCCAGACT-GGAATGCAGt 3'
1093 - 1115 128.00 -15.00
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :| |||  | || ||||| | 
Target 5' ccTCTGCC-TCCCAAAGTGCTGg 3'
1001 - 1022 124.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30519120 2 COSMIC
COSN31612429 9 COSMIC
COSN30155083 49 COSMIC
COSN5736884 56 COSMIC
COSN30184768 58 COSMIC
COSN26989014 59 COSMIC
COSN30459163 63 COSMIC
COSN30523602 69 COSMIC
COSN4892421 70 COSMIC
COSN30448403 74 COSMIC
COSN30485332 74 COSMIC
COSN26552252 85 COSMIC
COSN30461674 89 COSMIC
COSN30139933 103 COSMIC
COSN7199570 329 COSMIC
COSN24775085 533 COSMIC
COSN24790586 772 COSMIC
COSN22394743 911 COSMIC
COSN32037121 1023 COSMIC
COSN26134847 1049 COSMIC
COSN15710809 1052 COSMIC
COSN29182741 1094 COSMIC
COSN31480540 1351 COSMIC
COSN2473597 1400 COSMIC
COSN31522403 1427 COSMIC
COSN31589242 1435 COSMIC
COSN29815430 1471 COSMIC
COSN31566773 1615 COSMIC
COSN31518379 1617 COSMIC
COSN31578932 1703 COSMIC
COSN28201404 1719 COSMIC
COSN31565104 1779 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs372104345 2 dbSNP
rs559417211 3 dbSNP
rs1375453674 4 dbSNP
rs1197526743 6 dbSNP
rs546077377 8 dbSNP
rs762749747 9 dbSNP
rs1207286632 10 dbSNP
rs1488562521 11 dbSNP
rs1464736999 12 dbSNP
rs368768985 13 dbSNP
rs765519636 20 dbSNP
rs759891662 22 dbSNP
rs1274385794 23 dbSNP
rs777029820 26 dbSNP
rs769990159 27 dbSNP
rs1262459778 29 dbSNP
rs747485788 30 dbSNP
rs374758861 33 dbSNP
rs772127541 34 dbSNP
rs1320927551 35 dbSNP
rs1402430225 39 dbSNP
rs1399938554 51 dbSNP
rs963305732 54 dbSNP
rs113914118 61 dbSNP
rs1304783504 69 dbSNP
rs563344322 70 dbSNP
rs1007993021 75 dbSNP
rs1272226236 79 dbSNP
rs187851096 83 dbSNP
rs1340519184 85 dbSNP
rs1016118730 87 dbSNP
rs1272195774 91 dbSNP
rs1386483343 102 dbSNP
rs1322819749 110 dbSNP
rs1457904961 122 dbSNP
rs1004684013 125 dbSNP
rs1446282962 129 dbSNP
rs951103660 134 dbSNP
rs1025270047 135 dbSNP
rs995131111 138 dbSNP
rs899458685 141 dbSNP
rs1037944771 145 dbSNP
rs1379337515 157 dbSNP
rs1002809880 159 dbSNP
rs182628626 161 dbSNP
rs1245597304 164 dbSNP
rs192366290 165 dbSNP
rs1465116780 167 dbSNP
rs1277456073 176 dbSNP
rs1341479295 180 dbSNP
rs1000853790 184 dbSNP
rs1292279423 195 dbSNP
rs1332311063 199 dbSNP
rs904133057 201 dbSNP
rs1265453533 203 dbSNP
rs1347528041 209 dbSNP
rs1042635371 216 dbSNP
rs781452987 229 dbSNP
rs945547414 236 dbSNP
rs1363119366 241 dbSNP
rs1299997603 250 dbSNP
rs534931322 251 dbSNP
rs1476272023 263 dbSNP
rs1165767586 264 dbSNP
rs892548914 271 dbSNP
rs1052468134 272 dbSNP
rs1051530554 275 dbSNP
rs936640760 282 dbSNP
rs1414545751 288 dbSNP
rs1332395932 289 dbSNP
rs373146712 297 dbSNP
rs975375649 299 dbSNP
rs762221305 307 dbSNP
rs1313022985 313 dbSNP
rs974838947 314 dbSNP
rs56109601 322 dbSNP
rs539352552 324 dbSNP
rs987001851 327 dbSNP
rs148867349 329 dbSNP
rs1388237410 330 dbSNP
rs565567203 336 dbSNP
rs973739137 337 dbSNP
rs1449514592 342 dbSNP
rs778718445 348 dbSNP
rs1182628156 350 dbSNP
rs1250131177 350 dbSNP
rs950559331 355 dbSNP
rs1184155600 358 dbSNP
rs1381006760 361 dbSNP
rs376561316 366 dbSNP
rs1434581805 367 dbSNP
rs1025261618 371 dbSNP
rs1013417083 380 dbSNP
rs1466908606 384 dbSNP
rs959743425 386 dbSNP
rs1236568694 387 dbSNP
rs1310729758 388 dbSNP
rs962337259 398 dbSNP
rs1233417123 399 dbSNP
rs1034400632 401 dbSNP
rs1002466829 402 dbSNP
rs905404405 403 dbSNP
rs1257218061 410 dbSNP
rs1204882189 413 dbSNP
rs1340736258 422 dbSNP
rs1239819813 446 dbSNP
rs1197786040 464 dbSNP
rs1238815839 465 dbSNP
rs1277368586 466 dbSNP
rs1229275887 468 dbSNP
rs1192271266 473 dbSNP
rs1397480752 474 dbSNP
rs188231104 488 dbSNP
rs145569289 489 dbSNP
rs1170272671 502 dbSNP
rs1009788513 509 dbSNP
rs1282662835 514 dbSNP
rs1025180580 535 dbSNP
rs1460101048 536 dbSNP
rs891372213 540 dbSNP
rs1400347271 552 dbSNP
rs1013750799 556 dbSNP
rs115317816 557 dbSNP
rs1052499356 564 dbSNP
rs936714304 578 dbSNP
rs1220650712 582 dbSNP
rs373282533 590 dbSNP
rs1468070187 591 dbSNP
rs1211967291 593 dbSNP
rs908846800 594 dbSNP
rs1368678397 602 dbSNP
rs1040077411 608 dbSNP
rs1170370279 612 dbSNP
rs1430700427 622 dbSNP
rs565859332 631 dbSNP
rs1442115927 634 dbSNP
rs1423961701 636 dbSNP
rs912468893 637 dbSNP
rs1323225015 638 dbSNP
rs929263891 640 dbSNP
rs143433455 644 dbSNP
rs532293918 652 dbSNP
rs563206872 656 dbSNP
rs763116980 658 dbSNP
rs760159275 662 dbSNP
rs1231693102 668 dbSNP
rs1482258256 673 dbSNP
rs1254634328 684 dbSNP
rs1206435381 685 dbSNP
rs543961969 688 dbSNP
rs543442483 727 dbSNP
rs1240910986 729 dbSNP
rs1489464795 734 dbSNP
rs1451121441 735 dbSNP
rs1034199350 739 dbSNP
rs183217799 740 dbSNP
rs1230091419 748 dbSNP
rs1357386062 754 dbSNP
rs1034020884 759 dbSNP
rs1287931312 760 dbSNP
rs1415277389 765 dbSNP
rs574820369 765 dbSNP
rs968049569 765 dbSNP
rs76368140 771 dbSNP
rs1298513697 772 dbSNP
rs1354596211 772 dbSNP
rs879130925 772 dbSNP
rs1309793751 776 dbSNP
rs1286210158 777 dbSNP
rs1379952164 781 dbSNP
rs190552746 784 dbSNP
rs969698897 787 dbSNP
rs1282756441 792 dbSNP
rs1349220855 793 dbSNP
rs1321075090 796 dbSNP
rs541503329 799 dbSNP
rs1025632675 811 dbSNP
rs139970317 813 dbSNP
rs547257714 814 dbSNP
rs1157905624 815 dbSNP
rs1471827716 818 dbSNP
rs1031147953 822 dbSNP
rs1472832166 828 dbSNP
rs1000960468 829 dbSNP
rs372020105 831 dbSNP
rs903898414 839 dbSNP
rs539760934 840 dbSNP
rs535300333 843 dbSNP
rs1374581585 849 dbSNP
rs1432679320 855 dbSNP
rs1336381126 856 dbSNP
rs1360028566 861 dbSNP
rs1245464689 870 dbSNP
rs1441563670 876 dbSNP
rs891074382 880 dbSNP
rs1379236053 891 dbSNP
rs545593049 896 dbSNP
rs576826674 899 dbSNP
rs1346141650 900 dbSNP
rs929872663 907 dbSNP
rs556881401 910 dbSNP
rs537073497 911 dbSNP
rs1206999902 912 dbSNP
rs568045597 913 dbSNP
rs186229295 915 dbSNP
rs979819156 916 dbSNP
rs1224114795 917 dbSNP
rs971450022 920 dbSNP
rs916893144 934 dbSNP
rs1366881418 936 dbSNP
rs992422339 944 dbSNP
rs1272967241 946 dbSNP
rs1327134994 949 dbSNP
rs1402505976 954 dbSNP
rs1438022402 955 dbSNP
rs1371031242 972 dbSNP
rs746015817 974 dbSNP
rs1031180457 975 dbSNP
rs951822427 984 dbSNP
rs1390376042 989 dbSNP
rs1026040746 993 dbSNP
rs968196814 995 dbSNP
rs1018762880 996 dbSNP
rs1414232845 999 dbSNP
rs1423723507 1001 dbSNP
rs1339165718 1002 dbSNP
rs1193379238 1005 dbSNP
rs1454777483 1013 dbSNP
rs777755126 1019 dbSNP
rs1186755388 1027 dbSNP
rs1466466287 1028 dbSNP
rs867069262 1032 dbSNP
rs1198794424 1035 dbSNP
rs1252296158 1037 dbSNP
rs1449733473 1040 dbSNP
rs1200937277 1042 dbSNP
rs1377945159 1043 dbSNP
rs1261505521 1044 dbSNP
rs1426118105 1045 dbSNP
rs1466203352 1048 dbSNP
rs1051018479 1049 dbSNP
rs1388683733 1050 dbSNP
rs1311348254 1052 dbSNP
rs1388983571 1054 dbSNP
rs994046476 1059 dbSNP
rs897074525 1061 dbSNP
rs534718314 1062 dbSNP
rs979252709 1062 dbSNP
rs374634554 1066 dbSNP
rs1429126582 1070 dbSNP
rs1276443819 1076 dbSNP
rs1319645106 1078 dbSNP
rs1220818917 1081 dbSNP
rs1271930565 1084 dbSNP
rs1038200646 1087 dbSNP
rs941177853 1090 dbSNP
rs968166324 1096 dbSNP
rs369912309 1097 dbSNP
rs565609658 1098 dbSNP
rs767160464 1099 dbSNP
rs550765706 1107 dbSNP
rs1265063889 1112 dbSNP
rs1478237088 1115 dbSNP
rs1164510432 1117 dbSNP
rs576831837 1119 dbSNP
rs1366755237 1120 dbSNP
rs12040011 1122 dbSNP
rs1442467357 1126 dbSNP
rs1366967613 1147 dbSNP
rs1289046381 1151 dbSNP
rs1300368003 1158 dbSNP
rs1341540602 1178 dbSNP
rs1292336604 1184 dbSNP
rs949800143 1188 dbSNP
rs1246418114 1200 dbSNP
rs1265955871 1207 dbSNP
rs966109341 1210 dbSNP
rs1349783261 1214 dbSNP
rs1214376362 1220 dbSNP
rs1357731410 1223 dbSNP
rs1178880259 1224 dbSNP
rs1030328192 1225 dbSNP
rs1287830848 1225 dbSNP
rs1435963180 1226 dbSNP
rs1187458506 1227 dbSNP
rs1390091074 1229 dbSNP
rs997072145 1246 dbSNP
rs1161003021 1249 dbSNP
rs1188422421 1249 dbSNP
rs1237820958 1249 dbSNP
rs1331557304 1249 dbSNP
rs1361533963 1249 dbSNP
rs1363308278 1249 dbSNP
rs1397422189 1249 dbSNP
rs1399699196 1249 dbSNP
rs1434536020 1249 dbSNP
rs1438323316 1249 dbSNP
rs34687571 1249 dbSNP
rs879209242 1249 dbSNP
rs1354122675 1250 dbSNP
rs900074736 1250 dbSNP
rs1254484505 1251 dbSNP
rs1484323578 1251 dbSNP
rs1201262977 1252 dbSNP
rs1249850588 1253 dbSNP
rs1451372080 1255 dbSNP
rs1181025367 1258 dbSNP
rs916928850 1264 dbSNP
rs988438125 1265 dbSNP
rs1379743798 1266 dbSNP
rs1467217561 1272 dbSNP
rs1303098683 1273 dbSNP
rs956984030 1275 dbSNP
rs1017095404 1276 dbSNP
rs1181446709 1281 dbSNP
rs1482812847 1283 dbSNP
rs1377647924 1287 dbSNP
rs924184516 1288 dbSNP
rs532160336 1299 dbSNP
rs1212748227 1304 dbSNP
rs1005656274 1312 dbSNP
rs979653958 1313 dbSNP
rs1257716551 1314 dbSNP
rs569639802 1330 dbSNP
rs1348573721 1331 dbSNP
rs1273790332 1332 dbSNP
rs1225589670 1336 dbSNP
rs968604170 1337 dbSNP
rs183087578 1339 dbSNP
rs774721520 1344 dbSNP
rs1190003970 1347 dbSNP
rs112489249 1353 dbSNP
rs955444473 1369 dbSNP
rs13190 1370 dbSNP
rs17017942 1373 dbSNP
rs897107124 1374 dbSNP
rs776109108 1376 dbSNP
rs926525317 1385 dbSNP
rs1435616642 1390 dbSNP
rs190918054 1406 dbSNP
rs13375438 1409 dbSNP
rs946520292 1409 dbSNP
rs905704046 1411 dbSNP
rs1387189219 1435 dbSNP
rs1044203053 1440 dbSNP
rs565202769 1441 dbSNP
rs1220708844 1448 dbSNP
rs895566238 1457 dbSNP
rs1321227769 1458 dbSNP
rs955563032 1458 dbSNP
rs187188309 1468 dbSNP
rs770041530 1472 dbSNP
rs867257378 1476 dbSNP
rs1164349237 1478 dbSNP
rs1422352463 1481 dbSNP
rs1476604966 1482 dbSNP
rs1195432732 1487 dbSNP
rs1423676621 1489 dbSNP
rs922660124 1490 dbSNP
rs1162578037 1504 dbSNP
rs924215677 1506 dbSNP
rs754841608 1519 dbSNP
rs576688526 1522 dbSNP
rs964347775 1523 dbSNP
rs1297290480 1538 dbSNP
rs1017126680 1540 dbSNP
rs375343674 1541 dbSNP
rs946962037 1546 dbSNP
rs1251021205 1552 dbSNP
rs1202867099 1554 dbSNP
rs1378503437 1561 dbSNP
rs1226738867 1562 dbSNP
rs543335077 1566 dbSNP
rs911389361 1567 dbSNP
rs1322779718 1569 dbSNP
rs1026022891 1573 dbSNP
rs985642499 1575 dbSNP
rs993227521 1581 dbSNP
rs1489495959 1583 dbSNP
rs955487226 1589 dbSNP
rs1029686951 1595 dbSNP
rs896217989 1598 dbSNP
rs574211408 1600 dbSNP
rs1472173503 1605 dbSNP
rs1179539227 1606 dbSNP
rs972729362 1617 dbSNP
rs1424273608 1622 dbSNP
rs745893341 1628 dbSNP
rs1158002984 1629 dbSNP
rs143980739 1630 dbSNP
rs534286937 1633 dbSNP
rs1005889548 1635 dbSNP
rs1064983 1638 dbSNP
rs1358871500 1640 dbSNP
rs1350197444 1650 dbSNP
rs528468420 1653 dbSNP
rs1380013390 1654 dbSNP
rs11283 1655 dbSNP
rs1307771355 1663 dbSNP
rs1397829967 1664 dbSNP
rs895597216 1668 dbSNP
rs1241408338 1696 dbSNP
rs558207863 1699 dbSNP
rs934128667 1700 dbSNP
rs1351869957 1703 dbSNP
rs1207610451 1704 dbSNP
rs1052839997 1716 dbSNP
rs1461409584 1722 dbSNP
rs1177908822 1724 dbSNP
rs975467110 1728 dbSNP
rs963983607 1734 dbSNP
rs910153738 1736 dbSNP
rs747906721 1738 dbSNP
rs934377180 1740 dbSNP
rs372039229 1772 dbSNP
rs1042697127 1791 dbSNP
rs1412938528 1797 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5284.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguugAGUGUCACGUCu 5'
                     || || ||: | 
Target 5' -----------UCUCACUGUCGc 3'
1 - 12
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000356495.4 | 3UTR | UCUCACUGUCGCCCAGGCUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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