pre-miRNA Information
pre-miRNA hsa-mir-4316   
Genomic Coordinates chr17: 77396984 - 77397054
Description Homo sapiens miR-4316 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4316
Sequence 11| GGUGAGGCUAGCUGGUG |27
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs989002279 5 dbSNP
rs957742923 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NUP155   
Synonyms ATFB15, N155
Description nucleoporin 155
Transcript NM_004298   
Other Transcripts NM_153485   
Expression
Putative miRNA Targets on NUP155
3'UTR of NUP155
(miRNA target sites are highlighted)
>NUP155|NM_004298|3'UTR
   1 TTACTGTGATATACTTTCATCCGTTTTATGATCTGTAAAATAAAAACTCAGCTGGGTCCAGATATCAGGTGTTCTAAATC
  81 TAAGAATGTAAGAACAATCTTAATAGAAATATGTTTTTAATAAGTGGCTAATATCTACAAATAGTACCTTTGCTAAATGA
 161 ATTCTTTTTTATGACTATTTTGTTTTTTAGTAATTGGGTGAAAAAACAACTGAAATGAGATTATTTATTATTTTAACATA
 241 AGGATTAAAAAAATTTAGAAACTCTTAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guGGUCGAUCGGAGUgg 5'
            :||| |: :|| |  
Target 5' taTCAGGTGTTCTAAat 3'
63 - 79 59.00 -7.96
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30517679 50 COSMIC
COSN28194910 104 COSMIC
COSN16379236 244 COSMIC
COSN6585811 357 COSMIC
COSN4849667 1229 COSMIC
COSN23753500 1646 COSMIC
COSN26843033 1735 COSMIC
COSN6295858 2524 COSMIC
COSN7940260 2531 COSMIC
COSN20851092 2558 COSMIC
COSN20150029 2682 COSMIC
COSN22664357 3218 COSMIC
COSN27954860 3316 COSMIC
COSN15912472 3622 COSMIC
COSN26125987 3724 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775744350 1 dbSNP
rs770160087 3 dbSNP
rs746190158 4 dbSNP
rs781528629 5 dbSNP
rs771046854 9 dbSNP
rs1309562453 11 dbSNP
rs375816854 12 dbSNP
rs1209846204 14 dbSNP
rs948983466 18 dbSNP
rs216391 19 dbSNP
rs758425044 22 dbSNP
rs186382138 23 dbSNP
rs552800632 27 dbSNP
rs956239428 34 dbSNP
rs754840105 35 dbSNP
rs181002881 41 dbSNP
rs766111040 51 dbSNP
rs573599775 54 dbSNP
rs189265257 61 dbSNP
rs547170866 65 dbSNP
rs1043989342 68 dbSNP
rs1222297955 69 dbSNP
rs1248374822 73 dbSNP
rs1441457789 75 dbSNP
rs1340818123 79 dbSNP
rs536578999 82 dbSNP
rs932243862 84 dbSNP
rs1335975724 91 dbSNP
rs900639546 95 dbSNP
rs1373815200 97 dbSNP
rs769544033 103 dbSNP
rs1040564992 104 dbSNP
rs567773493 105 dbSNP
rs1406317175 111 dbSNP
rs756772871 120 dbSNP
rs569234447 123 dbSNP
rs550730468 127 dbSNP
rs1420311052 147 dbSNP
rs907979960 154 dbSNP
rs1027981552 162 dbSNP
rs1308735441 166 dbSNP
rs1352387230 168 dbSNP
rs1408272947 171 dbSNP
rs1287954895 179 dbSNP
rs1410344293 179 dbSNP
rs1349755222 182 dbSNP
rs1228690841 189 dbSNP
rs1291680432 200 dbSNP
rs1319892486 207 dbSNP
rs538871345 207 dbSNP
rs1157326867 211 dbSNP
rs747580368 227 dbSNP
rs1470118068 229 dbSNP
rs1238380347 230 dbSNP
rs571668984 231 dbSNP
rs1483733180 234 dbSNP
rs878865727 235 dbSNP
rs983837313 247 dbSNP
rs1231943003 248 dbSNP
rs1472884326 251 dbSNP
rs1183995005 253 dbSNP
rs199686529 254 dbSNP
rs746234971 254 dbSNP
rs965376992 254 dbSNP
rs1169746094 256 dbSNP
rs1372558606 259 dbSNP
rs780786907 260 dbSNP
rs1307431172 263 dbSNP
rs755494785 263 dbSNP
rs1341305419 273 dbSNP
rs1450421593 277 dbSNP
rs1484910537 281 dbSNP
rs546826801 291 dbSNP
rs979978876 296 dbSNP
rs1318182660 297 dbSNP
rs969983527 298 dbSNP
rs1442661880 303 dbSNP
rs1024532204 309 dbSNP
rs1236125649 311 dbSNP
rs992704857 327 dbSNP
rs955965064 335 dbSNP
rs886966402 343 dbSNP
rs1048237994 344 dbSNP
rs1392577304 351 dbSNP
rs571297841 354 dbSNP
rs994949092 357 dbSNP
rs1031460239 358 dbSNP
rs370795771 362 dbSNP
rs1231164115 366 dbSNP
rs1416432146 371 dbSNP
rs999810622 372 dbSNP
rs1332401533 373 dbSNP
rs184309369 377 dbSNP
rs1312496992 379 dbSNP
rs780502022 385 dbSNP
rs1297987592 388 dbSNP
rs948750595 407 dbSNP
rs1367305900 409 dbSNP
rs867232152 414 dbSNP
rs375887780 415 dbSNP
rs146133660 421 dbSNP
rs1345068428 422 dbSNP
rs1201886793 424 dbSNP
rs996361079 427 dbSNP
rs900775440 430 dbSNP
rs934890735 431 dbSNP
rs1209750429 443 dbSNP
rs1250248799 444 dbSNP
rs1040929031 445 dbSNP
rs944915048 447 dbSNP
rs1378323575 452 dbSNP
rs924834044 453 dbSNP
rs1479047422 456 dbSNP
rs775315369 457 dbSNP
rs886518521 457 dbSNP
rs978892785 459 dbSNP
rs1428876707 467 dbSNP
rs1457928807 472 dbSNP
rs758832901 477 dbSNP
rs1415100956 481 dbSNP
rs1167759341 483 dbSNP
rs1390536284 487 dbSNP
rs1380497258 489 dbSNP
rs77089381 492 dbSNP
rs1047840281 493 dbSNP
rs75734685 493 dbSNP
rs930719689 498 dbSNP
rs920573361 499 dbSNP
rs1272502726 501 dbSNP
rs547073168 502 dbSNP
rs921018035 509 dbSNP
rs868395211 510 dbSNP
rs1205128514 511 dbSNP
rs530797983 513 dbSNP
rs765350810 514 dbSNP
rs917198765 516 dbSNP
rs1268207568 518 dbSNP
rs993068349 521 dbSNP
rs867366533 531 dbSNP
rs1240029062 533 dbSNP
rs1019676333 534 dbSNP
rs924448071 544 dbSNP
rs1391364720 547 dbSNP
rs982741998 549 dbSNP
rs216390 550 dbSNP
rs545146244 551 dbSNP
rs1410099944 555 dbSNP
rs1289831380 558 dbSNP
rs139421965 563 dbSNP
rs904987420 565 dbSNP
rs965311828 567 dbSNP
rs764254558 570 dbSNP
rs1208555418 572 dbSNP
rs759408925 573 dbSNP
rs1215353578 581 dbSNP
rs774274124 582 dbSNP
rs1023063268 586 dbSNP
rs1184678836 589 dbSNP
rs1249903086 593 dbSNP
rs562112820 595 dbSNP
rs895832946 596 dbSNP
rs1368783013 599 dbSNP
rs766369725 604 dbSNP
rs762723531 605 dbSNP
rs1009469378 609 dbSNP
rs1350547992 615 dbSNP
rs1429813393 616 dbSNP
rs1309257775 618 dbSNP
rs181314450 622 dbSNP
rs1370731836 625 dbSNP
rs1460381031 626 dbSNP
rs886573201 626 dbSNP
rs1057438666 632 dbSNP
rs1394161472 633 dbSNP
rs1048382027 638 dbSNP
rs1291671318 641 dbSNP
rs536326821 651 dbSNP
rs1430682057 655 dbSNP
rs559393897 655 dbSNP
rs1416877068 660 dbSNP
rs540806914 664 dbSNP
rs994896856 684 dbSNP
rs1480440879 688 dbSNP
rs1201229799 700 dbSNP
rs1256649308 704 dbSNP
rs899278934 705 dbSNP
rs1181740930 706 dbSNP
rs903444473 711 dbSNP
rs573564149 714 dbSNP
rs1254400094 728 dbSNP
rs28406247 739 dbSNP
rs28676671 740 dbSNP
rs947567910 742 dbSNP
rs921406152 744 dbSNP
rs975210460 746 dbSNP
rs771955659 748 dbSNP
rs943768704 750 dbSNP
rs1057014601 756 dbSNP
rs1258666379 757 dbSNP
rs934575761 761 dbSNP
rs924445161 771 dbSNP
rs1271069559 772 dbSNP
rs554917781 776 dbSNP
rs567380571 782 dbSNP
rs1450927031 783 dbSNP
rs188362554 786 dbSNP
rs150892056 790 dbSNP
rs1231191371 791 dbSNP
rs1293589159 796 dbSNP
rs1306964935 797 dbSNP
rs1381669042 798 dbSNP
rs951366887 800 dbSNP
rs1026903096 820 dbSNP
rs1438838472 823 dbSNP
rs1370839452 828 dbSNP
rs1242263709 833 dbSNP
rs973952425 834 dbSNP
rs141632936 839 dbSNP
rs965104804 846 dbSNP
rs1463790750 848 dbSNP
rs1353188888 852 dbSNP
rs372852017 858 dbSNP
rs1023448885 860 dbSNP
rs1169293720 861 dbSNP
rs1427395091 866 dbSNP
rs1013032238 886 dbSNP
rs1009129929 887 dbSNP
rs1396334290 895 dbSNP
rs1467862806 898 dbSNP
rs951050046 904 dbSNP
rs895880786 911 dbSNP
rs1035733745 917 dbSNP
rs995028488 920 dbSNP
rs999265080 921 dbSNP
rs1178889025 935 dbSNP
rs773100048 941 dbSNP
rs1479534992 942 dbSNP
rs1219903473 950 dbSNP
rs1232151227 954 dbSNP
rs1204054445 961 dbSNP
rs1044533754 966 dbSNP
rs1321714330 970 dbSNP
rs1223083679 971 dbSNP
rs903160104 973 dbSNP
rs1282760952 989 dbSNP
rs1013426132 993 dbSNP
rs895777094 995 dbSNP
rs1043305100 996 dbSNP
rs769291307 998 dbSNP
rs539220941 1003 dbSNP
rs1268778247 1009 dbSNP
rs528697428 1011 dbSNP
rs1459148861 1015 dbSNP
rs778903367 1015 dbSNP
rs924551360 1015 dbSNP
rs1157308118 1016 dbSNP
rs747860188 1020 dbSNP
rs1347249108 1037 dbSNP
rs1345122692 1042 dbSNP
rs900036017 1043 dbSNP
rs571789317 1044 dbSNP
rs547056297 1045 dbSNP
rs548878357 1049 dbSNP
rs1371605076 1050 dbSNP
rs775948706 1053 dbSNP
rs1225261642 1055 dbSNP
rs1298007508 1069 dbSNP
rs943834730 1077 dbSNP
rs768288570 1078 dbSNP
rs1376846327 1082 dbSNP
rs912295070 1082 dbSNP
rs1171382678 1083 dbSNP
rs746587394 1101 dbSNP
rs10472286 1102 dbSNP
rs912203366 1110 dbSNP
rs1380453995 1112 dbSNP
rs919562928 1116 dbSNP
rs974003343 1121 dbSNP
rs201576477 1139 dbSNP
rs1198315612 1145 dbSNP
rs969274143 1148 dbSNP
rs950979589 1149 dbSNP
rs759027954 1152 dbSNP
rs1407656972 1153 dbSNP
rs746184001 1156 dbSNP
rs1167520012 1158 dbSNP
rs147991215 1166 dbSNP
rs963505533 1181 dbSNP
rs1486535235 1182 dbSNP
rs1352593563 1185 dbSNP
rs1440226181 1186 dbSNP
rs960532354 1189 dbSNP
rs1012979586 1202 dbSNP
rs895901760 1204 dbSNP
rs1035682002 1212 dbSNP
rs1036192152 1218 dbSNP
rs999284728 1224 dbSNP
rs1274679111 1227 dbSNP
rs143443033 1229 dbSNP
rs1042986483 1237 dbSNP
rs1473322040 1239 dbSNP
rs1485377224 1246 dbSNP
rs1185748336 1248 dbSNP
rs947311487 1254 dbSNP
rs899635086 1259 dbSNP
rs1169324618 1263 dbSNP
rs1372457012 1269 dbSNP
rs967372229 1275 dbSNP
rs1021564399 1280 dbSNP
rs1261436726 1283 dbSNP
rs1328426914 1290 dbSNP
rs1353771047 1292 dbSNP
rs1448503502 1293 dbSNP
rs563526043 1295 dbSNP
rs1338386242 1296 dbSNP
rs754100875 1300 dbSNP
rs551431145 1301 dbSNP
rs1241767938 1303 dbSNP
rs1293060219 1308 dbSNP
rs1011814080 1320 dbSNP
rs370025663 1322 dbSNP
rs537211498 1325 dbSNP
rs1340823287 1328 dbSNP
rs900085086 1329 dbSNP
rs1039910680 1331 dbSNP
rs764011551 1342 dbSNP
rs1206001863 1345 dbSNP
rs547351548 1345 dbSNP
rs1241627730 1358 dbSNP
rs912325334 1359 dbSNP
rs1189737791 1363 dbSNP
rs982467491 1364 dbSNP
rs1474461672 1372 dbSNP
rs929667132 1385 dbSNP
rs1234223887 1386 dbSNP
rs1008812174 1387 dbSNP
rs943220282 1390 dbSNP
rs1357768529 1395 dbSNP
rs1426145391 1395 dbSNP
rs1471057938 1395 dbSNP
rs375258440 1396 dbSNP
rs1403606430 1407 dbSNP
rs1491474763 1408 dbSNP
rs1321139119 1409 dbSNP
rs1491359200 1409 dbSNP
rs184514072 1409 dbSNP
rs963642129 1409 dbSNP
rs1224938879 1410 dbSNP
rs1261701795 1411 dbSNP
rs1323265562 1416 dbSNP
rs1209963009 1418 dbSNP
rs1385027378 1419 dbSNP
rs1445715054 1419 dbSNP
rs1290071965 1420 dbSNP
rs76788126 1421 dbSNP
rs1192605121 1422 dbSNP
rs1247319515 1422 dbSNP
rs1318804620 1422 dbSNP
rs1387087536 1422 dbSNP
rs35405189 1422 dbSNP
rs62354992 1423 dbSNP
rs1023110638 1424 dbSNP
rs1317077086 1429 dbSNP
rs1363095202 1431 dbSNP
rs1406458829 1433 dbSNP
rs1280956239 1435 dbSNP
rs1344415733 1436 dbSNP
rs1229404270 1438 dbSNP
rs541245022 1444 dbSNP
rs1047264352 1461 dbSNP
rs929687356 1467 dbSNP
rs919614938 1468 dbSNP
rs1415471960 1473 dbSNP
rs112188930 1474 dbSNP
rs947992102 1480 dbSNP
rs916487406 1487 dbSNP
rs1475026898 1493 dbSNP
rs561459486 1497 dbSNP
rs1206924333 1510 dbSNP
rs1365302015 1516 dbSNP
rs542970460 1519 dbSNP
rs1468569783 1520 dbSNP
rs960839014 1530 dbSNP
rs1365718379 1531 dbSNP
rs923776737 1531 dbSNP
rs977501376 1532 dbSNP
rs903155180 1535 dbSNP
rs967424337 1541 dbSNP
rs1309673307 1545 dbSNP
rs1334318757 1549 dbSNP
rs1021612921 1551 dbSNP
rs1239045318 1553 dbSNP
rs752831780 1554 dbSNP
rs192068015 1555 dbSNP
rs1291880394 1562 dbSNP
rs766281864 1569 dbSNP
rs1233087246 1580 dbSNP
rs540082910 1589 dbSNP
rs1018947868 1592 dbSNP
rs1483532774 1602 dbSNP
rs1197739330 1605 dbSNP
rs1008451187 1619 dbSNP
rs1252483107 1621 dbSNP
rs1417065054 1632 dbSNP
rs1180750433 1638 dbSNP
rs1132634 1646 dbSNP
rs557623774 1651 dbSNP
rs545414049 1652 dbSNP
rs578108581 1653 dbSNP
rs577757616 1654 dbSNP
rs1299522247 1665 dbSNP
rs1379955569 1668 dbSNP
rs1391193638 1668 dbSNP
rs1394859871 1668 dbSNP
rs1047218759 1676 dbSNP
rs1244392768 1679 dbSNP
rs993945419 1681 dbSNP
rs1326482889 1682 dbSNP
rs553262610 1684 dbSNP
rs535235101 1685 dbSNP
rs1038088518 1686 dbSNP
rs551657003 1693 dbSNP
rs1462992234 1697 dbSNP
rs1480390492 1698 dbSNP
rs567720950 1699 dbSNP
rs1195043441 1704 dbSNP
rs369314740 1706 dbSNP
rs1163893572 1714 dbSNP
rs947710245 1716 dbSNP
rs894782020 1718 dbSNP
rs942245808 1720 dbSNP
rs1171835312 1722 dbSNP
rs916188571 1725 dbSNP
rs1461127247 1727 dbSNP
rs1056805516 1728 dbSNP
rs1408714314 1751 dbSNP
rs1373803286 1752 dbSNP
rs375809972 1754 dbSNP
rs1451183431 1759 dbSNP
rs991669446 1763 dbSNP
rs1426813043 1766 dbSNP
rs1336634521 1778 dbSNP
rs1363198821 1787 dbSNP
rs1383998808 1789 dbSNP
rs1293476198 1790 dbSNP
rs960517077 1792 dbSNP
rs373845997 1793 dbSNP
rs939267220 1795 dbSNP
rs555900039 1796 dbSNP
rs1261205757 1797 dbSNP
rs111275101 1807 dbSNP
rs967452217 1814 dbSNP
rs1236852918 1819 dbSNP
rs1486117205 1822 dbSNP
rs946172545 1824 dbSNP
rs1021570642 1826 dbSNP
rs762908411 1833 dbSNP
rs185476369 1834 dbSNP
rs564457491 1841 dbSNP
rs1340502234 1843 dbSNP
rs964401777 1850 dbSNP
rs1468578919 1863 dbSNP
rs551636106 1867 dbSNP
rs1018252010 1877 dbSNP
rs1018644706 1878 dbSNP
rs539083042 1879 dbSNP
rs1325325646 1881 dbSNP
rs1361323351 1883 dbSNP
rs955636158 1888 dbSNP
rs1405851508 1889 dbSNP
rs1025850973 1891 dbSNP
rs1285421077 1895 dbSNP
rs1343814189 1896 dbSNP
rs890915237 1902 dbSNP
rs994341676 1904 dbSNP
rs898631807 1907 dbSNP
rs1217819096 1908 dbSNP
rs565982535 1911 dbSNP
rs768219 1914 dbSNP
rs138714820 1926 dbSNP
rs894830222 1930 dbSNP
rs1056121565 1937 dbSNP
rs1222510193 1943 dbSNP
rs774430405 1955 dbSNP
rs1479228327 1960 dbSNP
rs529060611 1968 dbSNP
rs898277288 1972 dbSNP
rs1398454071 1976 dbSNP
rs1421441155 1977 dbSNP
rs1157551601 1983 dbSNP
rs902423467 1984 dbSNP
rs765091894 1985 dbSNP
rs1389602689 1986 dbSNP
rs1174283937 1990 dbSNP
rs1274066335 1992 dbSNP
rs1455648377 1992 dbSNP
rs1373778003 1996 dbSNP
rs1225447300 2008 dbSNP
rs1304801936 2010 dbSNP
rs544670891 2011 dbSNP
rs1251604027 2014 dbSNP
rs561446547 2015 dbSNP
rs543154177 2021 dbSNP
rs531192291 2027 dbSNP
rs916155231 2027 dbSNP
rs946558414 2028 dbSNP
rs915045471 2034 dbSNP
rs1233887623 2041 dbSNP
rs1438738147 2049 dbSNP
rs1481816385 2052 dbSNP
rs1175794348 2058 dbSNP
rs1380235321 2067 dbSNP
rs1253162897 2068 dbSNP
rs1445728355 2073 dbSNP
rs575565719 2075 dbSNP
rs977589869 2081 dbSNP
rs1424334547 2082 dbSNP
rs1338297393 2096 dbSNP
rs942782098 2114 dbSNP
rs1280628695 2124 dbSNP
rs1356438855 2125 dbSNP
rs967419625 2126 dbSNP
rs1296197527 2143 dbSNP
rs911241026 2146 dbSNP
rs914700216 2152 dbSNP
rs986810596 2153 dbSNP
rs1356639310 2156 dbSNP
rs1227443015 2164 dbSNP
rs1273293232 2166 dbSNP
rs145988511 2167 dbSNP
rs1025910074 2169 dbSNP
rs1018279908 2173 dbSNP
rs1185957363 2174 dbSNP
rs142143537 2178 dbSNP
rs1472514652 2179 dbSNP
rs972950986 2183 dbSNP
rs962890004 2185 dbSNP
rs1326656871 2193 dbSNP
rs1390640349 2196 dbSNP
rs193217751 2198 dbSNP
rs1174496612 2203 dbSNP
rs768220 2213 dbSNP
rs768478431 2216 dbSNP
rs1380417435 2220 dbSNP
rs541591806 2227 dbSNP
rs1025886137 2231 dbSNP
rs1270235988 2238 dbSNP
rs1363669313 2248 dbSNP
rs1172480881 2252 dbSNP
rs1257892481 2264 dbSNP
rs1324697212 2272 dbSNP
rs1205903306 2293 dbSNP
rs746491518 2303 dbSNP
rs775176237 2311 dbSNP
rs2366276 2312 dbSNP
rs1194017842 2320 dbSNP
rs55658417 2332 dbSNP
rs1180045499 2333 dbSNP
rs1482941588 2340 dbSNP
rs1257700235 2341 dbSNP
rs1212661208 2343 dbSNP
rs1470136395 2345 dbSNP
rs898244649 2348 dbSNP
rs1279055331 2349 dbSNP
rs1224246571 2350 dbSNP
rs1016725909 2352 dbSNP
rs1352709024 2352 dbSNP
rs1277190763 2354 dbSNP
rs574327906 2356 dbSNP
rs1225768071 2361 dbSNP
rs894763093 2368 dbSNP
rs769303621 2381 dbSNP
rs1056149653 2397 dbSNP
rs773525014 2403 dbSNP
rs938901382 2414 dbSNP
rs555885618 2417 dbSNP
rs907478080 2433 dbSNP
rs1041868647 2438 dbSNP
rs772671292 2439 dbSNP
rs537574676 2440 dbSNP
rs1313694512 2442 dbSNP
rs1416907775 2447 dbSNP
rs1373675489 2448 dbSNP
rs990155469 2451 dbSNP
rs942818095 2452 dbSNP
rs911185273 2461 dbSNP
rs1417320985 2469 dbSNP
rs570009126 2479 dbSNP
rs986848599 2480 dbSNP
rs1322031165 2498 dbSNP
rs75561380 2504 dbSNP
rs1387702579 2508 dbSNP
rs536160151 2513 dbSNP
rs539831322 2515 dbSNP
rs1349079921 2523 dbSNP
rs972552211 2536 dbSNP
rs1472467590 2537 dbSNP
rs1490916978 2539 dbSNP
rs187618897 2540 dbSNP
rs1265073143 2541 dbSNP
rs1450832220 2552 dbSNP
rs1182168761 2553 dbSNP
rs1365493112 2557 dbSNP
rs1189600940 2565 dbSNP
rs1437693987 2568 dbSNP
rs1474045945 2569 dbSNP
rs1385277249 2570 dbSNP
rs1426233645 2577 dbSNP
rs1291418431 2580 dbSNP
rs547718536 2588 dbSNP
rs1389496656 2592 dbSNP
rs1392338906 2592 dbSNP
rs182605810 2604 dbSNP
rs190419281 2607 dbSNP
rs962502065 2633 dbSNP
rs1448223654 2640 dbSNP
rs1282054347 2641 dbSNP
rs1315874708 2649 dbSNP
rs1016778927 2655 dbSNP
rs1011977335 2664 dbSNP
rs894906284 2666 dbSNP
rs1035082403 2668 dbSNP
rs187124265 2676 dbSNP
rs1294945057 2680 dbSNP
rs1456418447 2684 dbSNP
rs1177926777 2693 dbSNP
rs1243283383 2699 dbSNP
rs1445943290 2701 dbSNP
rs1162009320 2706 dbSNP
rs907442509 2711 dbSNP
rs1231259821 2713 dbSNP
rs1353742603 2717 dbSNP
rs1041919432 2718 dbSNP
rs946305442 2721 dbSNP
rs1328347294 2723 dbSNP
rs893283730 2726 dbSNP
rs549444625 2728 dbSNP
rs1312029522 2730 dbSNP
rs879276852 2732 dbSNP
rs1054565682 2736 dbSNP
rs942766707 2741 dbSNP
rs911333094 2745 dbSNP
rs748367076 2756 dbSNP
rs987204029 2756 dbSNP
rs1462566757 2761 dbSNP
rs925338259 2768 dbSNP
rs561294191 2775 dbSNP
rs549687366 2783 dbSNP
rs779092475 2784 dbSNP
rs1465433870 2793 dbSNP
rs1167504791 2794 dbSNP
rs757647148 2795 dbSNP
rs1460228791 2799 dbSNP
rs551844898 2801 dbSNP
rs527284000 2811 dbSNP
rs1464961152 2839 dbSNP
rs559791856 2845 dbSNP
rs1385754890 2848 dbSNP
rs541784549 2851 dbSNP
rs1276559485 2855 dbSNP
rs1340042487 2857 dbSNP
rs972604345 2868 dbSNP
rs1283633102 2869 dbSNP
rs574266392 2874 dbSNP
rs1207899780 2875 dbSNP
rs1254977647 2879 dbSNP
rs1239907658 2883 dbSNP
rs1485903582 2885 dbSNP
rs1206312622 2886 dbSNP
rs1260626291 2889 dbSNP
rs573627772 2899 dbSNP
rs990696010 2912 dbSNP
rs1431863153 2913 dbSNP
rs1432013672 2916 dbSNP
rs959383442 2926 dbSNP
rs1364819857 2929 dbSNP
rs544050317 2936 dbSNP
rs1003714922 2937 dbSNP
rs11750291 2953 dbSNP
rs1320895519 2960 dbSNP
rs10070875 2961 dbSNP
rs1217466518 2968 dbSNP
rs183151400 2970 dbSNP
rs1010415703 2974 dbSNP
rs893419586 2977 dbSNP
rs78406874 2979 dbSNP
rs1222763391 2983 dbSNP
rs1248876118 2985 dbSNP
rs1487717488 2986 dbSNP
rs1364147460 2987 dbSNP
rs1409394544 2989 dbSNP
rs113574938 2991 dbSNP
rs1165694255 2991 dbSNP
rs1302751739 2991 dbSNP
rs57989646 2991 dbSNP
rs1268534568 2993 dbSNP
rs1054532937 3003 dbSNP
rs1372304955 3018 dbSNP
rs539449899 3019 dbSNP
rs1007097502 3021 dbSNP
rs1306536117 3024 dbSNP
rs1439147389 3027 dbSNP
rs889860485 3031 dbSNP
rs1291584084 3032 dbSNP
rs1319510481 3041 dbSNP
rs865943047 3044 dbSNP
rs1051153375 3046 dbSNP
rs1170678459 3048 dbSNP
rs1233794881 3053 dbSNP
rs572446963 3055 dbSNP
rs1416984777 3058 dbSNP
rs1167362657 3059 dbSNP
rs1237710938 3061 dbSNP
rs530234333 3062 dbSNP
rs1183610770 3065 dbSNP
rs1404960177 3066 dbSNP
rs140491224 3067 dbSNP
rs1191744722 3069 dbSNP
rs1488028284 3073 dbSNP
rs186860783 3078 dbSNP
rs1452770983 3079 dbSNP
rs934070423 3079 dbSNP
rs1037047199 3082 dbSNP
rs1309446929 3087 dbSNP
rs941244275 3099 dbSNP
rs909842452 3100 dbSNP
rs1462115485 3109 dbSNP
rs182187513 3110 dbSNP
rs1348770849 3111 dbSNP
rs1472628992 3111 dbSNP
rs1187316376 3113 dbSNP
rs1306249490 3117 dbSNP
rs1218029408 3118 dbSNP
rs1425976842 3118 dbSNP
rs1367302830 3119 dbSNP
rs1303278690 3121 dbSNP
rs372473048 3121 dbSNP
rs1470234824 3123 dbSNP
rs1299059204 3124 dbSNP
rs549532264 3126 dbSNP
rs371560842 3129 dbSNP
rs371786888 3129 dbSNP
rs961231642 3130 dbSNP
rs1307030684 3131 dbSNP
rs1422909489 3131 dbSNP
rs1298235526 3132 dbSNP
rs1397711411 3132 dbSNP
rs1434795633 3133 dbSNP
rs1396421743 3134 dbSNP
rs1171660544 3136 dbSNP
rs959204425 3146 dbSNP
rs1432564739 3148 dbSNP
rs1408673644 3152 dbSNP
rs1224427809 3153 dbSNP
rs1288227634 3153 dbSNP
rs1344876428 3153 dbSNP
rs1351835657 3153 dbSNP
rs1491101126 3153 dbSNP
rs865850172 3153 dbSNP
rs1491573572 3154 dbSNP
rs868738176 3154 dbSNP
rs1157687464 3155 dbSNP
rs1417539476 3155 dbSNP
rs763086644 3155 dbSNP
rs113364318 3159 dbSNP
rs1321933945 3161 dbSNP
rs1331083592 3161 dbSNP
rs1388918803 3161 dbSNP
rs1448128555 3163 dbSNP
rs927792019 3166 dbSNP
rs1351584702 3170 dbSNP
rs1479545790 3175 dbSNP
rs1292792011 3182 dbSNP
rs981861087 3184 dbSNP
rs1211444048 3186 dbSNP
rs1249812735 3187 dbSNP
rs1204773909 3189 dbSNP
rs537658325 3190 dbSNP
rs966446622 3192 dbSNP
rs1437279746 3199 dbSNP
rs1177422682 3212 dbSNP
rs1368706652 3213 dbSNP
rs1459101675 3215 dbSNP
rs1161869461 3233 dbSNP
rs1020566098 3235 dbSNP
rs1282608861 3237 dbSNP
rs1010553042 3241 dbSNP
rs1446176984 3246 dbSNP
rs1231198095 3248 dbSNP
rs1312071852 3258 dbSNP
rs1282266927 3261 dbSNP
rs1355390481 3262 dbSNP
rs1259950503 3268 dbSNP
rs192125665 3269 dbSNP
rs1456347163 3281 dbSNP
rs957614973 3296 dbSNP
rs1256204536 3297 dbSNP
rs1425256429 3298 dbSNP
rs56044954 3300 dbSNP
rs1033256793 3303 dbSNP
rs185968587 3306 dbSNP
rs1173228042 3307 dbSNP
rs1007560963 3308 dbSNP
rs1465546651 3317 dbSNP
rs889920813 3321 dbSNP
rs1394301873 3334 dbSNP
rs1312280588 3335 dbSNP
rs1287309858 3341 dbSNP
rs1219032300 3342 dbSNP
rs1279833644 3347 dbSNP
rs180897690 3353 dbSNP
rs998249912 3354 dbSNP
rs1256137019 3357 dbSNP
rs1300529369 3358 dbSNP
rs777959320 3365 dbSNP
rs1198162914 3366 dbSNP
rs1255087844 3377 dbSNP
rs1465130956 3379 dbSNP
rs1345659035 3384 dbSNP
rs1161212881 3392 dbSNP
rs1417063917 3405 dbSNP
rs897270901 3408 dbSNP
rs1411019268 3411 dbSNP
rs140388294 3413 dbSNP
rs1037014237 3417 dbSNP
rs1475633842 3428 dbSNP
rs1477821142 3429 dbSNP
rs1177437037 3430 dbSNP
rs1379823926 3436 dbSNP
rs1464630468 3446 dbSNP
rs188717549 3449 dbSNP
rs1198741782 3455 dbSNP
rs1361457800 3456 dbSNP
rs1055014374 3458 dbSNP
rs142232930 3458 dbSNP
rs1261819814 3462 dbSNP
rs1381375716 3463 dbSNP
rs141531535 3466 dbSNP
rs10473043 3467 dbSNP
rs1206547013 3468 dbSNP
rs982383256 3469 dbSNP
rs1260512334 3471 dbSNP
rs1488177748 3472 dbSNP
rs966415657 3476 dbSNP
rs1270137407 3480 dbSNP
rs1267940202 3482 dbSNP
rs151260734 3485 dbSNP
rs989096751 3486 dbSNP
rs957667138 3487 dbSNP
rs1356924177 3488 dbSNP
rs1310158633 3491 dbSNP
rs1017690237 3492 dbSNP
rs1429794887 3498 dbSNP
rs1293854305 3500 dbSNP
rs1369688784 3513 dbSNP
rs1384981000 3526 dbSNP
rs1302126714 3539 dbSNP
rs1377005258 3545 dbSNP
rs1394882963 3552 dbSNP
rs530963480 3555 dbSNP
rs1241615098 3556 dbSNP
rs752733748 3557 dbSNP
rs1290531146 3559 dbSNP
rs143565183 3560 dbSNP
rs1222826169 3564 dbSNP
rs1267584057 3565 dbSNP
rs767605076 3571 dbSNP
rs1165314938 3575 dbSNP
rs1239249890 3577 dbSNP
rs1441638545 3589 dbSNP
rs1176800538 3598 dbSNP
rs1029815584 3602 dbSNP
rs1462829107 3607 dbSNP
rs140084812 3612 dbSNP
rs1185770398 3613 dbSNP
rs576627002 3620 dbSNP
rs1015654847 3623 dbSNP
rs568520484 3625 dbSNP
rs1055548564 3631 dbSNP
rs1306418803 3633 dbSNP
rs1372220181 3645 dbSNP
rs1228523030 3648 dbSNP
rs1315354246 3648 dbSNP
rs1268080595 3660 dbSNP
rs1213393850 3664 dbSNP
rs1259293124 3668 dbSNP
rs1214646441 3669 dbSNP
rs1337415849 3678 dbSNP
rs937929828 3679 dbSNP
rs1263312728 3680 dbSNP
rs1232348230 3691 dbSNP
rs55960428 3696 dbSNP
rs1046226708 3708 dbSNP
rs1411830558 3713 dbSNP
rs1017097701 3760 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9631.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guGGUCGAUCGGAGUGg 5'
            | | |  | ||||| 
Target 5' ugCGAUCCCGGCUCACu 3'
2 - 18
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guGGUCGA-UCGGAGUgg 5'
            | | ||  ||||||  
Target 5' ugCAACCUCUGCCUCA-- 3'
23 - 38
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000231498.3 | 3UTR | GUGCGAUCCCGGCUCACUGCAACCUCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
74 hsa-miR-4316 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080624 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT095088 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT123331 CALU calumenin 2 2
MIRT154964 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT370850 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT442955 SGCD sarcoglycan delta 2 2
MIRT448240 ZNF774 zinc finger protein 774 2 2
MIRT451710 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT452072 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT455665 GLO1 glyoxalase I 2 2
MIRT460354 TXNDC16 thioredoxin domain containing 16 2 2
MIRT461908 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462047 HOXC13 homeobox C13 2 2
MIRT462735 EFNB1 ephrin B1 2 2
MIRT463409 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT464952 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT465052 TSR1 TSR1, ribosome maturation factor 2 2
MIRT467549 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 4
MIRT470226 PRRC2A proline rich coiled-coil 2A 2 2
MIRT474081 LMBR1L limb development membrane protein 1 like 2 2
MIRT474481 KLHDC8B kelch domain containing 8B 2 2
MIRT474704 KIF3A kinesin family member 3A 2 2
MIRT474897 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT475203 IL2RB interleukin 2 receptor subunit beta 2 2
MIRT477664 EFHD2 EF-hand domain family member D2 2 2
MIRT477775 E2F3 E2F transcription factor 3 2 2
MIRT477940 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478224 DDX52 DExD-box helicase 52 2 2
MIRT479904 CCDC117 coiled-coil domain containing 117 2 2
MIRT480639 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT482435 ADM adrenomedullin 2 10
MIRT483908 GNB1L G protein subunit beta 1 like 2 2
MIRT484161 FAM71B family with sequence similarity 71 member B 2 2
MIRT484405 SNX19 sorting nexin 19 2 2
MIRT485426 LASP1 LIM and SH3 protein 1 2 2
MIRT489788 KRT80 keratin 80 2 4
MIRT490813 ASB1 ankyrin repeat and SOCS box containing 1 2 4
MIRT491176 LAMA5 laminin subunit alpha 5 2 2
MIRT491573 HSDL1 hydroxysteroid dehydrogenase like 1 2 2
MIRT492633 PLXNA1 plexin A1 2 2
MIRT492984 NAV1 neuron navigator 1 2 2
MIRT496441 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT501829 NCOA3 nuclear receptor coactivator 3 2 2
MIRT502165 KIAA0195 transmembrane protein 94 2 2
MIRT508652 DIABLO diablo IAP-binding mitochondrial protein 2 4
MIRT509554 ACTG1 actin gamma 1 2 4
MIRT520033 YOD1 YOD1 deubiquitinase 2 6
MIRT523969 DVL3 dishevelled segment polarity protein 3 2 2
MIRT526150 KIAA1456 KIAA1456 2 2
MIRT530330 ARHGAP1 Rho GTPase activating protein 1 2 2
MIRT539985 SLC24A4 solute carrier family 24 member 4 2 4
MIRT540851 NUP155 nucleoporin 155 2 2
MIRT542326 LIMD1 LIM domains containing 1 2 2
MIRT558908 CBX5 chromobox 5 2 2
MIRT563663 SMC4 structural maintenance of chromosomes 4 2 2
MIRT565433 SURF4 surfeit 4 2 2
MIRT567773 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT615573 NCS1 neuronal calcium sensor 1 2 2
MIRT627336 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT632965 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT634307 SNTN sentan, cilia apical structure protein 2 2
MIRT641569 RAX retina and anterior neural fold homeobox 2 2
MIRT660509 ARL5A ADP ribosylation factor like GTPase 5A 2 2
MIRT662703 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT663214 ZNF277 zinc finger protein 277 2 2
MIRT665318 YIPF4 Yip1 domain family member 4 2 2
MIRT695264 CD209 CD209 molecule 2 2
MIRT696231 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT698867 SRPR SRP receptor alpha subunit 2 2
MIRT702700 IPO9 importin 9 2 2
MIRT704236 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704935 CCDC120 coiled-coil domain containing 120 2 2
MIRT724285 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT735579 VEGFA vascular endothelial growth factor A 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4316 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-miR-4316 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4316 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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