pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CC2D2A   
Synonyms JBTS9, MKS6
Description coiled-coil and C2 domain containing 2A
Transcript NM_020785   
Other Transcripts NM_001080522 , NM_001164720   
Expression
Putative miRNA Targets on CC2D2A
3'UTR of CC2D2A
(miRNA target sites are highlighted)
>CC2D2A|NM_020785|3'UTR
   1 AAAGAGCCTGGGCAGGCCAGGCACGGTGACTCACGTCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTAAATCACCT
  81 GAGGTTGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCAGGCG
 161 TGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCA
 241 GTGAGCCGAGATCGGAGCACTGCACTCCAGCCTAGGCAACAGAGCAAGACTCCATCTCAGAAAACAAACAAACAAAAAAG
 321 AGCCTGGAACCTCCTCCCCTCTCTCTTGCTCCCTCTCTCACCATGCGACACACCTGTTTCCCCTTCCCCTTCTGACATAA
 401 GTGAAAGCTTCCTAAGGCCTCACCAGAGGCAGATGCTGGCACCATGCTTATTGCACAGTCTGCAGAACAGTGAGCCAAAA
 481 TAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGATATTCCTTTATAGCAATGCAAAATGGACTAACAATACATAAGTT
 561 AGGGAGTGTTAATTAGAATGGAAATTAAATATGCAGAAACTCAAAGGAAGATGAAATTGTTAGGGAAGACATATGTGTTA
 641 ACCTAGTGAGGCTTGAATCAGATGTTTGGAAGAAATGAGGGAGGTTTCTGAGGCTCCTGGTGACCTTGCCATTGAGGACA
 721 CATATACTTCTCCCCCTACACACGCCTTTTCTTCTTCCCCAGTACAATGAACATTAGGAATTACCTGCTCATTGTAGGGA
 801 AAATGACCACCCTTCAGGCATTGCTTTTCATGAAAAGTGGATTAGACAAGAGGAGAAGTGGTTACACTTTTTAATTGTTA
 881 CATAATTGTTAGACTGTTTTCCCTATGGCAAAGTTGGGAAATAAGTAACTGTTGGAAACTAGAGGCCTTTGGAAGCAAGT
 961 AGACTCTTAGATTGGAAAAATGTGGTTCTAATCTAAAAGCAATGATACAATGAGAGCTGTTATGAATTAATAAAAACAGA
1041 ACCAAAATTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaAC-CCAAAAUUCUCAAGaaau 5'
            || ||  ||::||||||    
Target 5' ccTGAGG--TTGGGAGTTCaaga 3'
78 - 98 104.00 -10.36
2
miRNA  3' uaACCCAAAAUUCU-----CAAGAaau 5'
            | | ||  || |     |||||   
Target 5' ctTAGATTGGAAAAATGTGGTTCTaat 3'
966 - 992 104.00 -6.81
3
miRNA  3' uaacccaaaaUUC-UCAA---GAAAu 5'
                    ||| :|||   |||| 
Target 5' acaagaggagAAGTGGTTACACTTTt 3'
846 - 871 100.00 -7.86
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
425329 64 ClinVar
1206345 69 ClinVar
678326 255 ClinVar
COSN16130392 5 COSMIC
COSN31971986 46 COSMIC
COSN31662862 49 COSMIC
COSN9219281 53 COSMIC
COSN4915385 58 COSMIC
COSN14437821 72 COSMIC
COSN7744007 97 COSMIC
COSN7744008 168 COSMIC
COSN22882606 461 COSMIC
COSN7744015 883 COSMIC
COSN23701940 914 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1385201171 10 dbSNP
rs963186593 12 dbSNP
rs1011059334 16 dbSNP
rs1416653752 17 dbSNP
rs1406018203 22 dbSNP
rs755176887 25 dbSNP
rs561394098 26 dbSNP
rs769167379 32 dbSNP
rs1321496273 33 dbSNP
rs779151956 35 dbSNP
rs1226483857 38 dbSNP
rs1029456472 40 dbSNP
rs1268329893 45 dbSNP
rs1358466887 46 dbSNP
rs982059831 47 dbSNP
rs1362772386 48 dbSNP
rs138193520 52 dbSNP
rs1466764757 58 dbSNP
rs748544504 60 dbSNP
rs1262039178 63 dbSNP
rs1064797307 64 dbSNP
rs570923728 68 dbSNP
rs28662094 69 dbSNP
rs1473375970 73 dbSNP
rs1164852308 74 dbSNP
rs533000763 79 dbSNP
rs552788050 89 dbSNP
rs973159063 96 dbSNP
rs1384593799 108 dbSNP
rs1381434955 112 dbSNP
rs1315877729 114 dbSNP
rs1342053521 124 dbSNP
rs915371635 134 dbSNP
rs1432099697 143 dbSNP
rs181383537 160 dbSNP
rs1039924750 161 dbSNP
rs566024682 166 dbSNP
rs374149394 168 dbSNP
rs10049920 169 dbSNP
rs746286677 171 dbSNP
rs368400685 174 dbSNP
rs1004766046 175 dbSNP
rs1016590995 183 dbSNP
rs1233760156 188 dbSNP
rs568466466 190 dbSNP
rs1298814520 191 dbSNP
rs914819137 193 dbSNP
rs537697345 195 dbSNP
rs1162799301 200 dbSNP
rs1309257909 204 dbSNP
rs769541195 205 dbSNP
rs1412256440 207 dbSNP
rs1395014281 213 dbSNP
rs1411692320 227 dbSNP
rs1298081022 228 dbSNP
rs185666465 230 dbSNP
rs963296237 232 dbSNP
rs1164809683 238 dbSNP
rs1174227546 249 dbSNP
rs946378817 252 dbSNP
rs191774073 254 dbSNP
rs4698387 255 dbSNP
rs1482098557 256 dbSNP
rs143484010 259 dbSNP
rs982617280 262 dbSNP
rs1442469002 267 dbSNP
rs1484153064 267 dbSNP
rs923929931 274 dbSNP
rs773743346 278 dbSNP
rs1289796291 283 dbSNP
rs1007208988 293 dbSNP
rs1334643238 294 dbSNP
rs572849622 296 dbSNP
rs1016823704 297 dbSNP
rs1397051974 302 dbSNP
rs1404816301 314 dbSNP
rs962969960 316 dbSNP
rs553494559 321 dbSNP
rs1161618451 332 dbSNP
rs994143261 335 dbSNP
rs1247467892 337 dbSNP
rs1425428316 340 dbSNP
rs1026074214 344 dbSNP
rs1202757670 346 dbSNP
rs374707847 350 dbSNP
rs1292422879 356 dbSNP
rs956923644 357 dbSNP
rs981546661 358 dbSNP
rs1349334520 361 dbSNP
rs989531363 362 dbSNP
rs915485016 363 dbSNP
rs1202840841 365 dbSNP
rs146285754 367 dbSNP
rs1039872303 368 dbSNP
rs1187067200 371 dbSNP
rs922781399 377 dbSNP
rs1399111457 388 dbSNP
rs933025192 389 dbSNP
rs749447500 397 dbSNP
rs1051955305 398 dbSNP
rs1459411491 402 dbSNP
rs1383358021 427 dbSNP
rs990741086 432 dbSNP
rs542509883 437 dbSNP
rs3087622 453 dbSNP
rs946296853 454 dbSNP
rs779380024 461 dbSNP
rs530441949 464 dbSNP
rs923650577 471 dbSNP
rs1290005698 473 dbSNP
rs1037398384 485 dbSNP
rs1390108009 489 dbSNP
rs1211151219 490 dbSNP
rs1428380178 505 dbSNP
rs933725919 507 dbSNP
rs899067089 517 dbSNP
rs200726469 533 dbSNP
rs1343327986 534 dbSNP
rs1300204684 541 dbSNP
rs1414219584 543 dbSNP
rs1428918088 552 dbSNP
rs1326038373 554 dbSNP
rs1333117815 555 dbSNP
rs544072001 572 dbSNP
rs1012134761 582 dbSNP
rs1363781418 603 dbSNP
rs1459528190 603 dbSNP
rs761808954 607 dbSNP
rs1338274405 613 dbSNP
rs1391806335 617 dbSNP
rs1165898898 619 dbSNP
rs767498520 620 dbSNP
rs1200533215 631 dbSNP
rs1489677521 632 dbSNP
rs576039980 634 dbSNP
rs1222422024 636 dbSNP
rs750194343 638 dbSNP
rs1277256930 643 dbSNP
rs1213223941 644 dbSNP
rs1003590009 648 dbSNP
rs148451912 652 dbSNP
rs1038613564 653 dbSNP
rs755939310 660 dbSNP
rs183695305 662 dbSNP
rs1025631630 664 dbSNP
rs1339868666 669 dbSNP
rs1326742695 698 dbSNP
rs1409217169 705 dbSNP
rs142632190 726 dbSNP
rs1173976610 728 dbSNP
rs1022323749 731 dbSNP
rs1479220099 733 dbSNP
rs1428018211 734 dbSNP
rs528547650 744 dbSNP
rs1483734778 745 dbSNP
rs975673069 746 dbSNP
rs1034408525 747 dbSNP
rs959042998 761 dbSNP
rs1437611051 762 dbSNP
rs1279706547 764 dbSNP
rs1202418349 766 dbSNP
rs548709689 785 dbSNP
rs1204448999 786 dbSNP
rs922728932 791 dbSNP
rs990298708 795 dbSNP
rs1247482879 821 dbSNP
rs1441310062 822 dbSNP
rs1359541534 848 dbSNP
rs796391593 850 dbSNP
rs934152350 860 dbSNP
rs1374103122 861 dbSNP
rs1404958208 862 dbSNP
rs1159420176 866 dbSNP
rs1477910415 869 dbSNP
rs1171129675 876 dbSNP
rs1403522813 883 dbSNP
rs1470027532 888 dbSNP
rs1238442678 895 dbSNP
rs967655808 895 dbSNP
rs978101980 896 dbSNP
rs983003654 897 dbSNP
rs543430720 907 dbSNP
rs1387249181 917 dbSNP
rs923597780 918 dbSNP
rs371527684 926 dbSNP
rs1318820211 933 dbSNP
rs940472710 943 dbSNP
rs933631058 946 dbSNP
rs537421294 947 dbSNP
rs1297676641 960 dbSNP
rs1287063279 964 dbSNP
rs1326882999 968 dbSNP
rs1037746894 970 dbSNP
rs1450249226 974 dbSNP
rs10016163 975 dbSNP
rs1272841023 976 dbSNP
rs947938648 983 dbSNP
rs1157683619 993 dbSNP
rs1405412474 998 dbSNP
rs1044963763 1003 dbSNP
rs1326000621 1007 dbSNP
rs563182291 1012 dbSNP
rs906497562 1015 dbSNP
rs117584957 1017 dbSNP
rs942453779 1024 dbSNP
rs1415510890 1027 dbSNP
rs1030858772 1037 dbSNP
rs1189473232 1043 dbSNP
rs1486945055 1050 dbSNP
rs11937030 1051 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 57545.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_001164720 | 3UTR | CUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_001164720 | 3UTR | CCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_001164720 | 3UTR | CCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903832
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_b
Location of target site NM_001164720 | 3UTR | CUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001164720 | 3UTR | AAAAUAAACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001164720 | 3UTR | UAAACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001164720 | 3UTR | AAACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001164720 | 3UTR | AAACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001164720 | 3UTR | AAACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001164720 | 3UTR | AACCUCUUUUCUUUAUAAAUUACCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000511544.1 | 3UTR | CUCUUUUCUUUAUAAAUUACCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission