miRTarBase - #MIRT540720


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pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GUF1   
Synonyms EF-4, EF4, EIEE40
Description GUF1 homolog, GTPase
Transcript NM_021927   
Expression
Putative miRNA Targets on GUF1
3'UTR of GUF1
(miRNA target sites are highlighted)		 
>GUF1|NM_021927|3'UTR
   1 TTGGTGGGAAAACAAAGAATTTTCATTGCAATTTGTAATATGCTGACAACAGAAAGAAAATTATAAAATTTGCTTGTTAC
  81 TTTCAGGGTATTCAGGTTCAAATAACCTACTAGTCTTTCGTTGAAAGGGAGTAGTTAGTGGGTAGGCAAGAGCTTAGATT
 161 TTGAAGCCATGTTGCCTGTTCTCAAATATCTGTTCCAACCACTCACTAGTAAGGTGACCGTGGCCAGATTAACCTTTGTT
 241 TCCTCTTCAGTAAAATCGAGATTATACTACTACCTACATAAGTTGTTGTTGTGAAGATTAAATGAGGTAATACGTTAAAT
 321 ATTCAGAGGTGCAAGACACATAGTAAGCACTCAATTGTAACTACAGTTAAGTCCTTAAATGCCATCGAAAGGTTCTTAGA
 401 AACTGACTTTAAGCAAAATGACACGTAGCACAATGTTCTTGAATGATGTCATTTCCTTAAGTGGTTTGTAACATCGATGA
 481 GGAAAAAAAATTGGTTTATGCGTCATTTCATTTTATTTTTATTTATTTTTTGAGACAGAGTCTTGCCCTGTCGCCCAGGC
 561 TGGAGTGCAATGGCACAATCTCGACTCACTGCAACCTCTGCCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCATT
 641 ACAGGCGTGCACCACCATGCTCGGCTAATTTTTTGTATCTTTAGTAGAGTCGGGGTTTCACCATGTTGGCCAGGCTGGTC
 721 TTGAACTCCTGACCTCGTGATCCACCCACCGTGGCCTCCCAAAGTGCTGATTACAGGTGTGAGCCACCATGCCCAGCCAT
 801 GTCATTTCATTTAAAGTCACAATTTCCATGAATCTCAACAAGTGAGGACCTGCTATATTTTGTTGCATGCAGTTTTTCTT
 881 TACGGACACTAAAAGGCCCCATACTTAAGATTCCATCTACTTTAAGTTTAAAGGATTTTCAGAATCACCTTAAGTGTCAA
 961 ATTTGTTAGCAGGATTAATTGATATGAATTCACTTATTAAACAGTAAACTCAAATAACATAGACATCAAATAACAGACAT
1041 CTGCTCTAGTTAATGATAAAATGTTTATAGATTTTATCAGGTGGTTAGTTTGAAACTAAATGGTTTACATCTAAATTAAG
1121 GGCAGGAGCTGTCTTTCAGACATTCAAAACGCATTTGTGTAAAATGACAGGTGTTTGGTATTACCAGGAACTCATAATGA
1201 CATTTTAATAATTATTGTCTAAATTTCATAATCGAAGCGATTTTAGAGTAGTTAACTTGAGATTTCACAGCCAGTAAATG
1281 GCTGTATTTCTCCAGAGCTCTCAGCTCCCATGTTTATTCAGCCAACGAACAAACCAGACTGCAGACTGTATTAGAGCAAG
1361 ACAACATCATTTAGCCATTGATTTTTATCTTCTACCTTGAATGAATTGAATGAAGAAAATGTCTTTTAGGGATAAACACT
1441 ATCAAGGATGAATTTTATACTAAGGTTATATGAAAGAAAAATCTCAAAACCACTAAGCCAAAGGGAAGTCAAGCTGGGAA
1521 CTGATTGAGGCAAACCTGCCTCCCATTTTATTCCTAAATAAGACAGCCACAAAGATAAAATTTGCTCACAAGGGAATTCC
1601 TTATGGACAAAGAACTCAAAGTCTTCACATGAAACAAATGCATAAATGATTGCTTTCTCTGTTTCATGTTTCACTAAGCC
1681 AGATTAAGGTATAACTGACTATTCCTCTACTCTCCTCTCACATGTAAATTGTATATTCAGTGAAAGGCTAATCAGAAACT
1761 CAAAAAAATGCAACCCTTTCTCTCTTACCTGCCTATGCTTGAAGCCCCCGCCCCTCTTCAAGTTGTCCTGCCTTTCAAGA
1841 CCAATGTACACCTTACACATACTGATTGATGTCTCATGTCTCTCTAAAATGTGTAAAACCAAGCTGTGCCCCAACCACCT
1921 TGGGCACATGTGGTGAGGACCTCCTGAGGCTGTGTCATGGGCACACCTTAACCCTGGGAAAATAAACTTTCTAAACTGAA
2001 AAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acaUGUCGUCCG-UGUCUGUcc 5'
             ||| ||  : |||||||  
Target 5' tagACATCAAATAACAGACAtc 3'
 1020 - 1041 134.00 -9.50
2 
miRNA  3' acaugUCGUCCG--UGUCUGUcc 5'
               ||| | |   ||||||  
Target 5' gcaggAGCTGTCTTTCAGACAtt 3'
 1122 - 1144 126.00 -11.00
3 
miRNA  3' acaUGU-CGUCCG-UGUCUGUCc 5'
             |:| || | | ||||| || 
Target 5' gtaATATGCTGACAACAGAAAGa 3'
 35 - 57 122.00 -7.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30515734 2 COSMIC
COSN26978335 18 COSMIC
COSN30114707 52 COSMIC
COSN21997000 58 COSMIC
COSN31563922 73 COSMIC
COSN30136112 115 COSMIC
COSN30130836 120 COSMIC
COSN2030530 202 COSMIC
COSN22866517 291 COSMIC
COSN16301124 393 COSMIC
COSN19252160 647 COSMIC
COSN27868379 740 COSMIC
COSN9041996 868 COSMIC
COSN2030532 911 COSMIC
COSN29956643 978 COSMIC
COSN6580659 1132 COSMIC
COSN16421552 1216 COSMIC
COSN27154936 1235 COSMIC
COSN21230406 1303 COSMIC
COSN15670401 1435 COSMIC
COSN5571797 1649 COSMIC
COSN19456708 1767 COSMIC
COSN28201668 1913 COSMIC
COSN2030534 2013 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1343907343 4 dbSNP
rs1210571203 5 dbSNP
rs762919323 14 dbSNP
rs1198230812 17 dbSNP
rs1252062561 23 dbSNP
rs766645409 25 dbSNP
rs776032333 25 dbSNP
rs763429652 26 dbSNP
rs1249062280 28 dbSNP
rs1346842401 30 dbSNP
rs1181400293 34 dbSNP
rs764462977 38 dbSNP
rs1481282610 42 dbSNP
rs1199932248 46 dbSNP
rs1378417169 48 dbSNP
rs774371244 51 dbSNP
rs373728718 54 dbSNP
rs6853861 55 dbSNP
rs959771516 59 dbSNP
rs1182044129 64 dbSNP
rs1451132664 76 dbSNP
rs888421576 82 dbSNP
rs1004235897 87 dbSNP
rs1471454161 107 dbSNP
rs186446521 110 dbSNP
rs1015621477 112 dbSNP
rs1158221857 114 dbSNP
rs761213594 120 dbSNP
rs1450302290 121 dbSNP
rs920310249 124 dbSNP
rs764582628 125 dbSNP
rs1250006344 134 dbSNP
rs6827446 143 dbSNP
rs1129490 153 dbSNP
rs983098252 158 dbSNP
rs574346112 163 dbSNP
rs1358596521 165 dbSNP
rs1443967406 167 dbSNP
rs1272182935 169 dbSNP
rs1227235477 177 dbSNP
rs1466641670 186 dbSNP
rs1003833585 190 dbSNP
rs1332208066 191 dbSNP
rs1304736148 195 dbSNP
rs541747596 199 dbSNP
rs112313931 204 dbSNP
rs570569882 213 dbSNP
rs78933864 215 dbSNP
rs1353176696 219 dbSNP
rs1409600666 220 dbSNP
rs545104675 221 dbSNP
rs367801066 228 dbSNP
rs1054305630 231 dbSNP
rs1022018161 235 dbSNP
rs966456316 235 dbSNP
rs977714187 240 dbSNP
rs1182425435 241 dbSNP
rs893868155 243 dbSNP
rs1473708621 244 dbSNP
rs911595957 249 dbSNP
rs1352848468 251 dbSNP
rs1217930110 252 dbSNP
rs1010967164 258 dbSNP
rs1278578901 259 dbSNP
rs1312783741 270 dbSNP
rs974687687 278 dbSNP
rs190616258 279 dbSNP
rs902555229 281 dbSNP
rs930474268 282 dbSNP
rs1372791726 283 dbSNP
rs1003506607 285 dbSNP
rs1035641993 286 dbSNP
rs1350563153 287 dbSNP
rs1466710064 290 dbSNP
rs1166946986 291 dbSNP
rs751259643 314 dbSNP
rs1481906313 315 dbSNP
rs1181343950 319 dbSNP
rs1472835684 326 dbSNP
rs1253669965 330 dbSNP
rs1189150661 341 dbSNP
rs1487928692 343 dbSNP
rs1265548121 344 dbSNP
rs888516091 345 dbSNP
rs1181150318 355 dbSNP
rs1012817005 358 dbSNP
rs1229515656 358 dbSNP
rs1352765475 361 dbSNP
rs1299580874 362 dbSNP
rs575694689 364 dbSNP
rs906574582 367 dbSNP
rs1189355930 379 dbSNP
rs1295371317 380 dbSNP
rs951774202 386 dbSNP
rs114108687 387 dbSNP
rs148326596 388 dbSNP
rs1457687377 394 dbSNP
rs752533788 411 dbSNP
rs1175681394 414 dbSNP
rs1011011114 419 dbSNP
rs1432240094 425 dbSNP
rs965666031 425 dbSNP
rs975795323 426 dbSNP
rs1167412223 428 dbSNP
rs556686996 429 dbSNP
rs977848227 433 dbSNP
rs1246855560 434 dbSNP
rs1308890454 463 dbSNP
rs113170166 469 dbSNP
rs931945235 474 dbSNP
rs990369757 476 dbSNP
rs371330991 477 dbSNP
rs575098817 483 dbSNP
rs1434770157 484 dbSNP
rs975035525 485 dbSNP
rs1433133830 486 dbSNP
rs1364614440 493 dbSNP
rs946794356 500 dbSNP
rs1042418338 503 dbSNP
rs1386966005 503 dbSNP
rs902608562 504 dbSNP
rs939324259 515 dbSNP
rs768551441 518 dbSNP
rs1368987865 520 dbSNP
rs777568095 537 dbSNP
rs1219299901 546 dbSNP
rs1447232246 546 dbSNP
rs1056497028 548 dbSNP
rs1389044574 551 dbSNP
rs543734710 553 dbSNP
rs1012541205 554 dbSNP
rs13125773 559 dbSNP
rs1200379438 568 dbSNP
rs940084895 571 dbSNP
rs370968772 579 dbSNP
rs183171410 583 dbSNP
rs1341677940 584 dbSNP
rs1219122150 589 dbSNP
rs1298427768 595 dbSNP
rs1246053585 596 dbSNP
rs1338764028 599 dbSNP
rs1332192986 605 dbSNP
rs1478339778 606 dbSNP
rs1005059673 618 dbSNP
rs1195562090 622 dbSNP
rs1388353192 624 dbSNP
rs1314443954 625 dbSNP
rs927921210 629 dbSNP
rs777864340 647 dbSNP
rs7676079 648 dbSNP
rs113522604 650 dbSNP
rs1366168157 652 dbSNP
rs895388198 658 dbSNP
rs1424857559 661 dbSNP
rs976138037 663 dbSNP
rs761895480 664 dbSNP
rs953413434 665 dbSNP
rs150460932 668 dbSNP
rs535298460 676 dbSNP
rs1350942261 678 dbSNP
rs1283622124 682 dbSNP
rs1244010316 683 dbSNP
rs1340917566 685 dbSNP
rs914497306 687 dbSNP
rs1294912613 688 dbSNP
rs1443818528 692 dbSNP
rs553685058 695 dbSNP
rs945842603 706 dbSNP
rs1308300248 719 dbSNP
rs1319152502 723 dbSNP
rs1411272729 725 dbSNP
rs575242565 730 dbSNP
rs1162086511 735 dbSNP
rs977243040 737 dbSNP
rs1362342897 738 dbSNP
rs1420582955 741 dbSNP
rs924015539 743 dbSNP
rs889789875 745 dbSNP
rs939475103 748 dbSNP
rs6811584 749 dbSNP
rs542277117 751 dbSNP
rs539019970 752 dbSNP
rs1252956094 753 dbSNP
rs370485454 755 dbSNP
rs1341122300 756 dbSNP
rs746152378 757 dbSNP
rs1289244413 761 dbSNP
rs948058814 762 dbSNP
rs1358545443 773 dbSNP
rs1275045290 783 dbSNP
rs966074222 793 dbSNP
rs557116445 799 dbSNP
rs367942402 801 dbSNP
rs1005028632 814 dbSNP
rs1328930910 818 dbSNP
rs1322322486 823 dbSNP
rs1036558703 826 dbSNP
rs772154625 837 dbSNP
rs575652732 841 dbSNP
rs1189360958 845 dbSNP
rs984747055 847 dbSNP
rs1413197117 848 dbSNP
rs1160586644 853 dbSNP
rs997313013 854 dbSNP
rs370862740 856 dbSNP
rs1199845836 863 dbSNP
rs953039159 864 dbSNP
rs1163017048 865 dbSNP
rs772373867 881 dbSNP
rs1206765368 882 dbSNP
rs866043773 883 dbSNP
rs62305382 884 dbSNP
rs961881765 885 dbSNP
rs967280518 886 dbSNP
rs1225200852 897 dbSNP
rs374054548 897 dbSNP
rs1463371267 906 dbSNP
rs75512168 913 dbSNP
rs973200186 917 dbSNP
rs758752762 921 dbSNP
rs977206959 927 dbSNP
rs1372605454 934 dbSNP
rs1433691756 938 dbSNP
rs928511675 943 dbSNP
rs1331336818 944 dbSNP
rs961068952 945 dbSNP
rs1327811654 956 dbSNP
rs3198064 958 dbSNP
rs1320828623 964 dbSNP
rs992223074 966 dbSNP
rs1413186314 974 dbSNP
rs1445299673 974 dbSNP
rs939460001 986 dbSNP
rs916656211 994 dbSNP
rs780778595 995 dbSNP
rs144127156 1003 dbSNP
rs573486256 1007 dbSNP
rs1242692628 1010 dbSNP
rs1464396906 1010 dbSNP
rs1043961839 1012 dbSNP
rs1266155809 1015 dbSNP
rs575744439 1015 dbSNP
rs1219474124 1019 dbSNP
rs1277632478 1019 dbSNP
rs1349512674 1020 dbSNP
rs909453365 1021 dbSNP
rs902659259 1031 dbSNP
rs940943087 1040 dbSNP
rs540856617 1050 dbSNP
rs6812211 1053 dbSNP
rs1358970699 1059 dbSNP
rs6817397 1067 dbSNP
rs551319348 1072 dbSNP
rs901582421 1074 dbSNP
rs1368887557 1084 dbSNP
rs1168184991 1091 dbSNP
rs1440792879 1108 dbSNP
rs1421706497 1110 dbSNP
rs1188263409 1114 dbSNP
rs554249469 1148 dbSNP
rs562308018 1151 dbSNP
rs1114106 1152 dbSNP
rs1486520255 1153 dbSNP
rs1476356425 1164 dbSNP
rs1272117305 1166 dbSNP
rs1180538867 1167 dbSNP
rs147321870 1172 dbSNP
rs1011168402 1179 dbSNP
rs1307622015 1185 dbSNP
rs1245294909 1186 dbSNP
rs1021269681 1192 dbSNP
rs549111562 1193 dbSNP
rs1201119024 1194 dbSNP
rs1285173015 1202 dbSNP
rs74496302 1203 dbSNP
rs1349013546 1204 dbSNP
rs386674104 1207 dbSNP
rs1412265223 1211 dbSNP
rs1430624631 1212 dbSNP
rs1014863372 1218 dbSNP
rs1333025389 1235 dbSNP
rs1413049968 1239 dbSNP
rs192963921 1239 dbSNP
rs759297474 1240 dbSNP
rs1476086289 1245 dbSNP
rs1249320923 1246 dbSNP
rs1181039747 1249 dbSNP
rs1286270031 1252 dbSNP
rs959860369 1260 dbSNP
rs547261052 1264 dbSNP
rs571898795 1283 dbSNP
rs960819909 1298 dbSNP
rs991315257 1299 dbSNP
rs1235648910 1300 dbSNP
rs1327592719 1303 dbSNP
rs1342874896 1305 dbSNP
rs1199952162 1308 dbSNP
rs183104986 1310 dbSNP
rs1375722501 1312 dbSNP
rs1281288241 1317 dbSNP
rs946730657 1323 dbSNP
rs1486813485 1326 dbSNP
rs138691039 1327 dbSNP
rs969904120 1328 dbSNP
rs1462904974 1349 dbSNP
rs924176000 1350 dbSNP
rs187748730 1354 dbSNP
rs1419317999 1358 dbSNP
rs1252303848 1364 dbSNP
rs369246448 1376 dbSNP
rs1376446035 1396 dbSNP
rs1189875242 1397 dbSNP
rs940917158 1400 dbSNP
rs751110306 1407 dbSNP
rs149244234 1409 dbSNP
rs1267901790 1412 dbSNP
rs1171557191 1421 dbSNP
rs1375647292 1424 dbSNP
rs931711330 1430 dbSNP
rs1299511462 1432 dbSNP
rs530367221 1442 dbSNP
rs1305820656 1448 dbSNP
rs1369673296 1459 dbSNP
rs1327961181 1461 dbSNP
rs554623446 1466 dbSNP
rs573048338 1470 dbSNP
rs755631332 1477 dbSNP
rs923522803 1480 dbSNP
rs1454181967 1490 dbSNP
rs1365293777 1500 dbSNP
rs144417737 1506 dbSNP
rs1051046907 1509 dbSNP
rs1304324491 1514 dbSNP
rs1350176967 1518 dbSNP
rs1395193769 1525 dbSNP
rs373361098 1526 dbSNP
rs947177342 1527 dbSNP
rs1248019630 1536 dbSNP
rs1206201070 1540 dbSNP
rs552760801 1541 dbSNP
rs1003239528 1543 dbSNP
rs1042696337 1545 dbSNP
rs1209721992 1546 dbSNP
rs1197988493 1557 dbSNP
rs1348785337 1569 dbSNP
rs192367936 1575 dbSNP
rs958794562 1577 dbSNP
rs990834912 1583 dbSNP
rs998478654 1586 dbSNP
rs1382690173 1587 dbSNP
rs1386901523 1593 dbSNP
rs968126658 1601 dbSNP
rs1197520894 1611 dbSNP
rs1035587915 1616 dbSNP
rs1283500742 1618 dbSNP
rs1455216315 1618 dbSNP
rs1175120431 1619 dbSNP
rs1447175579 1620 dbSNP
rs979389816 1624 dbSNP
rs184537530 1631 dbSNP
rs1430771365 1642 dbSNP
rs923972714 1643 dbSNP
rs1192727846 1654 dbSNP
rs895733604 1659 dbSNP
rs377348282 1660 dbSNP
rs1486195211 1663 dbSNP
rs1282821053 1675 dbSNP
rs1389179119 1678 dbSNP
rs1203249686 1686 dbSNP
rs1023241846 1689 dbSNP
rs1341607602 1693 dbSNP
rs1251915680 1704 dbSNP
rs1228108811 1712 dbSNP
rs1328065412 1717 dbSNP
rs1310331686 1718 dbSNP
rs79868881 1722 dbSNP
rs1355816898 1723 dbSNP
rs1314379874 1729 dbSNP
rs1427365211 1734 dbSNP
rs1395182931 1737 dbSNP
rs969499439 1743 dbSNP
rs1462289927 1751 dbSNP
rs1463990799 1754 dbSNP
rs1367293794 1760 dbSNP
rs976743657 1762 dbSNP
rs1475762415 1769 dbSNP
rs1260026056 1772 dbSNP
rs1020429046 1774 dbSNP
rs752337824 1777 dbSNP
rs923431835 1781 dbSNP
rs932156627 1782 dbSNP
rs1016367487 1784 dbSNP
rs1388445914 1785 dbSNP
rs968877315 1788 dbSNP
rs2172144 1793 dbSNP
rs941792880 1796 dbSNP
rs1232576890 1801 dbSNP
rs548035984 1809 dbSNP
rs1138684 1810 dbSNP
rs763941419 1811 dbSNP
rs923519855 1814 dbSNP
rs1002756574 1820 dbSNP
rs1036029727 1820 dbSNP
rs1329103972 1830 dbSNP
rs894284691 1837 dbSNP
rs1164892115 1838 dbSNP
rs75897686 1842 dbSNP
rs542671603 1845 dbSNP
rs767208348 1846 dbSNP
rs910745131 1848 dbSNP
rs1373205024 1852 dbSNP
rs1364662305 1853 dbSNP
rs777290303 1855 dbSNP
rs527282656 1857 dbSNP
rs1012684706 1863 dbSNP
rs76836376 1872 dbSNP
rs560960739 1873 dbSNP
rs1297125018 1879 dbSNP
rs947564683 1880 dbSNP
rs968097782 1887 dbSNP
rs189513151 1894 dbSNP
rs1030963394 1903 dbSNP
rs1308372409 1904 dbSNP
rs1279813372 1913 dbSNP
rs902957234 1919 dbSNP
rs1328873831 1920 dbSNP
rs934298213 1921 dbSNP
rs1397255978 1922 dbSNP
rs1057227553 1925 dbSNP
rs895713549 1927 dbSNP
rs1400563067 1928 dbSNP
rs1013290756 1929 dbSNP
rs547173356 1945 dbSNP
rs1214819165 1958 dbSNP
rs1386098400 1959 dbSNP
rs1255445946 1961 dbSNP
rs1469373378 1962 dbSNP
rs571750778 1964 dbSNP
rs1186184504 1968 dbSNP
rs375276064 1971 dbSNP
rs1394558943 1973 dbSNP
rs1005393634 1975 dbSNP
rs1016334500 1983 dbSNP
rs1455631577 1987 dbSNP
rs962134896 1989 dbSNP
rs909417373 1990 dbSNP
rs1172121144 2007 dbSNP
rs1446263412 2013 dbSNP
rs1284635687 2014 dbSNP
rs1206562070 2015 dbSNP
rs1342357538 2017 dbSNP
rs972077712 2021 dbSNP
rs1565532 2023 dbSNP
rs1036527035 2025 dbSNP
rs1296099291 2030 dbSNP
rs756538344 2032 dbSNP
rs954976418 2033 dbSNP
rs375906983 2035 dbSNP
rs1056822200 2038 dbSNP
rs1165492996 2050 dbSNP
rs894370080 2058 dbSNP
rs1174492738 2060 dbSNP
rs570434741 2065 dbSNP
rs569563924 2066 dbSNP
rs1475021358 2072 dbSNP
rs536243582 2078 dbSNP
rs947533529 2080 dbSNP
rs1320023047 2085 dbSNP
rs1362896556 2090 dbSNP
rs539244668 2109 dbSNP
rs1031519945 2114 dbSNP
rs956710083 2117 dbSNP
rs997908980 2121 dbSNP
rs1446364754 2124 dbSNP
rs1355191480 2125 dbSNP
rs1313770023 2126 dbSNP
rs1416803615 2134 dbSNP
rs757119869 2136 dbSNP
rs1030363045 2139 dbSNP
rs1310885253 2150 dbSNP
rs192065006 2154 dbSNP
rs924349521 2158 dbSNP
rs934432322 2160 dbSNP
rs1169577483 2168 dbSNP
rs1234298517 2168 dbSNP
rs1056794804 2177 dbSNP
rs745933212 2185 dbSNP
rs1256519048 2188 dbSNP
rs1188250080 2189 dbSNP
rs1486408970 2190 dbSNP
rs1327777472 2192 dbSNP
rs1206244954 2194 dbSNP
rs948423622 2200 dbSNP
rs566587757 2207 dbSNP
rs1203276694 2218 dbSNP
rs552462164 2220 dbSNP
rs534034579 2223 dbSNP
rs1231974901 2227 dbSNP
rs1187843428 2229 dbSNP
rs1294249809 2231 dbSNP
rs1416862827 2243 dbSNP
rs963549832 2246 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 60558.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_021927 | 3UTR | UUUUUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_021927 | 3UTR | UUUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCAAUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_021927 | 3UTR | UUUUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_021927 | 3UTR | UUUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_021927 | 3UTR | UUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_021927 | 3UTR | UUUUAUUUAUUUUUUGAGACAGAGUCUUGCCCUGUCGCCCAGGCUGGAGUGCAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000281543.5 | 3UTR | AGAGUCUUGCCCUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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