pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GSG1   
Synonyms -
Description germ cell associated 1
Transcript NM_001080554   
Other Transcripts NM_001080555 , NM_031289 , NM_153823   
Expression
Putative miRNA Targets on GSG1
3'UTR of GSG1
(miRNA target sites are highlighted)
>GSG1|NM_001080554|3'UTR
   1 TAAGAGCTTCAAGGAAAACCCGAACTGCCTACCACATCACCATCAGTGTTTCCCTCGGCGGCTGTCAAGTGCAGCCCCCA
  81 CCGTGGGTCCTTTGACCAGCTACCACCAGTATCATAATCAGCCCATCCACTCTGTCTCTGAGGGAGTCGACTTCTACTCC
 161 GAGCTGCGGAACAAGGGATTTCAAAGAGGGGCCAGCCAGGAGCTGAAAGAAGCAGTTAGGTCATCTGTAGAGGAAGAGCA
 241 GTGTTAGGAGTTAAGCGGGTTTGGGGAGTAGGCTTGAGCCCTACCTTACACGTCTGCTGATTATCAACATGTGCTTAAGC
 321 CAACATCCGTCTCTTGAGCATGGTTTTTAGAGGCTACGAATAAGGCTATGAATAAGGGTTATCTTTAAGTCCTAAGGGAT
 401 TCCTGGGTGCCACTGCTCTCTTTTCCTCTACAGCTCCATCTTGTTTCACCCACCCCACATCTCACACATCCAGAATTCCC
 481 TTCTTTACTGATAGTTTCTGTGCCAGGTTCTGGGCTAAACCATGGAGATAAAAAGAAGAGTAAAATACACTTCCCGACCT
 561 TAAGGATCTGATACATCTAGTTATTGGTCTGGAAATTGGAGAAATGGAGGTGAGCAAATTAACGGTAGTGTGACTGTGGC
 641 TCAACTTTCCATGGTACGCGCGAATTGTTCTGGAAGTCACAGATGGGAAGACAGAAGCGCCCCTGAGTGCTTTGTCATAT
 721 AGCACAGAAGTCCTCCACACTGCCTGGGACAGTGTCCTGCATCCACACAGTAGGTACCCAGTAAAAGTGTTATTAAATAT
 801 TGTCCCAGGAGCCCTTAGGAGAGTGGTTTAACATGAGAAGGCGCCAACAGCACACAGGGTCAGGGTCACTTCTAGAAATA
 881 GCCCACCAAGGCTATTCAGATTGGACTGTGGTTCCCTTCTGGACAGTCACACCAGGGACTTCCCAGTGAACAAGGGGGCA
 961 TAGGCTCCTCTCTGGATCCCACCTTTTCATCCCTTCTGAGAAATGTACCCTATTATTTCCTTCATAAAGAATGCCACCCA
1041 TCTGATTCCTCAAGAATCTAGACCTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAGATACCCAAAGGATTAC
1121 AAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTACGGCACTATTTATAATAGCAAAGACTTGGAACCAACC
1201 CAAATGTCCATCAGTGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAGAAGG
1281 ATGAGTTTATGCCCTTTGTAGGGACATGGATGAAGCTGGAAACCATCATTCTGAGCAAACTATCGCAAGGATAGAAAACC
1361 AAACACTGCATATTCTCACTCACAGGTGGGAATTGAACAATAAAAACACTTGGACACAGGGTGGGGAACATCACACACCG
1441 GGCCTGTCATGGGGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATATACTAACGTAAATGACGAGTTAATGGGTGCAG
1521 CACACCAACATGGCACATGTATACATATGTAACAAATCTGCACGTTGTGCACATGTACCCTAGAACTTAAAAAAAAAAAA
1601 AAAAGAATGCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acucUGUCCAAGUACGACGAUa 5'
              |||   ||||||||||| 
Target 5' gattACA-AATCATGCTGCTAt 3'
1115 - 1135 161.00 -17.10
2
miRNA  3' acucUGUCCAAGUACGAC-GAUa 5'
              ||| | || ||||| :|| 
Target 5' ccttACACG-TC-TGCTGATTAt 3'
284 - 304 108.00 -8.22
3
miRNA  3' acUCUGUCCAAGUACGACGAUa 5'
            :| |||| |||  || ||| 
Target 5' agGGTCAGGGTCA--CTTCTAg 3'
856 - 875 107.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9369016 14 COSMIC
COSM1586306 21 COSMIC
COSM2228859 22 COSMIC
COSM3384155 46 COSMIC
COSM4512186 52 COSMIC
COSM6553048 55 COSMIC
COSM3458186 56 COSMIC
COSM9253229 59 COSMIC
COSM1605800 60 COSMIC
COSM8739426 66 COSMIC
COSM9059556 79 COSMIC
COSM6032650 83 COSMIC
COSM8629126 121 COSMIC
COSM7760352 123 COSMIC
COSM7760157 124 COSMIC
COSM5684033 127 COSMIC
COSM8593284 132 COSMIC
COSM5430988 137 COSMIC
COSM5349772 144 COSMIC
COSM4040199 149 COSMIC
COSM937106 181 COSMIC
COSM8444585 182 COSMIC
COSM9235397 191 COSMIC
COSM6583799 211 COSMIC
COSM9247398 222 COSMIC
COSM5631724 230 COSMIC
COSM5970598 237 COSMIC
COSM5951873 243 COSMIC
COSN30565321 290 COSMIC
COSN20054519 292 COSMIC
COSN28676701 341 COSMIC
COSN15668224 342 COSMIC
COSN31586249 357 COSMIC
COSN27307249 492 COSMIC
COSN20472380 715 COSMIC
COSN22986664 1327 COSMIC
COSN2460443 1458 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1192258616 8 dbSNP
rs1478005555 9 dbSNP
rs1265279596 12 dbSNP
rs752726381 19 dbSNP
rs1485299527 20 dbSNP
rs762192462 21 dbSNP
rs965546168 22 dbSNP
rs774559031 43 dbSNP
rs768663666 45 dbSNP
rs771719354 46 dbSNP
rs749214852 52 dbSNP
rs779885181 54 dbSNP
rs558298554 56 dbSNP
rs545591892 57 dbSNP
rs554709695 59 dbSNP
rs373360047 60 dbSNP
rs1416215803 61 dbSNP
rs1394649016 62 dbSNP
rs757887520 70 dbSNP
rs1256642782 73 dbSNP
rs1465947348 76 dbSNP
rs1006634239 77 dbSNP
rs1162510506 80 dbSNP
rs754331794 82 dbSNP
rs369212516 83 dbSNP
rs1016683599 84 dbSNP
rs1189054334 85 dbSNP
rs1435517069 87 dbSNP
rs1249397595 92 dbSNP
rs1198810886 94 dbSNP
rs1319551802 96 dbSNP
rs1260460844 97 dbSNP
rs1457225586 99 dbSNP
rs376055173 103 dbSNP
rs373369096 104 dbSNP
rs1285263934 108 dbSNP
rs1450329259 109 dbSNP
rs768051558 110 dbSNP
rs896796399 111 dbSNP
rs1006219679 113 dbSNP
rs1402694992 116 dbSNP
rs1394678934 119 dbSNP
rs886557483 122 dbSNP
rs1460690329 123 dbSNP
rs1414473883 124 dbSNP
rs1164865781 134 dbSNP
rs1382937453 136 dbSNP
rs1468159756 140 dbSNP
rs1228617679 142 dbSNP
rs1289732319 144 dbSNP
rs369027741 146 dbSNP
rs774751028 148 dbSNP
rs376830090 149 dbSNP
rs1250723933 153 dbSNP
rs1212247500 156 dbSNP
rs372526990 160 dbSNP
rs745875459 161 dbSNP
rs1256530586 163 dbSNP
rs1230595327 167 dbSNP
rs1054954692 168 dbSNP
rs1308679271 169 dbSNP
rs776401638 172 dbSNP
rs113320245 176 dbSNP
rs1409905114 182 dbSNP
rs1055264335 185 dbSNP
rs1324076788 186 dbSNP
rs1176822445 188 dbSNP
rs1479932398 189 dbSNP
rs938265140 191 dbSNP
rs1350185612 194 dbSNP
rs746633593 195 dbSNP
rs139963932 196 dbSNP
rs1371534465 197 dbSNP
rs556058400 202 dbSNP
rs1158769973 205 dbSNP
rs1359011824 209 dbSNP
rs1440960055 212 dbSNP
rs1309504641 215 dbSNP
rs913004737 220 dbSNP
rs747615000 222 dbSNP
rs1192557449 228 dbSNP
rs146166808 230 dbSNP
rs913218539 236 dbSNP
rs865779952 237 dbSNP
rs1445812701 243 dbSNP
rs756675582 248 dbSNP
rs570562453 256 dbSNP
rs965597289 257 dbSNP
rs751015690 261 dbSNP
rs923118178 264 dbSNP
rs1368558908 266 dbSNP
rs974565917 269 dbSNP
rs745551723 270 dbSNP
rs1222025710 274 dbSNP
rs1428350686 275 dbSNP
rs1359859987 284 dbSNP
rs757723608 291 dbSNP
rs1421005137 292 dbSNP
rs1373032253 297 dbSNP
rs1460625369 299 dbSNP
rs552299673 305 dbSNP
rs144390418 310 dbSNP
rs1480398369 321 dbSNP
rs112790824 324 dbSNP
rs189159052 328 dbSNP
rs1026296483 329 dbSNP
rs1191851816 329 dbSNP
rs1013683179 333 dbSNP
rs566167253 339 dbSNP
rs1034300854 340 dbSNP
rs7970258 341 dbSNP
rs375132927 348 dbSNP
rs1024631205 350 dbSNP
rs756967638 357 dbSNP
rs748866586 358 dbSNP
rs1385052498 364 dbSNP
rs1302624449 370 dbSNP
rs1365781223 375 dbSNP
rs891474651 378 dbSNP
rs1230357158 381 dbSNP
rs556613990 388 dbSNP
rs895070188 392 dbSNP
rs777398439 400 dbSNP
rs1222569985 402 dbSNP
rs1267345184 405 dbSNP
rs1052687071 406 dbSNP
rs933073981 415 dbSNP
rs748145208 419 dbSNP
rs1451802260 425 dbSNP
rs936518105 450 dbSNP
rs923043394 457 dbSNP
rs1334987451 458 dbSNP
rs756682852 465 dbSNP
rs1409057214 468 dbSNP
rs1165004847 473 dbSNP
rs903655934 476 dbSNP
rs1384075032 481 dbSNP
rs1459436040 483 dbSNP
rs1324573094 486 dbSNP
rs1389294917 492 dbSNP
rs1385807380 500 dbSNP
rs1360986592 503 dbSNP
rs1043562347 507 dbSNP
rs1315134584 508 dbSNP
rs1320080172 512 dbSNP
rs975019065 523 dbSNP
rs1288307530 527 dbSNP
rs1213146896 533 dbSNP
rs943206061 539 dbSNP
rs909147658 540 dbSNP
rs1451601544 542 dbSNP
rs984744555 550 dbSNP
rs562035471 555 dbSNP
rs781492814 556 dbSNP
rs753104519 563 dbSNP
rs950578329 564 dbSNP
rs1026319403 566 dbSNP
rs992155059 567 dbSNP
rs767945864 568 dbSNP
rs539828717 572 dbSNP
rs1183916927 574 dbSNP
rs1415530907 581 dbSNP
rs913274478 586 dbSNP
rs1163668379 587 dbSNP
rs1164044961 596 dbSNP
rs1041016328 599 dbSNP
rs1316170108 600 dbSNP
rs944007722 606 dbSNP
rs911477170 607 dbSNP
rs1304303783 609 dbSNP
rs543775915 623 dbSNP
rs190903880 624 dbSNP
rs1002808273 625 dbSNP
rs904039174 629 dbSNP
rs1226611442 631 dbSNP
rs1022855884 633 dbSNP
rs368019851 644 dbSNP
rs1485217785 652 dbSNP
rs1212693220 653 dbSNP
rs1294573810 655 dbSNP
rs531993303 657 dbSNP
rs116137568 658 dbSNP
rs1052759734 659 dbSNP
rs1473299500 660 dbSNP
rs546377441 661 dbSNP
rs571850996 662 dbSNP
rs1229912269 670 dbSNP
rs1373368566 681 dbSNP
rs1414432765 696 dbSNP
rs1327222724 698 dbSNP
rs1308896271 699 dbSNP
rs1317767557 700 dbSNP
rs1380597188 705 dbSNP
rs1440134834 710 dbSNP
rs1367434772 712 dbSNP
rs1038765178 717 dbSNP
rs1278699594 720 dbSNP
rs943091682 722 dbSNP
rs553438049 723 dbSNP
rs1347573707 733 dbSNP
rs909061730 739 dbSNP
rs961153346 741 dbSNP
rs1024693226 749 dbSNP
rs1179131223 750 dbSNP
rs1048885552 754 dbSNP
rs1231799289 756 dbSNP
rs1478342125 762 dbSNP
rs929245314 771 dbSNP
rs1393144866 773 dbSNP
rs1433895565 774 dbSNP
rs1168933856 780 dbSNP
rs1372651422 789 dbSNP
rs1013258645 797 dbSNP
rs1328342418 805 dbSNP
rs959001206 811 dbSNP
rs1439270453 821 dbSNP
rs1301924951 823 dbSNP
rs139655850 824 dbSNP
rs771802963 824 dbSNP
rs1229607058 825 dbSNP
rs919165801 827 dbSNP
rs1277203551 833 dbSNP
rs992186585 842 dbSNP
rs960678453 843 dbSNP
rs1271725086 846 dbSNP
rs1451703319 858 dbSNP
rs1372143165 869 dbSNP
rs1251081018 881 dbSNP
rs574108288 882 dbSNP
rs1453656552 890 dbSNP
rs926592903 891 dbSNP
rs1189054747 894 dbSNP
rs1391772468 897 dbSNP
rs903707332 900 dbSNP
rs1481141059 907 dbSNP
rs980891652 914 dbSNP
rs1042220461 916 dbSNP
rs766652120 923 dbSNP
rs1323892589 928 dbSNP
rs891889894 930 dbSNP
rs1223930325 932 dbSNP
rs1300321767 934 dbSNP
rs1325013138 935 dbSNP
rs1227097180 937 dbSNP
rs1041073991 944 dbSNP
rs1490316861 951 dbSNP
rs555696972 959 dbSNP
rs944054882 959 dbSNP
rs1288224783 961 dbSNP
rs911196620 964 dbSNP
rs1270728765 966 dbSNP
rs537750984 973 dbSNP
rs747953187 978 dbSNP
rs1468027283 983 dbSNP
rs1018712463 990 dbSNP
rs1209253858 996 dbSNP
rs1022464971 1001 dbSNP
rs35692581 1004 dbSNP
rs1009689594 1006 dbSNP
rs1050452912 1007 dbSNP
rs956986726 1021 dbSNP
rs1192142987 1023 dbSNP
rs931566953 1025 dbSNP
rs1340398757 1026 dbSNP
rs1473894246 1038 dbSNP
rs920120046 1042 dbSNP
rs1417222972 1044 dbSNP
rs12579533 1048 dbSNP
rs1225442911 1053 dbSNP
rs1347471774 1055 dbSNP
rs1283960107 1059 dbSNP
rs1404310188 1063 dbSNP
rs1458262764 1064 dbSNP
rs972920985 1067 dbSNP
rs570720007 1073 dbSNP
rs1383372187 1084 dbSNP
rs1343532817 1093 dbSNP
rs1029858887 1101 dbSNP
rs1335197659 1108 dbSNP
rs1340772194 1117 dbSNP
rs187549888 1118 dbSNP
rs757837235 1120 dbSNP
rs901528665 1131 dbSNP
rs1333488705 1142 dbSNP
rs1330725774 1143 dbSNP
rs1262446065 1145 dbSNP
rs1484813628 1146 dbSNP
rs1204402145 1147 dbSNP
rs1256579421 1148 dbSNP
rs1039082563 1150 dbSNP
rs375402960 1164 dbSNP
rs566205853 1165 dbSNP
rs1007311628 1172 dbSNP
rs763145946 1173 dbSNP
rs868000620 1174 dbSNP
rs887519338 1182 dbSNP
rs1048955904 1189 dbSNP
rs929109238 1190 dbSNP
rs146365180 1192 dbSNP
rs1480417624 1201 dbSNP
rs1056413087 1204 dbSNP
rs939235823 1214 dbSNP
rs570983673 1218 dbSNP
rs1362576085 1219 dbSNP
rs1001225470 1220 dbSNP
rs1173591098 1222 dbSNP
rs1404777189 1223 dbSNP
rs1416287688 1239 dbSNP
rs1310727635 1240 dbSNP
rs926651271 1243 dbSNP
rs1245477456 1252 dbSNP
rs967988632 1261 dbSNP
rs1308512071 1270 dbSNP
rs1315115346 1273 dbSNP
rs1184492530 1283 dbSNP
rs1438765800 1284 dbSNP
rs773323728 1288 dbSNP
rs1272657538 1290 dbSNP
rs968200092 1293 dbSNP
rs751863880 1316 dbSNP
rs1208393639 1318 dbSNP
rs1325868430 1325 dbSNP
rs988297851 1326 dbSNP
rs956853612 1329 dbSNP
rs150885449 1331 dbSNP
rs535918884 1333 dbSNP
rs1029763926 1344 dbSNP
rs1263877375 1345 dbSNP
rs1222980145 1353 dbSNP
rs1343627723 1354 dbSNP
rs976987345 1360 dbSNP
rs1419058253 1392 dbSNP
rs568474196 1393 dbSNP
rs901655178 1393 dbSNP
rs1173343256 1394 dbSNP
rs1281228480 1410 dbSNP
rs1017307956 1411 dbSNP
rs1007628037 1416 dbSNP
rs1374542253 1422 dbSNP
rs1429981879 1423 dbSNP
rs1299432464 1424 dbSNP
rs1334986331 1429 dbSNP
rs778236606 1430 dbSNP
rs182873121 1433 dbSNP
rs1406310604 1439 dbSNP
rs758021296 1440 dbSNP
rs1343215952 1445 dbSNP
rs1467759661 1451 dbSNP
rs372936745 1455 dbSNP
rs1160801694 1456 dbSNP
rs547907283 1458 dbSNP
rs1232686801 1462 dbSNP
rs1193464315 1463 dbSNP
rs889811739 1464 dbSNP
rs1172127688 1465 dbSNP
rs1462876385 1467 dbSNP
rs1243962512 1469 dbSNP
rs1461052853 1469 dbSNP
rs372446004 1470 dbSNP
rs752310549 1472 dbSNP
rs1302475878 1473 dbSNP
rs1203208628 1474 dbSNP
rs1310525341 1476 dbSNP
rs1365625997 1482 dbSNP
rs1286385880 1485 dbSNP
rs1049741372 1487 dbSNP
rs931594056 1489 dbSNP
rs1307079162 1493 dbSNP
rs775237168 1495 dbSNP
rs531961612 1496 dbSNP
rs564793921 1504 dbSNP
rs1247888968 1505 dbSNP
rs1037663252 1511 dbSNP
rs1383142319 1514 dbSNP
rs940191347 1515 dbSNP
rs1185081735 1532 dbSNP
rs1335685660 1534 dbSNP
rs1416950381 1543 dbSNP
rs1427548112 1544 dbSNP
rs1449931938 1553 dbSNP
rs1419366398 1557 dbSNP
rs1346487347 1560 dbSNP
rs1318352612 1567 dbSNP
rs1401846131 1570 dbSNP
rs552533649 1575 dbSNP
rs1157288442 1579 dbSNP
rs1446833437 1581 dbSNP
rs1386180025 1583 dbSNP
rs1183253920 1587 dbSNP
rs1229080003 1588 dbSNP
rs991938663 1596 dbSNP
rs11415280 1605 dbSNP
rs1232699103 1605 dbSNP
rs1269332060 1605 dbSNP
rs1332807118 1605 dbSNP
rs369350463 1605 dbSNP
rs398018494 1605 dbSNP
rs1485370112 1606 dbSNP
rs1188188521 1607 dbSNP
rs1259135220 1608 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 83445.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acucUGUCCAAGUACGACGAUa 5'
              |||   ||||||||||| 
Target 5' -auuACA-AAUCAUGCUGCUAu 3'
1 - 20
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000396302.3 | 3UTR | AUUACAAAUCAUGCUGCUAUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

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