pre-miRNA Information
pre-miRNA hsa-mir-1185-1   
Genomic Coordinates chr14: 101042977 - 101043062
Synonyms MIRN1185-1, hsa-mir-1185-1, MIR1185-1
Description Homo sapiens miR-1185-1 stem-loop
Comment This sequence was proposed as a miRNA candidate by Berezikov et al by RAKE analysis .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1185-1-3p
Sequence 53| AUAUACAGGGGGAGACUCUUAU |74
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 14 + 101043033 29233923 MiREDiBase
A-to-I 7 14 + 101043035 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs749794228 1 dbSNP
rs369414498 4 dbSNP
rs771096180 5 dbSNP
rs774958411 7 dbSNP
rs1226171972 11 dbSNP
rs1449899083 14 dbSNP
rs761183893 16 dbSNP
rs1380874583 20 dbSNP
rs771625921 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KCNK10   
Synonyms K2p10.1, PPP1R97, TREK-2, TREK2
Description potassium two pore domain channel subfamily K member 10
Transcript NM_021161   
Other Transcripts NM_138317 , NM_138318   
Expression
Putative miRNA Targets on KCNK10
3'UTR of KCNK10
(miRNA target sites are highlighted)
>KCNK10|NM_021161|3'UTR
   1 ATGTGAAGGACATTGGTCTTGGACTGAGCGTTGTGTGTGTGTGTGTGTGTGTTTTTAATATTCACACTGAGACATGTGCC
  81 TTAAACAGACTTTTTAGTCCAAAATTACATAGCATTGAAGAATATATTTCACTGTGCCATAAACAACTGAAAGCTTGCTC
 161 TGCCAAAAGGAATCAGAGAACAAGAACTTCATTTCAGATAGCAAACGCAGGACACACCAAGAGTGTCCGTGCACGTAGCC
 241 GGTTCTGGCCGTACATGTTAAGGGCATTTCAGTGGCAGTGCTGTACCCCTGGGCAGTGCTACCTGGGCACACACGTAGAC
 321 AAGGGCAGCTATTCCTTAGACCAGCCTCCTGAAAGAAACAGGTGTGTCTTTTTAGTGGAGTCGTAGTAATATGTGCACAC
 401 ACAGAAGGGGACCTGATTGGGTGGGAGCTGGTTATGTGTAACTAGCGTTGGAGTTGACATTTTGGCATGTGCTCTGAGCT
 481 TGAATTTTGATACCAACCATTCAGTGCATCATACCTAGTCTTTCTATGCTCCAAATGAATGTCTGTGGGGACCTGAGAGC
 561 ACCTGGAATTTGTTGGAAGCAGATCAGAGCACACGTACGAAAAGGTGCAATTGCTTTTCTCATGACAAAAGAAAAAAAAT
 641 AATCACAAACACATCACACTGTGGATATCACCTTAACCAATGACAGAAGCCTGCTGAGTTTGGTCTTTCTCACAGGGGTA
 721 GGTAGTCCACATGAACTGGCGAGCAGTGGTGAAAACATGACATCAACTGCTGCGTGGTTAAAGGCCAATCATGCATTTTC
 801 CTCAGTGGGTGCAATGGTGACAATAAACTGATTTGGAAATGTCCATGTACTTTGGTTATAACTTGTTTTGATAAGAGGGG
 881 TAGAAATACCAAAACAATTGCCTTGCATGATGCCAGTGGCTTGCTGTTCTGTCTAGCTGATCCTACATTTTTACAAAAGT
 961 AGACATCCTGCATTTCTGAGACACACTGAGGAGGACCATGGCATCTTTCCATCTCAGGGCTTTTTGTCCCTTGGGTGTCT
1041 TAGGGTAGACATAGTGATAAGATCCAATCTCGCTATCTCCAAACAAAAAGAAAATGTACCCCTTGTACAGTAAGCTTGAA
1121 ATGTTTTTATTGCTTGCAGCGTAAGTGCCATTAATTCCATTTAACAATGATACTTAGAAATATTTAAAATATTTCATTTT
1201 ACTTTTATGTTTGGGCATTCCTTTATTCTGAAAAAGTCACCACTGCTCCTTGCTTGTTTCTACATCTCACATCGGTTACT
1281 CACTAAAACTGGAACACCCTAGACTGATTGTTCCCAGGCAAACGATAAGCTAACACATCATAATTATGATTGGTCTGTGA
1361 GGCTAGAACATCCCGCAGAGGAAAGTCGGGGAATGGCTAGTCATAGGTTGCATGATGATTTTAAATGGGTTTGTATCAGA
1441 AAGGGGAAAATACATACTCCTGTGTATGCCTCAGTCTTTATCATAATTGGCTGGTTCACAGCTAGCTCTTTGGGCCACAC
1521 GTGAAAGCATTTGGACCTGGCAACACCAGGCAGTTGCTGGTTATGGGTGTTCTAGGCTCACTGCTACCTTTTACAGAGTT
1601 CACGGGATTTTACGTAACTAACCCGCAGTGTGGATTTACCAAAAGATCACAGCACTAGCGGAGACTTCCAGAAACTGTCT
1681 CATGCTTTCTGACCTCCAGGGAAAGTTGTACCCACGACATCCTCAACCACTGGTACCATGGAAGACCTGTCCCTGCCCAT
1761 TTCTCAAAAATGCACAGCTCTTCCCTGCCTGGAGCACATGAAGTCCCATCTCCCTGTCCCCAGACCTTTAGGCTCTGTTG
1841 AAGTTCTGGCATTGCTTATGAGACCCTTCCTGTCCAAGGAAGGTCTAAGTCAACTCCTCCATTGGACTGGAGATGAGGCT
1921 CACTGGTGACATCCTGTGTCGACTCAGTAATAAATAGTCACTTGGGAGGCGATGTTTATGCAGGTGTGGATGTTGAGTTT
2001 TACTATGGGAATCATTCCAGCCTGACAAAATGTGTTTTAAGGAATAGGTAGATAACTGGGACTTCCTCTGTTATTCTAAC
2081 AAGTCGAAGCTTCCTAATTAAACTGTCCATGGATCTCACTTATTTGGTTTCCACTCTGTGTTATCTGGTACGTTCTTTGT
2161 AGCAGTGTGTTAAAATTCCAGGCCCTACGGCCAAATCTGGCAGAGGCTTCCCTCTCATTTATCCAGTGCCTTCTGTGGGC
2241 CAGGCACAGGATTAGGCACTTTATGAACGTCAGCTCATTGAAACTTCACGACACTATGTGGGAAGTATTTGCAAACCCAT
2321 TATATACACAAGGACACAGAGGCTCAGGGAAGCTATGTTATTTATCCAATGGCACACAGCAAGAAAGTGGTAGAGCTGGT
2401 ATTCAAAGTCTGACCAAAGTCTGCTTTCAACTTCACTACAGTGTCTGTGTCATGCATCCTTGTGATTGTGTGTGTTTGTG
2481 TGTATGTGTGTCTTTCTAGCTTCATGGACACAGCTTACAGATGTGGGGAGCAGATATGGTGGAATCTCCACCACCAAGAG
2561 GGCACAAGGTCTTTGTGTAAACATGGCTCAAAGGGTTGCCCCTGCAGACACCTACTGTACATTTATTTGGTTTTGGAAAT
2641 TTTGTATGTGGCACCCTTTAAAAAATGCCCTTTGAAAGCACTCTTTTGCACTTTACTTGCTAACTTTGTAGAAACTCTGC
2721 ATACAGCAGGAATAAAATAGTTCAAAGCACTAAGCTGCATACTCTACCAAATGGAACAGGTGCATGTGTTGGTATGTGCA
2801 TAGATGCTTCCCCAAATGAGTCAAATCAGTCACACAGAGGGATCAAACATAACCTTGGGCTGGGGGTGGGAAAATTTTCT
2881 ACATAACCCATTCCCTGAGACATTTGGCCAAGAATGTGATGAACAAAATCAAAGAAGATCCTCTATGGTGATTGATCGAT
2961 TAAATATGTGTGCAAAGTGTTTAGAAACCTATGAAATACTCTCGCAAAGATGCTGAGAGAGAATAAGAGGTTGGATTCCT
3041 CTTCATATAAACTAATTTTGGAGGAGGCCAGTTGGTTTGAAGTTACTTGAATGTTACCTTTTTTAGATGGGGCCAAATGG
3121 CATGTAGAATACACGTGATAGGTCAAAGCTGCTACACATTCTATACATGCATCAGCACAGCCCCCCCTTTCCAATCTGCA
3201 CTCCCATTCCAGCATAAACCTAGGAGAAATGTTTCGATTTCACACAAAGAAAGAGCACACGTCCACCATCTTCAGTGGGG
3281 GCTGTCTTTTGCTTCACTGGCAAGCAGGCACTGAATTTTTCTTGCATGACAAATCTGGAGGTTTACTGGTGAGAGAGCCA
3361 ATGGGCATTTTTTCCTGGAAAGAGTACAGCTCCATACCCAGTCCTAACCCAACAGTGATATTTATCACTTTGGGGCAGGG
3441 CTGTATAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGTTGGGGTGGTGTTGGGCC
3521 ATCTCTGGCCTGTTACTAAGGTAACTAGGACTATTTGTGTTCCAGCAGTCATAGCCTGTGATTGTGGGTGCATCAGTTCT
3601 CTGCCTAGATCTCTTGTTACCTTGTCTGCACATCAAGGGAGGGAGTTGAGCACAGATACTTGTCAAGGGCCATTGTAGTT
3681 GTGCAGTTCTCTAATGAAACACTCCCTAGTCCATGAGTTCACAAAATTTATTAAGATTAAATTATAAGTTGGATTTGTGA
3761 ATAATGACTAATTAATTGTCTTGCCCATTTTAGGTTAAGGTGAGAGCTTAGTCTCTTGCCCTTTGGGATTTGTCTTTTGG
3841 GGGATTAATGGAGACCAGATGTACTTGGGAGACTGGTGTCCAAATTCGGATCATGCCCTGTGTAGGCTCTCTCTATCCTC
3921 CCTTATAGCTCTTTAGTGTACTGTCACCGGGAGGGCTCATGCTGTGAGGGCATTTTTTGCATGGTGTTAAGACTAGTTAA
4001 AGAAATTTTAAGCTGTTGTTATTTGCAGTCAATTGTAGTACTTCATGTATCATGAATTCAAGTACTATGATCAGACAGAC
4081 ATCTCTCTCTCTCTCACACACACACACACACACACACACGCACACATACACACACACACACACACCTGAGGAAATGGCTG
4161 CTTTGGGTTCTATAAGGACCATTCCATGTTTAAAGTCCTAGTTGAGCTGAATGCTAAGAACCTGCCCCCTTGCCTCCCTC
4241 TGAGATGATATCATTTCCTGGCTTCGTCAATGCTGCCTGTCTATTTGCATGCTGGGTTCTGAGGACTAGTGAGAAGGTGA
4321 CCAGAGTTTGGGTGGGGCTGGTTTTTACCCACTGGATTTGGTGAGAATATGAAGCATCCAGTGTGTACCAGGGTTTCTGA
4401 ACCACGGGAAAGGCGTAGGAAAACAAACATTCAGAGCCCCTGTAAAACGAGAAAGGAAAAACCAGCCAGTGTTGCATTCC
4481 ACATCTCTGCTTGTTGCATTTTGCTAATATGGGGTTATTCTTTCTCACTGTTAGGATGCAATTGTGTGCAAAGACAGTGG
4561 CTGAGTGAACAGTAAGAGCTGGCTAGTAATGGCCTTAAAAAGAAAAAGGGTAACTCTCTGAAACAAAGATCACTTTAGTG
4641 TGGCATTGTGGATGCTGTTAATTCTGCATAGGGAAACTTTGGAACAGCATGCTAATTACATGGCTGTAAGCAAAGCCCTG
4721 TCCTCTGTCTCTGCACCATACCTTCATTGGACTTCACCAACCCATCCATACTCCATGTAAACCTCAGTTCTCTCATGCCT
4801 GCCCTAAGTCAGTTGACATCAGTGCAGTGGCATTGAGGAGAAATGAGAGGTGTCTCTGATTTTACTGAAAGTTATTATCA
4881 TTTTCACAGGTGCCTGAGATTTGGTATCTACTTTGTGTTCTTGATTCTTAGGTGAAAAATCTGAAATAGTTCCCTGTGCA
4961 TTAAAATAAATTATTTTGAGAGGACTCCTGCTCCGTCGATTCAGCAGACCTATGCTGCAGAAGGTAACTGCGGAAGCTCT
5041 CTTTTGCTGTCAGGGCTCTGAGCTTGAAGGGAGAAGGTGCAGTGGTGCCTAGAAGTGATATGCAAACCACCTCACATGCC
5121 AGCCTCTGGCCTCCTTCCCATCCCAGAGTCACAGACAGGGGACCCAGTGACAATGATGATAAATCCATGTGTGGAGGTGT
5201 TTTACTTATTTTTCTTTCCGTAGGATTTCATGGTGCTTTAAAAAAAAAGGCATTTTACAGAAAATAATGTGGGGGGAGGG
5281 AGATTTCATAATGTTCTTAGGGAAAGTACAAAACAAATTTGCTTGTGACATTTCAATAAGCTGTGCTGCTATTGTCTTTA
5361 TTTGATGATGTAATTTTTTTTTCAATGATGGAGAAAAATTGCAACAAAGACCTTCTGGAAGATCCAAAAAAAAAAAAAAA
5441 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uauuCUCAGAGGGGGACAUAUa 5'
              |: || : ||||||:|| 
Target 5' attcGGATCATGCCCTGTGTAg 3'
3884 - 3905 142.00 -14.30
2
miRNA  3' uaUUCUCAG-AGGGGGACAUAUa 5'
            || |  | | |:|||||:|| 
Target 5' ggAAAATACATACTCCTGTGTAt 3'
1445 - 1467 140.00 -14.40
3
miRNA  3' uauucucagaggggGACAUAUa 5'
                        ||||||| 
Target 5' actttggggcagggCTGTATAg 3'
3427 - 3448 140.00 -6.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30183478 9 COSMIC
COSN30130829 10 COSMIC
COSN26981061 30 COSMIC
COSN31561531 31 COSMIC
COSN5852814 31 COSMIC
COSN28186851 34 COSMIC
COSN18721814 53 COSMIC
COSN30155170 63 COSMIC
COSN31537957 69 COSMIC
COSN30167694 71 COSMIC
COSN31564023 76 COSMIC
COSN31499014 86 COSMIC
COSN31512331 91 COSMIC
COSN22297958 97 COSMIC
COSN30159890 117 COSMIC
COSN31547699 119 COSMIC
COSN31571897 120 COSMIC
COSN31510084 165 COSMIC
COSN31601489 178 COSMIC
COSN24304973 183 COSMIC
COSN31484946 195 COSMIC
COSN31769816 201 COSMIC
COSN31571881 235 COSMIC
COSN8460965 251 COSMIC
COSN26645564 328 COSMIC
COSN31567768 341 COSMIC
COSN31594532 382 COSMIC
COSN31596395 432 COSMIC
COSN31514112 503 COSMIC
COSN28783672 541 COSMIC
COSN31532123 554 COSMIC
COSN8460964 579 COSMIC
COSN29714649 600 COSMIC
COSN31959641 869 COSMIC
COSN29613628 1141 COSMIC
COSN26215466 1375 COSMIC
COSN31769815 1391 COSMIC
COSN5210835 1594 COSMIC
COSN15988979 2188 COSMIC
COSN2512229 2358 COSMIC
COSN6263739 2855 COSMIC
COSN20092871 2952 COSMIC
COSN20111570 3450 COSMIC
COSN23778952 3450 COSMIC
COSN15661864 3497 COSMIC
COSN8460963 3608 COSMIC
COSN22827149 3769 COSMIC
COSN16098994 3834 COSMIC
COSN20111564 4003 COSMIC
COSN29691108 4081 COSMIC
COSN23987507 4094 COSMIC
COSN20111560 4095 COSMIC
COSN20111561 4095 COSMIC
COSN20179747 4096 COSMIC
COSN15662981 4098 COSMIC
COSN29167427 4100 COSMIC
COSN15610208 4116 COSMIC
COSN15339437 4120 COSMIC
COSN20092868 4125 COSMIC
COSN20111558 4127 COSMIC
COSN16570158 4372 COSMIC
COSN8460962 4442 COSMIC
COSN15083325 4473 COSMIC
COSN22081520 4541 COSMIC
COSN1665561 4747 COSMIC
rs11848513 5111 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755158196 1 dbSNP
rs538390264 2 dbSNP
rs751896775 2 dbSNP
rs893220637 9 dbSNP
rs772312222 10 dbSNP
rs1407691031 12 dbSNP
rs747885302 13 dbSNP
rs1377399729 20 dbSNP
rs1039767531 23 dbSNP
rs566593518 24 dbSNP
rs370028801 25 dbSNP
rs773842237 29 dbSNP
rs375611228 30 dbSNP
rs758838071 33 dbSNP
rs751008961 34 dbSNP
rs1468934639 35 dbSNP
rs541020318 40 dbSNP
rs761459110 41 dbSNP
rs748829572 42 dbSNP
rs72261804 43 dbSNP
rs776252315 44 dbSNP
rs1382415575 45 dbSNP
rs779653022 47 dbSNP
rs907847509 48 dbSNP
rs763870157 49 dbSNP
rs756121715 51 dbSNP
rs1359690773 52 dbSNP
rs34143070 52 dbSNP
rs1227895705 53 dbSNP
rs1328328218 53 dbSNP
rs144490234 53 dbSNP
rs1491026191 53 dbSNP
rs368990725 53 dbSNP
rs570663912 53 dbSNP
rs952314116 53 dbSNP
rs1319461616 54 dbSNP
rs1201986922 55 dbSNP
rs1452984552 57 dbSNP
rs202237875 57 dbSNP
rs1472534885 59 dbSNP
rs1156380251 67 dbSNP
rs1365017763 74 dbSNP
rs1454053240 76 dbSNP
rs1162288053 89 dbSNP
rs757939079 90 dbSNP
rs763594186 91 dbSNP
rs1303487703 92 dbSNP
rs918813195 95 dbSNP
rs111260296 98 dbSNP
rs1349835527 101 dbSNP
rs752080481 104 dbSNP
rs1173563146 105 dbSNP
rs370516178 112 dbSNP
rs962382470 117 dbSNP
rs1377492817 119 dbSNP
rs1318803929 120 dbSNP
rs1023831051 134 dbSNP
rs188906674 135 dbSNP
rs960564643 138 dbSNP
rs1430647620 143 dbSNP
rs1357504568 146 dbSNP
rs757929004 147 dbSNP
rs1225239589 150 dbSNP
rs1270023933 152 dbSNP
rs1483049567 162 dbSNP
rs1175984165 181 dbSNP
rs1253204560 187 dbSNP
rs531074189 198 dbSNP
rs1034815110 199 dbSNP
rs1388758903 201 dbSNP
rs1186164303 202 dbSNP
rs1188130707 206 dbSNP
rs1383034717 206 dbSNP
rs1007895569 207 dbSNP
rs999273136 209 dbSNP
rs902435169 213 dbSNP
rs1461912905 224 dbSNP
rs568680701 226 dbSNP
rs1052083716 227 dbSNP
rs1198746366 228 dbSNP
rs1012007910 229 dbSNP
rs754733205 234 dbSNP
rs1040220818 235 dbSNP
rs942753944 240 dbSNP
rs891178192 241 dbSNP
rs1248433102 246 dbSNP
rs1293044175 248 dbSNP
rs111930512 250 dbSNP
rs1056575690 251 dbSNP
rs1253618103 255 dbSNP
rs940732467 276 dbSNP
rs1180815014 283 dbSNP
rs1246463135 288 dbSNP
rs907892586 289 dbSNP
rs984798357 291 dbSNP
rs1183812358 293 dbSNP
rs762047573 303 dbSNP
rs918853367 305 dbSNP
rs528461406 314 dbSNP
rs565835610 315 dbSNP
rs1465467820 317 dbSNP
rs941055018 328 dbSNP
rs1396661853 340 dbSNP
rs546317175 341 dbSNP
rs1403998459 343 dbSNP
rs916242307 358 dbSNP
rs990571322 361 dbSNP
rs1316011495 362 dbSNP
rs1019039259 373 dbSNP
rs1213211805 378 dbSNP
rs752142029 380 dbSNP
rs1007949536 382 dbSNP
rs182785147 383 dbSNP
rs1462269191 385 dbSNP
rs1034696696 390 dbSNP
rs977905586 391 dbSNP
rs1369278371 392 dbSNP
rs1168301396 400 dbSNP
rs1203677555 403 dbSNP
rs563435985 417 dbSNP
rs1484673698 423 dbSNP
rs1445635021 433 dbSNP
rs1419952478 434 dbSNP
rs151099305 437 dbSNP
rs142911523 443 dbSNP
rs1431275799 446 dbSNP
rs113179747 447 dbSNP
rs1337425612 450 dbSNP
rs1012142158 453 dbSNP
rs957633830 459 dbSNP
rs1428862960 468 dbSNP
rs541355678 488 dbSNP
rs1223206674 493 dbSNP
rs1018284236 496 dbSNP
rs1056294445 497 dbSNP
rs1006862578 498 dbSNP
rs891230277 507 dbSNP
rs1051157600 508 dbSNP
rs940786319 511 dbSNP
rs994767855 512 dbSNP
rs1444985879 526 dbSNP
rs768783458 528 dbSNP
rs1217494546 535 dbSNP
rs907946149 541 dbSNP
rs897310442 556 dbSNP
rs1039062815 559 dbSNP
rs1196958054 563 dbSNP
rs1270998950 575 dbSNP
rs1480704610 580 dbSNP
rs773372263 584 dbSNP
rs1049569840 590 dbSNP
rs1273840939 591 dbSNP
rs1173283266 595 dbSNP
rs1222863636 598 dbSNP
rs1361409424 599 dbSNP
rs941620563 604 dbSNP
rs916780538 610 dbSNP
rs1243672497 627 dbSNP
rs376139067 630 dbSNP
rs557748320 637 dbSNP
rs1054725957 640 dbSNP
rs545999632 640 dbSNP
rs1347992942 641 dbSNP
rs974976348 646 dbSNP
rs1278515163 649 dbSNP
rs1347930667 650 dbSNP
rs1369186263 652 dbSNP
rs938990009 658 dbSNP
rs1284548227 665 dbSNP
rs1307968013 676 dbSNP
rs1358237985 679 dbSNP
rs927734172 680 dbSNP
rs575130595 689 dbSNP
rs1490509574 696 dbSNP
rs966974532 710 dbSNP
rs558130132 720 dbSNP
rs1468675541 732 dbSNP
rs1178970319 734 dbSNP
rs762224885 740 dbSNP
rs956488305 741 dbSNP
rs1367847119 744 dbSNP
rs964667171 749 dbSNP
rs1328791710 752 dbSNP
rs1017505997 757 dbSNP
rs1006914993 759 dbSNP
rs558277892 761 dbSNP
rs764445359 765 dbSNP
rs1200129178 769 dbSNP
rs113652410 770 dbSNP
rs994257545 773 dbSNP
rs1293756721 774 dbSNP
rs979558332 776 dbSNP
rs1194953787 783 dbSNP
rs1270820393 787 dbSNP
rs1287515710 788 dbSNP
rs538729762 790 dbSNP
rs1206779832 791 dbSNP
rs1238855601 803 dbSNP
rs549964564 806 dbSNP
rs1181986697 814 dbSNP
rs1387252618 816 dbSNP
rs1350880047 822 dbSNP
rs1473343185 823 dbSNP
rs1262136773 824 dbSNP
rs1225972167 825 dbSNP
rs1349412804 835 dbSNP
rs775493127 840 dbSNP
rs1395019085 844 dbSNP
rs537224599 845 dbSNP
rs566618879 847 dbSNP
rs568673821 855 dbSNP
rs1404717642 858 dbSNP
rs1406148989 862 dbSNP
rs117598232 864 dbSNP
rs528828273 870 dbSNP
rs411627 873 dbSNP
rs896393349 876 dbSNP
rs1226459206 881 dbSNP
rs939042247 883 dbSNP
rs1385852359 884 dbSNP
rs1034888202 885 dbSNP
rs1004717888 892 dbSNP
rs776795508 897 dbSNP
rs1042564981 900 dbSNP
rs552615536 902 dbSNP
rs1201799891 906 dbSNP
rs1245238215 907 dbSNP
rs945142926 909 dbSNP
rs1443185980 910 dbSNP
rs930691025 913 dbSNP
rs1371686018 927 dbSNP
rs1476712448 937 dbSNP
rs1247320154 938 dbSNP
rs900516322 946 dbSNP
rs532618485 947 dbSNP
rs989343498 951 dbSNP
rs964879370 952 dbSNP
rs910495485 956 dbSNP
rs17124199 961 dbSNP
rs1263407223 964 dbSNP
rs1316046178 969 dbSNP
rs1206499463 972 dbSNP
rs1327845965 975 dbSNP
rs1282587114 984 dbSNP
rs190955547 995 dbSNP
rs1263267189 998 dbSNP
rs770735651 1001 dbSNP
rs543965267 1003 dbSNP
rs988977147 1012 dbSNP
rs934853980 1014 dbSNP
rs1029669302 1019 dbSNP
rs1204766744 1026 dbSNP
rs1259833602 1028 dbSNP
rs1449107078 1041 dbSNP
rs1194774774 1052 dbSNP
rs973106789 1053 dbSNP
rs961494664 1054 dbSNP
rs1017403879 1061 dbSNP
rs529838037 1063 dbSNP
rs1178043321 1066 dbSNP
rs188088273 1071 dbSNP
rs540919362 1075 dbSNP
rs772181533 1091 dbSNP
rs968184752 1097 dbSNP
rs1386619190 1110 dbSNP
rs895298145 1113 dbSNP
rs572314206 1115 dbSNP
rs1302271154 1123 dbSNP
rs1406680490 1136 dbSNP
rs552784809 1137 dbSNP
rs1034939154 1140 dbSNP
rs777769835 1141 dbSNP
rs1353060750 1143 dbSNP
rs1291469215 1145 dbSNP
rs1490022923 1149 dbSNP
rs1202235825 1159 dbSNP
rs1471005184 1161 dbSNP
rs1268603731 1162 dbSNP
rs1422893795 1166 dbSNP
rs112174946 1177 dbSNP
rs758333034 1186 dbSNP
rs1042057250 1196 dbSNP
rs1178997367 1198 dbSNP
rs1365224834 1207 dbSNP
rs1475612652 1209 dbSNP
rs1419907896 1215 dbSNP
rs748321172 1226 dbSNP
rs11159843 1235 dbSNP
rs1363480657 1253 dbSNP
rs1426242964 1261 dbSNP
rs544624800 1262 dbSNP
rs893575889 1271 dbSNP
rs1186249381 1272 dbSNP
rs886285536 1274 dbSNP
rs1379453868 1282 dbSNP
rs1464133345 1285 dbSNP
rs1241147143 1290 dbSNP
rs1053928516 1293 dbSNP
rs1314551695 1295 dbSNP
rs182570286 1296 dbSNP
rs910381980 1297 dbSNP
rs1204940011 1298 dbSNP
rs147900877 1299 dbSNP
rs1277100479 1307 dbSNP
rs933228175 1314 dbSNP
rs1039043944 1316 dbSNP
rs919143049 1323 dbSNP
rs972770561 1324 dbSNP
rs961650125 1330 dbSNP
rs1382943261 1334 dbSNP
rs890415697 1337 dbSNP
rs1353895641 1349 dbSNP
rs1053313081 1353 dbSNP
rs1296580274 1357 dbSNP
rs536387984 1359 dbSNP
rs1364654752 1363 dbSNP
rs568558821 1373 dbSNP
rs934884233 1374 dbSNP
rs984596555 1375 dbSNP
rs1230427292 1377 dbSNP
rs1316000607 1383 dbSNP
rs1313855980 1386 dbSNP
rs1307482901 1387 dbSNP
rs144678478 1388 dbSNP
rs1033807062 1390 dbSNP
rs1457832201 1393 dbSNP
rs1043604644 1395 dbSNP
rs1240921765 1399 dbSNP
rs1462350634 1405 dbSNP
rs534969309 1407 dbSNP
rs1418508433 1412 dbSNP
rs1426452305 1425 dbSNP
rs906800665 1429 dbSNP
rs1424195716 1433 dbSNP
rs753571808 1439 dbSNP
rs867232051 1444 dbSNP
rs1410506466 1451 dbSNP
rs766077272 1454 dbSNP
rs566381645 1457 dbSNP
rs1175762431 1459 dbSNP
rs1404249467 1469 dbSNP
rs1450451117 1470 dbSNP
rs749843696 1480 dbSNP
rs1303863384 1483 dbSNP
rs1361700821 1486 dbSNP
rs1166434106 1489 dbSNP
rs1280675840 1497 dbSNP
rs1448644739 1501 dbSNP
rs1385464211 1502 dbSNP
rs1185110504 1506 dbSNP
rs1471509312 1507 dbSNP
rs552579343 1514 dbSNP
rs190372047 1520 dbSNP
rs570104095 1521 dbSNP
rs751939619 1528 dbSNP
rs1053575672 1531 dbSNP
rs1195528286 1537 dbSNP
rs943098934 1551 dbSNP
rs927583088 1552 dbSNP
rs764508319 1554 dbSNP
rs140715033 1563 dbSNP
rs1427286429 1584 dbSNP
rs114387190 1588 dbSNP
rs995069764 1595 dbSNP
rs1341982263 1597 dbSNP
rs933113492 1602 dbSNP
rs541043598 1603 dbSNP
rs1341728422 1604 dbSNP
rs972370856 1612 dbSNP
rs560876626 1613 dbSNP
rs909864376 1614 dbSNP
rs1008909596 1622 dbSNP
rs1314736755 1623 dbSNP
rs1218581607 1624 dbSNP
rs746015982 1625 dbSNP
rs1490185733 1637 dbSNP
rs765332034 1639 dbSNP
rs547584510 1640 dbSNP
rs759564285 1641 dbSNP
rs982263971 1642 dbSNP
rs1479060039 1651 dbSNP
rs527563493 1658 dbSNP
rs185960468 1659 dbSNP
rs544935128 1660 dbSNP
rs144217248 1663 dbSNP
rs1043271160 1666 dbSNP
rs948905098 1668 dbSNP
rs1021236791 1673 dbSNP
rs1054892150 1678 dbSNP
rs1301865908 1679 dbSNP
rs1403201530 1679 dbSNP
rs1412646666 1688 dbSNP
rs1352087129 1698 dbSNP
rs1010226487 1705 dbSNP
rs771074924 1711 dbSNP
rs562192990 1715 dbSNP
rs950697108 1716 dbSNP
rs1007201291 1718 dbSNP
rs181634080 1736 dbSNP
rs1051486175 1738 dbSNP
rs1180720983 1740 dbSNP
rs973305757 1751 dbSNP
rs149749127 1753 dbSNP
rs1219912001 1755 dbSNP
rs997371654 1759 dbSNP
rs1482921964 1760 dbSNP
rs1452077250 1774 dbSNP
rs1017368310 1777 dbSNP
rs1232354639 1779 dbSNP
rs1438134928 1780 dbSNP
rs372583970 1789 dbSNP
rs954780483 1798 dbSNP
rs1224283304 1813 dbSNP
rs1161797243 1819 dbSNP
rs1320094960 1829 dbSNP
rs1416655370 1840 dbSNP
rs1289452065 1843 dbSNP
rs139611920 1850 dbSNP
rs941938282 1857 dbSNP
rs1352265332 1863 dbSNP
rs909089735 1865 dbSNP
rs1048389873 1866 dbSNP
rs772937886 1878 dbSNP
rs1448277972 1881 dbSNP
rs1331638957 1887 dbSNP
rs1331379462 1892 dbSNP
rs1286352916 1893 dbSNP
rs535244473 1896 dbSNP
rs1409174930 1901 dbSNP
rs530877921 1902 dbSNP
rs771875317 1907 dbSNP
rs572707836 1911 dbSNP
rs559282308 1915 dbSNP
rs937984580 1919 dbSNP
rs150575375 1921 dbSNP
rs866909955 1930 dbSNP
rs570014992 1931 dbSNP
rs914054643 1936 dbSNP
rs988289989 1939 dbSNP
rs192229349 1940 dbSNP
rs116662949 1945 dbSNP
rs1167860947 1947 dbSNP
rs567768980 1953 dbSNP
rs1422050302 1955 dbSNP
rs547601817 1961 dbSNP
rs1170734482 1963 dbSNP
rs369259314 1964 dbSNP
rs1458346194 1966 dbSNP
rs879561950 1970 dbSNP
rs1409192971 1973 dbSNP
rs1157551284 1977 dbSNP
rs187384524 1990 dbSNP
rs1030112043 1995 dbSNP
rs1429691382 1996 dbSNP
rs1013141782 1997 dbSNP
rs1268364273 2003 dbSNP
rs564780060 2005 dbSNP
rs3559 2006 dbSNP
rs897695586 2011 dbSNP
rs1323184850 2013 dbSNP
rs939110575 2026 dbSNP
rs906273654 2046 dbSNP
rs561714230 2048 dbSNP
rs1192871092 2057 dbSNP
rs1261702247 2058 dbSNP
rs928966762 2067 dbSNP
rs920239096 2070 dbSNP
rs1216831413 2073 dbSNP
rs973746920 2074 dbSNP
rs943271211 2077 dbSNP
rs1266270529 2078 dbSNP
rs910415682 2080 dbSNP
rs1006018448 2085 dbSNP
rs1227884015 2103 dbSNP
rs531505816 2111 dbSNP
rs887704202 2114 dbSNP
rs142556656 2119 dbSNP
rs938042127 2123 dbSNP
rs379643 2125 dbSNP
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rs969138243 2140 dbSNP
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rs977514752 4594 dbSNP
rs1311145203 4598 dbSNP
rs1396108880 4602 dbSNP
rs905606258 4603 dbSNP
rs968359421 4605 dbSNP
rs1337892641 4607 dbSNP
rs1021417679 4608 dbSNP
rs949762688 4610 dbSNP
rs1347786387 4614 dbSNP
rs1209274302 4620 dbSNP
rs916895745 4623 dbSNP
rs1442439571 4629 dbSNP
rs1192061740 4630 dbSNP
rs76389835 4633 dbSNP
rs996594260 4640 dbSNP
rs973080688 4648 dbSNP
rs544256440 4651 dbSNP
rs1476300415 4653 dbSNP
rs1188956523 4656 dbSNP
rs11849425 4657 dbSNP
rs1019876406 4660 dbSNP
rs909748646 4668 dbSNP
rs1169649212 4676 dbSNP
rs1431819911 4688 dbSNP
rs983912120 4692 dbSNP
rs749823484 4701 dbSNP
rs1324894588 4705 dbSNP
rs887044976 4711 dbSNP
rs867357633 4717 dbSNP
rs1298803066 4724 dbSNP
rs1169759109 4728 dbSNP
rs954167588 4729 dbSNP
rs528542466 4738 dbSNP
rs555507779 4747 dbSNP
rs1345156323 4752 dbSNP
rs929339161 4756 dbSNP
rs1185764274 4758 dbSNP
rs3742693 4765 dbSNP
rs750447017 4776 dbSNP
rs1252210468 4782 dbSNP
rs1208896509 4785 dbSNP
rs1207068881 4794 dbSNP
rs1252165843 4802 dbSNP
rs1195456989 4803 dbSNP
rs1020935420 4816 dbSNP
rs1037790786 4827 dbSNP
rs1158062252 4833 dbSNP
rs1336966473 4838 dbSNP
rs573026363 4842 dbSNP
rs948809915 4843 dbSNP
rs190026121 4850 dbSNP
rs1250424247 4859 dbSNP
rs915968704 4871 dbSNP
rs411418 4873 dbSNP
rs1394239604 4880 dbSNP
rs1323042485 4888 dbSNP
rs369638548 4892 dbSNP
rs924885165 4904 dbSNP
rs138325572 4908 dbSNP
rs550605109 4911 dbSNP
rs1228651980 4915 dbSNP
rs1044183693 4918 dbSNP
rs1467003238 4920 dbSNP
rs867475857 4921 dbSNP
rs757552955 4931 dbSNP
rs545594784 4935 dbSNP
rs1215311488 4936 dbSNP
rs949808087 4941 dbSNP
rs1308944394 4946 dbSNP
rs1412083685 4949 dbSNP
rs1437165816 4950 dbSNP
rs35750607 4955 dbSNP
rs1394590429 4957 dbSNP
rs1021301127 4962 dbSNP
rs1179498665 4965 dbSNP
rs975039508 4968 dbSNP
rs1161992113 4986 dbSNP
rs963803377 4994 dbSNP
rs867283866 4995 dbSNP
rs1008504282 4997 dbSNP
rs150466905 5000 dbSNP
rs751802842 5009 dbSNP
rs1391342016 5012 dbSNP
rs1784801 5013 dbSNP
rs187151511 5023 dbSNP
rs529451399 5025 dbSNP
rs932499155 5029 dbSNP
rs182857150 5031 dbSNP
rs1332204133 5032 dbSNP
rs1246445394 5037 dbSNP
rs1265822750 5039 dbSNP
rs1184003821 5041 dbSNP
rs1037674334 5047 dbSNP
rs965477543 5051 dbSNP
rs1631092 5052 dbSNP
rs141760200 5063 dbSNP
rs775581652 5088 dbSNP
rs564102498 5089 dbSNP
rs1057204005 5091 dbSNP
rs1167113869 5092 dbSNP
rs1210120288 5093 dbSNP
rs1032604871 5094 dbSNP
rs1461762930 5097 dbSNP
rs1002430328 5100 dbSNP
rs969564835 5102 dbSNP
rs765155326 5109 dbSNP
rs1311748078 5110 dbSNP
rs11848513 5111 dbSNP
rs558770689 5112 dbSNP
rs1014451165 5119 dbSNP
rs1325677264 5120 dbSNP
rs1212527184 5124 dbSNP
rs1276756601 5125 dbSNP
rs924799797 5130 dbSNP
rs895560202 5131 dbSNP
rs147916910 5140 dbSNP
rs1484706083 5142 dbSNP
rs977545008 5143 dbSNP
rs1037145086 5147 dbSNP
rs1003837316 5149 dbSNP
rs888084632 5152 dbSNP
rs562024446 5155 dbSNP
rs1430966288 5163 dbSNP
rs947623998 5165 dbSNP
rs1289591269 5175 dbSNP
rs932551482 5177 dbSNP
rs914801254 5199 dbSNP
rs1462395444 5200 dbSNP
rs759386020 5203 dbSNP
rs541807700 5204 dbSNP
rs776263005 5219 dbSNP
rs3742696 5220 dbSNP
rs1299554380 5223 dbSNP
rs572948627 5231 dbSNP
rs944157340 5239 dbSNP
rs963730806 5240 dbSNP
rs1310559683 5243 dbSNP
rs1212309090 5245 dbSNP
rs199849620 5249 dbSNP
rs988594114 5249 dbSNP
rs1323890754 5257 dbSNP
rs61741273 5267 dbSNP
rs986561027 5268 dbSNP
rs1389267664 5271 dbSNP
rs546080438 5271 dbSNP
rs1161338952 5280 dbSNP
rs114415031 5284 dbSNP
rs1344022541 5285 dbSNP
rs1451196927 5286 dbSNP
rs1025599681 5302 dbSNP
rs995266756 5306 dbSNP
rs1362964124 5315 dbSNP
rs769028480 5316 dbSNP
rs1434475744 5317 dbSNP
rs1013752079 5323 dbSNP
rs374001884 5325 dbSNP
rs962619376 5328 dbSNP
rs749591793 5336 dbSNP
rs1221081982 5340 dbSNP
rs1212509348 5347 dbSNP
rs1465010969 5368 dbSNP
rs1023488633 5371 dbSNP
rs1015351552 5372 dbSNP
rs962483508 5372 dbSNP
rs1270214028 5373 dbSNP
rs1003894509 5383 dbSNP
rs1048035812 5383 dbSNP
rs1489755505 5383 dbSNP
rs888135354 5383 dbSNP
rs1192226717 5385 dbSNP
rs1406640588 5388 dbSNP
rs1012898665 5390 dbSNP
rs1412223682 5391 dbSNP
rs1460781007 5403 dbSNP
rs1207461064 5409 dbSNP
rs1351337145 5412 dbSNP
rs1349190263 5416 dbSNP
rs574657691 5421 dbSNP
rs1057472145 5425 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 54207.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uauUCUCAGAGGGGGACAUAUa 5'
             ||||| | : : |||:|: 
Target 5' ---AGAGUGUGUGUGUGUGUGu 3'
1 - 19
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084075. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202476. RNA binding protein: AGO2. Condition:S1_LV_54yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
Experimental Support 5 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Liver Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2550621. RNA binding protein: AGO2. Condition:Patient 2 Tumor 2 HITS-CLIP data was present in GSM2550618. RNA binding protein: AGO2. Condition:Patient 1 Tumor 1 ...

- Luna JM; Barajas JM; Teng KY; Sun HL; Moore et al., 2017, Molecular cell.

Article - Luna JM; Barajas JM; Teng KY; Sun HL; Moore et al.
- Molecular cell, 2017
MicroRNA-122, an abundant and conserved liver-specific miRNA, regulates hepatic metabolism and functions as a tumor suppressor, yet systematic and direct biochemical elucidation of the miR-122 target network remains incomplete. To this end, we performed Argonaute crosslinking immunoprecipitation (Argonaute [Ago]-CLIP) sequencing in miR-122 knockout and control mouse livers, as well as in matched human hepatocellular carcinoma (HCC) and benign liver tissue to identify miRNA target sites transcriptome-wide in two species. We observed a majority of miR-122 binding on 3' UTRs and coding exons followed by extensive binding to other genic and non-genic sites. Motif analysis of miR-122-dependent binding revealed a G-bulged motif in addition to canonical motifs. A large number of miR-122 targets were found to be species specific. Upregulation of several common mouse and human targets, most notably BCL9, predicted survival in HCC patients. These results broadly define the molecular consequences of miR-122 downregulation in hepatocellular carcinoma.
LinkOut: [PMID: 28735896]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000340700.5 | 3UTR | AGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGGGUUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000340700.5 | 3UTR | GUAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000340700.5 | 3UTR | GUAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | GUAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000340700.5 | 3UTR | AUAGAGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 14 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 15 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 16 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 17 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 18 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 19 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 20 for dataset GSM1084075
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SantaCruzAb
Location of target site ENST00000340700.5 | 3UTR | UAGAGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 21 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 22 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 23 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 24 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000340700.5 | 3UTR | CUUUGGGGCAGGGCUGUAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 25 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000340700.5 | 3UTR | AUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 26 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | GUAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 27 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000340700.5 | 3UTR | UAUAGAGUGUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 28 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000340700.5 | 3UTR | AGAGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
114 hsa-miR-1185-1-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066415 TBK1 TANK binding kinase 1 2 4
MIRT073567 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT074516 USP1 ubiquitin specific peptidase 1 2 4
MIRT080576 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT086539 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT086547 MOB4 MOB family member 4, phocein 2 2
MIRT088684 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT090811 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT095500 PURA purine rich element binding protein A 2 2
MIRT109530 KLHL15 kelch like family member 15 2 6
MIRT109807 ZFX zinc finger protein, X-linked 2 2
MIRT117888 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT120273 GSK3B glycogen synthase kinase 3 beta 2 4
MIRT149892 LDLR low density lipoprotein receptor 2 2
MIRT178475 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT193445 RORA RAR related orphan receptor A 2 2
MIRT198527 DSG2 desmoglein 2 2 2
MIRT226427 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT227669 SET SET nuclear proto-oncogene 2 2
MIRT320405 HOXA9 homeobox A9 2 2
MIRT407774 MRPL35 mitochondrial ribosomal protein L35 2 2
MIRT439228 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT439312 VAT1L vesicle amine transport 1 like 1 1
MIRT439421 TMOD1 tropomodulin 1 1 1
MIRT439446 TMEM104 transmembrane protein 104 1 1
MIRT439524 STIM2 stromal interaction molecule 2 1 1
MIRT439612 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 1 1
MIRT439997 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 1 1
MIRT440017 PCSK1 proprotein convertase subtilisin/kexin type 1 1 1
MIRT440131 NCOA4 nuclear receptor coactivator 4 1 1
MIRT440311 LRRC1 leucine rich repeat containing 1 1 1
MIRT440475 IAPP islet amyloid polypeptide 1 1
MIRT440511 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 1 1
MIRT440617 FOXA2 forkhead box A2 1 1
MIRT440666 FBXL16 F-box and leucine rich repeat protein 16 1 1
MIRT440705 ERO1LB endoplasmic reticulum oxidoreductase 1 beta 1 1
MIRT441007 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 1 1
MIRT441018 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT441062 C1orf43 chromosome 1 open reading frame 43 1 1
MIRT441209 ARCN1 archain 1 1 1
MIRT449461 HAT1 histone acetyltransferase 1 2 2
MIRT467104 SRI sorcin 2 2
MIRT468060 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 10
MIRT468476 SESN3 sestrin 3 2 4
MIRT473533 MAX MYC associated factor X 2 2
MIRT473852 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474711 KIF13A kinesin family member 13A 2 6
MIRT481665 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT485120 SF3B3 splicing factor 3b subunit 3 2 2
MIRT493055 MTFR1 mitochondrial fission regulator 1 2 2
MIRT504258 C1orf147 chromosome 1 open reading frame 147 2 4
MIRT504361 ARID1B AT-rich interaction domain 1B 2 4
MIRT505748 SENP1 SUMO1/sentrin specific peptidase 1 2 8
MIRT506298 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 6
MIRT508442 ZNF608 zinc finger protein 608 2 4
MIRT512782 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT520447 TSPAN2 tetraspanin 2 2 4
MIRT522133 NRBF2 nuclear receptor binding factor 2 2 6
MIRT522395 MYADM myeloid associated differentiation marker 2 4
MIRT523397 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 4
MIRT523938 E2F8 E2F transcription factor 8 2 4
MIRT524349 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524711 BRMS1L breast cancer metastasis-suppressor 1 like 2 4
MIRT525134 ZNF256 zinc finger protein 256 2 2
MIRT525710 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 2 2
MIRT531264 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT538844 BTG1 BTG anti-proliferation factor 1 2 2
MIRT541366 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT542093 KCNK10 potassium two pore domain channel subfamily K member 10 2 6
MIRT543770 RBM12B RNA binding motif protein 12B 2 4
MIRT543940 NCOA7 nuclear receptor coactivator 7 2 2
MIRT545150 GABRG1 gamma-aminobutyric acid type A receptor gamma1 subunit 2 2
MIRT545842 ZNF264 zinc finger protein 264 2 4
MIRT548057 GOLGA7 golgin A7 2 2
MIRT549242 ATXN1L ataxin 1 like 2 4
MIRT551829 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT552484 ZNF136 zinc finger protein 136 2 2
MIRT553663 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT554988 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555760 PCTP phosphatidylcholine transfer protein 2 2
MIRT556923 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT564991 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT566458 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT566538 PANK3 pantothenate kinase 3 2 2
MIRT567732 DLX2 distal-less homeobox 2 2 2
MIRT570081 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 2
MIRT571735 RNF11 ring finger protein 11 2 2
MIRT573529 MDM2 MDM2 proto-oncogene 2 2
MIRT574459 RPS16 ribosomal protein S16 2 2
MIRT574992 Phka1 phosphorylase kinase alpha 1 2 3
MIRT576349 Pxdn peroxidasin 2 2
MIRT610196 CD99 CD99 molecule (Xg blood group) 2 4
MIRT612920 GPRIN3 GPRIN family member 3 2 2
MIRT615021 DUSP6 dual specificity phosphatase 6 2 2
MIRT623573 IRS1 insulin receptor substrate 1 2 2
MIRT624437 CASD1 CAS1 domain containing 1 2 2
MIRT628714 ZNF585A zinc finger protein 585A 2 2
MIRT639565 PCK1 phosphoenolpyruvate carboxykinase 1 2 4
MIRT641485 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT641657 PAPOLG poly(A) polymerase gamma 2 2
MIRT642210 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT653010 STX7 syntaxin 7 2 2
MIRT656130 MSH6 mutS homolog 6 2 2
MIRT656893 KIAA2018 upstream transcription factor family member 3 2 2
MIRT660130 BRPF3 bromodomain and PHD finger containing 3 2 2
MIRT660855 AFAP1 actin filament associated protein 1 2 2
MIRT676843 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 3
MIRT681473 DIP2A disco interacting protein 2 homolog A 2 2
MIRT682253 RS1 retinoschisin 1 2 2
MIRT694296 COPB2 coatomer protein complex subunit beta 2 2 2
MIRT694401 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT705277 BACH1 BTB domain and CNC homolog 1 2 2
MIRT720833 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT735713 SIRT1 sirtuin 1 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-1185-1-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1185-1-3p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1185-1-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (TOV-112D)

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