pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol CLSPN   
Synonyms -
Description claspin
Transcript NM_001190481   
Other Transcripts NM_022111   
Expression
Putative miRNA Targets on CLSPN
3'UTR of CLSPN
(miRNA target sites are highlighted)
>CLSPN|NM_001190481|3'UTR
   1 CACCATCAAAGGTGCCAAAATCTACATTGAGACTGCTTTGAGAAGTTTCTAGCACTGAAAGTTGGAATTGACACTCCAGC
  81 CAATGATCCTTCCTTCTTTCATAATCAATGCAATAAGATTGCAGACAGAAATTCCAGTGATTTCTACTGCACAGCTCTGG
 161 ACATCTCTTTTCCTAGTATTATTCCCTGAATTGGCCACTGATTTCAATTCTGCAGTATTTACAACATCAACAACTCATGG
 241 AATACTTGGGTGAGGTTTCCTTTTTTTTTTTTTTTTTAAGATGGGAGTCTCACTCTGTTGCCCAGCTTGGAGTGCAGTGG
 321 CGTGATCTCGGCTCACCACAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTCCTTCAGCCTCCCGAGTAGCTGGGATTA
 401 CAGGCATGTGCCAATACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTT
 481 GAACTCCTGACCTCAAATGATCCATCCACCTCGGCCCCACAAAGTGCTGGTCACATGCATGAGTCACTGCACCTGGCCTT
 561 GGGTTAGGTTTCACTTCCTCCATTAGACATTTGACATTTTATTGTAGCAGCTTTCTGGGTTAATATCTCTTTGTGATTGA
 641 TAGAAGTGGTTGGAAGAGGAAGAGTAGGGAAAAGTGTGACATTACAGATTAAACAGTGAAAATCAGTACCATAATGACTC
 721 CTTTACACCCATGAGATACGTACCATGATGACCAGGGCTCGGTGAAAGAAAGATTTCTTTTTTTTTTTTTGAGATAGTCT
 801 CACTTTGTTGCCCAGTCTGGAGTGCAGTGGCGCAATCTCGGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTC
 881 CTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACACCTGGCTAATTTTTGTATTTTTAGTGGAGACA
 961 GGGAGTCACCATGTTGGCCAGGCTGGTCTCGATCTCCTGACCTCAAGTGATCCAGCTGCCTCAGCCTCCCAAAGTGCTGA
1041 GATTACAGGCGTGAGCCACTGTGCCCAGCCAAAAGAACGATTTCTTAGATGGAGGACCTAGGAACCAACAGATGGGCTGC
1121 TGTATTACTCTTACCCCTTTCATTTTCCTGTATGCTTCTTCCCAAGGCAGCATCAAATTTTGAATTAATTTTTGCTGCTT
1201 AATAAGGACTTAAACTGGTACCCAAGTCAGAAAGACTCTGCCTCTAATTTTCTGGGGCTTGGGGATGAAGATAAAGTGTT
1281 ACACCCAGTGTTTGTCCACCACAGTCTGTGGGGCAGAGAGACCCTTCCTGGGACTGAATTCTCAATTTGAAGCACTGTTG
1361 TTCAAAGATCTCCCTTCTGGGTCTGACAAGAAGAAACATAACCCTTATTTATTGCATTCTTCTGGCTTACATACATTGCC
1441 CTCACTAATCAATGGACATTTCAGCATTTCATTACTAATTTTGAGAGAAGGCCACCATGGAATTTAATAAAAATATTATT
1521 GAAGAGAATTGCCATCATTCTCCATTTTCCCTGAACTACCACAAGCTTCTCAGAATTTTAGACAAATGTTTTTCCCCTCA
1601 GAACTGAGCATCAGTGCTGCTTTGGAAAAACATTCCATGTGAATACTGTGGTTTCAGTGTCAGGACCTGTACTTGGGCAG
1681 TTGGAAGAGAGTGTGCCAGTTTTTTACTGGGAGATGGGAACACCAATTTAATTGATGCAATTAGGTTGTAGGTTTTTTAC
1761 AGTTTTTCTTTTCTTTTCTTTTTCTTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTGAGACATAGGCTGGCTCTGTCA
1841 CCTAGGCTGGAATACAATGGCATGATCTCGGCTTACTGCAACCTCCGCCTCCTAGGTTCAAGCAATTCTGCCTCGGCCTC
1921 CCAAATAGCAGGGATTACAGGCACCTGCCACCACTCCCAGCTAATTTTTTGTATTTTTATTAGAGATGAGGTTTCGCCAT
2001 GTTGGCCAGGCTGGTCTTGAACTCCTGACCTGAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTATAGGCAT
2081 GAGCCACCGCACCCGGCCGGTTTTCTACAGTTTTCTAATACTCAAGATGTTGACTTTGACAATACTTATGTTTGTATACT
2161 TGTAATCTTATAATGGGGAAAATGTGTATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCTTAATGCCTTGAA
2241 GGGAAGATTTGCTGTCCAGCTTGAATGCTCATTCTTGGGTCAGTGCCTGTCTAACCTTGAGGAGCATTTCATTTTCAGGT
2321 TATCTCCATCCCAGGGAAACCCTCTGGGTCTAAACTGAGAAGCTGCTGCAATTGTCCCCTCACTGGCTTCTCAGTCCTAG
2401 TGAATTGATCAAGTTAACTTACCAAGTGGTTTGGGTTCAGCTCAGGTGAAGAGGATAATTGAGTTTACATAAATGGTACC
2481 TTCTATTATAGCTCTTTGTTTAAAAAACTTATTTTTTAGAGACAGTCTCATTCTGTTGCCCAGGTTAGAGTGCAGTGGCA
2561 CAATCATAGCTCACTGTACCCTTGAACTCCTGGGCTTCAGCATCCTCCTTCCTCAACCTTTGGAATAGCTGGGCCACATT
2641 ACAGGCATATGCCACCATGCCCAGCTAATTATTTTATTTTAGTAGAGACAGGGTCTTGCTGTGTTGCCCCAGCTGATCTT
2721 GAACTCCTGGCCTCAAGTAATCCTCCCACCTTGGCCTCCCAAAATGCTGGGGTCACAGGCTCAGCCACCATGCCCAGCCT
2801 GTTACAGCTTTGATTGGCCTTTCTCTTTAGCTAAGTTTGTATGTACTTCATTTTATCCATGGGTTCAAGATACATGTTTT
2881 TGCCTCTTTCTTTGAACTCTCTAAACAGTTCCCAAGGCAAAGTAGCCCTTGCTGGGCAAAAGAGAACTGAGCAGGAAGGC
2961 TAGATATTTCTTCCCTCTTGTTTCCCTACATGTCTTTTGAGGAGAGATAGAAAAGACAATTGGAATTGACAACTGAGGAT
3041 AAGAAAATTCAGCCAGGTCCGGTGGCTCACGCCAGCACTTTAGGAGACTGAGGTGGGTGCATTGCTTGAACTCAGGAGTT
3121 CGAGACCAGCCTGGGAAACATGGTGAAATCCCAACTCTAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAATTAGTGCCT
3201 GAGAAATCCAGGGAGAAAATGGTTTCTGGGCTGGGCGTGGTGGCTTATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGG
3281 CAGCTGGATCACCTAAGGTCAGGAGTTGGAGACCAGACTGACCAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAA
3361 ATCAGCCAGGCTTGGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAAGAGAATTGCTTGAACCTGG
3441 GAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCTCTCCAGCATGGGCGACAGAGTGAGACTCCCTCTCAAAAAAA
3521 AAAAGAAAGAAAGAAAATGGTTTCTGATTGAGGCTCCTGGGAGAAAGCACTCTTTGGAGAAAGAAAACTTGAGTCAAACT
3601 CTGGGTTACTTTTCCTTATGCCAGGATGGCTGCTATAAAGTAAGCTAAGCCTTGATCTTGGTAACAGGATTGACATGGAC
3681 AGTTTCAATCTGACCCATATGCCCTTTGCCCAAAGCACTGAGCCAGCAGCATCAGTTATGTTTTAATGAAATTGAAGCCC
3761 CAGGACCTGCCACTATGGCTCTGAGGAGGACTCAGCTTCACTAGCTTGGAAATTACATATTTGGAGGGATGAGAGCCCAT
3841 GAGTGTGGGAGATAGGGTAGGCTCAGTGTCAGTGTTTTTGTTTCTTCCTTGTTCCATACACTTGAGTAGGGATACATGGT
3921 ATTAACCTCTTTAAACAGGTCTCTAATTTCATCTCATTAATTCACAGTTGCACAGCCATACTAGGGTCTCTTCCATAAAC
4001 CATAAGATTTTATTCACCAAAGCTCTAGAGACAAGGTACTCAGATCTCTGTGGCATCCCTCATTTTCTCAACTGCTTCTC
4081 TACAAACTTCTCCTCACTTTGAGAGTTTCTAATGCTCAGGCTGGGAGACTTTTTAGGGGGTGTTTTTGGTTTTTATCTCC
4161 TAGGGTTATGTCTAATCACTCTTGTGGCATCCTGTCCTGGGATTTGTGCTCCTAAGGATAGAGGAGAGTATTTCTGGGAG
4241 GAGTGTTCCCATGATACTATTTGATTATGTCATCCTTGAGATGGTATTGTATCTTCTACCCTTATATCCTACTCATCGCC
4321 TGGCACACAGCTTGGAATGTAGTGGTGCCTACCACAGTTTGAATAAATAACACTACACCTTTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuagUGUUUACAG-----GAAUUAUc 5'
               |: ||| |:     ||||||| 
Target 5' tttgaATTAATTTTTGCTGCTTAATAa 3'
1179 - 1205 145.00 -7.40
2
miRNA  3' cuuAG-UGUUUACAGGAAUUAUc 5'
             || |:||||   ||||||: 
Target 5' tttTCAATAAAT---CTTAATGc 3'
2215 - 2234 140.00 -5.10
3
miRNA  3' cuuaGUGUUUACAGGAAUUAUc 5'
              ||| |  |  :|||||| 
Target 5' aggcCACCATGGAATTTAATAa 3'
1489 - 1510 134.00 -5.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31613467 3 COSMIC
COSN31564833 7 COSMIC
COSN31495347 65 COSMIC
COSN30473873 80 COSMIC
COSN30113233 133 COSMIC
COSN6034681 160 COSMIC
COSN31568839 165 COSMIC
COSN30470292 173 COSMIC
COSN31557933 182 COSMIC
COSN30159918 184 COSMIC
COSN30172111 215 COSMIC
COSN19365865 260 COSMIC
COSN23285871 269 COSMIC
COSN17227272 581 COSMIC
COSN9025836 753 COSMIC
COSN10047850 981 COSMIC
COSN23191162 1551 COSMIC
COSN6034680 1643 COSMIC
COSN10047849 1672 COSMIC
COSN28051359 1768 COSMIC
COSN24336060 1790 COSMIC
COSN23796157 1990 COSMIC
COSN21133949 2099 COSMIC
COSN26461359 2227 COSMIC
COSN5371410 2581 COSMIC
COSN26680512 2655 COSMIC
COSN23724864 3170 COSMIC
COSN29070284 3176 COSMIC
COSN22741159 3367 COSMIC
COSN22590627 3382 COSMIC
COSN17472412 3765 COSMIC
COSN17876760 3831 COSMIC
COSN18238275 3843 COSMIC
COSN6034679 3896 COSMIC
COSN20722196 4361 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1222265767 5 dbSNP
rs375903787 6 dbSNP
rs1288807994 12 dbSNP
rs565552761 15 dbSNP
rs1350771665 18 dbSNP
rs1159063049 21 dbSNP
rs763397781 26 dbSNP
rs773325926 32 dbSNP
rs1439554757 34 dbSNP
rs371300587 36 dbSNP
rs748383467 38 dbSNP
rs992181994 39 dbSNP
rs1404144526 40 dbSNP
rs781491936 50 dbSNP
rs112552223 51 dbSNP
rs1180008786 52 dbSNP
rs1437446163 62 dbSNP
rs1352614911 67 dbSNP
rs749921795 71 dbSNP
rs1487809580 74 dbSNP
rs964279392 89 dbSNP
rs192809591 100 dbSNP
rs78523522 102 dbSNP
rs1356217059 104 dbSNP
rs1015029236 107 dbSNP
rs1239671978 110 dbSNP
rs1307529832 113 dbSNP
rs1237956864 127 dbSNP
rs1331305653 134 dbSNP
rs1006700281 137 dbSNP
rs1372054166 139 dbSNP
rs1328001869 149 dbSNP
rs760478426 150 dbSNP
rs887975208 154 dbSNP
rs1157758157 160 dbSNP
rs1349753092 165 dbSNP
rs764708283 167 dbSNP
rs532732031 170 dbSNP
rs996261073 173 dbSNP
rs999618745 177 dbSNP
rs1402760296 182 dbSNP
rs906576949 185 dbSNP
rs1024994943 199 dbSNP
rs1489550522 203 dbSNP
rs1284388862 205 dbSNP
rs1406269778 218 dbSNP
rs1012230535 223 dbSNP
rs1276205935 229 dbSNP
rs1230441107 230 dbSNP
rs1344389869 235 dbSNP
rs1278260402 238 dbSNP
rs902111601 246 dbSNP
rs1338294536 254 dbSNP
rs895129432 263 dbSNP
rs1414773175 272 dbSNP
rs1395371241 277 dbSNP
rs1055751717 278 dbSNP
rs1192951877 278 dbSNP
rs1208436744 278 dbSNP
rs1428755210 278 dbSNP
rs766839954 278 dbSNP
rs80209680 278 dbSNP
rs941269460 278 dbSNP
rs1194942344 280 dbSNP
rs76829482 282 dbSNP
rs888327486 285 dbSNP
rs1443283997 293 dbSNP
rs1281158523 295 dbSNP
rs1040998284 296 dbSNP
rs1476761775 299 dbSNP
rs1201448354 307 dbSNP
rs1322371207 311 dbSNP
rs571863443 316 dbSNP
rs145987306 317 dbSNP
rs1448717878 321 dbSNP
rs149381331 322 dbSNP
rs929753495 328 dbSNP
rs543159373 329 dbSNP
rs188300886 330 dbSNP
rs1331937063 334 dbSNP
rs1040749603 338 dbSNP
rs1287651703 341 dbSNP
rs942397258 343 dbSNP
rs138774266 346 dbSNP
rs1467208722 347 dbSNP
rs989730139 351 dbSNP
rs541302349 354 dbSNP
rs1052218073 355 dbSNP
rs552080075 363 dbSNP
rs1305918440 368 dbSNP
rs958491215 373 dbSNP
rs924140705 384 dbSNP
rs764709815 385 dbSNP
rs558326298 386 dbSNP
rs980605981 395 dbSNP
rs150212867 405 dbSNP
rs1228878969 406 dbSNP
rs528674164 415 dbSNP
rs182540073 417 dbSNP
rs554208354 418 dbSNP
rs148086568 442 dbSNP
rs1449269396 445 dbSNP
rs1435789176 447 dbSNP
rs559936651 448 dbSNP
rs1175162933 449 dbSNP
rs746125383 450 dbSNP
rs1423834096 452 dbSNP
rs888329473 453 dbSNP
rs1444330439 454 dbSNP
rs375328292 463 dbSNP
rs1180196193 464 dbSNP
rs371371879 472 dbSNP
rs1231861998 479 dbSNP
rs774476657 492 dbSNP
rs1453290567 496 dbSNP
rs553530855 500 dbSNP
rs189925066 509 dbSNP
rs1485880205 512 dbSNP
rs1354073244 513 dbSNP
rs996313623 517 dbSNP
rs1040805764 520 dbSNP
rs1225731524 525 dbSNP
rs901995400 537 dbSNP
rs1437221240 539 dbSNP
rs1208308866 540 dbSNP
rs1352134935 543 dbSNP
rs1053829218 552 dbSNP
rs1311880072 556 dbSNP
rs1273765978 558 dbSNP
rs760022362 562 dbSNP
rs1216468421 564 dbSNP
rs936952169 568 dbSNP
rs1339066952 571 dbSNP
rs1019215773 573 dbSNP
rs924165610 588 dbSNP
rs1406741496 596 dbSNP
rs1191293367 601 dbSNP
rs1010890616 608 dbSNP
rs892162483 617 dbSNP
rs1198671379 619 dbSNP
rs1052526777 623 dbSNP
rs1287942257 627 dbSNP
rs770983651 629 dbSNP
rs571924483 641 dbSNP
rs936284585 650 dbSNP
rs1464207734 652 dbSNP
rs1358285700 661 dbSNP
rs903616238 662 dbSNP
rs1170518769 665 dbSNP
rs1411169660 666 dbSNP
rs1044810464 667 dbSNP
rs1404932987 670 dbSNP
rs1016283527 675 dbSNP
rs1291032210 682 dbSNP
rs947889319 687 dbSNP
rs950726663 702 dbSNP
rs1415820646 703 dbSNP
rs550506733 710 dbSNP
rs531908817 711 dbSNP
rs1478123292 714 dbSNP
rs567881746 719 dbSNP
rs549435701 728 dbSNP
rs1184572869 729 dbSNP
rs907909003 733 dbSNP
rs1237832726 735 dbSNP
rs985204401 736 dbSNP
rs952018078 739 dbSNP
rs922037348 740 dbSNP
rs1222941321 741 dbSNP
rs1233720476 743 dbSNP
rs1062047 749 dbSNP
rs1319245447 750 dbSNP
rs974778846 757 dbSNP
rs1206638897 760 dbSNP
rs527816471 761 dbSNP
rs1019521084 762 dbSNP
rs1006602938 772 dbSNP
rs1234418431 773 dbSNP
rs889504192 777 dbSNP
rs1010524549 778 dbSNP
rs186895712 779 dbSNP
rs1053475208 780 dbSNP
rs1168310817 782 dbSNP
rs1377919226 782 dbSNP
rs956490930 784 dbSNP
rs77242716 789 dbSNP
rs1298400927 790 dbSNP
rs1183357464 791 dbSNP
rs1414308361 791 dbSNP
rs879289482 791 dbSNP
rs61776919 799 dbSNP
rs1462842136 814 dbSNP
rs1241482958 815 dbSNP
rs1448303118 816 dbSNP
rs1397528985 817 dbSNP
rs1203116634 824 dbSNP
rs1330153656 831 dbSNP
rs1033233099 832 dbSNP
rs1225957093 834 dbSNP
rs936357783 835 dbSNP
rs1461866173 836 dbSNP
rs1370189605 839 dbSNP
rs1248574533 840 dbSNP
rs902164986 846 dbSNP
rs560528282 847 dbSNP
rs1423037458 857 dbSNP
rs545118754 858 dbSNP
rs533364241 859 dbSNP
rs1398094520 863 dbSNP
rs903498688 864 dbSNP
rs949615794 868 dbSNP
rs918094487 878 dbSNP
rs113039854 881 dbSNP
rs1011990559 899 dbSNP
rs543325845 906 dbSNP
rs1383629286 939 dbSNP
rs749375140 950 dbSNP
rs191223979 952 dbSNP
rs1214474900 954 dbSNP
rs1440542884 957 dbSNP
rs1252818043 959 dbSNP
rs1470209605 960 dbSNP
rs1264219150 964 dbSNP
rs1244438685 965 dbSNP
rs1194104953 985 dbSNP
rs1317932582 990 dbSNP
rs1266482747 991 dbSNP
rs1225206100 994 dbSNP
rs1357817227 1001 dbSNP
rs1056698865 1009 dbSNP
rs1307200335 1012 dbSNP
rs1241839135 1014 dbSNP
rs1314790684 1015 dbSNP
rs938092970 1019 dbSNP
rs1337139049 1025 dbSNP
rs772609490 1027 dbSNP
rs1304257313 1034 dbSNP
rs575801090 1041 dbSNP
rs1390271741 1051 dbSNP
rs768605463 1056 dbSNP
rs1304816150 1071 dbSNP
rs554368177 1078 dbSNP
rs147115513 1079 dbSNP
rs1374246831 1081 dbSNP
rs1454527037 1091 dbSNP
rs1048942666 1100 dbSNP
rs930667876 1109 dbSNP
rs1330085929 1111 dbSNP
rs746770195 1130 dbSNP
rs373701877 1131 dbSNP
rs1392715821 1135 dbSNP
rs1489994249 1140 dbSNP
rs974831096 1141 dbSNP
rs1457182171 1142 dbSNP
rs1345546379 1153 dbSNP
rs779758263 1161 dbSNP
rs911939609 1162 dbSNP
rs1258512509 1170 dbSNP
rs989394820 1172 dbSNP
rs372801274 1182 dbSNP
rs771560539 1190 dbSNP
rs550829367 1191 dbSNP
rs1331235865 1203 dbSNP
rs1379986634 1207 dbSNP
rs1194277503 1208 dbSNP
rs973062558 1218 dbSNP
rs956206825 1221 dbSNP
rs1033700360 1246 dbSNP
rs1298619018 1258 dbSNP
rs1402165823 1260 dbSNP
rs1157109444 1263 dbSNP
rs1453319547 1265 dbSNP
rs1430121221 1269 dbSNP
rs369967460 1270 dbSNP
rs1479755477 1273 dbSNP
rs1268748873 1274 dbSNP
rs1019418659 1276 dbSNP
rs6660890 1276 dbSNP
rs1260066938 1287 dbSNP
rs1023299933 1290 dbSNP
rs1204247160 1296 dbSNP
rs529299397 1310 dbSNP
rs1345241756 1318 dbSNP
rs7530222 1319 dbSNP
rs1209795761 1323 dbSNP
rs1486506795 1337 dbSNP
rs1322743167 1339 dbSNP
rs1278703490 1345 dbSNP
rs1262831871 1346 dbSNP
rs1432797868 1359 dbSNP
rs529078895 1363 dbSNP
rs896227880 1364 dbSNP
rs1056188788 1373 dbSNP
rs1407047895 1385 dbSNP
rs902217727 1393 dbSNP
rs1468236417 1412 dbSNP
rs1308090813 1416 dbSNP
rs1234291978 1417 dbSNP
rs1169054992 1420 dbSNP
rs1476670623 1423 dbSNP
rs1332345798 1425 dbSNP
rs1371738568 1427 dbSNP
rs1005142005 1429 dbSNP
rs141817844 1431 dbSNP
rs1048995448 1434 dbSNP
rs1461517812 1443 dbSNP
rs1386117188 1455 dbSNP
rs571280600 1457 dbSNP
rs1460536913 1464 dbSNP
rs896713949 1471 dbSNP
rs1216299417 1483 dbSNP
rs1299797728 1486 dbSNP
rs930553043 1493 dbSNP
rs1417646655 1495 dbSNP
rs1360063028 1518 dbSNP
rs1383806654 1521 dbSNP
rs1174533240 1530 dbSNP
rs1467607018 1533 dbSNP
rs778629066 1534 dbSNP
rs1405522633 1537 dbSNP
rs1198296384 1544 dbSNP
rs1039011274 1547 dbSNP
rs944687826 1551 dbSNP
rs1394901027 1555 dbSNP
rs1167706503 1559 dbSNP
rs756765732 1564 dbSNP
rs543374930 1567 dbSNP
rs753418511 1584 dbSNP
rs929367384 1587 dbSNP
rs988890451 1597 dbSNP
rs1443599983 1602 dbSNP
rs934849749 1605 dbSNP
rs1488168645 1606 dbSNP
rs976026270 1611 dbSNP
rs1284812559 1614 dbSNP
rs965283094 1621 dbSNP
rs926099024 1624 dbSNP
rs111674418 1625 dbSNP
rs970296199 1637 dbSNP
rs985331040 1638 dbSNP
rs1231970061 1656 dbSNP
rs1312638191 1672 dbSNP
rs1244105243 1673 dbSNP
rs1382276665 1689 dbSNP
rs1307950385 1691 dbSNP
rs751972732 1692 dbSNP
rs1397866698 1693 dbSNP
rs1334528507 1699 dbSNP
rs954048781 1706 dbSNP
rs609070 1707 dbSNP
rs1397972637 1715 dbSNP
rs1001026925 1716 dbSNP
rs990493766 1718 dbSNP
rs1423632167 1738 dbSNP
rs1408214194 1739 dbSNP
rs761303151 1743 dbSNP
rs1178435857 1751 dbSNP
rs1468105222 1753 dbSNP
rs1231801353 1766 dbSNP
rs1400416110 1769 dbSNP
rs1172054528 1773 dbSNP
rs1021056152 1778 dbSNP
rs1221392036 1782 dbSNP
rs1462575033 1783 dbSNP
rs1426324256 1784 dbSNP
rs1285153845 1789 dbSNP
rs1348720140 1790 dbSNP
rs778519048 1790 dbSNP
rs1347889030 1795 dbSNP
rs1406148768 1795 dbSNP
rs1169197719 1797 dbSNP
rs1477670191 1800 dbSNP
rs1356786422 1801 dbSNP
rs1345431988 1804 dbSNP
rs1025569950 1805 dbSNP
rs1398588768 1806 dbSNP
rs745810715 1806 dbSNP
rs762025593 1806 dbSNP
rs754662734 1807 dbSNP
rs1176490750 1808 dbSNP
rs761823903 1808 dbSNP
rs1198441248 1809 dbSNP
rs1266631609 1809 dbSNP
rs1013237281 1810 dbSNP
rs1243632979 1810 dbSNP
rs1486107512 1810 dbSNP
rs1224157945 1812 dbSNP
rs1326287076 1816 dbSNP
rs1281865997 1819 dbSNP
rs201129964 1819 dbSNP
rs71062891 1819 dbSNP
rs1306395381 1820 dbSNP
rs1363355882 1820 dbSNP
rs1258625191 1823 dbSNP
rs1190135501 1827 dbSNP
rs1443775883 1831 dbSNP
rs1426578587 1857 dbSNP
rs620296 1863 dbSNP
rs186998662 1864 dbSNP
rs1339524603 1866 dbSNP
rs1421456106 1869 dbSNP
rs1259861284 1870 dbSNP
rs1485035154 1881 dbSNP
rs1216701956 1886 dbSNP
rs1002453228 1887 dbSNP
rs960379048 1890 dbSNP
rs1210078801 1897 dbSNP
rs534295675 1902 dbSNP
rs1049194678 1905 dbSNP
rs1338860354 1911 dbSNP
rs1035205731 1914 dbSNP
rs1004622535 1915 dbSNP
rs1454244546 1928 dbSNP
rs1391996761 1933 dbSNP
rs1403323780 1935 dbSNP
rs144795256 1951 dbSNP
rs767828773 1965 dbSNP
rs551861142 1973 dbSNP
rs1027440485 1983 dbSNP
rs919325671 1984 dbSNP
rs1329447151 1987 dbSNP
rs994587918 1995 dbSNP
rs1427644625 1996 dbSNP
rs866181753 1999 dbSNP
rs1385617938 2000 dbSNP
rs182021554 2006 dbSNP
rs1446637767 2010 dbSNP
rs1038901000 2014 dbSNP
rs1199891606 2017 dbSNP
rs944725737 2019 dbSNP
rs890444769 2025 dbSNP
rs1053642706 2027 dbSNP
rs934755586 2045 dbSNP
rs926149950 2046 dbSNP
rs553161987 2050 dbSNP
rs1247785258 2051 dbSNP
rs1380063711 2060 dbSNP
rs1311428463 2064 dbSNP
rs149185937 2077 dbSNP
rs985383408 2083 dbSNP
rs1429021669 2088 dbSNP
rs1366002679 2094 dbSNP
rs916183720 2095 dbSNP
rs993077200 2098 dbSNP
rs1457975514 2115 dbSNP
rs144966764 2133 dbSNP
rs1034682649 2135 dbSNP
rs983644131 2139 dbSNP
rs531543278 2140 dbSNP
rs149902726 2148 dbSNP
rs774371380 2149 dbSNP
rs1252735509 2159 dbSNP
rs925117620 2161 dbSNP
rs1483004851 2162 dbSNP
rs1457250837 2166 dbSNP
rs1270084208 2188 dbSNP
rs1027323558 2189 dbSNP
rs1225133949 2193 dbSNP
rs1356829918 2197 dbSNP
rs1264439368 2205 dbSNP
rs1239302840 2210 dbSNP
rs577647109 2212 dbSNP
rs542413181 2214 dbSNP
rs572217117 2222 dbSNP
rs900323426 2225 dbSNP
rs1211340147 2228 dbSNP
rs1017500529 2229 dbSNP
rs1354031538 2234 dbSNP
rs1283766994 2241 dbSNP
rs1304760433 2249 dbSNP
rs780036831 2255 dbSNP
rs1008804582 2265 dbSNP
rs1402794260 2279 dbSNP
rs35253145 2317 dbSNP
rs890488385 2319 dbSNP
rs1053123589 2322 dbSNP
rs999224258 2327 dbSNP
rs1454476347 2337 dbSNP
rs1379444743 2344 dbSNP
rs966882886 2357 dbSNP
rs1020743372 2358 dbSNP
rs1446149617 2367 dbSNP
rs1013331783 2369 dbSNP
rs539123596 2371 dbSNP
rs146650981 2374 dbSNP
rs1205395445 2380 dbSNP
rs1486629678 2381 dbSNP
rs1258457407 2394 dbSNP
rs1002463333 2397 dbSNP
rs1324187138 2404 dbSNP
rs1285049054 2405 dbSNP
rs1221595904 2410 dbSNP
rs948889398 2412 dbSNP
rs1330367344 2417 dbSNP
rs1318705588 2428 dbSNP
rs536705820 2434 dbSNP
rs1383017387 2440 dbSNP
rs143494039 2449 dbSNP
rs1318628074 2459 dbSNP
rs1057513144 2461 dbSNP
rs1381840553 2463 dbSNP
rs1179295986 2471 dbSNP
rs115417360 2481 dbSNP
rs571585785 2492 dbSNP
rs1477307439 2502 dbSNP
rs139953459 2508 dbSNP
rs897976524 2522 dbSNP
rs773313900 2526 dbSNP
rs1438540856 2538 dbSNP
rs1194285406 2544 dbSNP
rs1429961559 2556 dbSNP
rs538529146 2563 dbSNP
rs1207567712 2568 dbSNP
rs1461422575 2575 dbSNP
rs1264450487 2579 dbSNP
rs1201750312 2582 dbSNP
rs1040469937 2583 dbSNP
rs1270586768 2584 dbSNP
rs944791632 2586 dbSNP
rs768552473 2587 dbSNP
rs1328441540 2592 dbSNP
rs1295751614 2593 dbSNP
rs574432329 2598 dbSNP
rs1406977348 2600 dbSNP
rs1338756068 2602 dbSNP
rs1223706024 2619 dbSNP
rs556027672 2636 dbSNP
rs910556657 2638 dbSNP
rs534090608 2647 dbSNP
rs1476558850 2650 dbSNP
rs1388688944 2653 dbSNP
rs1187609132 2654 dbSNP
rs375988658 2655 dbSNP
rs1184732922 2665 dbSNP
rs897846705 2669 dbSNP
rs1273559563 2682 dbSNP
rs551553647 2695 dbSNP
rs539571350 2696 dbSNP
rs57220608 2698 dbSNP
rs973109781 2704 dbSNP
rs979742650 2713 dbSNP
rs191456058 2715 dbSNP
rs370462989 2717 dbSNP
rs529255860 2729 dbSNP
rs746973000 2730 dbSNP
rs560986407 2740 dbSNP
rs186653891 2756 dbSNP
rs779890645 2758 dbSNP
rs1369136826 2764 dbSNP
rs1168304091 2773 dbSNP
rs1424939797 2774 dbSNP
rs1386640293 2775 dbSNP
rs527467577 2786 dbSNP
rs11264195 2789 dbSNP
rs1472211900 2791 dbSNP
rs1183956285 2805 dbSNP
rs1482020963 2807 dbSNP
rs1250827884 2814 dbSNP
rs757325593 2819 dbSNP
rs1360442929 2825 dbSNP
rs1292221080 2835 dbSNP
rs1421916398 2836 dbSNP
rs1355811027 2841 dbSNP
rs1043191778 2846 dbSNP
rs1263860863 2850 dbSNP
rs1012997513 2856 dbSNP
rs894686177 2858 dbSNP
rs1405875984 2871 dbSNP
rs1057301345 2878 dbSNP
rs1033357687 2882 dbSNP
rs1001853238 2889 dbSNP
rs1361988494 2892 dbSNP
rs1027935939 2894 dbSNP
rs562040201 2894 dbSNP
rs938813199 2901 dbSNP
rs994148906 2903 dbSNP
rs908805116 2906 dbSNP
rs1418508117 2923 dbSNP
rs1019032615 2925 dbSNP
rs573065494 2935 dbSNP
rs1244756383 2937 dbSNP
rs146005131 2948 dbSNP
rs1451227345 2955 dbSNP
rs1285086492 2956 dbSNP
rs1230236314 2958 dbSNP
rs562463913 2959 dbSNP
rs1288338038 2964 dbSNP
rs1246068794 2971 dbSNP
rs181291808 2973 dbSNP
rs936041699 2978 dbSNP
rs1435337547 2980 dbSNP
rs973163570 2984 dbSNP
rs1319721363 2986 dbSNP
rs1455132677 2991 dbSNP
rs1261241511 2992 dbSNP
rs1043685019 2994 dbSNP
rs1177145073 2994 dbSNP
rs1216141038 3003 dbSNP
rs1313044378 3006 dbSNP
rs964429097 3008 dbSNP
rs1190360450 3016 dbSNP
rs1477827118 3018 dbSNP
rs573590633 3029 dbSNP
rs1280825727 3038 dbSNP
rs555749534 3044 dbSNP
rs1210811013 3059 dbSNP
rs987330399 3060 dbSNP
rs376892752 3061 dbSNP
rs939100845 3070 dbSNP
rs1031607491 3078 dbSNP
rs573333270 3081 dbSNP
rs977322975 3086 dbSNP
rs1298023005 3093 dbSNP
rs968739350 3096 dbSNP
rs1299438955 3105 dbSNP
rs1398972317 3112 dbSNP
rs1432434516 3121 dbSNP
rs141747656 3134 dbSNP
rs980916574 3135 dbSNP
rs942146927 3139 dbSNP
rs889195605 3149 dbSNP
rs1051070918 3156 dbSNP
rs1412266658 3158 dbSNP
rs1424328688 3159 dbSNP
rs57561208 3159 dbSNP
rs1027731635 3165 dbSNP
rs1190794874 3166 dbSNP
rs972346197 3168 dbSNP
rs1478792542 3169 dbSNP
rs77749164 3170 dbSNP
rs1019084955 3171 dbSNP
rs202083923 3171 dbSNP
rs1008998207 3172 dbSNP
rs1308512622 3172 dbSNP
rs1192759854 3173 dbSNP
rs1225784405 3173 dbSNP
rs1315176979 3174 dbSNP
rs1222789867 3176 dbSNP
rs1284565821 3176 dbSNP
rs1302263117 3176 dbSNP
rs1372236828 3176 dbSNP
rs1376329048 3176 dbSNP
rs1442797121 3176 dbSNP
rs369315983 3176 dbSNP
rs1029110617 3177 dbSNP
rs1000683595 3180 dbSNP
rs1021632345 3180 dbSNP
rs904523909 3181 dbSNP
rs1042075437 3182 dbSNP
rs539533419 3183 dbSNP
rs1259207060 3185 dbSNP
rs1220980024 3186 dbSNP
rs1246528175 3187 dbSNP
rs1489292481 3187 dbSNP
rs988403797 3187 dbSNP
rs1224296949 3193 dbSNP
rs1352216543 3194 dbSNP
rs1012882790 3195 dbSNP
rs568965996 3196 dbSNP
rs1305962480 3202 dbSNP
rs1408928438 3206 dbSNP
rs1365945865 3207 dbSNP
rs1294403243 3210 dbSNP
rs758896720 3212 dbSNP
rs188488296 3213 dbSNP
rs535426247 3215 dbSNP
rs1164112345 3217 dbSNP
rs373621945 3231 dbSNP
rs144306073 3236 dbSNP
rs527617715 3237 dbSNP
rs1180635539 3260 dbSNP
rs1003060172 3265 dbSNP
rs1056375648 3271 dbSNP
rs1270012071 3280 dbSNP
rs1211318167 3297 dbSNP
rs887258282 3298 dbSNP
rs1264388431 3304 dbSNP
rs566540137 3304 dbSNP
rs1239059364 3305 dbSNP
rs1331150769 3308 dbSNP
rs939195634 3311 dbSNP
rs1304263157 3312 dbSNP
rs926435724 3319 dbSNP
rs1047339620 3328 dbSNP
rs1345951561 3336 dbSNP
rs980587199 3339 dbSNP
rs1404694048 3340 dbSNP
rs753365476 3348 dbSNP
rs113134659 3361 dbSNP
rs898877000 3368 dbSNP
rs1467121776 3370 dbSNP
rs920283124 3374 dbSNP
rs1421466815 3378 dbSNP
rs1457891280 3379 dbSNP
rs1390920708 3385 dbSNP
rs1157640552 3403 dbSNP
rs1037332219 3407 dbSNP
rs1424178647 3411 dbSNP
rs943004472 3416 dbSNP
rs910316302 3420 dbSNP
rs1201414512 3422 dbSNP
rs1416173999 3422 dbSNP
rs987603651 3444 dbSNP
rs1266161561 3453 dbSNP
rs111666288 3456 dbSNP
rs1205337682 3458 dbSNP
rs962290013 3462 dbSNP
rs1019181042 3463 dbSNP
rs1472620058 3469 dbSNP
rs933196191 3470 dbSNP
rs1208079440 3478 dbSNP
rs1238833676 3480 dbSNP
rs924431566 3487 dbSNP
rs953583329 3491 dbSNP
rs1029534447 3492 dbSNP
rs1257984882 3493 dbSNP
rs1000292083 3495 dbSNP
rs977375046 3509 dbSNP
rs969177443 3513 dbSNP
rs1457210158 3515 dbSNP
rs968624954 3518 dbSNP
rs1021515923 3520 dbSNP
rs551648819 3521 dbSNP
rs1226230718 3522 dbSNP
rs533164529 3523 dbSNP
rs1003458777 3525 dbSNP
rs1056428934 3525 dbSNP
rs1450914878 3525 dbSNP
rs958931787 3525 dbSNP
rs1187340666 3529 dbSNP
rs1035801357 3533 dbSNP
rs1442937306 3537 dbSNP
rs905029054 3538 dbSNP
rs1003358735 3540 dbSNP
rs1309339180 3553 dbSNP
rs1251651971 3561 dbSNP
rs1229442418 3562 dbSNP
rs373776338 3563 dbSNP
rs1295504665 3566 dbSNP
rs920316783 3567 dbSNP
rs1434394853 3569 dbSNP
rs1397937577 3570 dbSNP
rs1297568026 3572 dbSNP
rs1036095713 3574 dbSNP
rs887319275 3581 dbSNP
rs1401997620 3588 dbSNP
rs1169563253 3596 dbSNP
rs562527486 3603 dbSNP
rs1423457923 3604 dbSNP
rs1381213509 3616 dbSNP
rs1238671786 3620 dbSNP
rs987683719 3626 dbSNP
rs953594267 3632 dbSNP
rs1180521294 3653 dbSNP
rs1308582003 3662 dbSNP
rs1252312261 3665 dbSNP
rs1206950862 3675 dbSNP
rs544339534 3676 dbSNP
rs528853606 3688 dbSNP
rs1272828252 3699 dbSNP
rs183767527 3701 dbSNP
rs1214202328 3710 dbSNP
rs922135016 3711 dbSNP
rs1489777867 3719 dbSNP
rs536474136 3724 dbSNP
rs1039904651 3739 dbSNP
rs1221374268 3752 dbSNP
rs1340349491 3759 dbSNP
rs935552035 3765 dbSNP
rs1309022900 3775 dbSNP
rs1411999667 3781 dbSNP
rs1286295853 3787 dbSNP
rs1241630377 3804 dbSNP
rs1369080082 3808 dbSNP
rs968895125 3812 dbSNP
rs1405573169 3814 dbSNP
rs1415359708 3820 dbSNP
rs888762293 3821 dbSNP
rs1412553358 3833 dbSNP
rs1020815867 3835 dbSNP
rs1481990895 3837 dbSNP
rs1051556429 3843 dbSNP
rs1204148589 3844 dbSNP
rs1010316851 3849 dbSNP
rs933061608 3853 dbSNP
rs924345432 3855 dbSNP
rs868439925 3864 dbSNP
rs753211105 3865 dbSNP
rs1208069040 3866 dbSNP
rs1334781270 3873 dbSNP
rs947173522 3874 dbSNP
rs1230767749 3881 dbSNP
rs540551803 3891 dbSNP
rs1288064749 3896 dbSNP
rs1345281802 3910 dbSNP
rs1436791908 3914 dbSNP
rs1351193092 3919 dbSNP
rs1321030316 3929 dbSNP
rs1361369332 3935 dbSNP
rs914508243 3939 dbSNP
rs370495540 3940 dbSNP
rs1003470107 3941 dbSNP
rs573520050 3967 dbSNP
rs1388729183 3971 dbSNP
rs905081031 3978 dbSNP
rs1471554877 3986 dbSNP
rs1418154417 4020 dbSNP
rs567674968 4029 dbSNP
rs1044924751 4047 dbSNP
rs1176968701 4049 dbSNP
rs180822351 4055 dbSNP
rs1197006318 4061 dbSNP
rs573745578 4062 dbSNP
rs558035881 4072 dbSNP
rs898987622 4075 dbSNP
rs1036107383 4089 dbSNP
rs1284013592 4092 dbSNP
rs545950971 4094 dbSNP
rs940403454 4096 dbSNP
rs958764405 4101 dbSNP
rs1272787543 4102 dbSNP
rs1439671194 4104 dbSNP
rs1488837599 4106 dbSNP
rs1263390769 4119 dbSNP
rs928620891 4122 dbSNP
rs1218308354 4124 dbSNP
rs1351100687 4129 dbSNP
rs1051341949 4135 dbSNP
rs1259623643 4136 dbSNP
rs1416018227 4145 dbSNP
rs932269553 4149 dbSNP
rs190645289 4157 dbSNP
rs1453954731 4163 dbSNP
rs1248760278 4165 dbSNP
rs1313823546 4177 dbSNP
rs951551520 4179 dbSNP
rs1242108218 4182 dbSNP
rs557009395 4195 dbSNP
rs979023036 4201 dbSNP
rs1314352034 4209 dbSNP
rs1025650816 4220 dbSNP
rs1276923572 4234 dbSNP
rs115579550 4235 dbSNP
rs1342382621 4243 dbSNP
rs962829251 4244 dbSNP
rs1340874442 4251 dbSNP
rs1432188916 4251 dbSNP
rs568348622 4253 dbSNP
rs1299850610 4254 dbSNP
rs1398381343 4259 dbSNP
rs1018506410 4273 dbSNP
rs766550270 4279 dbSNP
rs913396977 4281 dbSNP
rs1384601965 4284 dbSNP
rs553372239 4285 dbSNP
rs888825764 4289 dbSNP
rs138307400 4295 dbSNP
rs1035708115 4309 dbSNP
rs1390957790 4317 dbSNP
rs1376392283 4327 dbSNP
rs1176360479 4330 dbSNP
rs997157105 4338 dbSNP
rs1447808407 4347 dbSNP
rs980076609 4355 dbSNP
rs902946398 4361 dbSNP
rs1484495060 4366 dbSNP
rs1041462360 4374 dbSNP
rs1236112885 4374 dbSNP
rs1210526547 4376 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 63967.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001190481 | 3UTR | CAUGGAAUUUAAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000318121.3 | 3UTR | AAUUAAUUUUUGCUGCUUAAUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000318121.3 | 3UTR | AAUUAAUUUUUGCUGCUUAAUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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