pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAGI3   
Synonyms MAGI-3, dJ730K3.2
Description membrane associated guanylate kinase, WW and PDZ domain containing 3
Transcript NM_152900   
Other Transcripts NM_001142782   
Expression
Putative miRNA Targets on MAGI3
3'UTR of MAGI3
(miRNA target sites are highlighted)
>MAGI3|NM_152900|3'UTR
   1 GGCTTTCAGGGCTTTTCTTGGTCTTTCCTTAAAAAGACTTGGTAAATTTGCATGTCTTGTAAATCACTTTCTTCTTTTGT
  81 TTTCTTTTAAATTAAAAATGATGCTATTAAATACATCTATTTCTATCTTCTGCACTTTTCAGTCTTCTTTTGACATTAAA
 161 TTTGACAGCTTAATGCAAGAGAATTATTACAAATGCCCATGAGCCTCATTCTGGTTACCACAGTTTGGTTTCCTTTATTA
 241 ATTAGTGATTTTGCCATATCCTAAACTGTATCAATTCATAATAATTAGTGAGCTTCTTGGGCCACGTAATTTGGTTCAGC
 321 TTTATAACTTGTAAGTTCTAATTGGGCTTTACTAATAGAGAATTTACAGATCATATATTATCTCACTAATTATATGTAAT
 401 TGGAAAAAATGAATATTATTTTGTGTATATAAACAACCCATCCTTCATGTATGAACAGATGTCTGTACACATCCGCCTTT
 481 ATAGAGAGATATGTTGTAAACATATACAAACTGTATAAAATACTCAGGCTTTTTAAGCAGTTACGACAATTCAAATGGCT
 561 GTCAAAGTTCAAAACGTATTGTTCCTATTTGTAATTCTAAAATTTAATAATGTTCCATTCAAATCACTTTTTTAGGTGAT
 641 TGGGATATTAATAATCCTTCGTCTTCAAATGTGATTTATGATGAACAGTCACCATTACCCCCATCTTCACATTTTGCTTC
 721 CATATTTGAAGAGTCTCACGTGCCAGTAATTGAAGAATCTTTGAGAGTTCAGATATGTGAAAAGGCAGAAGAATTAAAGG
 801 ACATTGTGCCTGAAAAGAAAAGCACTTTAAATGAAAATCAGCCTGAGATAAAGCATCAGTCTCTTCTCCAGAAAAATGTG
 881 AGTAAGAGGGATCCACCCAGCAGTCATGGGCACAGTAACAAGAAAAATCTATTAAAAGTAGAAAATGGTGTTACACGAAG
 961 AGGTAGATCGGTTAGTCCCAAAAAGCCAGCCAGTCAACATTCAGAGGAACATTTGGATAAGATTCCTAGTCCTCTAAAAA
1041 ATAACCCCAAAAGAAGACCCAGAGATCAATCCCTCAGCCCCAGCAAAGGGGAAAATAAAAGTTGTCAGGTCAGCACCAGG
1121 GCAGGCTCTGGACAAGATCAGTGCAGAAAAAGCAGAGGTCGGTCGGCCAGCCCAAAAAAGCAGCAAAAAATTGAAGGAAG
1201 CAAAGCTCCATCAAATGCTGAGGCCAAATTATTAGAGGGTAAGAGTCGAAGAATAGCAGGCTATACGGGCAGTAATGCTG
1281 AGCAGATCCCAGATGGGAAGGAAAAATCAGACGTCATCAGGAAAGATGCAAAGCAGAATCAGTTGGAAAAAAGCAGAACA
1361 AGGTCTCCAGAGAAAAAAATCAAAAGAATGGTTGAGAAATCTCTTCCATCCAAAATGACTAATAAGACTACAAGTAAAGA
1441 AGTATCTGAAAATGAAAAAGGAAAGAAAGTAACCACAGGAGAAACAAGTTCTAGTAACGATAAAATAGGAGAAAATGTCC
1521 AGCTATCAGAAAAGAGGCTGAAGCAAGAACCTGAAGAGAAGGTAGTTTCAAACAAAACAGAAGATCACAAAGGGAAAGAA
1601 CTAGAGGCAGCTGACAAAAACAAAGAGACTGGAAGGTTCAAACCGGAAAGCAGTTCTCCAGTTAAGAAAACACTGATAAC
1681 TCCAGGGCCCTGGAAGGTTCCAAGTGGAAATAAAGTCACAGGCACTATTGGTATGGCTGAGAAACGGCAGTAACCTTTAG
1761 TATAAAACAAAGAAAAACAAGTTGTAATCTTTTCTTACAGCAGCATTTTTCCAGAAAAAGCCTTTTTTTTTTTTTCAGAT
1841 ATTCTGAAACAGATAAGTACATGTTAATGTGAGCCTCAAGTTACCTAGGCTGCATGAAGGGCCTTTAGGATTGCTAAGAA
1921 CCAACTGTCCCCCTGGCCGGCTGCCCTCCCTCGCTCTCAGGAAGGAGCTGCATCCACATGCTCATCTGACCCGCCCTGCT
2001 CAGGCTGCCCAGCTCGTCTTCATGAGTGTCTGAACAAATGACATATGTTGATATTAACAATGTGGTCACAACTCACTTTG
2081 TATTTGTGCCAAGTTATCTACTGTATCATGTCTGTTTTTATCCTTTTTGTTCAGCTGTTTCCACAGTAATGAAAAAGTTA
2161 GGTTTGGCTTGGAAGTTGATGATCTCAATAGCATGTTGCATGTTTACAGAGAGAAATATGTGAGTCCTTGCAGAAGAAGA
2241 GACTGTTAACTCATCGTTAAAGATGGCCGTTGTCTCTTCTAACAGCTACTGATGATGTCCCACTTTAAAAATAAAACCCC
2321 CAAACATCACTACTTTAAGGAAAAAAAAAATGTAGTCCAATATTGATGCTTTCTTATGGCTTTTTATTTTAATTTGGCTG
2401 GATAAGTTGTTTCAAATAACTGTTAAAGATATTACTTACAATTGAATGTTTGAAATAAGAAAGTACTTTAAGCAATAGAG
2481 TTCATCTCCTGCTGTGTTATCCAACCTCGATGTATACTTACAGCATCTCAGGTCACCCTTTTTATTTCAGTTATTTAATT
2561 ATGAAACCATAAAGAAGCATGTGGAAATAGTGTTTATTGCTCTTTGAAGAAAAACCACCAACTATTTCTGGATATTTTGG
2641 CTGTACCTACTACTAAAGTCATTAGTCTTTAATACATAATACATATTTGAAAAGTAAACATATTATATAGATTATGTGAG
2721 GGACTTAATCATGAAACCAGTTTCACAGTCCAAGTACCAACTCTTCTGGTAGCAGGTGCACAAGCTTGGGTGTTTAAAAA
2801 CAACCTGTGTAGGGTATGCCCAGCAAATGAGGACAAATGTGTAGACAGTACTTACTGGATCTTATTTAACTTTTAGCTAC
2881 ATTAACTAACTTTCTTATTTAAAAACAAGAAAGGGAGACTAAACATCTGCTTAACTTGTACACATTTTCAGAATTCTTTT
2961 TAAAAGTCTAGTTAAAGATGTTTCTTAGAAGTTGGAGACTGTTAACAACTTCCATAAAATAGATCCAGGTTTTTCAGTTC
3041 CCTGAAGCAGCATTCAGTAGCATCTATATAAATAAAGGCACCTTCTGAGAATAAAACTATTTTATGGAGTGTGTGAACAC
3121 ACTTGTTCTGTCACCTGGGTTCATCTTGTTGTGAAGCACATTAGGTCCAGGTCCTTCCCTCTGGGAGTCTGACTGTGAAA
3201 CTCTTTAACCCAACAACTCAATTAGCCCCTGTAGATAAGACATGCTTCCCAGAGTGAGATTTTTGAAATCCCCTTTTCAT
3281 CCAGAACTATATTTACCCACCTATTGTAACTATTCAAATAGAGCAAAATTAGGAGGCTTGATAAATACTAAGAATTTAGT
3361 ACCACAGAAATTATTTATTATTTTCCCTGTAGTCCACAATTAGTGATAACGAATCCTATTTTTGTTAACTGTGACATAAC
3441 TTTGATGTCATATGTTGTCCTATGTGGTTCTTCCTAAGTAAACTCTGTACTGATTATATACTGACTTAGCAATGTGGCCT
3521 TGGAATGCTGAGCAAAATGTGGATGTACTGGTTGTAAATGTTTATATATTGTACAGTACCTTTATATATACACTTGAGGT
3601 TCTGATTAGAGAAAGATCTGTAAATTGCTCATTATTTTTTATATAGATATTTAAAAAAAACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            |::| |||  : |||||||| 
Target 5' ctCTGGACAAGAT-CAGTGCAGa 3'
1126 - 1147 156.00 -18.40
2
miRNA  3' ucggUCGGUU-GAGUGUCACGUcu 5'
              | |||: :||||||| ||  
Target 5' atgaAACCAGTTTCACAGTCCAag 3'
2731 - 2754 119.00 -17.50
3
miRNA  3' ucGGUC--GGUUGAG--------UG-UCACGUcu 5'
            | ||  |||||||        :| :|||||  
Target 5' tcCAAGTACCAACTCTTCTGGTAGCAGGTGCAca 3'
2749 - 2782 117.00 -18.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
788942 1271 ClinVar
COSN30501422 22 COSMIC
COSN31585957 24 COSMIC
COSN30457416 42 COSMIC
COSN30522915 42 COSMIC
COSN30500973 58 COSMIC
COSN31605008 75 COSMIC
COSN30456617 90 COSMIC
COSN5999163 112 COSMIC
COSN23181966 113 COSMIC
COSN30185798 125 COSMIC
COSN30143915 156 COSMIC
COSN1401965 263 COSMIC
COSN30560161 577 COSMIC
COSN28613634 613 COSMIC
COSM8502725 634 COSMIC
COSM6886546 637 COSMIC
COSM7942034 643 COSMIC
COSM3471462 646 COSMIC
COSM894039 662 COSMIC
COSM8660369 664 COSMIC
COSM8984382 689 COSMIC
COSM7713588 694 COSMIC
COSM5716901 706 COSMIC
COSM5765144 707 COSMIC
COSM9818602 715 COSMIC
COSM9917701 718 COSMIC
COSM7376081 729 COSMIC
COSM8887777 740 COSMIC
COSM1662677 741 COSMIC
COSM5667291 745 COSMIC
COSM9625927 753 COSMIC
COSM3965709 758 COSMIC
COSM9818603 758 COSMIC
COSM344791 764 COSMIC
COSM9818604 765 COSMIC
COSM7401654 789 COSMIC
COSM9818605 805 COSMIC
COSM8196104 810 COSMIC
COSM9818606 811 COSMIC
COSM423487 816 COSMIC
COSM1332803 817 COSMIC
COSM9625930 818 COSMIC
COSM4700019 819 COSMIC
COSM8779632 823 COSMIC
COSM9818607 835 COSMIC
COSM9818608 838 COSMIC
COSM8875888 844 COSMIC
COSM7737570 846 COSMIC
COSM8411759 875 COSMIC
COSM2120275 877 COSMIC
COSM9140050 877 COSMIC
COSM5988035 883 COSMIC
COSM7488808 883 COSMIC
COSM380764 887 COSMIC
COSM7598256 930 COSMIC
COSM1600574 935 COSMIC
COSM5843099 942 COSMIC
COSM7401655 961 COSMIC
COSM6905306 970 COSMIC
COSM4020778 971 COSMIC
COSM6706336 991 COSMIC
COSM894040 995 COSMIC
COSM7639122 996 COSMIC
COSM9546783 1005 COSMIC
COSM3801318 1023 COSMIC
COSM7510875 1035 COSMIC
COSM5132006 1042 COSMIC
COSM894041 1067 COSMIC
COSM6584095 1068 COSMIC
COSM6540749 1112 COSMIC
COSM9039223 1120 COSMIC
COSM4576130 1140 COSMIC
COSM8805194 1143 COSMIC
COSM5904113 1161 COSMIC
COSM5730478 1162 COSMIC
COSM5978063 1180 COSMIC
COSM8496901 1180 COSMIC
COSM9854469 1190 COSMIC
COSM5505689 1192 COSMIC
COSM9207101 1213 COSMIC
COSM3788449 1221 COSMIC
COSM9370968 1223 COSMIC
COSM4020779 1227 COSMIC
COSM9625928 1236 COSMIC
COSM6706347 1242 COSMIC
COSM3375605 1247 COSMIC
COSM423488 1249 COSMIC
COSM4878503 1267 COSMIC
COSM3788450 1281 COSMIC
COSM9144548 1284 COSMIC
COSM9676586 1297 COSMIC
COSM9776925 1302 COSMIC
COSM8942125 1314 COSMIC
COSM9625939 1315 COSMIC
COSM6006590 1329 COSMIC
COSM5754136 1347 COSMIC
COSM1332805 1380 COSMIC
COSM3788451 1382 COSMIC
COSM8943487 1397 COSMIC
COSM5669424 1425 COSMIC
COSM7709695 1440 COSMIC
COSM9625929 1449 COSMIC
COSM6120513 1492 COSMIC
COSM8875884 1503 COSMIC
COSM3716756 1521 COSMIC
COSM9691009 1530 COSMIC
COSM9236191 1555 COSMIC
COSM3934016 1557 COSMIC
COSM9020691 1573 COSMIC
COSM5015889 1583 COSMIC
COSM7941246 1594 COSMIC
COSM894042 1599 COSMIC
COSM3930276 1605 COSMIC
COSM9296022 1614 COSMIC
COSM6883681 1626 COSMIC
COSM8340621 1626 COSMIC
COSM2120286 1635 COSMIC
COSM321557 1645 COSMIC
COSM1286063 1646 COSMIC
COSM3417877 1657 COSMIC
COSM9625931 1676 COSMIC
COSM894043 1681 COSMIC
COSM5475484 1703 COSMIC
COSM9750249 1708 COSMIC
COSN228551 1717 COSMIC
COSM8238688 1740 COSMIC
COSM9234545 1746 COSMIC
COSN19196029 1784 COSMIC
COSN1087284 1836 COSMIC
COSN28932780 1836 COSMIC
COSN1087285 2070 COSMIC
COSN5353127 2191 COSMIC
COSN5353128 2216 COSMIC
COSN20095175 2351 COSMIC
COSN23445781 2449 COSMIC
COSN31778142 2521 COSMIC
COSN27226571 2540 COSMIC
COSN8887572 2773 COSMIC
COSN21878875 2808 COSMIC
COSN5730786 3047 COSMIC
COSN1401966 3074 COSMIC
COSN23987314 3318 COSMIC
COSN19554737 3381 COSMIC
COSN5730787 3486 COSMIC
COSN8964243 3610 COSMIC
COSN22795650 3661 COSMIC
rs61742849 1261 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs571200436 4 dbSNP
rs1410895891 8 dbSNP
rs373954075 8 dbSNP
rs900713715 9 dbSNP
rs779995001 10 dbSNP
rs376886717 13 dbSNP
rs1361701611 14 dbSNP
rs754984154 27 dbSNP
rs1382907927 31 dbSNP
rs199945950 37 dbSNP
rs372451874 39 dbSNP
rs1340138599 49 dbSNP
rs758661168 52 dbSNP
rs1405063445 57 dbSNP
rs996731608 57 dbSNP
rs373314347 60 dbSNP
rs1480224421 68 dbSNP
rs954928590 72 dbSNP
rs1297715657 73 dbSNP
rs1004901974 75 dbSNP
rs1341181530 75 dbSNP
rs965763542 78 dbSNP
rs1402120163 80 dbSNP
rs1299405903 82 dbSNP
rs1240874924 83 dbSNP
rs1356145256 100 dbSNP
rs1014837272 110 dbSNP
rs1232176164 116 dbSNP
rs1223428274 127 dbSNP
rs963270385 143 dbSNP
rs1276953374 146 dbSNP
rs1256365571 148 dbSNP
rs1434976633 156 dbSNP
rs973327996 157 dbSNP
rs780469487 158 dbSNP
rs1419839996 162 dbSNP
rs1034226270 169 dbSNP
rs1156542477 174 dbSNP
rs1418125538 180 dbSNP
rs774933851 191 dbSNP
rs921684351 197 dbSNP
rs1425634680 200 dbSNP
rs186626153 209 dbSNP
rs1214318354 222 dbSNP
rs1284724879 233 dbSNP
rs1488303574 237 dbSNP
rs1049222707 241 dbSNP
rs1268026044 246 dbSNP
rs908105741 255 dbSNP
rs1217236524 256 dbSNP
rs1195407651 260 dbSNP
rs1264740862 264 dbSNP
rs1215399230 267 dbSNP
rs1312945803 270 dbSNP
rs940956206 274 dbSNP
rs573811242 288 dbSNP
rs1045930649 300 dbSNP
rs1200090670 305 dbSNP
rs542321125 306 dbSNP
rs867826693 307 dbSNP
rs1253535941 311 dbSNP
rs1158535201 316 dbSNP
rs113848260 329 dbSNP
rs1361278095 343 dbSNP
rs1452643866 357 dbSNP
rs1421530056 359 dbSNP
rs1359306217 370 dbSNP
rs1055857897 376 dbSNP
rs917025434 380 dbSNP
rs191420910 389 dbSNP
rs945748952 391 dbSNP
rs977093693 414 dbSNP
rs1237898130 422 dbSNP
rs4838997 424 dbSNP
rs935653348 426 dbSNP
rs1353800078 430 dbSNP
rs1217392444 432 dbSNP
rs1011556101 437 dbSNP
rs568286276 439 dbSNP
rs1323323509 466 dbSNP
rs1263149409 473 dbSNP
rs1259082807 474 dbSNP
rs185569308 475 dbSNP
rs1292823667 476 dbSNP
rs902429388 476 dbSNP
rs564921726 478 dbSNP
rs1381102852 479 dbSNP
rs1379251384 480 dbSNP
rs1338376655 489 dbSNP
rs1269959523 502 dbSNP
rs769021002 503 dbSNP
rs1054066545 506 dbSNP
rs1171066323 508 dbSNP
rs1467151545 527 dbSNP
rs1178584488 540 dbSNP
rs1371202426 543 dbSNP
rs1381402729 545 dbSNP
rs533646100 546 dbSNP
rs190444125 554 dbSNP
rs932183585 555 dbSNP
rs1461000524 561 dbSNP
rs1239201532 562 dbSNP
rs74791874 563 dbSNP
rs1200836944 564 dbSNP
rs563838702 567 dbSNP
rs1479949477 569 dbSNP
rs974561376 576 dbSNP
rs748679133 577 dbSNP
rs1246163306 582 dbSNP
rs748014069 592 dbSNP
rs529515064 593 dbSNP
rs1351961157 601 dbSNP
rs772333757 611 dbSNP
rs1316511922 612 dbSNP
rs12564503 613 dbSNP
rs746474868 619 dbSNP
rs770368099 620 dbSNP
rs1262125595 623 dbSNP
rs770274398 631 dbSNP
rs1393345764 636 dbSNP
rs776249111 637 dbSNP
rs763333517 641 dbSNP
rs1472202982 642 dbSNP
rs1297579780 643 dbSNP
rs764723747 645 dbSNP
rs774645163 648 dbSNP
rs762172768 660 dbSNP
rs940342425 661 dbSNP
rs767690442 662 dbSNP
rs750667685 676 dbSNP
rs865998178 681 dbSNP
rs376397111 688 dbSNP
rs772680723 691 dbSNP
rs754016934 693 dbSNP
rs1299178971 694 dbSNP
rs754857368 698 dbSNP
rs779007633 699 dbSNP
rs370836416 700 dbSNP
rs758296108 705 dbSNP
rs777516623 709 dbSNP
rs746634291 713 dbSNP
rs1201937034 718 dbSNP
rs770653114 720 dbSNP
rs1441436370 728 dbSNP
rs937471325 729 dbSNP
rs776036309 730 dbSNP
rs193029202 732 dbSNP
rs745400977 738 dbSNP
rs1381086911 739 dbSNP
rs768980454 740 dbSNP
rs373598839 741 dbSNP
rs1250225566 745 dbSNP
rs1466909631 750 dbSNP
rs202113522 752 dbSNP
rs538666966 753 dbSNP
rs760803569 761 dbSNP
rs866137266 762 dbSNP
rs761136998 766 dbSNP
rs766680088 768 dbSNP
rs958841816 777 dbSNP
rs1489727853 789 dbSNP
rs1293358430 795 dbSNP
rs753801906 804 dbSNP
rs1309608737 807 dbSNP
rs1240703762 809 dbSNP
rs61751950 810 dbSNP
rs1308502711 812 dbSNP
rs765225020 813 dbSNP
rs1235175411 823 dbSNP
rs528619956 826 dbSNP
rs1343863306 827 dbSNP
rs758457681 833 dbSNP
rs777676148 836 dbSNP
rs751435074 839 dbSNP
rs372779823 840 dbSNP
rs977208257 842 dbSNP
rs756806690 848 dbSNP
rs1238132459 850 dbSNP
rs1434210063 857 dbSNP
rs551356730 860 dbSNP
rs1376214039 877 dbSNP
rs764471393 878 dbSNP
rs1041714868 879 dbSNP
rs780905862 880 dbSNP
rs867186942 883 dbSNP
rs776890850 884 dbSNP
rs903151705 884 dbSNP
rs1330709327 886 dbSNP
rs1391383726 889 dbSNP
rs745332927 895 dbSNP
rs769318925 897 dbSNP
rs1490054729 899 dbSNP
rs922225182 909 dbSNP
rs779590605 910 dbSNP
rs571333192 914 dbSNP
rs1348050469 917 dbSNP
rs1259929623 920 dbSNP
rs772633744 923 dbSNP
rs773553087 928 dbSNP
rs1217506515 930 dbSNP
rs761114078 932 dbSNP
rs770991791 936 dbSNP
rs1233623156 945 dbSNP
rs776940988 949 dbSNP
rs759484022 953 dbSNP
rs1248745083 954 dbSNP
rs1451437894 955 dbSNP
rs765382649 957 dbSNP
rs775747340 958 dbSNP
rs1485611663 963 dbSNP
rs762976451 967 dbSNP
rs770451764 970 dbSNP
rs751249856 971 dbSNP
rs1399211745 974 dbSNP
rs757108953 978 dbSNP
rs1161442281 979 dbSNP
rs1389884653 981 dbSNP
rs767031857 991 dbSNP
rs1384445937 992 dbSNP
rs750068867 994 dbSNP
rs755805856 998 dbSNP
rs1398929146 1005 dbSNP
rs779535622 1007 dbSNP
rs748855319 1008 dbSNP
rs1471195332 1013 dbSNP
rs890649674 1014 dbSNP
rs1176395459 1016 dbSNP
rs371002908 1018 dbSNP
rs778347291 1022 dbSNP
rs558406257 1024 dbSNP
rs996005765 1025 dbSNP
rs112259177 1027 dbSNP
rs771347855 1034 dbSNP
rs1194613351 1036 dbSNP
rs1444933583 1039 dbSNP
rs1487510539 1041 dbSNP
rs1260671961 1042 dbSNP
rs536928858 1046 dbSNP
rs746054756 1047 dbSNP
rs776053615 1049 dbSNP
rs201614744 1053 dbSNP
rs868005472 1054 dbSNP
rs770203824 1057 dbSNP
rs201228857 1058 dbSNP
rs1261002315 1059 dbSNP
rs775694199 1068 dbSNP
rs1367841924 1070 dbSNP
rs763133929 1071 dbSNP
rs764086801 1091 dbSNP
rs1164672581 1095 dbSNP
rs1358457553 1096 dbSNP
rs1272008043 1098 dbSNP
rs899242454 1104 dbSNP
rs185181782 1108 dbSNP
rs1303115514 1111 dbSNP
rs1380840864 1112 dbSNP
rs994809910 1113 dbSNP
rs761709308 1116 dbSNP
rs1311319980 1118 dbSNP
rs951827028 1124 dbSNP
rs1382706627 1129 dbSNP
rs767313521 1132 dbSNP
rs1288767298 1140 dbSNP
rs750253080 1142 dbSNP
rs755752623 1143 dbSNP
rs374638598 1145 dbSNP
rs753277275 1146 dbSNP
rs1180207402 1156 dbSNP
rs368369545 1161 dbSNP
rs778093003 1162 dbSNP
rs747528040 1165 dbSNP
rs371893312 1166 dbSNP
rs567321137 1167 dbSNP
rs868016389 1168 dbSNP
rs1360556644 1170 dbSNP
rs1233616145 1174 dbSNP
rs746289199 1185 dbSNP
rs770077298 1186 dbSNP
rs761098710 1192 dbSNP
rs1371963219 1198 dbSNP
rs1183875509 1203 dbSNP
rs775888303 1213 dbSNP
rs749336880 1223 dbSNP
rs554045801 1227 dbSNP
rs764186573 1236 dbSNP
rs1312151323 1237 dbSNP
rs1241078853 1240 dbSNP
rs1375272742 1241 dbSNP
rs1223600506 1243 dbSNP
rs376549597 1246 dbSNP
rs774336547 1248 dbSNP
rs573108619 1249 dbSNP
rs1230435741 1250 dbSNP
rs1262730845 1251 dbSNP
rs761806819 1255 dbSNP
rs61742849 1261 dbSNP
rs1248480991 1263 dbSNP
rs767284978 1264 dbSNP
rs372079100 1267 dbSNP
rs988166074 1268 dbSNP
rs1427089710 1269 dbSNP
rs61742852 1271 dbSNP
rs1409871638 1274 dbSNP
rs753510960 1277 dbSNP
rs1163627412 1279 dbSNP
rs1423859617 1284 dbSNP
rs759235145 1292 dbSNP
rs764770588 1301 dbSNP
rs762530499 1302 dbSNP
rs1442030638 1308 dbSNP
rs368987666 1310 dbSNP
rs757765777 1311 dbSNP
rs374379141 1313 dbSNP
rs750779760 1314 dbSNP
rs1318819992 1316 dbSNP
rs756571488 1318 dbSNP
rs780618427 1320 dbSNP
rs1437314470 1321 dbSNP
rs1255877867 1322 dbSNP
rs572884082 1323 dbSNP
rs868168331 1326 dbSNP
rs1248362439 1332 dbSNP
rs768828955 1336 dbSNP
rs1036459559 1337 dbSNP
rs375960843 1339 dbSNP
rs748193223 1341 dbSNP
rs1478564304 1344 dbSNP
rs370142744 1346 dbSNP
rs773163756 1347 dbSNP
rs760410662 1348 dbSNP
rs1405428323 1357 dbSNP
rs1166166902 1358 dbSNP
rs373072540 1360 dbSNP
rs764754240 1363 dbSNP
rs1352089584 1364 dbSNP
rs1434797399 1371 dbSNP
rs1376044681 1372 dbSNP
rs1278102315 1373 dbSNP
rs574139129 1374 dbSNP
rs776450515 1380 dbSNP
rs759219581 1381 dbSNP
rs377346875 1382 dbSNP
rs764166194 1384 dbSNP
rs766037852 1384 dbSNP
rs752191367 1388 dbSNP
rs1303250494 1390 dbSNP
rs1276532765 1391 dbSNP
rs762404403 1404 dbSNP
rs1363165354 1407 dbSNP
rs1228932095 1408 dbSNP
rs768021509 1409 dbSNP
rs944017460 1410 dbSNP
rs1360760657 1422 dbSNP
rs1415358692 1424 dbSNP
rs750948585 1430 dbSNP
rs200352738 1431 dbSNP
rs377019454 1434 dbSNP
rs1400908798 1453 dbSNP
rs780563043 1456 dbSNP
rs754312299 1460 dbSNP
rs1191135264 1467 dbSNP
rs1469575430 1471 dbSNP
rs1269591597 1480 dbSNP
rs1241131043 1483 dbSNP
rs1472862092 1486 dbSNP
rs1183054025 1487 dbSNP
rs1416614774 1489 dbSNP
rs1201491022 1496 dbSNP
rs370327633 1499 dbSNP
rs779008873 1500 dbSNP
rs751273415 1502 dbSNP
rs1361642796 1505 dbSNP
rs748217127 1516 dbSNP
rs1316550614 1521 dbSNP
rs1216797894 1525 dbSNP
rs758427858 1526 dbSNP
rs1282606388 1528 dbSNP
rs754482464 1530 dbSNP
rs1448879653 1532 dbSNP
rs777879096 1533 dbSNP
rs750505991 1535 dbSNP
rs1245237707 1537 dbSNP
rs770917797 1544 dbSNP
rs558572172 1552 dbSNP
rs1050368497 1553 dbSNP
rs1285825102 1557 dbSNP
rs745661270 1561 dbSNP
rs758500868 1565 dbSNP
rs754073279 1575 dbSNP
rs887574880 1578 dbSNP
rs767051128 1579 dbSNP
rs775030755 1585 dbSNP
rs1183571405 1587 dbSNP
rs1280862573 1591 dbSNP
rs1349171527 1593 dbSNP
rs1301939632 1595 dbSNP
rs762718175 1595 dbSNP
rs1006067794 1596 dbSNP
rs558774230 1597 dbSNP
rs1157143633 1598 dbSNP
rs1156478304 1604 dbSNP
rs1384544985 1611 dbSNP
rs774076029 1616 dbSNP
rs36035775 1618 dbSNP
rs752655375 1622 dbSNP
rs761251962 1624 dbSNP
rs903076047 1626 dbSNP
rs767006695 1627 dbSNP
rs575327853 1628 dbSNP
rs755330687 1630 dbSNP
rs765449029 1632 dbSNP
rs752838959 1640 dbSNP
rs150623953 1645 dbSNP
rs777825715 1646 dbSNP
rs375686992 1647 dbSNP
rs756024137 1647 dbSNP
rs1276045554 1650 dbSNP
rs1460521773 1652 dbSNP
rs1198681215 1654 dbSNP
rs1239343916 1672 dbSNP
rs747146017 1675 dbSNP
rs1180116821 1677 dbSNP
rs757124336 1681 dbSNP
rs1478552469 1682 dbSNP
rs781110393 1686 dbSNP
rs745629495 1687 dbSNP
rs376036707 1688 dbSNP
rs370236916 1693 dbSNP
rs1222248916 1694 dbSNP
rs748892414 1698 dbSNP
rs768480913 1699 dbSNP
rs773941552 1704 dbSNP
rs201876414 1717 dbSNP
rs777579725 1717 dbSNP
rs1035392451 1718 dbSNP
rs766953489 1722 dbSNP
rs777025503 1724 dbSNP
rs749041656 1726 dbSNP
rs760136876 1729 dbSNP
rs1259356793 1730 dbSNP
rs1315525592 1733 dbSNP
rs1194649894 1736 dbSNP
rs765486888 1737 dbSNP
rs374390206 1740 dbSNP
rs986469748 1743 dbSNP
rs912142701 1746 dbSNP
rs758601731 1747 dbSNP
rs574114035 1750 dbSNP
rs757496117 1750 dbSNP
rs543199080 1758 dbSNP
rs992113144 1761 dbSNP
rs1171479446 1763 dbSNP
rs1425946538 1764 dbSNP
rs779263271 1766 dbSNP
rs1167303656 1769 dbSNP
rs1391314751 1773 dbSNP
rs746157733 1781 dbSNP
rs1329299293 1783 dbSNP
rs1301006000 1784 dbSNP
rs764309071 1785 dbSNP
rs772257952 1786 dbSNP
rs201081799 1790 dbSNP
rs775456324 1790 dbSNP
rs969264488 1800 dbSNP
rs371509953 1802 dbSNP
rs1461135443 1813 dbSNP
rs1252476826 1814 dbSNP
rs141967702 1823 dbSNP
rs371032269 1823 dbSNP
rs753137421 1823 dbSNP
rs1000105294 1824 dbSNP
rs1368695510 1834 dbSNP
rs1227251421 1835 dbSNP
rs1237175942 1836 dbSNP
rs1307636007 1837 dbSNP
rs1353084715 1839 dbSNP
rs1241046497 1840 dbSNP
rs1286419519 1845 dbSNP
rs1450140842 1847 dbSNP
rs1221075333 1853 dbSNP
rs551492194 1854 dbSNP
rs1401234702 1857 dbSNP
rs1298720399 1858 dbSNP
rs915986673 1878 dbSNP
rs375211202 1880 dbSNP
rs950109873 1881 dbSNP
rs1169780649 1885 dbSNP
rs1445480075 1887 dbSNP
rs1378472512 1890 dbSNP
rs766594582 1896 dbSNP
rs1438988233 1909 dbSNP
rs921224223 1930 dbSNP
rs1158692049 1934 dbSNP
rs932675599 1938 dbSNP
rs1251655814 1939 dbSNP
rs576959685 1940 dbSNP
rs1403275507 1946 dbSNP
rs757435026 1951 dbSNP
rs887717764 1954 dbSNP
rs1249116770 1958 dbSNP
rs1203744060 1978 dbSNP
rs1359523414 1979 dbSNP
rs80095204 1993 dbSNP
rs530832778 1994 dbSNP
rs550413418 1996 dbSNP
rs1339708659 1997 dbSNP
rs897572781 1999 dbSNP
rs1376892106 2005 dbSNP
rs1307383490 2016 dbSNP
rs567560945 2017 dbSNP
rs1054364735 2022 dbSNP
rs1281392194 2024 dbSNP
rs1307320831 2032 dbSNP
rs1425450909 2037 dbSNP
rs1354293303 2041 dbSNP
rs1367490567 2043 dbSNP
rs1227970949 2046 dbSNP
rs1035442987 2047 dbSNP
rs1457551016 2053 dbSNP
rs893011619 2055 dbSNP
rs1184340364 2056 dbSNP
rs996672387 2059 dbSNP
rs1215391000 2060 dbSNP
rs115474506 2061 dbSNP
rs890851185 2073 dbSNP
rs189247464 2075 dbSNP
rs1490382213 2077 dbSNP
rs1293298860 2083 dbSNP
rs1012599003 2084 dbSNP
rs1219831157 2091 dbSNP
rs1457292726 2092 dbSNP
rs566585989 2093 dbSNP
rs181215140 2094 dbSNP
rs1261102117 2105 dbSNP
rs1240990090 2136 dbSNP
rs1022272513 2138 dbSNP
rs969021380 2142 dbSNP
rs1015174284 2150 dbSNP
rs977547133 2155 dbSNP
rs1301326703 2156 dbSNP
rs1471491907 2163 dbSNP
rs1385868075 2168 dbSNP
rs924822112 2177 dbSNP
rs965519913 2182 dbSNP
rs1411650601 2186 dbSNP
rs562708867 2188 dbSNP
rs1481679791 2194 dbSNP
rs961021917 2208 dbSNP
rs972329228 2209 dbSNP
rs566357607 2217 dbSNP
rs1169053359 2220 dbSNP
rs1484797156 2232 dbSNP
rs952243570 2241 dbSNP
rs1224082281 2248 dbSNP
rs756624895 2256 dbSNP
rs1392514952 2257 dbSNP
rs139680590 2270 dbSNP
rs1048411909 2272 dbSNP
rs1320579563 2274 dbSNP
rs1380722860 2275 dbSNP
rs909107333 2298 dbSNP
rs1388400140 2301 dbSNP
rs941989715 2318 dbSNP
rs879092805 2326 dbSNP
rs1338777892 2331 dbSNP
rs1447473576 2337 dbSNP
rs1284836659 2340 dbSNP
rs1373127238 2341 dbSNP
rs532292170 2341 dbSNP
rs76579897 2341 dbSNP
rs894278676 2341 dbSNP
rs1036196661 2342 dbSNP
rs398089532 2351 dbSNP
rs552154392 2352 dbSNP
rs1247187921 2356 dbSNP
rs537853402 2361 dbSNP
rs1317017495 2363 dbSNP
rs574701026 2364 dbSNP
rs867461807 2366 dbSNP
rs1274948827 2368 dbSNP
rs1440625924 2369 dbSNP
rs938504658 2370 dbSNP
rs1257581318 2371 dbSNP
rs1054395386 2372 dbSNP
rs893045701 2373 dbSNP
rs1364649713 2378 dbSNP
rs1476008623 2382 dbSNP
rs932490576 2387 dbSNP
rs1191010456 2404 dbSNP
rs1454972324 2417 dbSNP
rs1404322877 2425 dbSNP
rs1334137293 2430 dbSNP
rs1410967390 2432 dbSNP
rs1423385460 2436 dbSNP
rs1169075290 2438 dbSNP
rs1056875150 2451 dbSNP
rs1183818159 2457 dbSNP
rs1389227628 2457 dbSNP
rs1446266429 2464 dbSNP
rs1049556468 2467 dbSNP
rs890871322 2474 dbSNP
rs574274169 2476 dbSNP
rs1275216996 2477 dbSNP
rs1462753710 2480 dbSNP
rs1341533045 2487 dbSNP
rs1248415121 2498 dbSNP
rs1170000138 2509 dbSNP
rs1400760855 2510 dbSNP
rs1337990895 2512 dbSNP
rs1327420558 2513 dbSNP
rs1414376590 2515 dbSNP
rs1427337702 2524 dbSNP
rs1369371843 2532 dbSNP
rs1008012709 2550 dbSNP
rs1357403637 2557 dbSNP
rs1163884963 2571 dbSNP
rs778205249 2576 dbSNP
rs1411397437 2578 dbSNP
rs894245227 2581 dbSNP
rs1470481544 2590 dbSNP
rs749827563 2598 dbSNP
rs1012980004 2602 dbSNP
rs1179925596 2633 dbSNP
rs1482796687 2645 dbSNP
rs995121300 2646 dbSNP
rs1225039237 2651 dbSNP
rs1320070472 2654 dbSNP
rs1027876926 2656 dbSNP
rs1021320101 2660 dbSNP
rs770361797 2661 dbSNP
rs866308236 2667 dbSNP
rs992071909 2670 dbSNP
rs1023101706 2684 dbSNP
rs999023404 2685 dbSNP
rs1031891262 2689 dbSNP
rs1409730156 2690 dbSNP
rs1349361316 2692 dbSNP
rs965489015 2706 dbSNP
rs1325648574 2707 dbSNP
rs1303190410 2709 dbSNP
rs1406402796 2710 dbSNP
rs1347700621 2711 dbSNP
rs976905581 2712 dbSNP
rs1227973260 2717 dbSNP
rs1028807092 2729 dbSNP
rs185828319 2733 dbSNP
rs1401145148 2754 dbSNP
rs1409856662 2756 dbSNP
rs1156881910 2761 dbSNP
rs542110250 2767 dbSNP
rs560885678 2777 dbSNP
rs909926472 2786 dbSNP
rs559879776 2793 dbSNP
rs1487538878 2796 dbSNP
rs1246411887 2797 dbSNP
rs573114823 2800 dbSNP
rs1280464036 2807 dbSNP
rs1449147702 2810 dbSNP
rs1266573660 2813 dbSNP
rs773865414 2814 dbSNP
rs143155807 2816 dbSNP
rs1283386611 2818 dbSNP
rs565040870 2820 dbSNP
rs1262102185 2830 dbSNP
rs1220514524 2835 dbSNP
rs1364873430 2838 dbSNP
rs745520835 2839 dbSNP
rs1430945951 2842 dbSNP
rs147480295 2847 dbSNP
rs1318216629 2849 dbSNP
rs1456650130 2857 dbSNP
rs914511318 2859 dbSNP
rs1057012394 2861 dbSNP
rs1174760343 2867 dbSNP
rs1377367618 2869 dbSNP
rs891000939 2876 dbSNP
rs1246581022 2883 dbSNP
rs1417869405 2883 dbSNP
rs754724229 2883 dbSNP
rs1462039238 2889 dbSNP
rs1265617330 2893 dbSNP
rs371493864 2905 dbSNP
rs894203390 2908 dbSNP
rs948531994 2919 dbSNP
rs1309954081 2921 dbSNP
rs1299939935 2930 dbSNP
rs1036770233 2946 dbSNP
rs1386022087 2954 dbSNP
rs1384114275 2962 dbSNP
rs1434180124 2964 dbSNP
rs896881494 2969 dbSNP
rs1043201393 2973 dbSNP
rs1320096623 2979 dbSNP
rs1358688246 2985 dbSNP
rs1171145304 2992 dbSNP
rs1329101418 2993 dbSNP
rs199898252 3007 dbSNP
rs888036196 3021 dbSNP
rs1482669706 3025 dbSNP
rs561171435 3032 dbSNP
rs1445663797 3035 dbSNP
rs998489923 3053 dbSNP
rs1349955805 3064 dbSNP
rs1237395508 3066 dbSNP
rs1284655563 3073 dbSNP
rs1486011595 3078 dbSNP
rs529986669 3079 dbSNP
rs1343675193 3082 dbSNP
rs1023634577 3093 dbSNP
rs971609973 3095 dbSNP
rs1383284227 3096 dbSNP
rs1314562396 3098 dbSNP
rs1265734365 3105 dbSNP
rs1003027786 3107 dbSNP
rs1451334031 3111 dbSNP
rs1031772636 3112 dbSNP
rs1431783472 3136 dbSNP
rs1368753979 3140 dbSNP
rs1168253620 3142 dbSNP
rs1425490659 3146 dbSNP
rs998462349 3146 dbSNP
rs1387475370 3159 dbSNP
rs1163045530 3162 dbSNP
rs1423582724 3163 dbSNP
rs1251952989 3167 dbSNP
rs1031859849 3175 dbSNP
rs1194807797 3180 dbSNP
rs1179430697 3184 dbSNP
rs990150695 3185 dbSNP
rs1397508553 3189 dbSNP
rs1248921477 3196 dbSNP
rs1204043312 3200 dbSNP
rs1438370046 3201 dbSNP
rs1267007419 3203 dbSNP
rs1359628771 3203 dbSNP
rs914543821 3204 dbSNP
rs1320889260 3205 dbSNP
rs1307670076 3211 dbSNP
rs954183855 3212 dbSNP
rs901455581 3216 dbSNP
rs1348737352 3221 dbSNP
rs1307422996 3222 dbSNP
rs985419930 3228 dbSNP
rs1158175847 3234 dbSNP
rs760434397 3237 dbSNP
rs1393215217 3242 dbSNP
rs1291993155 3243 dbSNP
rs764000759 3258 dbSNP
rs1364713568 3260 dbSNP
rs912455930 3267 dbSNP
rs1028523225 3271 dbSNP
rs943888059 3276 dbSNP
rs1364425970 3277 dbSNP
rs1409136745 3280 dbSNP
rs188191482 3290 dbSNP
rs1490367158 3293 dbSNP
rs1269109629 3297 dbSNP
rs1291957507 3302 dbSNP
rs954265398 3305 dbSNP
rs1261047628 3307 dbSNP
rs780840878 3307 dbSNP
rs1230153223 3310 dbSNP
rs776666578 3311 dbSNP
rs1326911408 3314 dbSNP
rs1287633057 3316 dbSNP
rs1224274111 3317 dbSNP
rs1439810174 3317 dbSNP
rs13524 3318 dbSNP
rs1299526920 3320 dbSNP
rs1048126059 3322 dbSNP
rs1386378320 3327 dbSNP
rs1386171927 3345 dbSNP
rs1326314598 3350 dbSNP
rs1373160051 3356 dbSNP
rs180962624 3360 dbSNP
rs1177783381 3368 dbSNP
rs1478094284 3369 dbSNP
rs772716871 3371 dbSNP
rs768940931 3374 dbSNP
rs1432198436 3375 dbSNP
rs1044678221 3377 dbSNP
rs1240760842 3378 dbSNP
rs566880038 3394 dbSNP
rs1263244635 3398 dbSNP
rs1267466815 3398 dbSNP
rs907418062 3399 dbSNP
rs72689987 3400 dbSNP
rs919159143 3402 dbSNP
rs1255259927 3404 dbSNP
rs938609789 3407 dbSNP
rs993063365 3409 dbSNP
rs1031805115 3411 dbSNP
rs956115026 3412 dbSNP
rs1338016844 3417 dbSNP
rs1416611953 3422 dbSNP
rs878967191 3432 dbSNP
rs1403763200 3433 dbSNP
rs1170229536 3437 dbSNP
rs915785529 3437 dbSNP
rs1465092570 3440 dbSNP
rs948567725 3444 dbSNP
rs1011701008 3450 dbSNP
rs1190072245 3454 dbSNP
rs1447483826 3457 dbSNP
rs1022110660 3458 dbSNP
rs751661069 3462 dbSNP
rs1444000788 3468 dbSNP
rs373087118 3483 dbSNP
rs1276608135 3499 dbSNP
rs985836503 3500 dbSNP
rs1162957089 3502 dbSNP
rs1368169574 3513 dbSNP
rs1226434795 3518 dbSNP
rs912500110 3519 dbSNP
rs1316126997 3522 dbSNP
rs568967183 3540 dbSNP
rs1462140116 3541 dbSNP
rs1450826913 3542 dbSNP
rs1165425249 3544 dbSNP
rs1334075282 3551 dbSNP
rs755200589 3561 dbSNP
rs537988351 3567 dbSNP
rs1394984107 3570 dbSNP
rs1370610090 3574 dbSNP
rs1170116916 3580 dbSNP
rs554530000 3584 dbSNP
rs965230869 3587 dbSNP
rs1389325781 3589 dbSNP
rs1163565558 3597 dbSNP
rs866525651 3600 dbSNP
rs1473648847 3608 dbSNP
rs925722920 3611 dbSNP
rs1235731729 3621 dbSNP
rs972551005 3623 dbSNP
rs113634983 3628 dbSNP
rs918455006 3631 dbSNP
rs1373431830 3632 dbSNP
rs1203324525 3633 dbSNP
rs931147809 3648 dbSNP
rs1048165602 3653 dbSNP
rs916301021 3653 dbSNP
rs567996381 3654 dbSNP
rs1309940258 3657 dbSNP
rs1240325207 3662 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 260425.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUC--ACGUCu 5'
            :| ||||   | |||  || || 
Target 5' acUCUGCCA---CCCAGGCUGGAG- 3'
3 - 23
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000307546.9 | 3UTR | CACUCUGCCACCCAGGCUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000307546.9 | 3UTR | UCACUCUGCCACCCAGGCUGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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