pre-miRNA Information
pre-miRNA hsa-mir-4291   
Genomic Coordinates chr9: 93819357 - 93819421
Description Homo sapiens miR-4291 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4291
Sequence 11| UUCAGCAGGAACAGCU |26
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1265713434 9 dbSNP
rs1433969451 12 dbSNP
rs1372852268 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RLIM   
Synonyms MRX61, NY-REN-43, RNF12
Description ring finger protein, LIM domain interacting
Transcript NM_016120   
Other Transcripts NM_183353   
Expression
Putative miRNA Targets on RLIM
3'UTR of RLIM
(miRNA target sites are highlighted)
>RLIM|NM_016120|3'UTR
   1 TTAAGATCTGAACTCTCAGCTATGTAGCTGATATAGTGATGGGCAAACAGGAATCACTTGCTTTTATGTCCACTTTTTGA
  81 GTGGTACTTAAATGTAAAGTAACAACCTGAATTGAGTCATTGCTTTCTGAAGGAATCATTGTCCTTTCTCCAGTTTTTGT
 161 TCCAGAATAAAAGGAAATATTTTAAAAGCCACGTTATAGGACCTAAAAATCTGATTTCCGTACCAGTTAAATTGGTAGCA
 241 TCACTGTTACTGATAATTTATCATATACACTTGTCAATTTTTCCTTTGTTATCTTAAAAGATCTGCCTTAGCAATGGCTC
 321 CTTTTTCATGTTGATCTTTAAATTTTCCCACACCATAAGAGAGGAGCAAAGGAAATTACCAGTTTAGACTAAGTTACAGT
 401 ATGTGTTTCATAAGTGATTAAAGCTATATCATTCCCAGTTATTAGTTAACACAAATTCAGCCACATTCTGAGTATTGTTT
 481 GTTCACCTTTCAGACTTGGTGATACTGGACATGTCAGTGTAAATAACACTAAGGTTAGGATCTTCTAAGTGTATAACTGT
 561 CTCCTAAGCCCATCACTGTGGCACACTGTAGAGTGAGCTTATAGTTTAATTGAGATATTTATCTTGTGGAAATATTAAAA
 641 AGCCTATGCTTGTGTAAGTGAAAAAAAATCACATTCATTTGTTTAAAAATGTAAAGCTATTTTGTAGAGGCTCAGTACTT
 721 TTCCAATGCACTGTTGTATGAATGCATTAAAAATTGTAAAGTACCATGCTTAGAACTGAGAAAACTGCTTTTTGTGAGCC
 801 AACATAGTAACAAACACACCAAACAAAGTACAAAGCTGCTTTTGTAAGTGTGTAGATGTCAAGAGCAGAACATATCTATA
 881 ATATTTAATGTGTGAACAGCTACTGTGACATGCAAAGGAAAGGACAGTGCAGAATTAAACCGTGTTGAAGACCAGTGGAA
 961 ATTGTATAATTTAACTTGGATTTAGGCAGGAAGTGAAATATGGGAGGAGTAAAGAAAACTGAAGAATTTAAAGTTTTCCT
1041 GAAGACAGTAATAATGCAGACACAAACTGGTTTCATATGGTGAGAGCAGCCACAGCAGCAGCTTGACCTGGTATTCTACC
1121 TGAGTAGATGAAGCAGAAGATCAGCAAGTTTGGCAGAGTTTTGGTTTAAGAAAAACAAACCACTACTACCTAGCACAAGT
1201 TAAATTTACAAGTCTGCTCCTCAAAAATGAAAAAATGGAGGAAAGAGACTATAAAACCACTTTTAGCATATGAATTGCAG
1281 TTGGTACACATGTGTGTGTTAATAGGAAAGTCTCGAATTTGTGTTGTTTTTGAGATTTGTCATTTAAGGTACCAGTGCAC
1361 ACTTGATCATATTTCATTACTATCTCTAACACAGTCCTAACATCTCAAATTTAAAGACCAGTTGAAGATTAAGGGATTTT
1441 TATCCTTTGTTGAAAGTCATGTTGGGTTATTTGAAATTCAAATTTTAATTGTGCTGCCCATATATGAAAATGAGACTGCT
1521 GACTCGCTATCTATGGACATGCACTTTATGTTGGTTTCTTAGTAGTAAGAGTAACTTCATGATAACCCCAGTCTTCTTGC
1601 CTAATTTCTTTTTTGAGACTAGCTGGGGTTAGGATTAGAATGACTATGGAGCAGATATTTGTTCTTCTGGGAAAAGCTTT
1681 AACAGGCCAAAATAGGGATTGAACTTGTCCTTGGCCTTTATCAAAGCAAGCTAGCTACCCAGACGTAGTCAAATACTCTA
1761 CAAAATAAACAAGTCTGCTTTAGGAATTGTCTGGGTACCTTCACTGTTACCAACTTAGCTGTAAAGATTATTTCAAAGCT
1841 CACTCTTCCATGATTTCTTCTGGCTTTCAATCCTATCTAAGTATCAAGGAAATTAACTTGTAAATATGGTAGTTGTTTAC
1921 TAAGGATATGTACTGCTCTTGCAAGGAAATAATGTCCAAACAAAGCTTCACTTATTTTTTTTAATATAAGCAGATTTCAC
2001 TGTTTATGGCGCTTATGTAATACATTTTATCTTTTTAAAAATTTGTCCGTGTAAAAGTCAGGATTCCTTTATATTTGTGA
2081 GCCTCCTTTTCTCCTTTCCTAAGGATGTAATCTACAGTTTTCAGATCTGCAGGGTAGTCTTGATTGGCTAAAAACAAATC
2161 AATTTTCTTCTTGGCATAAAGTGTTTCATTATTATAGGGGTGTTCATTTTAAATAGTTTAAAAACAATTGCAGCACATTC
2241 TAAGCATAAGAGAAAGTTATTGACAACAGGTACCTTCCTAATCTCCCAAGACGTACTTACTCATTTGTGAAGTATTAAAG
2321 TAAGAGGTAACTCAAGCAGAATGCTGGCTATGAATGTAGATATTGAAGCTATTCATAAACACTGGAAATAGAATTTTAAG
2401 CTTTTAGCCTTCAGTGGAATGCACATATTGGACATGTGCATGTGAACACCTTTTTCAGTAGCACTCACGGATTTCCATTC
2481 GATTGTATAGAATGAATACAAGTGTTTTAGTGGAATTTGCTACTTAATTTTTAATCTTGCGATGTCCGTGATTATTACAT
2561 GCTTACTAGTGTTGTGGACATTGAAGACAAGGTCATTCGTAGGTGTCAGATTACAATGGAGAACAAAAATCGTTTTCCCC
2641 CCACCCACATCCAAACACCATTCTCGAGGGAGCATTTCTTGCAAAACACCTTACATTTCATTTTCTATCTTTGCACTTTT
2721 TCTTAAGTACAGAAAAGTTGTCTTTAAGACCTAGTTTGAACTTCATGCAGTAAGAGGAACAAGGATAAACAATGTTGGGA
2801 GTTCACATTGTTCAGAGCATAAGGAAAAGTACCAAAACCCAAATTTTCTTGAATATTTCAGATGTTTTTAAAAACTCACT
2881 TCTAGTCTGAAACATTTGAATTGTTTTAACTCTGAGCAGCTGACAAAGTTGAGGTTTTTTTGTTTTGTTTTGTTTTGTTT
2961 TGTTTTTTTGAGACAGAGTCTTACTTGGTTGCCCAGGATGAAGTGCAATGGAGCGATCTCGGCTCACTGCAACCTCTGCC
3041 TCCTGGGTTCAAGCAATTCTCCTGTCTCAGCCTCTCGAGTAGCTGGGATTACAGGCGCATGCCACCACACCTGGCTAGTT
3121 TTTATATTTTTAGTAGAGATGGGGACTTCACCGTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATGTGCCTG
3201 CCTCGGCCTCCGAAAATGCTGGGATTACAGGCGTGAGCCACCATGTCCAGCCAAAGTTGAGGTTTATTAGTACTATTAGA
3281 AACAAAATTGAGCAAGTTAAGTTAAAAGTTTGCTGACTTTGTATCAACACTATAGAAGATGAGCCACCTTGTTAATTTGG
3361 AATATTTGCTCTGAAAAGAACATGTTAGTTACACCTTAATGGTGTTAATGGAGGTGGGGATTGAGAAAAGTGTTCACATT
3441 AGTGTTGGAATGTAGGTAATTGTACAGTTTATAAGACCTTTAGCACCAGGAAATAAAATATGTGTGTGTACACACACAGT
3521 TTTTAAAAACGATTGGAATTCATCCAAACCTTAAGATTAGGAAACTGATTGGCTGTAAGTGTTGCCTCAAGTAATGTGTC
3601 CCCCGCCCCATAACATGTCTTTTCTGTGCCAAGTATCCTCTCCTAGTGTCAGTGTCTCAAATTATATTTATGAAGGGTTA
3681 TCACATAATATGCTTTGTATTTAACTACCTGCTTCCCAGGCGTCCATGACATGAAATGGGTGAAGCATCAGCCATGACTT
3761 TCGGTCAGTTCCCAAAATACCCAAATGATAGGGAGGTAAAGATTGCAAAATTCCTCTTAAAAGGCCATTTTTACAGCTTG
3841 CTAAAATACAGTGGCACCTTATGGTTGTTAATATTTTTTCTTTTAAAGATGGAGAATGTTTTTATTCTTCCCCTTTTCTC
3921 CTTTGTTCTTTTGCGAACAAAAAAAATTATAATCTGCCTTATTTGATTTTTTTTTTAAGTTTTACCTTACAGGCTTCCCT
4001 GTCACATGTTTTACCATATTAAGTACATAGAAGCCATGTTTGCAGGGCACTTTTATTCTCCTAGTCTTATAAGACTATGC
4081 TAATTGTTACTTTCTGAAGTATTCTGTACCTTAGTATGCAAGATTGTTAAGGCACATGTTAAAGTGTCAGGTGTGTTTTT
4161 TTCCCTTTAATTCTTCAGTATGTTTATATTCAATAACAGTATTGTAATTCATTGAGTTAACTAGTAAATTGTGTGCTTTT
4241 GAAAAAACATGAAAAATGTAAATTGACAGCATACTTCATTTGGAAAAAAGTAAAAGATCCGAGGAACTAGTATGTCACTT
4321 ATTTATTTTTATTTTATTTTATTTTTTACTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATG
4401 GTCACAGCTCACTGCAGCCTTGACTTCCTGGGCTCAGGTGATTCTCCCACCTCAGCCTTCCAAGTAGCTGGGACTACAGG
4481 CATGCACCACATTGCCTGGCTAATTTTTTGTGGAGATGGGGTTTCGCCATGTTGTCCAGGCTGTTCTTGAACTCCTGGGC
4561 TCAGGCAATTTGCCTGCCTCATTCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCGCCCAGCCTTACTTATTTTT
4641 AAATCAGATTTTTTAATCAACTAAAACAGCTATGAGTTAAGTACCTGCCCTGCAAAAATTTTTAGAAAAAGTTTTAGGAT
4721 TATGAAATTAAGAATTATTTTCCTTAACTGGAACAGTTCTAAAATTTATCTGATACTTCTCTAACAAGTGAGTGATCTCA
4801 TGTAACCCCAGTTTGTATCTTAAAGGCTGCAGCATAGAATTGAGCTGTATAACAGTGTTAGAACTGTCAAGTGATAATCA
4881 CAGAACAGTTTGTATCGGTTTTATAATTCTCATGTCTTGATCAGATCTGAAGGAAATAGGCATACCCTCCAACATTCTAA
4961 AAATTATTTATTTTTATTAGGATTTGTTTATTAAAGTTCCACGAGCTGCTTTATGGTCAGTTGGGCTGAGTAGTAGATAT
5041 CTTAAAGACATGCAGTGAAAGTGAACCCTGTCATATCATGGTGCCTCTTTCAAGGTTCCTCTGTAAGTTCCTCATCTTGC
5121 AGAATTATTTCAATACCAAGGTATGGTTGAACCAGCTGTCCAGCCTTAACTCTATTTAGTGCCCCATTACTAATGTTCTT
5201 TTAACTGGTTTGTATGTGTTTTAACTGTCCAGTGTTTGGATTTTACCTCTTGATAGCTCCATTTGTCCCTGGTGCTGCTT
5281 TTAAGGATGTAGGGCCATGTGATCAGGTATCAAGTTGAGTAGGTACGCAGTTGGCCTGGTGATGTATCTGTGCCTGTTTT
5361 ATCTTCTCCCAGGAAGAGCTGCTTTGGTATAGTTGTTTACTTGGATTCATACAAAGAACAGGGCAGCAATCTTGGAAAGC
5441 TTTCTGAAGCTTATAAGAACCTGAAGGGGTTTGGAGGGGGAACAGTAACAAAGGCTGCCTTTATGTCTTTGGTCACAAAG
5521 CACATAGATGTATGTTCTGTAAAGACTAAAGTGATTGTTATACCAGGGCTTCCTGACCTTCGGGAGAGACTCAAAAAAGC
5601 AGAGAGGAGCACAAAGTGAAGTTAATTTGGTTGGCTTGCTTTATCTGGTTTCTCATTTTCTTTCAATTTAAACCTGAACA
5681 TAACACCCTTCTCCGATACCTATCCAGCAGACTCCTGGTTGGGAAGCCCTGTATTAAATTTTGAGAATGTACACAGTTTT
5761 CTTTTGTACAGTGCTTTACAACTGCTAAAAGTTAACTTGTTTAAAGCAAAACAAGACCTTGAAAGGTCAATCATATTAAA
5841 GCTGGTTTGATTATTAATAGTTATCTTTTAGGAAGAAGCTTTTTTCCCTATGTAAGATGTCATACTGCAGATTTAAAATA
5921 TAGACTATCAATAAAATGCATGAAGTGATCATTTGTGCTTGATCATCTCTCCTTGGGTTTTTCTTTAAAAAGGGGAATCT
6001 GCTATAAAGGTTCTGTTGCTTCAAACCAATGTCAAATAGACTTGATTTTTAGAGTCATGGAATTACAGTGCAACCTTGAT
6081 TTTTATTCCCCTCACTGCTATGAGTGTGGGCAGGTACTGGTTTATATGTTATAACTTCCGTTTTATCTGTGTTGTGTAGT
6161 TGAATGGCTTAATCGTTGAGTGGTAAAATAAAAGATTATATTCCAATACAAGAATCCTGGAAAGATTTATGTGAATGACA
6241 TTTTAAGTAGGCGCATCTTTGCTGTTTCTTGTATTCTCGCCATTGCTCTGACCACTCCCTTGCTTGCCCTGTATATATAC
6321 AAAAACTTGTAGGTGTGCACGTGTGCTTGTACTTCTGTCTTCCATTTCTATCTTAATCTCTTAAACATATTGCTTAAGCC
6401 ACTAAGATGTCCTTGTTTCAAGTAAATCGTCACATTGTGACACCTGGTGTATTGTATTATAGTTTCATTTCCTCTGGTGC
6481 CTGCAGAGCTATCTGTCATTGGCATCATAACTCGGTTTCTCAGGATAGTTTTGATGTAGTCAGCTCTTCAACTCATGACC
6561 TTCCCAAGGTTTTAAGTTTAGTGTCATTCATGATTTTATTATTTGAAACTCAATACCACCATCAAAAAGTTAGTGCTCTA
6641 GACAATGAAGCCAAAGCACAGGCATCTTAGGTCAGTGAAAAGGATCCAGACATAAATTAGCCAGGTGTGGTGGTACACAG
6721 CTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGGTAGAATCACTTGAGCCCGGGAGGTCAAGGCTGCAGTGAGCCATGATC
6801 ATGCTGATGCACTCCAGCCTGGGTTACAGAGCAAAACCTTGTCTCAAAAAAACCCCCAGATACCTAGAAGAAAGGATTCG
6881 ATAAATCTGGGTGGATTATAAACTGAACTCTTAATGGTCATTTTAAAAAATAAGAAAGCAAGGGTCCAGTTTCTTTGAGG
6961 TCTTTGAATTTAGACAAGATTTAACTATAAGGCCTTGCATGGATTACTAACTATAATTAAATTAGCTAAACTTTTCTGGT
7041 TGCTGTCAGGCATTGTATTAAGTATTCTATATAAATTATTTAATCATCACAGTGACTGTGAGGTGAAAGTATACCACCCA
7121 TTTTATAGGTAATGCAGCTGAGATACAGATGTTTGGTAATTTGCCCAGGTCACATAGTAAGTAGCAGATTATTTGCAATC
7201 ATCTTTGATGCAGTCATCTTCCTTGTGCTCTTAATCCCACTACTATATGACTTCTAATTTGTTTCTTAGTATTTATCCCA
7281 AGCCCTAGACTAGATTGCTTATGAGGTGTGATTTCTTAGGAAAAACATCAGTTTTGGCTGGTTTGCCAAGAAAAAAAAAG
7361 GCCAAATTGGTTTTTGTTTATTTTTTTGTTTGTTTGAGATGGATTCTCGCCCTGTCGCCCAGGCTGGAGTGCAATGGTGC
7441 GATCTTGGCTCACTGCAACCTCTGCCTCTGGGTTCAAACGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG
7521 CGCCCGCCACCACGCCCAGCTAATTTTTCTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAAC
7601 CCCTGATCCCATGATCTGCCCGTCTCGGCCTCCCACAGTGGTGGTATTACAGGCGTGAGCCACCACGCCCGGCCGCAAAT
7681 TGTTTTTTGTTTTTTTGTTTTTTGGAGGATTAATGGTAATATACTGTAAATTCAGTAAAGCACTGGGCATTACCAGATAC
7761 ACCTTAGCACTATGAATAACATGAACTATCATTTTAGCAGTTTAAGTGTACCTTGTAATCAGCCCTAGGGCAAACGGTAT
7841 CAAGGTGTTTTATTTCCAGAAGTCTCAAAATAGACTGGAATAAAAATTTGGTGAATTCATCAACACAGACAATGGGTCCA
7921 CGTCTTGCAGCTACAGCTGCTGCAGCTACTCCTGCTGTCCGCACCGTTCCACAGTATAAATATGCTGCGGGAGTTTGCAA
8001 TCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAGTGCAACAGCCTGCTATTCATGTACAAGGTCAGGAACCTTTGA
8081 CTGTTTCCATGTTGGCATCTGCCCCTCAAGAGCAAAAGCAAATGTTGGGTGAATGGCTGTTTCCTCTTATTCAAGCCATG
8161 CACCCTACTCTTGCCGGTAAAATCACTGGCGTGTTGTTGGAGATTGATAATTCAGAACTTCTTCATATGCTCAAGTCTCC
8241 AGAGTCACTCCATTCTAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGACTGCCCAGAAAGCAG
8321 TTAACAGTGCCACCGGTGTTCCAACTGTTTAAAATTGATCAGGGACCACGAAAAGAAACTTGTGCTTCACCAAAGAAAAA
8401 TATCTAAACATCGAAAAACTTAAATATGGAAAAAAATATCAAAATATAAAAGAAGGAAACTGAAAAAAAAAAAAAAAAAA
8481 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgACAAGGACGACUu 5'
             ||   ||||||| 
Target 5' aaaTGAGACTGCTGAc 3'
1508 - 1523 141.00 -9.30
2
miRNA  3' ucGACAAGGACGACuu 5'
            ||  ||||||||  
Target 5' agCTACTCCTGCTGtc 3'
7944 - 7959 134.00 -17.00
3
miRNA  3' ucgacaaGGACGACUu 5'
                 ::|||||| 
Target 5' ttaaaagTTTGCTGAc 3'
3302 - 3317 125.00 -7.30
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1172681467 7 dbSNP
rs757030734 13 dbSNP
rs1267795568 18 dbSNP
rs377585663 22 dbSNP
rs764067439 24 dbSNP
rs373492816 34 dbSNP
rs757879669 42 dbSNP
rs369181581 51 dbSNP
rs1385186745 61 dbSNP
rs202198284 70 dbSNP
rs747791155 72 dbSNP
rs1332078789 81 dbSNP
rs373953940 118 dbSNP
rs1052436 119 dbSNP
rs749807331 134 dbSNP
rs1273584856 138 dbSNP
rs1322245508 145 dbSNP
rs1001925785 150 dbSNP
rs1264625353 163 dbSNP
rs189073695 168 dbSNP
rs757690666 172 dbSNP
rs1046495966 193 dbSNP
rs928946600 199 dbSNP
rs918913985 218 dbSNP
rs1037321100 219 dbSNP
rs941596417 220 dbSNP
rs778479669 247 dbSNP
rs1304610788 275 dbSNP
rs910075628 277 dbSNP
rs1317428016 282 dbSNP
rs1392878236 288 dbSNP
rs1432580212 304 dbSNP
rs754790614 314 dbSNP
rs1344728247 318 dbSNP
rs1221227868 320 dbSNP
rs1284634662 324 dbSNP
rs1323880806 343 dbSNP
rs753752788 355 dbSNP
rs1281647024 361 dbSNP
rs775470432 364 dbSNP
rs954125247 366 dbSNP
rs7056769 368 dbSNP
rs1264535821 369 dbSNP
rs1480393946 376 dbSNP
rs1197432923 380 dbSNP
rs922649684 383 dbSNP
rs1480782437 386 dbSNP
rs756047265 404 dbSNP
rs796963298 423 dbSNP
rs1405994503 434 dbSNP
rs764389003 435 dbSNP
rs977161654 441 dbSNP
rs750359355 449 dbSNP
rs966776041 451 dbSNP
rs1021358691 454 dbSNP
rs1304469642 455 dbSNP
rs1345626616 463 dbSNP
rs760709225 472 dbSNP
rs1010845384 491 dbSNP
rs1352308654 492 dbSNP
rs957922374 504 dbSNP
rs1033484917 511 dbSNP
rs1001958472 512 dbSNP
rs1490343707 529 dbSNP
rs906294285 537 dbSNP
rs1271622894 538 dbSNP
rs752849617 556 dbSNP
rs28718654 562 dbSNP
rs1423020969 566 dbSNP
rs1181096470 574 dbSNP
rs1267068534 578 dbSNP
rs1362350649 584 dbSNP
rs767442977 588 dbSNP
rs1190340636 612 dbSNP
rs1372676464 618 dbSNP
rs1384350735 631 dbSNP
rs1466850808 635 dbSNP
rs1165416021 642 dbSNP
rs28460638 648 dbSNP
rs1254353527 668 dbSNP
rs1046184684 669 dbSNP
rs1390317473 669 dbSNP
rs1328430893 680 dbSNP
rs1258842120 681 dbSNP
rs1241073247 685 dbSNP
rs764183140 691 dbSNP
rs1317341519 693 dbSNP
rs1442453585 699 dbSNP
rs1300313510 711 dbSNP
rs369635373 715 dbSNP
rs993644441 723 dbSNP
rs762989384 727 dbSNP
rs1373379377 730 dbSNP
rs775748062 758 dbSNP
rs762957960 762 dbSNP
rs1434402344 763 dbSNP
rs1382850745 767 dbSNP
rs910106916 776 dbSNP
rs1049931212 806 dbSNP
rs932769559 822 dbSNP
rs1461407286 825 dbSNP
rs767681202 828 dbSNP
rs773064089 833 dbSNP
rs1377480580 842 dbSNP
rs769646725 878 dbSNP
rs765439972 893 dbSNP
rs1451002972 896 dbSNP
rs1174330017 897 dbSNP
rs1341645223 921 dbSNP
rs1452192582 925 dbSNP
rs1250089400 928 dbSNP
rs1396468287 941 dbSNP
rs1199284169 942 dbSNP
rs1262753390 942 dbSNP
rs1193747594 943 dbSNP
rs759877126 962 dbSNP
rs761585851 985 dbSNP
rs915168300 990 dbSNP
rs776318692 1019 dbSNP
rs1256568193 1020 dbSNP
rs967177119 1023 dbSNP
rs1190964261 1024 dbSNP
rs776926973 1025 dbSNP
rs1374667450 1056 dbSNP
rs1477865839 1063 dbSNP
rs1175086289 1066 dbSNP
rs1403524500 1067 dbSNP
rs1259021733 1072 dbSNP
rs1305005941 1079 dbSNP
rs1470741029 1079 dbSNP
rs1403401389 1081 dbSNP
rs1381956238 1082 dbSNP
rs1294074258 1093 dbSNP
rs1328636752 1099 dbSNP
rs1219397680 1103 dbSNP
rs1282709107 1104 dbSNP
rs1321731920 1108 dbSNP
rs1206899222 1109 dbSNP
rs1205772409 1129 dbSNP
rs1256768677 1130 dbSNP
rs1485429363 1140 dbSNP
rs913918855 1143 dbSNP
rs1263851388 1148 dbSNP
rs989856440 1163 dbSNP
rs768327808 1173 dbSNP
rs1198128561 1181 dbSNP
rs184437293 1185 dbSNP
rs1033517668 1193 dbSNP
rs375793034 1212 dbSNP
rs1002072892 1217 dbSNP
rs1350351081 1223 dbSNP
rs1453496884 1229 dbSNP
rs1287478148 1233 dbSNP
rs779639087 1236 dbSNP
rs970568426 1247 dbSNP
rs1025216248 1248 dbSNP
rs1343754523 1251 dbSNP
rs990109827 1267 dbSNP
rs372686220 1270 dbSNP
rs5981287 1275 dbSNP
rs1324827350 1277 dbSNP
rs575309014 1285 dbSNP
rs779548303 1290 dbSNP
rs1491317087 1291 dbSNP
rs774710317 1292 dbSNP
rs1354378696 1296 dbSNP
rs1221704058 1300 dbSNP
rs757744056 1302 dbSNP
rs1015944372 1303 dbSNP
rs1191198849 1309 dbSNP
rs888705621 1312 dbSNP
rs1050046167 1315 dbSNP
rs1382520678 1320 dbSNP
rs761133938 1321 dbSNP
rs1436922663 1333 dbSNP
rs1163531574 1339 dbSNP
rs1376425825 1348 dbSNP
rs5981652 1349 dbSNP
rs1448498680 1361 dbSNP
rs1294181641 1363 dbSNP
rs901363232 1369 dbSNP
rs1372936911 1372 dbSNP
rs778243260 1380 dbSNP
rs1389861401 1382 dbSNP
rs1311691965 1385 dbSNP
rs773617357 1392 dbSNP
rs1041585510 1399 dbSNP
rs1244905812 1401 dbSNP
rs945492544 1402 dbSNP
rs1361493147 1418 dbSNP
rs1221732129 1421 dbSNP
rs756377609 1428 dbSNP
rs1370854661 1430 dbSNP
rs1479476384 1436 dbSNP
rs1194611473 1438 dbSNP
rs1238356958 1460 dbSNP
rs1440704046 1461 dbSNP
rs1183363582 1473 dbSNP
rs752800308 1481 dbSNP
rs1407555904 1487 dbSNP
rs1429077729 1496 dbSNP
rs913939518 1497 dbSNP
rs1460489203 1500 dbSNP
rs1333638111 1504 dbSNP
rs1377836426 1512 dbSNP
rs1451727396 1516 dbSNP
rs1208611513 1525 dbSNP
rs989442986 1529 dbSNP
rs936713996 1533 dbSNP
rs1294719393 1543 dbSNP
rs771591020 1546 dbSNP
rs980683570 1549 dbSNP
rs970601277 1554 dbSNP
rs1460590524 1564 dbSNP
rs1024829143 1571 dbSNP
rs1241654321 1581 dbSNP
rs1473957804 1587 dbSNP
rs577814837 1589 dbSNP
rs1272006532 1594 dbSNP
rs1426813279 1599 dbSNP
rs1172906542 1603 dbSNP
rs961829157 1646 dbSNP
rs747653913 1658 dbSNP
rs1334494406 1669 dbSNP
rs767636483 1671 dbSNP
rs1448422197 1685 dbSNP
rs868348102 1700 dbSNP
rs1417132737 1701 dbSNP
rs1269535290 1708 dbSNP
rs1356582831 1743 dbSNP
rs1307797059 1744 dbSNP
rs1219999035 1745 dbSNP
rs1409012982 1756 dbSNP
rs1278252858 1766 dbSNP
rs759527149 1772 dbSNP
rs1221335545 1773 dbSNP
rs770853723 1773 dbSNP
rs1280236846 1778 dbSNP
rs192576029 1802 dbSNP
rs1005975436 1808 dbSNP
rs1444501316 1808 dbSNP
rs1242116316 1822 dbSNP
rs1487588515 1836 dbSNP
rs1196001873 1848 dbSNP
rs190333181 1857 dbSNP
rs1480129066 1870 dbSNP
rs1174576044 1875 dbSNP
rs1427459455 1879 dbSNP
rs1414830564 1880 dbSNP
rs1317357431 1886 dbSNP
rs1343411296 1889 dbSNP
rs1401732845 1900 dbSNP
rs1393816895 1908 dbSNP
rs765139973 1909 dbSNP
rs1169162636 1911 dbSNP
rs1276249934 1925 dbSNP
rs1462090558 1933 dbSNP
rs1345272868 1938 dbSNP
rs761640744 1946 dbSNP
rs1185798942 1956 dbSNP
rs1283982985 1960 dbSNP
rs1476138031 1963 dbSNP
rs1352208094 1965 dbSNP
rs1219477146 1970 dbSNP
rs1264468818 1974 dbSNP
rs1490211425 1981 dbSNP
rs1028643579 1983 dbSNP
rs997117653 1983 dbSNP
rs184600418 1991 dbSNP
rs1436322998 1992 dbSNP
rs1157821431 2005 dbSNP
rs1405556551 2005 dbSNP
rs901391282 2006 dbSNP
rs1421234564 2009 dbSNP
rs1041222518 2010 dbSNP
rs1364810064 2011 dbSNP
rs192306728 2017 dbSNP
rs1324944546 2022 dbSNP
rs892632090 2026 dbSNP
rs28507240 2037 dbSNP
rs1440990608 2041 dbSNP
rs1277371034 2048 dbSNP
rs1242696896 2049 dbSNP
rs1375176634 2049 dbSNP
rs887142373 2057 dbSNP
rs1287372948 2062 dbSNP
rs1359344537 2069 dbSNP
rs760390424 2091 dbSNP
rs1208187653 2095 dbSNP
rs1355785320 2101 dbSNP
rs748952366 2114 dbSNP
rs1452210436 2127 dbSNP
rs868061654 2133 dbSNP
rs1047055702 2134 dbSNP
rs936744872 2138 dbSNP
rs1179015002 2140 dbSNP
rs1384590918 2145 dbSNP
rs188428948 2150 dbSNP
rs771668702 2154 dbSNP
rs1164539241 2160 dbSNP
rs898420411 2161 dbSNP
rs1044973505 2165 dbSNP
rs1390872481 2173 dbSNP
rs1408813572 2173 dbSNP
rs926650486 2178 dbSNP
rs1401944965 2197 dbSNP
rs947886276 2197 dbSNP
rs917737267 2200 dbSNP
rs1056253320 2214 dbSNP
rs1243291544 2231 dbSNP
rs1357155393 2237 dbSNP
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rs1453348177 6752 dbSNP
rs914175802 6759 dbSNP
rs183507454 6760 dbSNP
rs191822883 6770 dbSNP
rs758145769 6771 dbSNP
rs1368673153 6801 dbSNP
rs1388054094 6803 dbSNP
rs951089269 6805 dbSNP
rs1334615391 6806 dbSNP
rs1236431785 6811 dbSNP
rs1262115112 6817 dbSNP
rs1331728106 6818 dbSNP
rs986225366 6827 dbSNP
rs1026665808 6843 dbSNP
rs1467548963 6845 dbSNP
rs1193379142 6847 dbSNP
rs745577842 6853 dbSNP
rs1418512420 6858 dbSNP
rs1485154317 6875 dbSNP
rs1414452640 6879 dbSNP
rs186921051 6880 dbSNP
rs183045709 6898 dbSNP
rs1211765697 6900 dbSNP
rs963627749 6915 dbSNP
rs1459404840 6919 dbSNP
rs1018315557 6922 dbSNP
rs1395223446 6937 dbSNP
rs754474079 6939 dbSNP
rs1289884052 6952 dbSNP
rs1212737884 6975 dbSNP
rs1319856548 6982 dbSNP
rs1350692187 6985 dbSNP
rs997546989 7002 dbSNP
rs1413990813 7003 dbSNP
rs1353294257 7019 dbSNP
rs1304878731 7025 dbSNP
rs141974317 7028 dbSNP
rs1017146075 7042 dbSNP
rs890640283 7061 dbSNP
rs1480382958 7064 dbSNP
rs1014872156 7071 dbSNP
rs1006135926 7078 dbSNP
rs1326859772 7082 dbSNP
rs1467673239 7083 dbSNP
rs1424907656 7090 dbSNP
rs1187436155 7091 dbSNP
rs1415417430 7099 dbSNP
rs1164809231 7101 dbSNP
rs887649907 7103 dbSNP
rs1165463567 7120 dbSNP
rs148179457 7125 dbSNP
rs1460059837 7142 dbSNP
rs1309350874 7143 dbSNP
rs1370582495 7146 dbSNP
rs1413802468 7161 dbSNP
rs1310626708 7163 dbSNP
rs937122775 7166 dbSNP
rs906964769 7174 dbSNP
rs1230375150 7188 dbSNP
rs1314128282 7190 dbSNP
rs1307396801 7192 dbSNP
rs1226791156 7194 dbSNP
rs1183299962 7200 dbSNP
rs367972577 7203 dbSNP
rs903241607 7209 dbSNP
rs1342892226 7223 dbSNP
rs1210513685 7228 dbSNP
rs1255649368 7229 dbSNP
rs1043041145 7249 dbSNP
rs756623806 7254 dbSNP
rs1483342183 7261 dbSNP
rs947429769 7269 dbSNP
rs915906350 7273 dbSNP
rs1045868180 7278 dbSNP
rs1426682668 7307 dbSNP
rs1170347238 7316 dbSNP
rs1390259269 7319 dbSNP
rs753132113 7321 dbSNP
rs1433556904 7329 dbSNP
rs1171429672 7335 dbSNP
rs767835932 7347 dbSNP
rs1450690923 7348 dbSNP
rs945753664 7359 dbSNP
rs1343050993 7360 dbSNP
rs1429236183 7360 dbSNP
rs1433529673 7360 dbSNP
rs928478155 7360 dbSNP
rs938595162 7360 dbSNP
rs982588016 7380 dbSNP
rs1314188875 7386 dbSNP
rs1259932948 7388 dbSNP
rs1463333996 7388 dbSNP
rs951112265 7388 dbSNP
rs1190496780 7392 dbSNP
rs1248563076 7392 dbSNP
rs1458696406 7392 dbSNP
rs759930645 7397 dbSNP
rs912875273 7408 dbSNP
rs529332205 7409 dbSNP
rs1426597860 7410 dbSNP
rs774484293 7413 dbSNP
rs973808520 7414 dbSNP
rs1157825770 7416 dbSNP
rs1314538880 7417 dbSNP
rs1344983055 7418 dbSNP
rs1455974693 7433 dbSNP
rs1323191022 7436 dbSNP
rs1366533257 7438 dbSNP
rs936919851 7440 dbSNP
rs757689792 7441 dbSNP
rs1229106869 7442 dbSNP
rs766590068 7458 dbSNP
rs1220048751 7459 dbSNP
rs1372822457 7460 dbSNP
rs143650493 7479 dbSNP
rs953525883 7480 dbSNP
rs1030440100 7481 dbSNP
rs375417765 7490 dbSNP
rs1449156762 7491 dbSNP
rs1401086295 7495 dbSNP
rs1325906915 7501 dbSNP
rs1467994086 7502 dbSNP
rs1460328917 7507 dbSNP
rs1247949562 7509 dbSNP
rs1478034507 7511 dbSNP
rs1352002287 7514 dbSNP
rs1165874452 7521 dbSNP
rs976560363 7522 dbSNP
rs962103957 7525 dbSNP
rs1015337366 7526 dbSNP
rs769937245 7529 dbSNP
rs1351746675 7530 dbSNP
rs951949897 7533 dbSNP
rs1034239796 7534 dbSNP
rs746947351 7537 dbSNP
rs1441071626 7538 dbSNP
rs1348832416 7543 dbSNP
rs1238236329 7551 dbSNP
rs1213005816 7558 dbSNP
rs1333793714 7559 dbSNP
rs1226546822 7563 dbSNP
rs1001387118 7568 dbSNP
rs1267026445 7583 dbSNP
rs1451719998 7586 dbSNP
rs764763204 7592 dbSNP
rs1045511880 7593 dbSNP
rs1248926448 7598 dbSNP
rs1483851518 7599 dbSNP
rs775567458 7600 dbSNP
rs762535799 7606 dbSNP
rs1030920459 7608 dbSNP
rs1162046226 7616 dbSNP
rs771823704 7621 dbSNP
rs998946441 7622 dbSNP
rs192881565 7626 dbSNP
rs1411902037 7627 dbSNP
rs1308800740 7634 dbSNP
rs925559902 7637 dbSNP
rs903354473 7650 dbSNP
rs1354642139 7651 dbSNP
rs1445532496 7654 dbSNP
rs188491370 7666 dbSNP
rs1213882549 7667 dbSNP
rs756954832 7670 dbSNP
rs562336061 7671 dbSNP
rs923426299 7674 dbSNP
rs976233910 7675 dbSNP
rs962442518 7679 dbSNP
rs1385602222 7685 dbSNP
rs1442245887 7689 dbSNP
rs907918641 7692 dbSNP
rs1055769067 7697 dbSNP
rs1370293267 7704 dbSNP
rs1168430082 7710 dbSNP
rs759074584 7715 dbSNP
rs1431687966 7720 dbSNP
rs1294606011 7722 dbSNP
rs1401745660 7725 dbSNP
rs1473292815 7726 dbSNP
rs1453543163 7749 dbSNP
rs878922799 7753 dbSNP
rs748879541 7760 dbSNP
rs1340779669 7767 dbSNP
rs1343797767 7769 dbSNP
rs1156518364 7783 dbSNP
rs1429955697 7785 dbSNP
rs1295298140 7788 dbSNP
rs777266242 7803 dbSNP
rs755613463 7805 dbSNP
rs753261029 7812 dbSNP
rs1001437824 7824 dbSNP
rs1192419138 7832 dbSNP
rs1342466750 7835 dbSNP
rs768045788 7836 dbSNP
rs929826456 7842 dbSNP
rs1281171917 7845 dbSNP
rs1443293703 7847 dbSNP
rs1188547209 7848 dbSNP
rs919753020 7853 dbSNP
rs755336840 7857 dbSNP
rs973849585 7880 dbSNP
rs1269423507 7886 dbSNP
rs1189325010 7888 dbSNP
rs1024555202 7889 dbSNP
rs550106028 7896 dbSNP
rs1174480945 7898 dbSNP
rs1402722205 7905 dbSNP
rs891554218 7907 dbSNP
rs1456506413 7909 dbSNP
rs942437935 7911 dbSNP
rs183878688 7912 dbSNP
rs999844997 7914 dbSNP
rs1485453700 7921 dbSNP
rs1283613208 7925 dbSNP
rs889439229 7928 dbSNP
rs1234974338 7929 dbSNP
rs77850446 7933 dbSNP
rs1346229621 7944 dbSNP
rs1208460826 7945 dbSNP
rs1354606311 7950 dbSNP
rs976280420 7950 dbSNP
rs1466667288 7951 dbSNP
rs955138097 7954 dbSNP
rs77674268 7957 dbSNP
rs1314006052 7958 dbSNP
rs77166218 7960 dbSNP
rs763284139 7961 dbSNP
rs1338910120 7965 dbSNP
rs977640651 7966 dbSNP
rs773502143 7976 dbSNP
rs932223707 7981 dbSNP
rs923508681 7982 dbSNP
rs1040949893 7988 dbSNP
rs77814275 7989 dbSNP
rs868334807 7993 dbSNP
rs74559061 7996 dbSNP
rs765480974 8000 dbSNP
rs1464146570 8008 dbSNP
rs940839218 8020 dbSNP
rs1323848210 8027 dbSNP
rs1378846376 8028 dbSNP
rs77407345 8038 dbSNP
rs1286857687 8039 dbSNP
rs761973821 8046 dbSNP
rs1260779207 8049 dbSNP
rs78118824 8053 dbSNP
rs775342071 8057 dbSNP
rs1487570647 8058 dbSNP
rs779619275 8076 dbSNP
rs1268087550 8078 dbSNP
rs1482869795 8079 dbSNP
rs77921515 8084 dbSNP
rs1413919375 8085 dbSNP
rs1472786522 8086 dbSNP
rs1164076399 8089 dbSNP
rs907976436 8093 dbSNP
rs984854502 8094 dbSNP
rs1459034931 8102 dbSNP
rs1163371070 8103 dbSNP
rs1198935685 8103 dbSNP
rs1347303935 8104 dbSNP
rs776858201 8108 dbSNP
rs1309461703 8110 dbSNP
rs1227361496 8112 dbSNP
rs894837768 8113 dbSNP
rs772018102 8124 dbSNP
rs1312696506 8125 dbSNP
rs867999880 8126 dbSNP
rs1247572743 8134 dbSNP
rs1266114507 8138 dbSNP
rs1341474690 8139 dbSNP
rs1203351121 8144 dbSNP
rs867642028 8146 dbSNP
rs745755562 8153 dbSNP
rs1333161157 8156 dbSNP
rs866011482 8158 dbSNP
rs1253755048 8160 dbSNP
rs952052571 8162 dbSNP
rs1425495107 8163 dbSNP
rs1403722347 8167 dbSNP
rs1389082682 8168 dbSNP
rs868576827 8175 dbSNP
rs866650596 8176 dbSNP
rs1421445875 8181 dbSNP
rs1370766268 8184 dbSNP
rs1172710438 8190 dbSNP
rs866155402 8191 dbSNP
rs868820973 8193 dbSNP
rs1185697545 8197 dbSNP
rs1444286732 8206 dbSNP
rs980081001 8208 dbSNP
rs867984084 8218 dbSNP
rs1226232357 8222 dbSNP
rs774205613 8225 dbSNP
rs1277091726 8229 dbSNP
rs796592019 8231 dbSNP
rs879068026 8233 dbSNP
rs1484105857 8234 dbSNP
rs1260600026 8246 dbSNP
rs1247310467 8248 dbSNP
rs879005635 8252 dbSNP
rs1189965823 8255 dbSNP
rs1286185652 8255 dbSNP
rs1334683560 8257 dbSNP
rs1282715999 8259 dbSNP
rs1242173731 8261 dbSNP
rs1467896321 8264 dbSNP
rs1341837363 8270 dbSNP
rs796755702 8278 dbSNP
rs1388515193 8279 dbSNP
rs770560649 8283 dbSNP
rs1445470535 8288 dbSNP
rs1397488389 8292 dbSNP
rs1333364535 8297 dbSNP
rs749004309 8301 dbSNP
rs989071146 8304 dbSNP
rs879022589 8305 dbSNP
rs1313782000 8307 dbSNP
rs955883627 8308 dbSNP
rs1161193076 8309 dbSNP
rs1463515360 8311 dbSNP
rs1415254362 8320 dbSNP
rs1210442711 8324 dbSNP
rs111549797 8328 dbSNP
rs112806379 8334 dbSNP
rs1189164771 8344 dbSNP
rs1426790547 8345 dbSNP
rs1435326380 8358 dbSNP
rs1032754132 8361 dbSNP
rs201084589 8363 dbSNP
rs879155337 8369 dbSNP
rs1240096569 8370 dbSNP
rs200442865 8383 dbSNP
rs1468382809 8387 dbSNP
rs879222169 8392 dbSNP
rs1345936811 8393 dbSNP
rs1435813603 8396 dbSNP
rs967542478 8405 dbSNP
rs371406235 8406 dbSNP
rs1224316329 8412 dbSNP
rs1287496862 8413 dbSNP
rs201122554 8425 dbSNP
rs1357456040 8428 dbSNP
rs1284865117 8430 dbSNP
rs1450579665 8436 dbSNP
rs1265727523 8437 dbSNP
rs1238975212 8438 dbSNP
rs1247893239 8439 dbSNP
rs1374024867 8440 dbSNP
rs889489425 8449 dbSNP
rs1251625456 8452 dbSNP
rs769343117 8452 dbSNP
rs1471813899 8454 dbSNP
rs1162055423 8463 dbSNP
rs1027948878 8465 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51132.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000332687.6 | 3UTR | CUGACUCGCUAUCUAUGGACAUGCACUUUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000332687.6 | 3UTR | ACUCGCUAUCUAUGGACAUGCACUUUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-4291 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102445 CALU calumenin 2 4
MIRT108677 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT125969 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT179018 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT379033 CDK6 cyclin dependent kinase 6 2 6
MIRT442473 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT442910 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT442979 ZNF736 zinc finger protein 736 2 2
MIRT445663 TNFSF15 TNF superfamily member 15 2 2
MIRT446237 FZD6 frizzled class receptor 6 2 2
MIRT448860 FAM49B family with sequence similarity 49 member B 2 2
MIRT455559 TRAF1 TNF receptor associated factor 1 2 2
MIRT459704 ZNF641 zinc finger protein 641 2 2
MIRT460608 FEM1A fem-1 homolog A 2 2
MIRT462251 LAMA4 laminin subunit alpha 4 2 2
MIRT462469 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT466656 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT466841 STX6 syntaxin 6 2 2
MIRT471403 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471517 PCGF3 polycomb group ring finger 3 2 2
MIRT471681 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT472858 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT474813 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 2 2
MIRT474931 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475814 HDGF heparin binding growth factor 2 2
MIRT480434 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480903 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT481478 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT484982 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485019 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485036 TMEM189 transmembrane protein 189 2 8
MIRT495074 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT496004 CD180 CD180 molecule 2 2
MIRT500675 TRIM37 tripartite motif containing 37 2 2
MIRT504544 ZNF417 zinc finger protein 417 2 6
MIRT506782 KLHL15 kelch like family member 15 2 6
MIRT507256 FGF2 fibroblast growth factor 2 2 6
MIRT507386 EN2 engrailed homeobox 2 2 2
MIRT512505 BTBD19 BTB domain containing 19 2 2
MIRT516903 CTSB cathepsin B 2 2
MIRT528124 PPP1R10 protein phosphatase 1 regulatory subunit 10 2 2
MIRT528874 ATF3 activating transcription factor 3 2 2
MIRT536091 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT541079 RLIM ring finger protein, LIM domain interacting 2 2
MIRT541099 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545360 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545831 ZNF367 zinc finger protein 367 2 4
MIRT547115 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT547312 NPTN neuroplastin 2 2
MIRT547959 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT549943 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT550749 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565145 TUBB2A tubulin beta 2A class IIa 2 2
MIRT571050 POLQ DNA polymerase theta 2 2
MIRT571361 ZNF45 zinc finger protein 45 2 2
MIRT610133 FOXI2 forkhead box I2 2 2
MIRT613145 DSE dermatan sulfate epimerase 2 2
MIRT613379 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT615752 C6 complement C6 2 2
MIRT616460 ADRA2B adrenoceptor alpha 2B 2 2
MIRT616719 FEM1B fem-1 homolog B 2 2
MIRT618312 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT631491 RASSF4 Ras association domain family member 4 2 2
MIRT643134 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT643482 DISC1 disrupted in schizophrenia 1 2 2
MIRT649715 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT653542 SLC38A7 solute carrier family 38 member 7 2 2
MIRT666307 SLC22A3 solute carrier family 22 member 3 2 2
MIRT692005 NAP1L4 nucleosome assembly protein 1 like 4 2 2
MIRT696838 ARL2BP ADP ribosylation factor like GTPase 2 binding protein 2 2
MIRT698204 TMEM248 transmembrane protein 248 2 2
MIRT703316 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT709376 FAM13A family with sequence similarity 13 member A 2 2
MIRT710112 MED23 mediator complex subunit 23 2 2
MIRT711975 HOMER2 homer scaffolding protein 2 2 2
MIRT712275 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT714108 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT719113 MAML1 mastermind like transcriptional coactivator 1 2 2
MIRT719727 SLC39A11 solute carrier family 39 member 11 2 2
MIRT720018 TFAP2C transcription factor AP-2 gamma 2 2
MIRT720358 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT720372 NUDT3 nudix hydrolase 3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4291 Platinum-based doublet chemotherapy resistant High Lung Adenocarcinoma tissue
hsa-miR-4291 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-4291 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-4291 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-4291 Radioactivity Iodine resistant High Papillary Thyroid Cancer tissue
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4291 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4291 Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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