pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KNSTRN   
Synonyms C15orf23, HSD11, SKAP, TRAF4AF1
Description kinetochore localized astrin/SPAG5 binding protein
Transcript NM_001142761   
Other Transcripts NM_001142762 , NM_033286   
Expression
Putative miRNA Targets on KNSTRN
3'UTR of KNSTRN
(miRNA target sites are highlighted)
>KNSTRN|NM_001142761|3'UTR
   1 AGGATTTCATCGTTCCAGTTTAGATACAGGAGTCTAGTCCCTCTCTACTACTAGAGGGACAATTCCTAAAACCAGTGCAT
  81 AGAAATAAAATCTAAAATAGAAGATACAGTCTGTTGATACTCCAGTGGTCTTCCTTAGTGGAATAGGAGCATAATGTTCT
 161 GATGTGGGAATTGTGTTTCCTGTTAGTCAAGAGTTTTGTGTATGTGTTGTTTTCTTTTGGAATGTCTTTCCATGCAGGCC
 241 TTAAAGGTAAAGCTGGAGATGAAAGAGGAAAGAGTCCGATTCCTAGAACAGCAAACCTTATGTAACAATCAAGTAAATGA
 321 TTTAACAACAGCCCTTAAGGAAATGGAGCAGCTATTAGAAATGTAAGAAGAAGCAAGTGGCCAGATGGCTCCCTCTTGGG
 401 CATAAAATCTCAGAGGAAGCTACTTAGGACATCATCTTGGCCATGATCTTCTGGGACTCACCATCTCCAGAATGAAAACA
 481 ATTTCTACAGTAGACTTAAGGACAGTTTATGCTGAAATGGCAATTCCTCATTTAAGCAAGTTTTCCCAACCTTCAGGTTG
 561 GTCAGCCCTCCTGAGCCTCACAGGTGGATAATTGAGGCCTACAAGAGAGGGGAGCCTAGGAGCTTGGATTGACCTTCTAG
 641 TCAACCACCTGACTTCAGCACACCATTACAATCGGGAGACTAAACCAACAACCAGAGGATCTAAAATGTCACATTCAGAT
 721 TTTCAGGAAGAAAATCTTCATTACAGTGGAGCACAAATGTTCCATACAAGACATCATTGAGGAGCCATGCTGTCCCCTTC
 801 TAACCTGAAACACATTCTTTCCCATCCTGGTTGGGCTTCTGTACCTCCTTATTAATTTATGAACCTGAAGTTGCTTGAAG
 881 TGTTTTGGGCTTAATAAATGGGGTGAAAGTATAGGTAGCAGTAACACCTACATGAAACAATACACCTTGGATCTTTTAAT
 961 CTAAATTACTTTTCTTTTTTAAGTCTACTTTTAAAATAAATACTTCTGTAAATATTCTGACTGTAACATTGAGGAATGAA
1041 AATAGCCTTTTAACCTAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUC-GUUCUGGGGCAGAGAUuu 5'
            || | || |||  ||||||  
Target 5' ggAGTCTAGTCCC--TCTCTAct 3'
29 - 49 136.00 -15.00
2
miRNA  3' ucUCGUU----CUGGGGCAGAGAUUu 5'
            ||| |    | ||||  :||||| 
Target 5' ggAGCCATGCTGTCCCC--TTCTAAc 3'
781 - 804 113.00 -12.40
3
miRNA  3' ucUCGUUCUGGGG---C-AGAGAUUu 5'
            | ||| || ||   | |||:| | 
Target 5' gaAACAATACACCTTGGATCTTTTAa 3'
934 - 959 108.00 -9.56
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
786753 366 ClinVar
COSN30449409 9 COSMIC
COSN18325575 69 COSMIC
COSN13618052 83 COSMIC
COSN25762928 106 COSMIC
COSN30511453 107 COSMIC
COSN30473649 134 COSMIC
COSN30151120 142 COSMIC
COSN30151051 157 COSMIC
COSN31511494 184 COSMIC
COSN26563589 201 COSMIC
COSN30515896 224 COSMIC
COSN31567331 227 COSMIC
COSM5097163 234 COSMIC
COSM5082548 239 COSMIC
COSM274217 253 COSMIC
COSM9529328 262 COSMIC
COSM4054354 278 COSMIC
COSM9086081 279 COSMIC
COSM9748753 286 COSMIC
COSM4572849 300 COSMIC
COSM256445 317 COSMIC
COSM3987926 364 COSMIC
COSN31510306 416 COSMIC
COSN30163000 456 COSMIC
COSN28878502 459 COSMIC
COSN31601629 544 COSMIC
COSN6272639 988 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776493263 6 dbSNP
rs748097193 12 dbSNP
rs769517906 13 dbSNP
rs376425558 16 dbSNP
rs766641415 19 dbSNP
rs1221563886 22 dbSNP
rs1477077545 23 dbSNP
rs774708387 25 dbSNP
rs1490403917 26 dbSNP
rs1255927781 27 dbSNP
rs759592377 28 dbSNP
rs1255183512 31 dbSNP
rs1266442830 31 dbSNP
rs1439501853 34 dbSNP
rs767611992 37 dbSNP
rs1266650470 43 dbSNP
rs753180572 45 dbSNP
rs756600383 46 dbSNP
rs1165521182 47 dbSNP
rs563646616 49 dbSNP
rs754141045 51 dbSNP
rs1318056919 57 dbSNP
rs1006120600 59 dbSNP
rs879065223 60 dbSNP
rs1278534385 61 dbSNP
rs1218193064 65 dbSNP
rs8037941 77 dbSNP
rs758266561 88 dbSNP
rs1363942733 92 dbSNP
rs181989004 106 dbSNP
rs1455090605 107 dbSNP
rs1345783679 112 dbSNP
rs994229109 118 dbSNP
rs917683022 126 dbSNP
rs955390235 132 dbSNP
rs1194287493 137 dbSNP
rs1449105410 140 dbSNP
rs1246350760 142 dbSNP
rs1467384596 146 dbSNP
rs970343600 147 dbSNP
rs1171766508 151 dbSNP
rs980454084 160 dbSNP
rs1440600935 162 dbSNP
rs1281866949 166 dbSNP
rs1018646586 171 dbSNP
rs56317498 182 dbSNP
rs1292990647 186 dbSNP
rs775993148 187 dbSNP
rs758054217 189 dbSNP
rs1362361000 198 dbSNP
rs1399002944 199 dbSNP
rs779750968 201 dbSNP
rs1328849903 203 dbSNP
rs1412882647 203 dbSNP
rs913768148 204 dbSNP
rs1171489993 205 dbSNP
rs751216309 207 dbSNP
rs200872015 210 dbSNP
rs748068908 213 dbSNP
rs1359744330 218 dbSNP
rs769806376 221 dbSNP
rs1289324769 222 dbSNP
rs1444336176 223 dbSNP
rs1429186788 225 dbSNP
rs777713107 230 dbSNP
rs201042301 233 dbSNP
rs201289104 235 dbSNP
rs774761615 236 dbSNP
rs1185531562 237 dbSNP
rs1243764094 239 dbSNP
rs565554379 240 dbSNP
rs1161975612 259 dbSNP
rs201814444 263 dbSNP
rs1462862636 264 dbSNP
rs1180428241 270 dbSNP
rs1255937036 270 dbSNP
rs775588585 275 dbSNP
rs761096365 277 dbSNP
rs369930942 278 dbSNP
rs200025938 279 dbSNP
rs186157950 283 dbSNP
rs765884043 286 dbSNP
rs1249306919 289 dbSNP
rs1310207988 290 dbSNP
rs749911100 293 dbSNP
rs927580566 293 dbSNP
rs748267102 296 dbSNP
rs1307669959 299 dbSNP
rs1327807283 300 dbSNP
rs375197641 302 dbSNP
rs770205245 303 dbSNP
rs751211021 308 dbSNP
rs1337393292 309 dbSNP
rs1205413472 318 dbSNP
rs1231156437 320 dbSNP
rs754619508 323 dbSNP
rs1460975827 324 dbSNP
rs752195768 329 dbSNP
rs755678785 331 dbSNP
rs777913445 332 dbSNP
rs749214550 334 dbSNP
rs1038308234 335 dbSNP
rs1217575509 338 dbSNP
rs1371644864 341 dbSNP
rs770890334 343 dbSNP
rs897172783 344 dbSNP
rs778725206 352 dbSNP
rs746096458 353 dbSNP
rs569657077 355 dbSNP
rs1363676460 357 dbSNP
rs139286584 366 dbSNP
rs369469587 372 dbSNP
rs768711798 374 dbSNP
rs1225104902 375 dbSNP
rs777174472 378 dbSNP
rs1163225303 379 dbSNP
rs189861256 381 dbSNP
rs1051616770 390 dbSNP
rs200552828 392 dbSNP
rs1262523057 394 dbSNP
rs1486326327 396 dbSNP
rs1204702302 400 dbSNP
rs376622940 401 dbSNP
rs369417225 404 dbSNP
rs1200570619 408 dbSNP
rs1429249173 411 dbSNP
rs1196973508 412 dbSNP
rs373391184 416 dbSNP
rs11541643 419 dbSNP
rs1336651191 430 dbSNP
rs1424595945 432 dbSNP
rs1293876886 442 dbSNP
rs115872791 446 dbSNP
rs766983922 447 dbSNP
rs1333856165 463 dbSNP
rs142745139 468 dbSNP
rs1391966517 470 dbSNP
rs61298638 482 dbSNP
rs1270459091 505 dbSNP
rs12595509 509 dbSNP
rs536862947 515 dbSNP
rs970480931 521 dbSNP
rs991921109 522 dbSNP
rs1469066544 530 dbSNP
rs1025180379 546 dbSNP
rs980413186 548 dbSNP
rs1212659934 551 dbSNP
rs531911239 555 dbSNP
rs1419145048 556 dbSNP
rs1033387747 562 dbSNP
rs971577281 569 dbSNP
rs1191329521 576 dbSNP
rs1291768392 577 dbSNP
rs1273601485 579 dbSNP
rs1207813774 580 dbSNP
rs764242371 581 dbSNP
rs775192611 588 dbSNP
rs1262413944 596 dbSNP
rs1322195348 608 dbSNP
rs980703867 618 dbSNP
rs557070430 621 dbSNP
rs1330571245 623 dbSNP
rs150753348 630 dbSNP
rs1443411249 638 dbSNP
rs1371929830 640 dbSNP
rs941585374 646 dbSNP
rs913810370 654 dbSNP
rs11541641 656 dbSNP
rs1453906957 657 dbSNP
rs976567482 658 dbSNP
rs1171142760 662 dbSNP
rs918546499 663 dbSNP
rs922675422 671 dbSNP
rs932763204 674 dbSNP
rs1051179169 675 dbSNP
rs1263828659 677 dbSNP
rs1049715039 702 dbSNP
rs1205612908 706 dbSNP
rs137878630 711 dbSNP
rs1241810341 712 dbSNP
rs1236503855 720 dbSNP
rs941367526 721 dbSNP
rs1037248831 728 dbSNP
rs942530558 735 dbSNP
rs573300179 740 dbSNP
rs897420061 747 dbSNP
rs1395984722 749 dbSNP
rs1374112244 756 dbSNP
rs1171202112 758 dbSNP
rs903696566 761 dbSNP
rs78181034 762 dbSNP
rs1395362320 763 dbSNP
rs571726708 775 dbSNP
rs1014404823 778 dbSNP
rs1024508810 780 dbSNP
rs906277033 786 dbSNP
rs545390461 790 dbSNP
rs1193563798 791 dbSNP
rs565588986 791 dbSNP
rs753552809 798 dbSNP
rs1000746002 801 dbSNP
rs1033852784 806 dbSNP
rs1421053247 815 dbSNP
rs531185176 835 dbSNP
rs892124684 848 dbSNP
rs1213065084 853 dbSNP
rs989569368 855 dbSNP
rs1344169158 860 dbSNP
rs544578212 862 dbSNP
rs1428232393 868 dbSNP
rs966626726 882 dbSNP
rs1375488059 889 dbSNP
rs1327553388 896 dbSNP
rs139964319 897 dbSNP
rs1407881761 897 dbSNP
rs561572320 903 dbSNP
rs530219538 904 dbSNP
rs976536150 906 dbSNP
rs922479466 916 dbSNP
rs1168353605 924 dbSNP
rs954120725 928 dbSNP
rs985529697 936 dbSNP
rs765021335 939 dbSNP
rs1312901463 941 dbSNP
rs1355939694 942 dbSNP
rs941348502 943 dbSNP
rs980557897 951 dbSNP
rs1034443860 956 dbSNP
rs962851959 957 dbSNP
rs1273967457 962 dbSNP
rs974291795 965 dbSNP
rs918872603 966 dbSNP
rs929979632 966 dbSNP
rs1234474014 978 dbSNP
rs1445442918 984 dbSNP
rs1212548316 985 dbSNP
rs987228866 992 dbSNP
rs1278451167 1000 dbSNP
rs1238380169 1002 dbSNP
rs1037455767 1007 dbSNP
rs1329094302 1016 dbSNP
rs1461182545 1022 dbSNP
rs1460767759 1025 dbSNP
rs1392066256 1028 dbSNP
rs912582307 1029 dbSNP
rs1182270786 1030 dbSNP
rs1407071698 1041 dbSNP
rs1175621099 1046 dbSNP
rs1382774458 1047 dbSNP
rs918834634 1051 dbSNP
rs950317160 1056 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 90417.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucguucuggggcaGAGAUUu 5'
                         |||||| 
Target 5' ---------------CUCUAAa 3'
1 - 7
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000608100.1 | 3UTR | CUCUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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