miRTarBase - #MIRT544401


—
pre-miRNA Information
pre-miRNA hsa-mir-6515   
Genomic Coordinates chr19: 12940484 - 12940540
Description Homo sapiens miR-6515 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6515-3p
Sequence 38| UCUCUUCAUCUACCCCCCAG |57
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs75453089 2 dbSNP
rs373354313 3 dbSNP
rs747907310 7 dbSNP
rs769602728 8 dbSNP
rs940767179 9 dbSNP
rs772968331 10 dbSNP
rs762602753 11 dbSNP
rs764010401 12 dbSNP
rs773666399 12 dbSNP
rs761256965 13 dbSNP
rs1320543469 15 dbSNP
rs764459512 16 dbSNP
rs754231139 17 dbSNP
rs878975696 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZSCAN12   
Synonyms ZFP96, ZNF29K1, ZNF305, ZNF96, dJ29K1.2
Description zinc finger and SCAN domain containing 12
Transcript NM_001163391   
Expression
Putative miRNA Targets on ZSCAN12
3'UTR of ZSCAN12
(miRNA target sites are highlighted)		 
>ZSCAN12|NM_001163391|3'UTR
   1 TGACTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGTGAGAAATACTATTTAGCTTTACAATTATTGGGGCAAAACTTC
  81 AGTCACCATTGTTATAAGGAAACCTCAGATATTTAATAAGAATTCACTGTGTGCTGCCCATTGTACTACGTGCTGTGGAG
 161 AACAAGAAGATAACCCCAAACTCTTTTCTCAGAGAGTTTGTAGCCTAGTTTGGGATAGATAAGATCCACATATTTAGTCA
 241 TATAAGACTACAGGAGAGTAGAATTGATGCACCAGATGGTGTCGAATGAAAGTGGTACTTTGTAACAGACTATAAGTGCT
 321 GTAAATTCTAAAGGACAGGTTACTTTTGCCTGGAGTGGTCAAGAAAGATTTTATTTAAAATAAGGATTTGACGGGCAGAC
 401 TTAGCAGTCAAAAGGGAGAAAGCGGGTAAAACAAATGTAAGCCATCATAAGAGTGCATGTGGTTTGGAAGCATCAGGGAA
 481 AAGACTAGCCAACCTGAAGTAAAAGGTTCGTGCAAATTGGGCAATCAATAGCATTAAGTTGGAAACAGCTTGGGGACAGA
 561 CACATAAGAGGGCCAGAGTGTGAATAATTTCATCTAATACTTTATAGCACTTGGACATTTACAGAGCACTTTTCTCAATT
 641 CCTAAAATACCTTGGTAAATCAAAAGCATTCTCCATTTTAAAAATGAGAATACTCTTGCCTATGGAGATGGCAACATAGC
 721 TATAATCCCACACAAAGAAAAAGACCAGTAACCTAAGTGCAGGTCTTTTGACTTCTAGTCCTGGCCATTACTCTAGTGAT
 801 CCTCCAACTTTGATGAACATCAAAATCATGTTTGGAGCTTGTTTAACATCCCTGAATCCCACTCACATTCTGCTTCATTA
 881 GGCCTAGGATGGGAGTTGAGAATCTTCATTTTTATAGCTCCACAGTTACTTAATATACTTTAAAATTTGAGAAGCGTTGA
 961 GTTGAATGACAGCTGACTTCATGGCTGTCTGCGAAGTGGGGAAGCCTGAACACAGTCCTATAAACTAAAGGCCACTGCAG
1041 ACTTTTAGCACAAGGAGATCCTTACAGGGAACATGTGCCATCAGCTCTTTGGAGTGAACAAGGAATTAGACCCCCATCAT
1121 GCCAAAAAACTAGGATTTTTAGGTGGTCTTTCCATCCCTTCAGATTTAAGTATTCAAAGAAAGAGAGACAGACCTACATT
1201 CCAAGGGTCTTCTGAGTGCAAGGCCTTGTGTTGTTTGTTTATTTAGGGGAGGGCCTGGTGCTCTTCTCTGTTTTATGCTT
1281 TACCTTCTTTTATTTCTCAGATCTCATGTTAGCACTATGTTCTGAATTCCCTAATAATGGCTCTTGAGAACTGATTTACA
1361 TTTTGTTGGTTTGTTTACTTCTTGAGCACATAAAAGGACCCCAAATTAGAGATACTATCCCTTGGGCTTCTGAAAAATGA
1441 ATCAACCAAAACTGGTTGACTCTAACCTTGCCTTGCTGAGTAAAAATTCTGCTTTGGATGAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaccccccaucUACUUCUcu 5'
                     |||:|||  
Target 5' tactcttgcctATGGAGAtg 3'
 691 - 710 109.00 -5.70
2 
miRNA  3' gaCCCCCCAUCUACUUCUcu 5'
            | || | | | |||||  
Target 5' ctGTGGAGAACAAGAAGAta 3'
 153 - 172 106.00 -5.50
3 
miRNA  3' gaCCCCCCAUC-UACUUCUcu 5'
            | |||| ||  |||| |  
Target 5' aaGTGGGGAAGCCTGAACAca 3'
 994 - 1014 106.00 -7.66
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8513907 8 COSMIC
COSN28397321 35 COSMIC
COSN32046083 74 COSMIC
COSN7869474 188 COSMIC
COSN20102526 304 COSMIC
COSN26227762 472 COSMIC
COSN9779345 474 COSMIC
COSN24962436 542 COSMIC
COSN16882924 576 COSMIC
COSN2158520 748 COSMIC
COSN29902174 776 COSMIC
COSN21377920 864 COSMIC
COSN23648025 1273 COSMIC
COSN15926252 1350 COSMIC
COSN22414202 1938 COSMIC
COSN4954995 2359 COSMIC
COSN25354983 2772 COSMIC
COSN9779344 2801 COSMIC
COSN21057163 3017 COSMIC
COSN27071912 3181 COSMIC
COSN21861751 3280 COSMIC
COSN24204837 3387 COSMIC
COSN22111239 3607 COSMIC
COSN21332146 3631 COSMIC
COSN16996472 3729 COSMIC
COSN23727102 3829 COSMIC
COSN9312136 3988 COSMIC
COSN7789650 4032 COSMIC
COSN19465373 4853 COSMIC
COSN227488 5082 COSMIC
COSN26464302 5198 COSMIC
COSN21636244 5283 COSMIC
COSN6317673 5568 COSMIC
COSN7869473 5599 COSMIC
COSN26549996 5614 COSMIC
rs13213986 222 GWAS
rs181122333 3079 GWAS
rs67981811 3396 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1341743819 4 dbSNP
rs1331702458 6 dbSNP
rs1368739312 7 dbSNP
rs375236272 9 dbSNP
rs79433518 10 dbSNP
rs573886439 27 dbSNP
rs753105842 28 dbSNP
rs765569694 35 dbSNP
rs2859379 36 dbSNP
rs1473780437 37 dbSNP
rs753490313 49 dbSNP
rs145458218 66 dbSNP
rs551419471 81 dbSNP
rs1254014854 89 dbSNP
rs541681025 95 dbSNP
rs953916570 99 dbSNP
rs192126275 104 dbSNP
rs557449869 109 dbSNP
rs150686870 115 dbSNP
rs1039332603 130 dbSNP
rs943233745 132 dbSNP
rs1389367985 137 dbSNP
rs1403162794 147 dbSNP
rs116149050 150 dbSNP
rs1314826617 155 dbSNP
rs891887766 156 dbSNP
rs1032144788 157 dbSNP
rs566020938 161 dbSNP
rs549271552 163 dbSNP
rs1342821078 181 dbSNP
rs1351831906 194 dbSNP
rs1280781122 197 dbSNP
rs868451074 211 dbSNP
rs904508080 214 dbSNP
rs1219454382 216 dbSNP
rs1044701761 219 dbSNP
rs13213986 222 dbSNP
rs896030885 232 dbSNP
rs1057326419 241 dbSNP
rs1354332134 242 dbSNP
rs929428861 244 dbSNP
rs1290705465 245 dbSNP
rs1490481484 245 dbSNP
rs1035959191 254 dbSNP
rs1260732985 258 dbSNP
rs1478711519 260 dbSNP
rs9468365 265 dbSNP
rs1459778333 272 dbSNP
rs1386821403 278 dbSNP
rs188811685 280 dbSNP
rs941066827 283 dbSNP
rs756408550 284 dbSNP
rs1457918863 290 dbSNP
rs985384979 296 dbSNP
rs1196812870 297 dbSNP
rs886189367 298 dbSNP
rs201107997 305 dbSNP
rs199939013 306 dbSNP
rs1333929034 308 dbSNP
rs34325224 308 dbSNP
rs67123064 308 dbSNP
rs746467535 308 dbSNP
rs1338872626 310 dbSNP
rs953968558 317 dbSNP
rs1192793619 318 dbSNP
rs1463382548 319 dbSNP
rs140721403 323 dbSNP
rs976568849 325 dbSNP
rs1208991895 335 dbSNP
rs997201314 336 dbSNP
rs1283875800 349 dbSNP
rs956044480 367 dbSNP
rs1489230948 373 dbSNP
rs1205446545 379 dbSNP
rs1031780962 380 dbSNP
rs1038973196 392 dbSNP
rs1189242632 393 dbSNP
rs1243195482 394 dbSNP
rs1231871823 406 dbSNP
rs1438602280 409 dbSNP
rs1312202993 421 dbSNP
rs1302587964 422 dbSNP
rs1454782290 423 dbSNP
rs36092177 424 dbSNP
rs968786219 447 dbSNP
rs1397982011 449 dbSNP
rs1337703164 457 dbSNP
rs1022974717 458 dbSNP
rs1444567987 470 dbSNP
rs1320277618 479 dbSNP
rs1436145262 480 dbSNP
rs1012887878 481 dbSNP
rs896081366 484 dbSNP
rs1465622219 486 dbSNP
rs913326787 493 dbSNP
rs1342676049 503 dbSNP
rs1243447710 505 dbSNP
rs1378209436 505 dbSNP
rs368514472 506 dbSNP
rs1457046061 507 dbSNP
rs1057374258 508 dbSNP
rs993703575 510 dbSNP
rs541062771 515 dbSNP
rs1447530808 523 dbSNP
rs1247226553 524 dbSNP
rs1188962288 528 dbSNP
rs1376270810 550 dbSNP
rs1467957814 552 dbSNP
rs1177602289 556 dbSNP
rs1399755011 563 dbSNP
rs1464286004 564 dbSNP
rs1333405767 570 dbSNP
rs1374202019 572 dbSNP
rs1391878863 587 dbSNP
rs1300577632 594 dbSNP
rs1466020707 598 dbSNP
rs980409184 603 dbSNP
rs1225049394 613 dbSNP
rs781108094 613 dbSNP
rs970292675 631 dbSNP
rs1036817275 651 dbSNP
rs1345143987 652 dbSNP
rs1316876221 653 dbSNP
rs941105750 655 dbSNP
rs909596563 666 dbSNP
rs1049396541 669 dbSNP
rs1196414076 671 dbSNP
rs1016483555 673 dbSNP
rs1480706536 690 dbSNP
rs1006397904 693 dbSNP
rs932293135 698 dbSNP
rs754857468 702 dbSNP
rs922543147 711 dbSNP
rs1423396543 718 dbSNP
rs950828649 720 dbSNP
rs1173158848 728 dbSNP
rs976621416 731 dbSNP
rs1355177342 737 dbSNP
rs1457527996 742 dbSNP
rs955931324 744 dbSNP
rs924436400 748 dbSNP
rs1388418529 750 dbSNP
rs978577802 758 dbSNP
rs1406722801 764 dbSNP
rs146867358 777 dbSNP
rs1339648049 783 dbSNP
rs1367726936 792 dbSNP
rs1297357039 795 dbSNP
rs1307718482 801 dbSNP
rs1220108200 803 dbSNP
rs1263190247 806 dbSNP
rs1026080516 813 dbSNP
rs997655379 817 dbSNP
rs1332445324 818 dbSNP
rs183428082 819 dbSNP
rs1196111737 838 dbSNP
rs760080054 845 dbSNP
rs1012940059 849 dbSNP
rs1007470145 853 dbSNP
rs960009469 866 dbSNP
rs1427814706 882 dbSNP
rs1043589138 897 dbSNP
rs1169078388 910 dbSNP
rs1451103057 917 dbSNP
rs1303746749 928 dbSNP
rs945223951 936 dbSNP
rs1359657560 938 dbSNP
rs375547737 955 dbSNP
rs1290422138 956 dbSNP
rs1362157658 959 dbSNP
rs994149061 962 dbSNP
rs751455560 963 dbSNP
rs540579944 968 dbSNP
rs542966190 970 dbSNP
rs573847303 977 dbSNP
rs1016848307 983 dbSNP
rs757940160 987 dbSNP
rs1274574846 988 dbSNP
rs1286017237 991 dbSNP
rs1206418068 992 dbSNP
rs143819164 993 dbSNP
rs1049447339 999 dbSNP
rs1180387251 1004 dbSNP
rs1245030056 1008 dbSNP
rs932343963 1011 dbSNP
rs1445384659 1018 dbSNP
rs980509385 1020 dbSNP
rs370163566 1032 dbSNP
rs1243251284 1043 dbSNP
rs1379544237 1045 dbSNP
rs900835936 1046 dbSNP
rs1160966077 1054 dbSNP
rs1341289173 1060 dbSNP
rs1446810966 1063 dbSNP
rs1315007436 1064 dbSNP
rs140117745 1065 dbSNP
rs1452644955 1066 dbSNP
rs372813638 1073 dbSNP
rs1369954652 1074 dbSNP
rs1375266947 1075 dbSNP
rs1226010710 1079 dbSNP
rs762213979 1083 dbSNP
rs1312036037 1085 dbSNP
rs1384553200 1088 dbSNP
rs934574022 1090 dbSNP
rs1308588799 1094 dbSNP
rs1461947227 1112 dbSNP
rs1178041023 1116 dbSNP
rs749972422 1119 dbSNP
rs1431492849 1132 dbSNP
rs924515632 1147 dbSNP
rs1388365968 1157 dbSNP
rs1468505719 1182 dbSNP
rs1178932847 1185 dbSNP
rs1408427445 1187 dbSNP
rs1413764930 1189 dbSNP
rs146587637 1202 dbSNP
rs1407776954 1213 dbSNP
rs192420796 1217 dbSNP
rs1330045995 1224 dbSNP
rs950882865 1231 dbSNP
rs1444970077 1241 dbSNP
rs916020297 1263 dbSNP
rs1280709377 1271 dbSNP
rs1367517670 1274 dbSNP
rs1217772038 1275 dbSNP
rs1285607527 1286 dbSNP
rs1369826504 1292 dbSNP
rs1179502807 1305 dbSNP
rs761563651 1315 dbSNP
rs1251860347 1318 dbSNP
rs1256210554 1321 dbSNP
rs1206530259 1322 dbSNP
rs1440040095 1330 dbSNP
rs1206533114 1333 dbSNP
rs960061271 1368 dbSNP
rs966182463 1369 dbSNP
rs1035690805 1373 dbSNP
rs1288221049 1377 dbSNP
rs1209601171 1389 dbSNP
rs1357424876 1391 dbSNP
rs1017314522 1392 dbSNP
rs1007187085 1397 dbSNP
rs972051558 1400 dbSNP
rs1275287289 1401 dbSNP
rs962616305 1408 dbSNP
rs1009421532 1413 dbSNP
rs892329055 1439 dbSNP
rs775709670 1445 dbSNP
rs1016489969 1451 dbSNP
rs1444339547 1463 dbSNP
rs1346590011 1466 dbSNP
rs1329267561 1469 dbSNP
rs1218235736 1497 dbSNP
rs1056693930 1502 dbSNP
rs907286676 1505 dbSNP
rs1322720897 1508 dbSNP
rs1405756288 1509 dbSNP
rs1006821443 1510 dbSNP
rs1220219540 1521 dbSNP
rs948715104 1542 dbSNP
rs1156548958 1551 dbSNP
rs889266300 1556 dbSNP
rs1192668501 1558 dbSNP
rs1028059931 1561 dbSNP
rs996547938 1564 dbSNP
rs534278807 1571 dbSNP
rs1183677794 1576 dbSNP
rs985068680 1583 dbSNP
rs929533693 1610 dbSNP
rs142865926 1617 dbSNP
rs1399712323 1624 dbSNP
rs1436887587 1635 dbSNP
rs767869881 1642 dbSNP
rs919470198 1654 dbSNP
rs377445293 1663 dbSNP
rs1328378131 1666 dbSNP
rs976658568 1667 dbSNP
rs1245496260 1674 dbSNP
rs774688391 1689 dbSNP
rs966203946 1690 dbSNP
rs903116765 1691 dbSNP
rs555610656 1705 dbSNP
rs1354398037 1710 dbSNP
rs1243673688 1715 dbSNP
rs1293767299 1716 dbSNP
rs947231014 1722 dbSNP
rs1215557923 1741 dbSNP
rs915738715 1749 dbSNP
rs1259436880 1752 dbSNP
rs576271812 1761 dbSNP
rs991613054 1771 dbSNP
rs938751340 1777 dbSNP
rs564546738 1784 dbSNP
rs759771333 1787 dbSNP
rs1207110853 1801 dbSNP
rs1442315577 1809 dbSNP
rs1328710252 1810 dbSNP
rs1386343321 1811 dbSNP
rs928703240 1814 dbSNP
rs1419649790 1821 dbSNP
rs1268917042 1822 dbSNP
rs759827066 1824 dbSNP
rs1387651307 1825 dbSNP
rs1401484332 1826 dbSNP
rs188724146 1830 dbSNP
rs1342892308 1836 dbSNP
rs1454591989 1839 dbSNP
rs1315844172 1842 dbSNP
rs1383382191 1854 dbSNP
rs749802351 1856 dbSNP
rs909480016 1857 dbSNP
rs550085208 1862 dbSNP
rs1258715523 1868 dbSNP
rs1352644534 1871 dbSNP
rs533621752 1882 dbSNP
rs985049821 1884 dbSNP
rs546296960 1903 dbSNP
rs1277397668 1912 dbSNP
rs1437064174 1913 dbSNP
rs1372941921 1917 dbSNP
rs1184852705 1921 dbSNP
rs1243258453 1922 dbSNP
rs1439592469 1927 dbSNP
rs953583009 1937 dbSNP
rs1029118458 1941 dbSNP
rs997604660 1945 dbSNP
rs570817133 1952 dbSNP
rs965111420 1953 dbSNP
rs1172371973 1955 dbSNP
rs1160849055 1962 dbSNP
rs1412263423 1975 dbSNP
rs79476469 1976 dbSNP
rs771453095 1978 dbSNP
rs1471093885 1982 dbSNP
rs998951000 1985 dbSNP
rs527660072 2000 dbSNP
rs1172528268 2001 dbSNP
rs1399708288 2010 dbSNP
rs1390735315 2022 dbSNP
rs562081223 2024 dbSNP
rs1304867734 2026 dbSNP
rs1337470094 2029 dbSNP
rs1239430605 2034 dbSNP
rs148520383 2035 dbSNP
rs1320923746 2036 dbSNP
rs773321907 2039 dbSNP
rs867990079 2042 dbSNP
rs769905166 2047 dbSNP
rs1253210600 2050 dbSNP
rs1420225475 2051 dbSNP
rs1187057112 2062 dbSNP
rs1427683497 2065 dbSNP
rs1481528268 2074 dbSNP
rs1464658657 2078 dbSNP
rs1423001394 2080 dbSNP
rs887810655 2084 dbSNP
rs1299984399 2088 dbSNP
rs375216302 2096 dbSNP
rs1398485843 2109 dbSNP
rs1011495911 2110 dbSNP
rs894358989 2112 dbSNP
rs1218135635 2114 dbSNP
rs919510191 2122 dbSNP
rs780365466 2124 dbSNP
rs1306573104 2132 dbSNP
rs546913221 2142 dbSNP
rs1055643962 2149 dbSNP
rs910703513 2162 dbSNP
rs1222463533 2166 dbSNP
rs1267196885 2172 dbSNP
rs1490961706 2179 dbSNP
rs1200605171 2188 dbSNP
rs1423114179 2200 dbSNP
rs1426987697 2209 dbSNP
rs1172573264 2213 dbSNP
rs770493657 2214 dbSNP
rs985873076 2216 dbSNP
rs781283716 2229 dbSNP
rs928732650 2252 dbSNP
rs967763523 2253 dbSNP
rs182924249 2269 dbSNP
rs914948831 2276 dbSNP
rs987772086 2291 dbSNP
rs1036432916 2296 dbSNP
rs768430293 2297 dbSNP
rs34090740 2300 dbSNP
rs575842247 2312 dbSNP
rs1365570257 2316 dbSNP
rs1307631263 2320 dbSNP
rs1245878577 2322 dbSNP
rs1290135099 2340 dbSNP
rs1035363440 2341 dbSNP
rs376365180 2341 dbSNP
rs1223623227 2347 dbSNP
rs9461458 2356 dbSNP
rs1484998418 2357 dbSNP
rs1403020912 2360 dbSNP
rs1445294275 2372 dbSNP
rs984715419 2388 dbSNP
rs1423388644 2389 dbSNP
rs1181834721 2394 dbSNP
rs780089130 2401 dbSNP
rs1426504950 2404 dbSNP
rs1163943842 2406 dbSNP
rs953636573 2417 dbSNP
rs758455902 2422 dbSNP
rs1451159229 2423 dbSNP
rs1023463593 2427 dbSNP
rs1167200528 2429 dbSNP
rs1449250605 2430 dbSNP
rs1013044184 2437 dbSNP
rs9366719 2440 dbSNP
rs749919148 2441 dbSNP
rs535896947 2444 dbSNP
rs778627836 2445 dbSNP
rs1247397864 2454 dbSNP
rs1283980121 2458 dbSNP
rs1019811325 2459 dbSNP
rs149340071 2460 dbSNP
rs756843523 2480 dbSNP
rs1486646454 2481 dbSNP
rs1181785227 2485 dbSNP
rs1245082657 2491 dbSNP
rs1446343930 2493 dbSNP
rs75349236 2500 dbSNP
rs1204300027 2501 dbSNP
rs9468364 2520 dbSNP
rs77082598 2521 dbSNP
rs944964264 2522 dbSNP
rs554926183 2531 dbSNP
rs1377977743 2534 dbSNP
rs766842239 2541 dbSNP
rs535108227 2544 dbSNP
rs1407723157 2559 dbSNP
rs74525464 2560 dbSNP
rs1279559998 2565 dbSNP
rs551199150 2571 dbSNP
rs189738468 2576 dbSNP
rs909252638 2577 dbSNP
rs1308196531 2613 dbSNP
rs1323049981 2614 dbSNP
rs1202058581 2621 dbSNP
rs1429623990 2631 dbSNP
rs1265063150 2634 dbSNP
rs1355534227 2642 dbSNP
rs1461882968 2646 dbSNP
rs1203918823 2649 dbSNP
rs1049062438 2650 dbSNP
rs1172948056 2653 dbSNP
rs1412490871 2655 dbSNP
rs140627633 2656 dbSNP
rs982469878 2658 dbSNP
rs969327178 2663 dbSNP
rs557844947 2667 dbSNP
rs983960886 2668 dbSNP
rs922209402 2671 dbSNP
rs1353221292 2682 dbSNP
rs1188854027 2684 dbSNP
rs1445037293 2702 dbSNP
rs952494392 2712 dbSNP
rs1345337244 2717 dbSNP
rs976290909 2722 dbSNP
rs944903317 2723 dbSNP
rs924129366 2728 dbSNP
rs1249648834 2738 dbSNP
rs1181427653 2744 dbSNP
rs1483321908 2745 dbSNP
rs1252920551 2746 dbSNP
rs993577767 2755 dbSNP
rs1490144609 2767 dbSNP
rs1197022984 2774 dbSNP
rs1270522870 2781 dbSNP
rs978625072 2786 dbSNP
rs967163003 2788 dbSNP
rs1478166880 2790 dbSNP
rs897850709 2792 dbSNP
rs1018938604 2801 dbSNP
rs1412116665 2810 dbSNP
rs1169852041 2812 dbSNP
rs1365510043 2817 dbSNP
rs185715451 2820 dbSNP
rs1219089488 2824 dbSNP
rs1009603535 2826 dbSNP
rs9380075 2827 dbSNP
rs1320827679 2831 dbSNP
rs1290159915 2832 dbSNP
rs562583110 2834 dbSNP
rs889369034 2837 dbSNP
rs1346343806 2847 dbSNP
rs1430331596 2850 dbSNP
rs989833204 2851 dbSNP
rs1268470424 2861 dbSNP
rs1341635056 2868 dbSNP
rs539140007 2872 dbSNP
rs534272353 2873 dbSNP
rs568598484 2883 dbSNP
rs1348115660 2885 dbSNP
rs548601363 2891 dbSNP
rs1034298920 2894 dbSNP
rs1287136828 2904 dbSNP
rs1488586247 2907 dbSNP
rs1002784391 2909 dbSNP
rs946900908 2909 dbSNP
rs1409791724 2912 dbSNP
rs893954762 2916 dbSNP
rs907072336 2921 dbSNP
rs1476068915 2937 dbSNP
rs1374687986 2941 dbSNP
rs1052641108 2944 dbSNP
rs1300330203 2948 dbSNP
rs1385101010 2976 dbSNP
rs1423330329 2996 dbSNP
rs754751566 3009 dbSNP
rs935085697 3028 dbSNP
rs1391966017 3039 dbSNP
rs1290318067 3043 dbSNP
rs1400326728 3060 dbSNP
rs181122333 3079 dbSNP
rs1328432911 3087 dbSNP
rs1435834806 3093 dbSNP
rs1314490683 3094 dbSNP
rs1381903971 3100 dbSNP
rs1005093171 3105 dbSNP
rs981802083 3108 dbSNP
rs1356867497 3109 dbSNP
rs1204333471 3110 dbSNP
rs1281627779 3111 dbSNP
rs1349619747 3115 dbSNP
rs1165951941 3116 dbSNP
rs1443302107 3117 dbSNP
rs887883920 3121 dbSNP
rs1186028326 3122 dbSNP
rs1463188942 3125 dbSNP
rs768782065 3127 dbSNP
rs1157207408 3132 dbSNP
rs932013110 3135 dbSNP
rs947666582 3136 dbSNP
rs900503370 3137 dbSNP
rs1040642861 3140 dbSNP
rs1314696284 3159 dbSNP
rs746775528 3160 dbSNP
rs780033238 3161 dbSNP
rs1419657350 3170 dbSNP
rs1277585702 3172 dbSNP
rs944979177 3181 dbSNP
rs1228680827 3182 dbSNP
rs1261954516 3195 dbSNP
rs924154513 3202 dbSNP
rs1189328547 3204 dbSNP
rs1205025178 3206 dbSNP
rs563399190 3210 dbSNP
rs1437787031 3223 dbSNP
rs1247022283 3227 dbSNP
rs772127156 3228 dbSNP
rs1473031192 3229 dbSNP
rs1176057746 3231 dbSNP
rs550050082 3233 dbSNP
rs1267013819 3252 dbSNP
rs1008907904 3263 dbSNP
rs568659318 3265 dbSNP
rs1309795417 3266 dbSNP
rs17314224 3285 dbSNP
rs760849561 3287 dbSNP
rs1034016063 3295 dbSNP
rs1326581913 3300 dbSNP
rs1011097919 3301 dbSNP
rs1443461534 3311 dbSNP
rs1282173214 3315 dbSNP
rs1386704705 3325 dbSNP
rs1234724698 3343 dbSNP
rs1256112351 3345 dbSNP
rs1339273532 3346 dbSNP
rs1194643645 3347 dbSNP
rs1253091364 3348 dbSNP
rs1483546454 3354 dbSNP
rs981477303 3355 dbSNP
rs1266975740 3359 dbSNP
rs1481558502 3361 dbSNP
rs1176840197 3364 dbSNP
rs1372627105 3369 dbSNP
rs540901232 3372 dbSNP
rs1052610737 3380 dbSNP
rs1372336254 3382 dbSNP
rs1410142510 3386 dbSNP
rs1365571114 3387 dbSNP
rs571784505 3393 dbSNP
rs753313261 3394 dbSNP
rs67981811 3396 dbSNP
rs1325410428 3408 dbSNP
rs1027729364 3423 dbSNP
rs996213802 3428 dbSNP
rs900554639 3430 dbSNP
rs1277316698 3445 dbSNP
rs1046541271 3464 dbSNP
rs1222159927 3465 dbSNP
rs371607888 3468 dbSNP
rs1463315762 3469 dbSNP
rs1040359572 3470 dbSNP
rs947719938 3476 dbSNP
rs1205288582 3487 dbSNP
rs1486573184 3491 dbSNP
rs374808405 3495 dbSNP
rs1426743662 3502 dbSNP
rs1195438126 3522 dbSNP
rs1231752418 3523 dbSNP
rs916231040 3524 dbSNP
rs902784156 3527 dbSNP
rs1363542171 3533 dbSNP
rs984066787 3534 dbSNP
rs1383805110 3538 dbSNP
rs1268846441 3539 dbSNP
rs1379973940 3544 dbSNP
rs931210357 3561 dbSNP
rs190211454 3566 dbSNP
rs1245950016 3573 dbSNP
rs946935455 3574 dbSNP
rs915406649 3575 dbSNP
rs1222778316 3579 dbSNP
rs1054247379 3580 dbSNP
rs111708943 3584 dbSNP
rs1485029588 3591 dbSNP
rs965553613 3597 dbSNP
rs1248770784 3599 dbSNP
rs937078632 3602 dbSNP
rs1182978260 3603 dbSNP
rs771712095 3603 dbSNP
rs911994945 3608 dbSNP
rs1425270418 3609 dbSNP
rs1165240447 3610 dbSNP
rs7764737 3616 dbSNP
rs981147423 3617 dbSNP
rs971449936 3622 dbSNP
rs1452543153 3626 dbSNP
rs907812351 3629 dbSNP
rs762021304 3638 dbSNP
rs540142828 3641 dbSNP
rs951920186 3645 dbSNP
rs1229200364 3646 dbSNP
rs766787370 3651 dbSNP
rs763322065 3663 dbSNP
rs1031634843 3664 dbSNP
rs1389279286 3669 dbSNP
rs999710453 3674 dbSNP
rs906670044 3683 dbSNP
rs1367579257 3687 dbSNP
rs1201862663 3691 dbSNP
rs1484211156 3697 dbSNP
rs556459380 3697 dbSNP
rs7764722 3698 dbSNP
rs1429892185 3699 dbSNP
rs894846376 3700 dbSNP
rs1471397521 3702 dbSNP
rs1048089462 3708 dbSNP
rs765693753 3717 dbSNP
rs1008922665 3718 dbSNP
rs902499196 3721 dbSNP
rs867742171 3743 dbSNP
rs528810801 3746 dbSNP
rs1297944960 3748 dbSNP
rs1371708044 3758 dbSNP
rs1411897914 3763 dbSNP
rs114031556 3766 dbSNP
rs554323535 3767 dbSNP
rs1323114451 3772 dbSNP
rs1055311492 3774 dbSNP
rs938135595 3801 dbSNP
rs943906516 3809 dbSNP
rs1213592630 3810 dbSNP
rs912367532 3818 dbSNP
rs987547435 3819 dbSNP
rs927052059 3824 dbSNP
rs1045875544 3826 dbSNP
rs953457356 3839 dbSNP
rs921978561 3841 dbSNP
rs564686354 3857 dbSNP
rs534443478 3871 dbSNP
rs1356100181 3876 dbSNP
rs879790986 3882 dbSNP
rs907529476 3894 dbSNP
rs796423789 3898 dbSNP
rs1415556397 3899 dbSNP
rs1427715885 3900 dbSNP
rs1170277560 3913 dbSNP
rs138102268 3914 dbSNP
rs548713154 3933 dbSNP
rs1369759383 3935 dbSNP
rs1308988464 3942 dbSNP
rs1345153851 3944 dbSNP
rs1168274362 3953 dbSNP
rs1403286115 3954 dbSNP
rs958249264 3955 dbSNP
rs951970577 3956 dbSNP
rs1031268964 3962 dbSNP
rs1272275965 3974 dbSNP
rs3799499 3981 dbSNP
rs1275036023 3983 dbSNP
rs1186318431 3987 dbSNP
rs1025555839 3989 dbSNP
rs1247949575 3991 dbSNP
rs974567920 4004 dbSNP
rs150335033 4005 dbSNP
rs1388908985 4007 dbSNP
rs894900271 4009 dbSNP
rs1048139931 4017 dbSNP
rs1019057922 4027 dbSNP
rs1258941601 4031 dbSNP
rs1009389292 4032 dbSNP
rs141204233 4035 dbSNP
rs1350673370 4047 dbSNP
rs943941921 4048 dbSNP
rs371871735 4062 dbSNP
rs776093383 4063 dbSNP
rs1049550214 4069 dbSNP
rs1298076677 4076 dbSNP
rs1358376399 4084 dbSNP
rs570682575 4087 dbSNP
rs1010879880 4088 dbSNP
rs1451794776 4099 dbSNP
rs1232861442 4101 dbSNP
rs1356203031 4102 dbSNP
rs776622342 4103 dbSNP
rs1214498834 4115 dbSNP
rs1245619437 4116 dbSNP
rs1295168561 4117 dbSNP
rs1189701452 4120 dbSNP
rs1385156502 4131 dbSNP
rs547185718 4142 dbSNP
rs1165342422 4152 dbSNP
rs1414850301 4154 dbSNP
rs1400300754 4164 dbSNP
rs1318645249 4184 dbSNP
rs1349779828 4186 dbSNP
rs1215527768 4197 dbSNP
rs1437191898 4199 dbSNP
rs1321211842 4208 dbSNP
rs922031024 4211 dbSNP
rs187077794 4218 dbSNP
rs866325751 4220 dbSNP
rs1388256482 4237 dbSNP
rs1285696508 4242 dbSNP
rs936708207 4249 dbSNP
rs923923678 4255 dbSNP
rs1002399371 4259 dbSNP
rs148208741 4261 dbSNP
rs1419443346 4264 dbSNP
rs978400825 4268 dbSNP
rs971384430 4271 dbSNP
rs1190085160 4276 dbSNP
rs1045523205 4301 dbSNP
rs949842371 4313 dbSNP
rs1157127697 4314 dbSNP
rs1414455771 4319 dbSNP
rs1232828572 4330 dbSNP
rs764342682 4331 dbSNP
rs143034365 4335 dbSNP
rs930289666 4344 dbSNP
rs181672748 4372 dbSNP
rs2531826 4373 dbSNP
rs1213343572 4374 dbSNP
rs943240089 4384 dbSNP
rs1008187740 4386 dbSNP
rs1330748332 4387 dbSNP
rs891042856 4399 dbSNP
rs1261923492 4400 dbSNP
rs911713507 4404 dbSNP
rs1049601258 4410 dbSNP
rs987284807 4414 dbSNP
rs1202641276 4415 dbSNP
rs967206387 4436 dbSNP
rs932502577 4439 dbSNP
rs892950676 4443 dbSNP
rs1180452033 4447 dbSNP
rs7763846 4450 dbSNP
rs1021010991 4451 dbSNP
rs1226659903 4456 dbSNP
rs1198822811 4474 dbSNP
rs1053826859 4482 dbSNP
rs1349962230 4486 dbSNP
rs1464489213 4494 dbSNP
rs1174317059 4499 dbSNP
rs1402807325 4500 dbSNP
rs1428928588 4501 dbSNP
rs1305921275 4502 dbSNP
rs1351980606 4510 dbSNP
rs1410004033 4511 dbSNP
rs1300005084 4514 dbSNP
rs1328782308 4517 dbSNP
rs1280097659 4518 dbSNP
rs936742860 4519 dbSNP
rs924003595 4524 dbSNP
rs1324939507 4525 dbSNP
rs1203498205 4534 dbSNP
rs1483514822 4546 dbSNP
rs989503543 4547 dbSNP
rs1441267169 4548 dbSNP
rs7759744 4550 dbSNP
rs1435041359 4557 dbSNP
rs1199647259 4574 dbSNP
rs7759597 4580 dbSNP
rs1002451885 4582 dbSNP
rs771931115 4593 dbSNP
rs1372114998 4596 dbSNP
rs991048310 4602 dbSNP
rs1025570438 4603 dbSNP
rs1388112464 4607 dbSNP
rs1159680615 4634 dbSNP
rs745693028 4635 dbSNP
rs1027145307 4639 dbSNP
rs1004355555 4654 dbSNP
rs140769992 4655 dbSNP
rs1047451660 4662 dbSNP
rs377192666 4664 dbSNP
rs7759453 4669 dbSNP
rs1015307238 4690 dbSNP
rs898828026 4693 dbSNP
rs1038967637 4695 dbSNP
rs943285063 4697 dbSNP
rs7759708 4704 dbSNP
rs911780799 4705 dbSNP
rs1263952070 4709 dbSNP
rs987726037 4710 dbSNP
rs1489571764 4721 dbSNP
rs774300725 4723 dbSNP
rs770825928 4732 dbSNP
rs1210542658 4735 dbSNP
rs1261069198 4739 dbSNP
rs945210026 4749 dbSNP
rs1391941715 4766 dbSNP
rs7759191 4797 dbSNP
rs1446521510 4800 dbSNP
rs1285016177 4802 dbSNP
rs1163777385 4804 dbSNP
rs1366391407 4806 dbSNP
rs1459082515 4808 dbSNP
rs1293623150 4809 dbSNP
rs1387198080 4810 dbSNP
rs893005626 4817 dbSNP
rs77457865 4818 dbSNP
rs1366531418 4823 dbSNP
rs7741238 4824 dbSNP
rs1342781023 4827 dbSNP
rs375036252 4828 dbSNP
rs1302483901 4830 dbSNP
rs190697564 4845 dbSNP
rs958062581 4865 dbSNP
rs1033681817 4874 dbSNP
rs778474003 4874 dbSNP
rs980733651 4878 dbSNP
rs1210656198 4881 dbSNP
rs1249870451 4885 dbSNP
rs1294994343 4886 dbSNP
rs777133953 4897 dbSNP
rs139030194 4898 dbSNP
rs949434094 4904 dbSNP
rs1253755037 4910 dbSNP
rs1425194814 4914 dbSNP
rs1165131066 4915 dbSNP
rs574738972 4917 dbSNP
rs1455235519 4921 dbSNP
rs1055414669 4925 dbSNP
rs1390063895 4948 dbSNP
rs1447883098 4956 dbSNP
rs553111564 4965 dbSNP
rs558888363 4969 dbSNP
rs920133336 4974 dbSNP
rs1288025001 4976 dbSNP
rs974652354 4977 dbSNP
rs1230350412 5005 dbSNP
rs961536826 5008 dbSNP
rs908305173 5024 dbSNP
rs538703367 5034 dbSNP
rs758722136 5039 dbSNP
rs1026055531 5048 dbSNP
rs1027937103 5054 dbSNP
rs994545133 5055 dbSNP
rs996758302 5058 dbSNP
rs1250668095 5059 dbSNP
rs1435730039 5060 dbSNP
rs898881914 5067 dbSNP
rs185442036 5069 dbSNP
rs1408003749 5071 dbSNP
rs1038685484 5073 dbSNP
rs750773073 5082 dbSNP
rs1007200549 5083 dbSNP
rs1466917637 5090 dbSNP
rs1475189840 5110 dbSNP
rs1307772600 5111 dbSNP
rs180839010 5117 dbSNP
rs999108186 5118 dbSNP
rs1218024559 5121 dbSNP
rs1051671947 5127 dbSNP
rs945234889 5129 dbSNP
rs1042890371 5131 dbSNP
rs1313855032 5137 dbSNP
rs1211371877 5157 dbSNP
rs1349818991 5161 dbSNP
rs1481877790 5162 dbSNP
rs1013665157 5164 dbSNP
rs913732720 5169 dbSNP
rs527455749 5172 dbSNP
rs1213672917 5185 dbSNP
rs1362203483 5190 dbSNP
rs78209536 5195 dbSNP
rs1477442889 5200 dbSNP
rs896524324 5204 dbSNP
rs1053576384 5206 dbSNP
rs936745545 5237 dbSNP
rs1455051455 5239 dbSNP
rs1445174464 5251 dbSNP
rs1369033795 5264 dbSNP
rs937958745 5293 dbSNP
rs1308930213 5295 dbSNP
rs926664007 5311 dbSNP
rs567929699 5318 dbSNP
rs970733903 5321 dbSNP
rs1295324544 5371 dbSNP
rs1435860047 5377 dbSNP
rs1038591758 5381 dbSNP
rs940205175 5382 dbSNP
rs1377691863 5384 dbSNP
rs908694988 5387 dbSNP
rs918192890 5394 dbSNP
rs983046419 5395 dbSNP
rs1273331579 5399 dbSNP
rs951672656 5404 dbSNP
rs548017627 5405 dbSNP
rs1218776862 5417 dbSNP
rs1469313357 5421 dbSNP
rs757742280 5421 dbSNP
rs1188410908 5423 dbSNP
rs955122421 5424 dbSNP
rs1451777185 5430 dbSNP
rs1168826032 5433 dbSNP
rs1188437644 5434 dbSNP
rs1413388252 5447 dbSNP
rs1403766996 5458 dbSNP
rs1167018252 5466 dbSNP
rs1319152080 5468 dbSNP
rs995600267 5484 dbSNP
rs73742557 5485 dbSNP
rs1434459561 5491 dbSNP
rs1017287356 5497 dbSNP
rs1362915088 5501 dbSNP
rs1256842805 5506 dbSNP
rs778648233 5510 dbSNP
rs1188637027 5511 dbSNP
rs370319508 5517 dbSNP
rs957006626 5518 dbSNP
rs1334984890 5527 dbSNP
rs1207531585 5531 dbSNP
rs890118124 5541 dbSNP
rs1246773715 5542 dbSNP
rs1052153270 5555 dbSNP
rs367932659 5556 dbSNP
rs1237206104 5561 dbSNP
rs1471936985 5562 dbSNP
rs1165289406 5566 dbSNP
rs967646616 5567 dbSNP
rs3799500 5574 dbSNP
rs1013717771 5586 dbSNP
rs1386398177 5591 dbSNP
rs1402320727 5599 dbSNP
rs1053630940 5611 dbSNP
rs896576856 5616 dbSNP
rs1445532871 5625 dbSNP
rs1294801916 5628 dbSNP
rs760846898 5629 dbSNP
rs370717094 5632 dbSNP
rs1265645668 5636 dbSNP
rs560723414 5639 dbSNP
rs1045142365 5640 dbSNP
rs1278532840 5652 dbSNP
rs1441107098 5654 dbSNP
rs1190022319 5678 dbSNP
rs1002221049 5693 dbSNP
rs1472363883 5702 dbSNP
rs898476048 5702 dbSNP
rs1414196093 5709 dbSNP
rs1471120997 5711 dbSNP
rs1369808299 5714 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9753.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000361028.1 | 3UTR | GAAUCUCUUUUCAAUCUGUGCAAUCAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000361028.1 | 3UTR | AAUCUCUUUUCAAUCUGUGCAAUCAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
181 hsa-miR-6515-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059268 CELF1 CUGBP Elav-like family member 1 2 2
MIRT063207 ADIPOR2 adiponectin receptor 2 2 2
MIRT118973 SOWAHC sosondowah ankyrin repeat domain family member C 2 2
MIRT234292 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta 2 2
MIRT305089 SRPRB SRP receptor beta subunit 2 4
MIRT316916 ATXN1 ataxin 1 2 2
MIRT320191 ITGB8 integrin subunit beta 8 2 2
MIRT366351 SCML2 Scm polycomb group protein like 2 2 2
MIRT443924 ZNF99 zinc finger protein 99 2 6
MIRT445622 CLIC4 chloride intracellular channel 4 2 2
MIRT447378 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 2 2
MIRT463191 ZNF275 zinc finger protein 275 2 4
MIRT472656 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 4
MIRT478997 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT497221 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT498343 PRELID2 PRELI domain containing 2 2 2
MIRT498362 PRMT3 protein arginine methyltransferase 3 2 2
MIRT501097 SLC5A6 solute carrier family 5 member 6 2 4
MIRT505086 ZBTB18 zinc finger and BTB domain containing 18 2 6
MIRT507527 DSTN destrin, actin depolymerizing factor 2 4
MIRT525793 SOD2 superoxide dismutase 2 2 2
MIRT544401 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT558808 CDK6 cyclin dependent kinase 6 2 4
MIRT559126 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT566474 PEG10 paternally expressed 10 2 2
MIRT607261 GRAMD1B GRAM domain containing 1B 2 4
MIRT609251 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT610065 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610135 FOXI2 forkhead box I2 2 4
MIRT610280 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT611285 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT611353 KIAA2018 upstream transcription factor family member 3 2 2
MIRT611812 FCRL4 Fc receptor like 4 2 2
MIRT611898 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612749 MYOCD myocardin 2 2
MIRT614180 FAM53B family with sequence similarity 53 member B 2 2
MIRT614825 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616702 UBXN2A UBX domain protein 2A 2 2
MIRT616970 HMGB1 high mobility group box 1 2 2
MIRT616992 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617132 ZNF556 zinc finger protein 556 2 4
MIRT617595 NUDT5 nudix hydrolase 5 2 4
MIRT617997 KSR2 kinase suppressor of ras 2 2 2
MIRT619451 NUP214 nucleoporin 214 2 2
MIRT619507 TXLNB taxilin beta 2 2
MIRT619547 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619719 FCF1 FCF1, rRNA-processing protein 2 2
MIRT619806 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619939 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT620456 CENPN centromere protein N 2 2
MIRT621054 DGKD diacylglycerol kinase delta 2 2
MIRT622730 PITPNM3 PITPNM family member 3 2 2
MIRT623010 ONECUT3 one cut homeobox 3 2 2
MIRT623432 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT624379 CDH4 cadherin 4 2 2
MIRT624493 CABP4 calcium binding protein 4 2 2
MIRT625740 MTSS1 MTSS1, I-BAR domain containing 2 2
MIRT627048 HOXA13 homeobox A13 2 2
MIRT630857 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632232 VTA1 vesicle trafficking 1 2 2
MIRT632978 E2F2 E2F transcription factor 2 2 2
MIRT635721 CCL16 C-C motif chemokine ligand 16 2 2
MIRT636489 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT637743 POLR3K RNA polymerase III subunit K 2 2
MIRT639610 SLC25A32 solute carrier family 25 member 32 2 4
MIRT639878 STC1 stanniocalcin 1 2 2
MIRT640507 ANTXR1 anthrax toxin receptor 1 2 2
MIRT640910 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641864 STOML1 stomatin like 1 2 2
MIRT641989 OXSR1 oxidative stress responsive 1 2 2
MIRT642897 CASP1 caspase 1 2 2
MIRT643210 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT643970 FHL2 four and a half LIM domains 2 2 4
MIRT644517 TADA2A transcriptional adaptor 2A 2 2
MIRT644564 SPOP speckle type BTB/POZ protein 2 2
MIRT644738 CCDC174 coiled-coil domain containing 174 2 2
MIRT645518 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT645597 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT646262 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT646467 PRDM10 PR/SET domain 10 2 2
MIRT646623 CENPL centromere protein L 2 2
MIRT646797 EVC2 EvC ciliary complex subunit 2 2 2
MIRT647188 ANKRD45 ankyrin repeat domain 45 2 2
MIRT647254 PTGDR2 prostaglandin D2 receptor 2 2 2
MIRT647895 EPN2 epsin 2 2 2
MIRT648129 SEMA3E semaphorin 3E 2 4
MIRT648133 JAGN1 jagunal homolog 1 2 2
MIRT648361 AKIP1 A-kinase interacting protein 1 2 2
MIRT648574 CAPN13 calpain 13 2 2
MIRT648622 CYB561A3 cytochrome b561 family member A3 2 2
MIRT649441 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT649456 WDR70 WD repeat domain 70 2 2
MIRT649479 CLDN16 claudin 16 2 2
MIRT649552 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT650060 CCDC134 coiled-coil domain containing 134 2 2
MIRT650272 KLF2 Kruppel like factor 2 2 4
MIRT650290 PYCARD PYD and CARD domain containing 2 2
MIRT651327 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652194 TRIM39 tripartite motif containing 39 2 2
MIRT652284 TNS4 tensin 4 2 2
MIRT652386 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652702 THBS2 thrombospondin 2 2 2
MIRT652782 TEAD1 TEA domain transcription factor 1 2 2
MIRT653087 SSR3 signal sequence receptor subunit 3 2 2
MIRT653836 SHISA9 shisa family member 9 2 2
MIRT654147 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT655016 PLA2G16 phospholipase A2 group XVI 2 2
MIRT655065 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT655217 PFKM phosphofructokinase, muscle 2 2
MIRT655267 PER2 period circadian clock 2 2 2
MIRT655772 NPTX1 neuronal pentraxin 1 2 2
MIRT655791 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT656556 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT656831 KLF8 Kruppel like factor 8 2 2
MIRT656887 KIF1C kinesin family member 1C 2 2
MIRT657295 HOXB5 homeobox B5 2 2
MIRT657346 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT657967 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658082 FOXR2 forkhead box R2 2 2
MIRT658133 FMN1 formin 1 2 2
MIRT658163 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT658787 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT658928 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659989 C2CD2L C2CD2 like 2 2
MIRT660012 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT660295 BICC1 BicC family RNA binding protein 1 2 2
MIRT662571 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT664406 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT667402 MIB1 mindbomb E3 ubiquitin protein ligase 1 2 2
MIRT667621 LIMCH1 LIM and calponin homology domains 1 2 2
MIRT668421 FAM217B family with sequence similarity 217 member B 2 2
MIRT668524 ESRRG estrogen related receptor gamma 2 2
MIRT668680 DR1 down-regulator of transcription 1 2 2
MIRT695383 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT702511 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT709032 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT710831 PLEKHO2 pleckstrin homology domain containing O2 2 2
MIRT710967 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711145 TMEM174 transmembrane protein 174 2 2
MIRT711176 EMCN endomucin 2 2
MIRT711205 SMIM14 small integral membrane protein 14 2 2
MIRT711589 SETD1A SET domain containing 1A 2 2
MIRT711751 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712258 PTPRN2 protein tyrosine phosphatase, receptor type N2 2 2
MIRT712376 MTPN myotrophin 2 2
MIRT713780 ZNF460 zinc finger protein 460 2 2
MIRT714560 LMTK2 lemur tyrosine kinase 2 2 2
MIRT714983 RAB21 RAB21, member RAS oncogene family 2 2
MIRT716253 PALM2 paralemmin 2 2 2
MIRT716362 RPS9 ribosomal protein S9 2 2
MIRT716485 SAMD7 sterile alpha motif domain containing 7 2 2
MIRT716640 DPY19L4 dpy-19 like 4 2 2
MIRT717034 KRTAP4-9 keratin associated protein 4-9 2 2
MIRT717422 SURF6 surfeit 6 2 2
MIRT717891 GBP4 guanylate binding protein 4 2 2
MIRT718646 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT719230 ARL11 ADP ribosylation factor like GTPase 11 2 2
MIRT719279 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719353 GDF7 growth differentiation factor 7 2 2
MIRT719513 TMEM175 transmembrane protein 175 2 2
MIRT719618 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT719882 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT720184 CMC4 C-X9-C motif containing 4 2 2
MIRT720249 FAM83F family with sequence similarity 83 member F 2 2
MIRT720343 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT720487 TMEM178B transmembrane protein 178B 2 2
MIRT720937 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721168 NSG1 neuronal vesicle trafficking associated 1 2 2
MIRT721499 THRB thyroid hormone receptor beta 2 2
MIRT721518 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT721570 SLC5A12 solute carrier family 5 member 12 2 2
MIRT721865 CENPJ centromere protein J 2 2
MIRT721871 RHOH ras homolog family member H 2 2
MIRT722330 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT722494 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT722775 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT723967 GPR146 G protein-coupled receptor 146 2 2
MIRT724488 CSNK1A1 casein kinase 1 alpha 1 2 2
MIRT724748 ZNF391 zinc finger protein 391 2 2
MIRT725274 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725373 MTF2 metal response element binding transcription factor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6515-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-6515-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6515-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6515-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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