miRTarBase - #MIRT541816


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SMU1   
Synonyms BWD, SMU-1, fSAP57
Description DNA replication regulator and spliceosomal factor
Transcript NM_018225   
Expression
Putative miRNA Targets on SMU1
3'UTR of SMU1
(miRNA target sites are highlighted)		 
>SMU1|NM_018225|3'UTR
   1 TTCAACTTTTCTTTTTAAATCAGCTCGAAAGCATGTACTTAAATGAAGCATATTCATGTAATGTGCTTTTTTTTTTTTTT
  81 GCCAGCTTTTCTAAGCAAATAGATTGTCTGAATTAGTCACAGAATAATTTTGTGAAAATTCATGTTTAAGTAGCAACTAC
 161 CCTTTCTTTTTTTATATATTTTTAAGGTATTAGTTTATCTTCTTCTAACTGGTGCAGTCACTTAATGTTTTCATTAATCT
 241 TCGACCTGGAGAGTGAAATACTGATATTTCTAGAAAAAAATTCTACTCCTCTGATTATTTGAAATGCTGAGGAAAATGTC
 321 CCTCCCATAGTAAAACTTGTAAATAAGGAACTATATCATATTCAGTAGCTGTGTTCTGTTCCATCTTTTTTTTTTTTTTT
 401 GAGATGGAGTTTTGCTTGTTGCCCAGGCTGGAGTGCAGCGGCACGATCTTGGTTCACTGCAACCTCCGCCTCCCAGGTTC
 481 AAGCGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGGACTACAGGTGTGCGACACCATGCCTGGCTAATTTTTTTGTAT
 561 TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAAGGATCCACCCGCCTTGGCC
 641 TCCCAAAGTGCTGGGATCACAGGCGTGAGCCACCATGCCCGGCCCATCTTTTTTTTTTTTTTTTTTTTTAAAGATGTTAA
 721 TAAACTTTATACCTTTCTGGAGACTTTGTTCTAAAATGTACATAAATGCTCATCTAGTTAACATATTTACTTAGAATGTG
 801 GGAGGAGGAGTCACATTATTATCCCTGAATCTCAAGTACAGCAGAAGTGAATTCCTGGGATAGTAGGATAGACTAACATG
 881 TAAAAAGGCCAGGTGATGCATAGGTTCTCATTTCACTGCCCTCAGCCTTCCTCTCCTTCTGAGCTGTGCCTTCTCACATG
 961 TTCAGTCAACTCCAGGGAATATTGTCTCCATCTTCTGGATAGAACTAGTTGCAGGATCCGTTACAAGAATTCAGAGTTTT
1041 GGCATCTCCCCTTTGTATGTTGTAGGAGAAGGTTTGGCATTGAAAATGTGCTGTTGTTCCAAAGAAAAATTAGCAAAGGA
1121 CTTGAGATTTAGAAAAGTCTCCTTTGTAATGTGCATCATTACCAGTTATCTAAAGAAAAACATGTAAAAGCCAACAAAAC
1201 CCTTGAAAATATTTTGCATATGGATGTCTGTTTCACGTTTCAACTGAAGATGTATAGAGCACCTCTGATGATGAGGAAGA
1281 TACCATGCTAGGCAGTACTTTCAAGAACGTGAGTTCTTATTTCTGCAGGCCTTTTGTGCCCCCTTTTAAATGTTAGCATT
1361 TATTAGGTACAAACTAGTGGGGAAGGTTTTTTTAAAAAGTTTTGCAGTCTTGTAATTTACCTTTTTAAAAAATTTATTTT
1441 ATTTTTCTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTCAGCTAACTGCAACTTCCACTT
1521 CCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGACTACAGGCGCATGCCAGCATGCCTGGCTAATTT
1601 TTGTATTTTTAGTAGAGCGGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTGCC
1681 CTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCTTGTAATTTACCTTTGATGGTGACCTGAAA
1761 TGCAGTATGATCCTATATGTGGCACGTAGTAATGTTCAGTGTTTGCTGAATTAATTCTGGGCAGCACTAAGAAATCCCTC
1841 TTTCCCAGTCATATTCTATAACACATTTCCCATTTGCCACAAAACCTGCAGCTTTTTGGTCCAGGTAATGACATTTGCTG
1921 CCATTTTGATGATTTAAAAATGGTCGTGGGAGTTGAACATAGTCATGAATTCAGGATTCCTGAGCATGTAGACAGTCATC
2001 CCAGTGGAAAGACACGTTCACTTAAGAGAAGTTTAAGTTAGAGGAAACAGTTTATGCTAAAAAAATTTTTAGAAAAGTCC
2081 TTGAGAATTTTTGATTTAGTCTTGACCTCATGAAGCTGGTAGTTATGATGTGCATAGTTTGTATCACCGTTTATGAAGAT
2161 GGAGAATCTAGTCAGCACGTGTTGGTTTATTCTAGGAATTTTTAGGGAACACTTCTGTTGCTGGCACCAGGTGATGAATA
2241 TGGTTAAAAAAAGACTCGTTTCTGCCTAAACATAGGGAAGAAGAGCAAATTAAAAGGAGTAATTAAAACTGATAAAAGCT
2321 CAAGTTACCTTTGTGATGATGAGGCGGGCAGTTAACGCGAAAGGGTTGGGAAAGGCTTCCTGGAGGGACTAGGGGGCGGT
2401 CTAAGCACAGGGAACCTAACCGGGGACTCCAGTGTGGCACAGCGGCAAGGTATGTGCTGGGCAAAATGATAGGTGTCTTG
2481 GGAGACCAGGCAAAGAGAGCTGGATTAGGAGCCGTTAAGTATATATTTTTCTTCTTTTTAAATAAAATAATGCACTGGGT
2561 GAACATGTAAACGCTAAGTTGAAAATCTGCCTTTCCCAGGTAACCCTTGTTAATCTTTCTACAACTTCATTTCGTACAAA
2641 CCTGAAAAACACACTGATTTTGTCTTTAAATGGGCACACGCTGCTTACACTCCTCGGCGCCTAGCCTTTCTGAAGCCCCA
2721 CGCGGCCGTCCCTCCAGCATTGAAGGCTGGGGCAGCCCAGCTCCCCTCCAGCGCCCTTACAGCCAGACCGCGGCGGGGTC
2801 GGGCCGCGCACGCGCAGGGCGGACGGCCGGATCTGGGGCGCCGCTGCTCCGGGTGGTCGGAGGTAGGAGTCCCATCTTGG
2881 GTCCAGGGCCGGTAGAGCCCCTTACCGGGGGTAGGGAGACTGCGCACCCGCTAGAGCCAACTGTCAGGGCCTGCAGACGT
2961 CGGGTGACGTCACTGTTACAAAATTGGCGGTCACATCGTCTTAAGGGCCGGTGGCAGCGGCTGCGCGAACGGGAGTTGGC
3041 TGCCGGGAATCAGTGCTCACTTCCTTCTGAATTGGGCGTGTGCAGTCGGTTCCTAGGGAAGTGCTCTGCTGCAGCCACCA
3121 GATTTAACGGATGCTGCTCTCTAGCACTTAACATAGAAGCTAAACTACCTGGCGTTAAAATTAATTCCATGAGCATAAGG
3201 ACATTTGTCCTATCCCCTATTCTGCTGTTGAATTAATGACTGGAAAACATTGCGCGGAGGTATTTGGGAGTAGTATGGCT
3281 TTTTTTTTTTTTTTTTTTTTAACAGCAAATGGTATAAATCTCAGGTACAATTCAGTATCTTCTTCACCAGTTGTTTTTTT
3361 TCAGCATGTATTATTACTACCACTAACGGCCTCTGTTGAGCCCTTCCTTGCTATGTAAGCAGCCATATTTAATTCTCAGA
3441 ACAATGTAATGAGGGTGCGCAAATGCACATGAAGAAACAGGTTTCCAGACGTGAGGCACCTAACTCAGTCCAACTTGCAC
3521 GAAGCTCGCATTGAAAACCAGATGTGACTCCGAAGCTAGGTTTTTTTTCTCTCTTGCCTCACTCTCAATATTGCTGTCAG
3601 TTCCTCCTCAATCTTTAGGTTTGGGCAGGGACAAAGAATACATGGATTGTTCCTCCACATGCTGCAAACACATTCACCTA
3681 AGCAGAGCACAGGTAGTGAGATGAGTAGAGAGAACTGAATTAGAGGATTCTGGATGTCAGTCTTTGCTGTCACTTCTTTT
3761 GGCTTGTGCTAGAACAGTGGTTCTTACAAGTGTCACGTGATAGACACATTCTAAGGTCCTATCCCAGACCTACAGAATCA
3841 GAAATTGGTGGTGGGGCCCAGCAAGCGTGCTCAAATTTGAGAGCAGGTAGACTACAGGGTAGTTTCCGCATATACAAAAG
3921 GTGTTTTAATTCTTGCTGTCAGTCTCAGAAGTTTCATGCTGAGATAACCAAATTTAAATGATAAAGGTGCAAGACTGACT
4001 CTTAAAATCACATTTTTTCAAATTGCCATAGCTTGCTAGTGTTCTCATTCACTGTGCTTTTACAGCTTCATTTTCCACTA
4081 TTTTAAGAGAAGAAATTGCTATGAAGTGTATGTCCAAGTGAGGAAGTTCCCTGGTCTGAGGTTGTTTAAAACTTACAATA
4161 GGCCGGGCACGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGTTCAA
4241 GACCACCCTGGCCAACATGGTGACACCCTGTCTCTACTAAGGATACAAAATTAGCCGGGCATGGTGGCACACGCCTGTAG
4321 TCCCAGCTACCTAGGAGGCTGAGGCAGGAGAATAGCTGGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGACTGTGCCA
4401 CTGCACTCCAGCCTGGGTGACAGAGCAAGACTTGGTCTCAAAAACAAAAAACAAAAAAACCAAACTTGGAATAGCAAGGG
4481 CTGCCCATTATTTAACCTTCCACGGCAATTTTAACAGTGGTATTCTGTTCCAAGTGGTTAATATTAAATCCATGTGTCAG
4561 TGTTGGTGGCTTTCAACCTTGGCTGCGCATAATCATTTTGATGCTTAGGCTACACCCAGCCGAGTTATACAGAATCCCTG
4641 GAGGGTGGGACCTGATGAGTGTTTTAATGTTTCCCGGGTAATTCCAATGGTAGCCAAGGTTAAGAACCAGTACCGTACGT
4721 ACAAAAAAGTTGAGAAGCTAATTTCACGTACAGAAAATTTGCCACTGTTCCAAGAGCACTCTCAAGCGACATAATTGGCC
4801 TCTACTCCTATTCCCTACAAGTATGAATGGGCAGGAGAAGCATCACAGAGAAAGCAGAGTTAGTGCTGGAACTTGTATTT
4881 TTGTGGATGATGACCTTGGTTAATGTTTTTTCATAGGCTCTGTTTCATAGGCTTTGTTTTTTCATAGGCTCTCCCTCATT
4961 ACATTGTTCTGAGAATTAAATATGGCTGCTTACATAGTAATGAAGGGTTCAACAGAGGCTGTTAGTGGTAGTAATAATAC
5041 AAGCTGAAAAACTACACAGACAAACCTATCAGTTTCTGCCTCTTCAGGATATAACTATTAGGTTAGTGCAAAAGTAATTG
5121 CGGTTTTTGCCATTAAAAGTAATGGCACATTACTTTTGCACCAACCGACCTAATATGACTTTCTTTTAGTGTTCTTAGGA
5201 TTTTTAATTGTAAAACATGTAACAAATTTTCCTAAACAATTGTGCAATTCAGTGGCATTATTTACGATGTTACGCAACCA
5281 CTATTGTATTTCCAAAATGTCATCACCCTAAACAGAAGCCCTGTAACATTGTCAATTAACTTCTCCTTCCCTTCCCCTCA
5361 GCCTTTGGTACTGTTTCTGCCTCAATGCATTTGTCTAAGTTTAGTTCATATAAGTGAAATTATACAATACTTGTCCTTTT
5441 T
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: ||||||| 
Target 5' tgttgcCCAGGCTGGAGTGCAGc 3'
 417 - 439 149.00 -15.80
2 
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: ||||||| 
Target 5' tgttgcCCAGGCTGGAGTGCAGt 3'
 1466 - 1488 149.00 -16.40
3 
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |:||||   :|||||| 
Target 5' cttcttCTAACT---GGTGCAGt 3'
 199 - 218 138.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30107971 16 COSMIC
COSN30185868 21 COSMIC
COSN31544392 48 COSMIC
COSN31507937 55 COSMIC
COSN20106122 66 COSMIC
COSN20106124 67 COSMIC
COSN30126426 77 COSMIC
COSN168505 79 COSMIC
COSN20469646 80 COSMIC
COSN31549986 85 COSMIC
COSN31561092 116 COSMIC
COSN20331473 127 COSMIC
COSN30133969 173 COSMIC
COSN20106121 385 COSMIC
COSN21154444 531 COSMIC
COSN20091908 879 COSMIC
COSN6389587 1032 COSMIC
COSN32061859 1483 COSMIC
COSN17469265 1488 COSMIC
COSN30398915 1576 COSMIC
COSN21872749 2290 COSMIC
COSN16276037 2521 COSMIC
COSN22834811 2707 COSMIC
COSN14734647 2775 COSMIC
COSN5244059 2980 COSMIC
COSN17312439 3018 COSMIC
COSN17076366 3051 COSMIC
COSN17076365 3058 COSMIC
COSN7566916 3578 COSMIC
COSN23993645 3584 COSMIC
COSN22715741 3747 COSMIC
COSN7566915 4092 COSMIC
COSN14737058 4164 COSMIC
COSN26597517 4670 COSMIC
COSN22780950 4856 COSMIC
COSN22399033 4957 COSMIC
COSN5122029 4995 COSMIC
COSN31572464 5002 COSMIC
COSN20106119 5143 COSMIC
COSN31573195 5184 COSMIC
COSN31536946 5218 COSMIC
COSN6389586 5274 COSMIC
COSN23802550 5398 COSMIC
COSN7808011 5431 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs768214549 9 dbSNP
rs368905416 12 dbSNP
rs376557436 18 dbSNP
rs1403989181 26 dbSNP
rs372194734 27 dbSNP
rs769311777 30 dbSNP
rs1262875808 31 dbSNP
rs745700965 31 dbSNP
rs1421672907 33 dbSNP
rs1195974551 34 dbSNP
rs1478161619 35 dbSNP
rs144916740 37 dbSNP
rs372068477 38 dbSNP
rs751481218 42 dbSNP
rs777837454 45 dbSNP
rs1224199448 52 dbSNP
rs1323169529 56 dbSNP
rs1281578931 58 dbSNP
rs1196130843 63 dbSNP
rs1463591275 65 dbSNP
rs1267596586 66 dbSNP
rs1478740987 67 dbSNP
rs1297335980 78 dbSNP
rs1439936013 79 dbSNP
rs2274768 80 dbSNP
rs1177792623 81 dbSNP
rs138553649 81 dbSNP
rs141860541 81 dbSNP
rs1470053455 81 dbSNP
rs199501271 81 dbSNP
rs34866457 81 dbSNP
rs142403776 82 dbSNP
rs868315575 84 dbSNP
rs1176594474 87 dbSNP
rs1468809181 91 dbSNP
rs1216368643 101 dbSNP
rs1021905314 105 dbSNP
rs1160882791 108 dbSNP
rs1489282226 116 dbSNP
rs1197373488 120 dbSNP
rs1268360390 123 dbSNP
rs1478473731 126 dbSNP
rs972156102 128 dbSNP
rs1406203603 132 dbSNP
rs1419255513 139 dbSNP
rs1418894945 153 dbSNP
rs990374226 154 dbSNP
rs563980530 155 dbSNP
rs1363020675 160 dbSNP
rs867681000 173 dbSNP
rs1301983566 174 dbSNP
rs957974134 176 dbSNP
rs747105715 199 dbSNP
rs1409193303 211 dbSNP
rs999723053 213 dbSNP
rs942084644 214 dbSNP
rs909311963 224 dbSNP
rs550486292 226 dbSNP
rs533612247 235 dbSNP
rs564646769 242 dbSNP
rs1176919093 246 dbSNP
rs1479982814 253 dbSNP
rs541159673 254 dbSNP
rs1019288007 279 dbSNP
rs1460951130 281 dbSNP
rs1028194086 285 dbSNP
rs1261282327 288 dbSNP
rs976672012 289 dbSNP
rs1443311594 292 dbSNP
rs1006680051 297 dbSNP
rs1241466594 297 dbSNP
rs572059033 299 dbSNP
rs1413844232 309 dbSNP
rs1406630410 311 dbSNP
rs1031780175 315 dbSNP
rs1353570562 317 dbSNP
rs10971363 322 dbSNP
rs1333107317 324 dbSNP
rs931214693 329 dbSNP
rs897168958 344 dbSNP
rs1380375303 345 dbSNP
rs1245119909 347 dbSNP
rs1037030228 351 dbSNP
rs1384962425 356 dbSNP
rs1357086517 357 dbSNP
rs1337279749 364 dbSNP
rs938798012 370 dbSNP
rs928740352 371 dbSNP
rs1437459044 376 dbSNP
rs1199569812 379 dbSNP
rs376705627 381 dbSNP
rs1403299733 383 dbSNP
rs1021375662 386 dbSNP
rs1290059679 399 dbSNP
rs190311141 401 dbSNP
rs749026086 401 dbSNP
rs879042887 401 dbSNP
rs1453999986 405 dbSNP
rs971115684 408 dbSNP
rs1172428075 424 dbSNP
rs1344233392 431 dbSNP
rs948881340 434 dbSNP
rs1451656544 439 dbSNP
rs1158912555 440 dbSNP
rs1342201585 444 dbSNP
rs1438200744 450 dbSNP
rs1428631170 452 dbSNP
rs1387424394 453 dbSNP
rs1268478768 457 dbSNP
rs1219444794 459 dbSNP
rs1184774521 462 dbSNP
rs894678203 464 dbSNP
rs141054260 467 dbSNP
rs575954668 468 dbSNP
rs1206966307 472 dbSNP
rs956314401 475 dbSNP
rs1444628192 484 dbSNP
rs1031119391 485 dbSNP
rs1240986089 492 dbSNP
rs1477881560 501 dbSNP
rs1195337328 502 dbSNP
rs977795328 504 dbSNP
rs770438839 506 dbSNP
rs1404156798 507 dbSNP
rs938938458 512 dbSNP
rs1317603771 518 dbSNP
rs1339882926 519 dbSNP
rs772608717 524 dbSNP
rs1400712281 530 dbSNP
rs898097459 531 dbSNP
rs1006565520 532 dbSNP
rs1036741559 533 dbSNP
rs556080982 536 dbSNP
rs1347632445 538 dbSNP
rs953909773 540 dbSNP
rs1026755139 547 dbSNP
rs995867129 550 dbSNP
rs1488299643 557 dbSNP
rs1218171522 565 dbSNP
rs1266234425 568 dbSNP
rs1382287254 574 dbSNP
rs1383853808 575 dbSNP
rs1379122030 580 dbSNP
rs566705980 588 dbSNP
rs1037321349 599 dbSNP
rs1361101060 600 dbSNP
rs539346332 604 dbSNP
rs1002895832 607 dbSNP
rs1367863564 610 dbSNP
rs1164532295 613 dbSNP
rs1424657146 617 dbSNP
rs1386398741 621 dbSNP
rs916926671 628 dbSNP
rs576656810 629 dbSNP
rs1367218953 631 dbSNP
rs976622800 632 dbSNP
rs907170790 633 dbSNP
rs1355047292 634 dbSNP
rs1243025743 635 dbSNP
rs1288931676 642 dbSNP
rs1044530499 651 dbSNP
rs1490054806 651 dbSNP
rs948767291 658 dbSNP
rs914783336 660 dbSNP
rs1429165300 661 dbSNP
rs1054620536 662 dbSNP
rs965244663 665 dbSNP
rs934792342 669 dbSNP
rs983040074 672 dbSNP
rs1380750666 673 dbSNP
rs185986085 680 dbSNP
rs77744010 681 dbSNP
rs1221457906 686 dbSNP
rs1357263977 688 dbSNP
rs1457491087 690 dbSNP
rs976715645 700 dbSNP
rs965083997 704 dbSNP
rs968451149 707 dbSNP
rs1227572391 708 dbSNP
rs1325368865 709 dbSNP
rs1242473833 710 dbSNP
rs1242910775 710 dbSNP
rs1313593709 710 dbSNP
rs1320538173 710 dbSNP
rs1337034003 710 dbSNP
rs138890798 710 dbSNP
rs1455705142 710 dbSNP
rs760719605 710 dbSNP
rs765718691 710 dbSNP
rs768750151 710 dbSNP
rs1491540524 711 dbSNP
rs1165567603 713 dbSNP
rs1370332458 713 dbSNP
rs1170285453 715 dbSNP
rs1401429174 716 dbSNP
rs1449494889 720 dbSNP
rs1292746437 728 dbSNP
rs1379085029 729 dbSNP
rs551667213 732 dbSNP
rs1021783865 733 dbSNP
rs1012698788 736 dbSNP
rs958842329 737 dbSNP
rs912214073 740 dbSNP
rs115591921 744 dbSNP
rs953794405 747 dbSNP
rs1026809520 748 dbSNP
rs1363336232 749 dbSNP
rs1255262693 762 dbSNP
rs566063248 766 dbSNP
rs898037360 782 dbSNP
rs1258314018 784 dbSNP
rs961480541 796 dbSNP
rs1426846779 801 dbSNP
rs1170177834 803 dbSNP
rs1015525070 808 dbSNP
rs1003190721 809 dbSNP
rs1462904326 814 dbSNP
rs1174719175 820 dbSNP
rs1359004579 823 dbSNP
rs1466982315 826 dbSNP
rs1305149474 828 dbSNP
rs1359197267 829 dbSNP
rs150661819 833 dbSNP
rs1421051754 839 dbSNP
rs1006631812 856 dbSNP
rs1221369692 863 dbSNP
rs535519987 873 dbSNP
rs1300308160 875 dbSNP
rs1481580597 877 dbSNP
rs1312599512 880 dbSNP
rs1212103541 881 dbSNP
rs1269852160 882 dbSNP
rs376699288 887 dbSNP
rs1487316120 893 dbSNP
rs1044417183 899 dbSNP
rs1264077427 901 dbSNP
rs570061730 903 dbSNP
rs1478915968 910 dbSNP
rs932093456 919 dbSNP
rs1424858485 920 dbSNP
rs1013042572 923 dbSNP
rs1178801432 925 dbSNP
rs923378302 927 dbSNP
rs1419696157 933 dbSNP
rs893235501 939 dbSNP
rs1196321009 940 dbSNP
rs1054910638 946 dbSNP
rs1255679601 950 dbSNP
rs1361958976 960 dbSNP
rs1402685383 967 dbSNP
rs550521438 969 dbSNP
rs1220750072 972 dbSNP
rs34824382 978 dbSNP
rs7847981 981 dbSNP
rs1040655683 982 dbSNP
rs1240855103 983 dbSNP
rs568817932 992 dbSNP
rs1218400793 994 dbSNP
rs779448180 999 dbSNP
rs1286794270 1008 dbSNP
rs912269449 1018 dbSNP
rs985083141 1019 dbSNP
rs968775694 1024 dbSNP
rs1246362115 1027 dbSNP
rs1488974442 1042 dbSNP
rs1193286383 1051 dbSNP
rs1378920858 1057 dbSNP
rs953679208 1058 dbSNP
rs41274013 1060 dbSNP
rs1402670408 1061 dbSNP
rs1381585200 1069 dbSNP
rs745527392 1079 dbSNP
rs527835545 1096 dbSNP
rs1163559868 1118 dbSNP
rs780922816 1120 dbSNP
rs1392488731 1124 dbSNP
rs1296226176 1134 dbSNP
rs958413970 1154 dbSNP
rs1329460392 1155 dbSNP
rs1311408150 1162 dbSNP
rs561641119 1165 dbSNP
rs1470984624 1172 dbSNP
rs1355876964 1183 dbSNP
rs1226688886 1194 dbSNP
rs1289335158 1215 dbSNP
rs1035446272 1218 dbSNP
rs1224118824 1221 dbSNP
rs1236698530 1225 dbSNP
rs541902595 1237 dbSNP
rs756778302 1244 dbSNP
rs1240585420 1254 dbSNP
rs974201387 1255 dbSNP
rs1162123522 1263 dbSNP
rs961265217 1288 dbSNP
rs962276054 1292 dbSNP
rs575681317 1293 dbSNP
rs1006503872 1297 dbSNP
rs769049591 1302 dbSNP
rs116391565 1303 dbSNP
rs1380488219 1305 dbSNP
rs1050364824 1308 dbSNP
rs971298212 1309 dbSNP
rs1283655042 1316 dbSNP
rs1380032579 1329 dbSNP
rs1230200091 1330 dbSNP
rs1022856947 1331 dbSNP
rs1012926889 1336 dbSNP
rs1317618717 1338 dbSNP
rs1182252761 1342 dbSNP
rs901904004 1346 dbSNP
rs1040473139 1351 dbSNP
rs545727650 1361 dbSNP
rs1181569807 1374 dbSNP
rs540151734 1375 dbSNP
rs1187521555 1377 dbSNP
rs943858434 1381 dbSNP
rs1236259772 1386 dbSNP
rs1473509071 1391 dbSNP
rs903044187 1393 dbSNP
rs1422485403 1394 dbSNP
rs1477983735 1394 dbSNP
rs1461401090 1404 dbSNP
rs746899897 1405 dbSNP
rs1399865087 1427 dbSNP
rs1261911967 1432 dbSNP
rs1413808124 1433 dbSNP
rs1334783980 1442 dbSNP
rs1359766238 1446 dbSNP
rs1416716535 1452 dbSNP
rs576742862 1453 dbSNP
rs1276465058 1455 dbSNP
rs893117689 1459 dbSNP
rs562764086 1468 dbSNP
rs1219539423 1469 dbSNP
rs553622135 1476 dbSNP
rs201643343 1481 dbSNP
rs1343357057 1482 dbSNP
rs200035140 1482 dbSNP
rs1200341370 1483 dbSNP
rs536870852 1484 dbSNP
rs201199201 1486 dbSNP
rs747243064 1487 dbSNP
rs769569874 1487 dbSNP
rs200069230 1488 dbSNP
rs144474481 1489 dbSNP
rs386734333 1489 dbSNP
rs571372342 1489 dbSNP
rs754992445 1489 dbSNP
rs1443581286 1490 dbSNP
rs1213823857 1491 dbSNP
rs999330526 1499 dbSNP
rs903372034 1502 dbSNP
rs936993506 1503 dbSNP
rs550741025 1508 dbSNP
rs1375681640 1513 dbSNP
rs981223277 1519 dbSNP
rs962511034 1521 dbSNP
rs1427188529 1522 dbSNP
rs34418184 1524 dbSNP
rs1417856566 1530 dbSNP
rs1376875735 1533 dbSNP
rs1400803469 1534 dbSNP
rs1320564776 1537 dbSNP
rs1307670532 1540 dbSNP
rs1455015127 1557 dbSNP
rs1015117608 1558 dbSNP
rs1232999605 1559 dbSNP
rs1275887924 1568 dbSNP
rs985384442 1574 dbSNP
rs141957124 1576 dbSNP
rs1238677026 1579 dbSNP
rs1488350188 1584 dbSNP
rs555627488 1603 dbSNP
rs1264846497 1605 dbSNP
rs1450758615 1606 dbSNP
rs535921426 1617 dbSNP
rs183693068 1618 dbSNP
rs1437723774 1619 dbSNP
rs1158014595 1621 dbSNP
rs1379722900 1624 dbSNP
rs1970027 1627 dbSNP
rs999638513 1628 dbSNP
rs919573588 1632 dbSNP
rs1469406352 1640 dbSNP
rs1388851630 1649 dbSNP
rs1386483994 1654 dbSNP
rs796407089 1658 dbSNP
rs752582536 1659 dbSNP
rs973873799 1667 dbSNP
rs939763215 1668 dbSNP
rs908408542 1673 dbSNP
rs1309199986 1674 dbSNP
rs1353728660 1700 dbSNP
rs902613854 1702 dbSNP
rs1263241191 1703 dbSNP
rs1355190353 1707 dbSNP
rs1210112956 1711 dbSNP
rs981692759 1713 dbSNP
rs1456299736 1715 dbSNP
rs971183157 1715 dbSNP
rs374993835 1722 dbSNP
rs1022907848 1723 dbSNP
rs991374011 1730 dbSNP
rs1207412587 1740 dbSNP
rs1448434870 1741 dbSNP
rs957386238 1747 dbSNP
rs1284492816 1749 dbSNP
rs1366846389 1750 dbSNP
rs539812162 1755 dbSNP
rs561029095 1769 dbSNP
rs1397079922 1771 dbSNP
rs1464405397 1773 dbSNP
rs765029602 1777 dbSNP
rs1033406129 1779 dbSNP
rs1331187622 1780 dbSNP
rs571162056 1785 dbSNP
rs998986259 1786 dbSNP
rs1393703942 1794 dbSNP
rs1309929147 1797 dbSNP
rs1339406818 1799 dbSNP
rs542307124 1807 dbSNP
rs903257846 1817 dbSNP
rs1284262822 1827 dbSNP
rs1248807061 1831 dbSNP
rs1274682879 1844 dbSNP
rs1018994999 1846 dbSNP
rs947215784 1850 dbSNP
rs1258542727 1853 dbSNP
rs1384175880 1857 dbSNP
rs1009022591 1858 dbSNP
rs1283731320 1863 dbSNP
rs1198704161 1867 dbSNP
rs1445884340 1869 dbSNP
rs1318282154 1871 dbSNP
rs191823332 1873 dbSNP
rs1423348310 1896 dbSNP
rs1188438146 1897 dbSNP
rs1420301066 1907 dbSNP
rs527923652 1918 dbSNP
rs1477003559 1921 dbSNP
rs1170395623 1922 dbSNP
rs1319261184 1926 dbSNP
rs893019716 1929 dbSNP
rs1301638589 1934 dbSNP
rs1400815040 1946 dbSNP
rs568637334 1958 dbSNP
rs930879820 1959 dbSNP
rs1294671316 1964 dbSNP
rs754124695 1976 dbSNP
rs1038437401 1980 dbSNP
rs1384524217 2007 dbSNP
rs1309073638 2010 dbSNP
rs1537042 2015 dbSNP
rs1211683463 2016 dbSNP
rs940429982 2028 dbSNP
rs908294128 2031 dbSNP
rs111733413 2032 dbSNP
rs375457948 2032 dbSNP
rs1430686779 2034 dbSNP
rs745510256 2035 dbSNP
rs1192054655 2038 dbSNP
rs984944197 2040 dbSNP
rs1314161921 2041 dbSNP
rs866775067 2041 dbSNP
rs949879231 2042 dbSNP
rs1225166531 2049 dbSNP
rs1360853708 2054 dbSNP
rs974992583 2056 dbSNP
rs915732402 2057 dbSNP
rs531292130 2060 dbSNP
rs112875605 2064 dbSNP
rs957269367 2065 dbSNP
rs1351637564 2066 dbSNP
rs537855457 2079 dbSNP
rs1227060507 2087 dbSNP
rs926009991 2093 dbSNP
rs977832414 2110 dbSNP
rs1487013536 2125 dbSNP
rs371529022 2126 dbSNP
rs1270786160 2129 dbSNP
rs10758181 2130 dbSNP
rs545417721 2133 dbSNP
rs1176115505 2137 dbSNP
rs1019463772 2143 dbSNP
rs10758180 2144 dbSNP
rs560227740 2148 dbSNP
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rs180841644 2246 dbSNP
rs1177264022 2250 dbSNP
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rs1202093194 2280 dbSNP
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rs911876083 2388 dbSNP
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rs1356297163 2391 dbSNP
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rs767267201 2500 dbSNP
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rs185396222 2610 dbSNP
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rs1001331490 2770 dbSNP
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rs1005228920 2780 dbSNP
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rs1278235520 2848 dbSNP
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rs915509115 2865 dbSNP
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rs554918692 2888 dbSNP
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rs1319427172 2995 dbSNP
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rs1008625154 2998 dbSNP
rs1297028604 2999 dbSNP
rs1034017538 3001 dbSNP
rs1000387602 3003 dbSNP
rs890230629 3005 dbSNP
rs1339444271 3009 dbSNP
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rs374187195 3020 dbSNP
rs1216133915 3022 dbSNP
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rs1177360414 3029 dbSNP
rs539773412 3030 dbSNP
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rs796179201 3099 dbSNP
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rs925493619 3191 dbSNP
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rs1215707333 3210 dbSNP
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rs978454637 3228 dbSNP
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rs1006239406 3280 dbSNP
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rs1303461427 3312 dbSNP
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rs958177011 3664 dbSNP
rs750559311 3669 dbSNP
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rs1307252844 3761 dbSNP
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rs1177819603 3765 dbSNP
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rs1343147884 3771 dbSNP
rs1016194579 3781 dbSNP
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rs377283591 3794 dbSNP
rs886463893 3796 dbSNP
rs1315419463 3802 dbSNP
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rs887142912 3811 dbSNP
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rs1159021021 3843 dbSNP
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rs761914558 3860 dbSNP
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rs1263312591 3890 dbSNP
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rs1472859853 3913 dbSNP
rs1044007020 3914 dbSNP
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rs923041466 4000 dbSNP
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rs1352870961 4050 dbSNP
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rs1030195883 4748 dbSNP
rs1242308526 4752 dbSNP
rs1354307509 4753 dbSNP
rs1307955358 4757 dbSNP
rs548728317 4758 dbSNP
rs1443896215 4774 dbSNP
rs997358688 4775 dbSNP
rs968480797 4779 dbSNP
rs1052340568 4783 dbSNP
rs915225880 4786 dbSNP
rs185804909 4787 dbSNP
rs956779316 4788 dbSNP
rs1358952443 4791 dbSNP
rs1029667482 4793 dbSNP
rs368161878 4800 dbSNP
rs754824599 4804 dbSNP
rs528878088 4806 dbSNP
rs1303804225 4807 dbSNP
rs147872294 4809 dbSNP
rs558571306 4817 dbSNP
rs1228249771 4821 dbSNP
rs1381451249 4823 dbSNP
rs1158169211 4824 dbSNP
rs1331919826 4831 dbSNP
rs1417440460 4832 dbSNP
rs1264394507 4838 dbSNP
rs1018972465 4850 dbSNP
rs947719627 4855 dbSNP
rs1005784490 4856 dbSNP
rs765639975 4858 dbSNP
rs1182706667 4859 dbSNP
rs529628467 4860 dbSNP
rs1403570108 4861 dbSNP
rs1056655867 4863 dbSNP
rs751384046 4870 dbSNP
rs1349390628 4873 dbSNP
rs759816665 4875 dbSNP
rs371870363 4891 dbSNP
rs1348940719 4892 dbSNP
rs1409590600 4894 dbSNP
rs1374131333 4896 dbSNP
rs993131781 4905 dbSNP
rs1352834955 4908 dbSNP
rs772977491 4914 dbSNP
rs1311327739 4922 dbSNP
rs573804523 4926 dbSNP
rs1223213621 4936 dbSNP
rs1272024907 4936 dbSNP
rs1482551602 4939 dbSNP
rs557048934 4939 dbSNP
rs1056200809 4942 dbSNP
rs192260008 4944 dbSNP
rs905011148 4948 dbSNP
rs1323013005 4951 dbSNP
rs1312727495 4953 dbSNP
rs1165617624 4964 dbSNP
rs985421064 4964 dbSNP
rs1429394471 4971 dbSNP
rs1308977625 4973 dbSNP
rs1372821598 4980 dbSNP
rs1446377618 4984 dbSNP
rs1302771080 4987 dbSNP
rs571255878 4989 dbSNP
rs1380601953 4994 dbSNP
rs1029730445 4995 dbSNP
rs1045408717 4997 dbSNP
rs956164132 4998 dbSNP
rs1276433777 5001 dbSNP
rs1030817156 5002 dbSNP
rs202047447 5006 dbSNP
rs1311495700 5007 dbSNP
rs1484225236 5008 dbSNP
rs903737527 5024 dbSNP
rs1388433819 5027 dbSNP
rs773881837 5031 dbSNP
rs1169481902 5040 dbSNP
rs768105985 5042 dbSNP
rs935294237 5054 dbSNP
rs922703103 5063 dbSNP
rs976792873 5064 dbSNP
rs1360218911 5065 dbSNP
rs766211277 5068 dbSNP
rs1317893950 5071 dbSNP
rs896162498 5074 dbSNP
rs1370337182 5080 dbSNP
rs1435285564 5086 dbSNP
rs1299360593 5091 dbSNP
rs558080097 5098 dbSNP
rs1342517100 5106 dbSNP
rs1056203083 5107 dbSNP
rs1279116258 5109 dbSNP
rs144648212 5114 dbSNP
rs1246206861 5118 dbSNP
rs1464494927 5121 dbSNP
rs896925630 5123 dbSNP
rs984814508 5135 dbSNP
rs953001366 5139 dbSNP
rs869277071 5143 dbSNP
rs941569066 5144 dbSNP
rs11370763 5146 dbSNP
rs397718521 5146 dbSNP
rs1026279244 5152 dbSNP
rs1388637770 5153 dbSNP
rs1488506396 5155 dbSNP
rs986141331 5165 dbSNP
rs993183732 5166 dbSNP
rs1203317671 5167 dbSNP
rs922566786 5173 dbSNP
rs1275171453 5174 dbSNP
rs534320605 5176 dbSNP
rs1226430771 5177 dbSNP
rs1267412296 5177 dbSNP
rs1265578017 5183 dbSNP
rs1329827479 5183 dbSNP
rs764887672 5185 dbSNP
rs1220159931 5187 dbSNP
rs956279736 5188 dbSNP
rs1198434861 5189 dbSNP
rs779408299 5189 dbSNP
rs779785069 5190 dbSNP
rs565930457 5191 dbSNP
rs1247586762 5195 dbSNP
rs756000994 5199 dbSNP
rs1180547011 5201 dbSNP
rs1319597285 5206 dbSNP
rs1473230719 5208 dbSNP
rs1033103260 5209 dbSNP
rs1003273560 5210 dbSNP
rs979251236 5216 dbSNP
rs1198089895 5218 dbSNP
rs1279736206 5219 dbSNP
rs1323816002 5219 dbSNP
rs905063024 5227 dbSNP
rs186662614 5230 dbSNP
rs1287534258 5231 dbSNP
rs1044895856 5237 dbSNP
rs1350989153 5240 dbSNP
rs1241121429 5245 dbSNP
rs1341540853 5262 dbSNP
rs967912233 5265 dbSNP
rs529006809 5266 dbSNP
rs1277893412 5268 dbSNP
rs1209383992 5269 dbSNP
rs1290847049 5273 dbSNP
rs7874099 5274 dbSNP
rs896415442 5275 dbSNP
rs1473177396 5279 dbSNP
rs1294233792 5281 dbSNP
rs1184619693 5283 dbSNP
rs1366136426 5284 dbSNP
rs1472176855 5285 dbSNP
rs1163382738 5286 dbSNP
rs1386673623 5286 dbSNP
rs1427455864 5289 dbSNP
rs893726215 5293 dbSNP
rs1370949774 5298 dbSNP
rs1052275364 5302 dbSNP
rs935364472 5303 dbSNP
rs993849076 5307 dbSNP
rs1457493640 5308 dbSNP
rs1392314062 5310 dbSNP
rs1339861044 5317 dbSNP
rs1244133818 5319 dbSNP
rs1173108647 5320 dbSNP
rs1315876280 5326 dbSNP
rs1478232227 5327 dbSNP
rs1361815224 5329 dbSNP
rs1226494587 5332 dbSNP
rs144399578 5335 dbSNP
rs1038126127 5336 dbSNP
rs1197997440 5340 dbSNP
rs1254658477 5357 dbSNP
rs183876198 5363 dbSNP
rs1187589580 5373 dbSNP
rs564912213 5381 dbSNP
rs1434888600 5385 dbSNP
rs1447220291 5386 dbSNP
rs1167572200 5397 dbSNP
rs11346837 5399 dbSNP
rs398010641 5399 dbSNP
rs1187207904 5400 dbSNP
rs199513075 5402 dbSNP
rs552088365 5410 dbSNP
rs984310499 5411 dbSNP
rs1049940506 5413 dbSNP
rs757586916 5422 dbSNP
rs1259370633 5425 dbSNP
rs1401375682 5427 dbSNP
rs1396572970 5429 dbSNP
rs1337420709 5431 dbSNP
rs528798845 5438 dbSNP
rs868794723 5453 dbSNP
rs146773987 5456 dbSNP
rs377556207 5456 dbSNP
rs755712652 5456 dbSNP
rs1316904179 5463 dbSNP
rs751786281 5465 dbSNP
rs918853620 5471 dbSNP
rs1230029282 5474 dbSNP
rs1254658797 5480 dbSNP
rs116064573 5487 dbSNP
rs1204879075 5495 dbSNP
rs764286806 5495 dbSNP
rs1302611685 5497 dbSNP
rs1187446781 5507 dbSNP
rs1248231999 5508 dbSNP
rs926024340 5511 dbSNP
rs1034681169 5514 dbSNP
rs1003327349 5516 dbSNP
rs969173243 5519 dbSNP
rs1386646293 5520 dbSNP
rs1023765577 5523 dbSNP
rs1386449335 5525 dbSNP
rs978863194 5526 dbSNP
rs1455701685 5527 dbSNP
rs34480472 5529 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55234.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggucggUUGAGUGUCACGUCu 5'
                  ::|| : ||||||| 
Target 5' -------aGGCU-GGAGUGCAGc 3'
 		1 - 15
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_018225 | 3UTR | CCAGGCUGGAGUGCAGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018225 | 3UTR | UUUUUUAAAAAGUUUUGCAGUCUUGUAAUUUACCUUUUUAAAAAAUUUAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018225 | 3UTR | AGUUUUGCAGUCUUGUAAUUUACCUUUUUAAAAAAUUUAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018225 | 3UTR | AAAAGUUUUGCAGUCUUGUAAUUUACCUUUUUAAAAAAUUUAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018225 | 3UTR | AUUUACCUUUUUAAAAAAUUUAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_018225 | 3UTR | UAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_018225 | 3UTR | AGUCUUGUAAUUUACCUUUUUAAAAAAUUUAUUUUAUUUUUCUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000397149.3 | 3UTR | AGGCUGGAGUGCAGCGGCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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