pre-miRNA Information
pre-miRNA hsa-mir-873   
Genomic Coordinates chr9: 28888879 - 28888955
Synonyms MIRN873, hsa-mir-873, MIR873
Description Homo sapiens miR-873 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-873-3p
Sequence 46| GGAGACUGAUGAGUUCCCGGGA |67
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760528397 3 dbSNP
rs773403294 9 dbSNP
rs1273846238 13 dbSNP
rs1339396073 15 dbSNP
rs1247999695 18 dbSNP
rs377380148 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ERCC4   
Synonyms ERCC11, FANCQ, RAD1, XFEPS, XPF
Description ERCC excision repair 4, endonuclease catalytic subunit
Transcript NM_005236   
Expression
Putative miRNA Targets on ERCC4
3'UTR of ERCC4
(miRNA target sites are highlighted)
>ERCC4|NM_005236|3'UTR
   1 ACAGTGATGGCTGTTTTCTTATCCCATGCCTGTACTTTTCAGCGGCTCCTTGCCAGACATCATAGGTCATTATTAATTAT
  81 TGGTTTGCTATTTCATTCTTTTCCAATGCTCTTAATGATTGTACGGTGGACCAGAAGCCAGGATTCCTCTCTGAACTCTG
 161 CAGTTAGGCATCACTTGAACTTGCCTGTGCCTGCTCTTTTTCCTCCCTGCACCGTCTATGCCGGGCTTAGCATGTTTCTT
 241 TTTAAATGAGGTTTGTCAGGATCAGGTAAAGTTCCTACAAGTGATTACAGAAGGTAGAAACTTTACCTGATCCTAACAGA
 321 TCTCATTTAGAAAGGAATATGCTAAGCCTGGCATGGACGGTGCAGGGAGGGAAAAGAGCAGGCACAAGAAAGCTACCATT
 401 TTTAACAGTCCTTGTTATCTAGTGCAACATAAATAACAGTCTTAATTGCACTTATACCCATGTCCTGTGGCTCTCCAAAT
 481 CTGGTCTTTGCTGTTGTGTCTGCTGGACGCTTGAACTGATGTTTGTGTAGGAAATCATGTTCTGACCCTTTGTCTACAAA
 561 GGAGCCTTCTGGAACACTGAGAAGAAACATCTCTTTGCCATTCCTGACCAGTTCTCTCTACCACATTTTCTTCAGCTCCA
 641 TACTTCTGCCTGTCTGCTCTAAGGAAATTTCATGGAGCCTTCCTACTACTAATTCAAGACAGTCTCCTCAAAAACTGGTT
 721 GACTAGTCTTCTAATGACCCTAACATATGTAGCATATACTATAATTTCATTGTTCCAAATTAGTATTTTTAAAGCAAAAT
 801 GAATTACCTGTTTGCAAAAGTTAATGATGAAGGAGCTCTTAGAATTCTCAATTTTTGCACATATTCAGTCTCCTAATATC
 881 AGAGATCCCTAAGTCCAGCTGGCTAGTTACAGAGTTTTTTCAGACTTCCTCGTTTCTCAGCTCTTATATCCTAAGACACC
 961 AGCATCATATCCTCTAGAAATACAACCTAATTGGCAGTGAGCCGAGATCGCACCACTGCACCCCTGCCTGGGCGACAGAG
1041 TGAGACTTTGTCTCTATTACAAAAAGAAAAGAAAAGAAATACAACCTAAGCTCACCTGCCTGTGATTCCTCATTTCTCAC
1121 CATCCTGTGCCAGGGTGGCTACTTCTCTCTGTGAGGACTCAAATACAAGCCAATGAGTGGCCCACTAAGCTTTTAAGATT
1201 TGATTTTCCTGCCTTGAGATAAAAAGGAGTGTAGGTAAATGAAAGATCAATGTATGGAATATATAAAAATACGAAAGAAA
1281 TATATACGTTTAAAAATCCATAAAGAAAAAAATCTCATTCTAAACCTGATTAAGTTGGCTTTTTACGTAAGTGTACAAAT
1361 AGGATATTCACAGCATCTTTGTGCAGTTTTTAAACTTTTATATTTAAACATTATTAAGTTGGCTTTTGTTCACATGTTGA
1441 GTAATGGGTAGTAAATTTTCTACCTCAGGAGCTGATATAGACATCAGTTCTGCTAGCCATATCACATATTTTAATGTTTC
1521 ATCAACATCAGCTGTTTTTTTGTTTGCTACACTATTTGAACTAATAGACAGTGGATCATGTAACACAAAATTGTCTTCAA
1601 CTTTAACAAAATTGTCATTGTTATTTTTTTTTGAGACAGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAAT
1681 CTCGGCTCACTGCAACCTCGCCTGCTGGGTTCAAGCAGTTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTATAGGTGT
1761 GCACCACCAGACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTAC
1841 TGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGAGATAACAGGCGTGAGCCACCGCACCCACCCAACAAAA
1921 TTATTTTTAACTGTCGTTTCTGAACTGAACCTCTCACATTGGCATCTTGATTTATTGGTACTTAACAGTATATATGGATT
2001 TTGAACTCTACACAAGGGTATAACCAGAATGAATTGAGGGGTATCAAGAACCAGATTGGTTACAGTAGAACTCTGTAAGA
2081 TGATGTGGAGAGTAAGGAAAAGGAGAAGAAATAAAAATTAGTTTAAGATGGAATAAAGATTTGGGCTGCTAATTTTTTCC
2161 CAGGATTCAAAATATACCCGCTAGAATGGAAAACAAAAATTTGAATGATTACAACATTATCGTTAACATTCAATTTTGTA
2241 TTTATTGTTTTATTGAATATAGTTCAGAGTATATTAAAATAGACCTACCACTTCAAATGATAATGATTATTATAATGTCT
2321 CTTCACCCTATTCTAGCACTTCTGCTTGCAGTATGTGGTTTCTATTTTTTTCCTCTTGTATAATTCCACTTGCTTTTAAT
2401 TGTTGTTTCATTATATAAAAGGAACATCTTCCCATAGCATATTCTATGAAAGGGGTTTCATTCCAAGTTGAGTTTTCAAA
2481 AAAAAGGTCTTCCTAAAGCTACCATTTTCAACCGTCCTTGTTATCTAGTACAACATAAATAACAGTCTTAAAAATTGCAC
2561 TAATACCAGTGCCCCCCTGGCTCTCCAAATCTGTTCTTTGCTCTTGTATCTGCTGGACGCTTGAAGACAGGTGCACTGTC
2641 TCGTATGTATTTGAATTATGAACAGTAATTTCTAATGAATTCTAAAATGGTCATTGTAAGTGAAAGCCTCTCGCTACCAC
2721 TTCCTCTTCCAACTACATAAATATATTTCAATGTATTTCCAGTTTTGGAAAGTTTTCAATACATACATCAAGTGTTTACT
2801 TAGATTTTTATAAAAATTTTTTTTACAATCTAATAATCTTTGGTAAAGGAACTAGAGATGCATGCAGTTGCAAAATTAAT
2881 GTATTTATTTTCCAGCATAATTTTATTAACTTCACTTTTTTTCTCTCTAGTAAATATCCAGTGTACTTATGAACTCATGT
2961 TTGGCTCTTTTAAAACCTTTTCTAAAAGCTAGATCAGCATTTTTCTATTTTACAAGTTTTTTGTATAAAAAGGTGAACAT
3041 ATGAGATATTGTGAGAAATCATTTTAAGTTTCATTTAAATCATGGTGCCTCTTTTGATACTTTCTTAAAATTGTGCAAGA
3121 AGAAATCATTTTTAGTAGTGGTCATAAATATTATCCTTTTGGCAGTAAGCTATTACTAATTCAGCCTGAAGCTCGGTAGA
3201 CAATATGTCTACATGTGTTTGAGTACATCCTGGATACAGTTTCCCAGCTCATGAGGGACTGAAAATAGTCTTATTCATCA
3281 ACCCACTAGGATGTGAAGGGTTAAGTCTAGATTTGGTCGCATTGAAACCCCACAATATAGAATTAATAAATGGCCTTCAG
3361 TAGGAAAACCTACACTAAAGCAAATCCGAAGAAGTGGGGCAGGGGGAAAGAGGCATTACTGGTCTTTCCTTTTGTTTTGC
3441 AAGCATAATTTGATTTTCCTTTGGCTCAGAAAACTCATTTGGGGAAATTCTCTTTTGTGTTCAGTTTAACCTAGAAAGGT
3521 CCTCTTGAAAAACCAACATTTTAGGAAAGTTCTTTTTTCAGGATGGAGTATATTAAAATTAAGCCAGGCTTTGACGTGAA
3601 TTATCACTTTTCTTTATTATTTTGTTTTCTATTTTGGTTTATAGCTATTTCTGGTTCAGTTCTGAACTTCAGCACTTAAT
3681 CATCCTTATCAACCAGGCTTTTGGTAGCCTAAACCGCTATGCTGTTGTTTTTTTAATTTAAAGATGTATAAGCCAAAATT
3761 TGGATGGGAGTGAGACATAACTGATTTATATGAATTTTAACAGAGTTGTATTTGTGTGTGTTTAATAAAATATATATTTA
3841 TTCAGTACTTTCCTCAGTATTTTATGGGCAAAGTAAAAATAACAATGCATAGTGAAAGGGCATATATTACCAGCAGTAAT
3921 AATTCAAAATCCTGAAAATGTTTCATTTTTTTTGTTTTTGTTATGCAGAATAAACAAGGCAGAAATGCTCTTTGAACCAC
4001 TAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agggcccUUGAGU--AGUCAGAGg 5'
                 ||:|||   ||||||| 
Target 5' tactactAATTCAAGACAGTCTCc 3'
684 - 707 153.00 -16.60
2
miRNA  3' agggccCUUGAGU-AGUCAGAGg 5'
                | || :| |||||||| 
Target 5' atttttGCACATATTCAGTCTCc 3'
851 - 873 152.00 -14.46
3
miRNA  3' agGGCCCUUGAGUAGUCAGAGg 5'
            || |||   :| ||||:|| 
Target 5' atCCTGGA---TA-CAGTTTCc 3'
3227 - 3244 132.00 -17.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
259682 12 ClinVar
885893 107 ClinVar
317825 151 ClinVar
317826 193 ClinVar
886886 219 ClinVar
317827 249 ClinVar
317828 249 ClinVar
317829 385 ClinVar
886887 412 ClinVar
317830 485 ClinVar
317831 540 ClinVar
317832 559 ClinVar
888165 631 ClinVar
317833 675 ClinVar
317834 676 ClinVar
888166 702 ClinVar
888167 713 ClinVar
317835 727 ClinVar
317836 746 ClinVar
317837 811 ClinVar
317838 860 ClinVar
317839 876 ClinVar
317840 948 ClinVar
317841 972 ClinVar
885044 1057 ClinVar
317842 1252 ClinVar
885045 1257 ClinVar
885956 1289 ClinVar
885957 1354 ClinVar
317843 1422 ClinVar
317844 1464 ClinVar
885958 1473 ClinVar
885959 1479 ClinVar
885960 1636 ClinVar
885961 1677 ClinVar
317845 1709 ClinVar
317846 1775 ClinVar
317847 1797 ClinVar
317848 1859 ClinVar
317849 1881 ClinVar
317850 1898 ClinVar
886961 1916 ClinVar
886962 1982 ClinVar
888225 2073 ClinVar
317851 2140 ClinVar
317852 2175 ClinVar
317853 2181 ClinVar
317854 2241 ClinVar
317855 2256 ClinVar
888226 2416 ClinVar
317856 2424 ClinVar
885110 2456 ClinVar
885111 2464 ClinVar
317857 2514 ClinVar
885112 2540 ClinVar
210953 2572 ClinVar
885113 2573 ClinVar
210952 2578 ClinVar
317858 2589 ClinVar
317859 2660 ClinVar
886026 2711 ClinVar
886027 2713 ClinVar
886028 2745 ClinVar
317860 2760 ClinVar
886029 2817 ClinVar
886030 2826 ClinVar
886031 2850 ClinVar
317861 2873 ClinVar
317862 2880 ClinVar
887024 2893 ClinVar
317863 3033 ClinVar
317864 3045 ClinVar
317865 3072 ClinVar
317866 3126 ClinVar
317867 3131 ClinVar
317868 3196 ClinVar
317869 3201 ClinVar
888290 3231 ClinVar
888291 3283 ClinVar
888292 3320 ClinVar
317870 3328 ClinVar
317871 3440 ClinVar
888293 3444 ClinVar
317872 3494 ClinVar
317873 3538 ClinVar
317874 3543 ClinVar
885188 3728 ClinVar
317875 3754 ClinVar
317876 3802 ClinVar
317877 3819 ClinVar
885189 3912 ClinVar
317878 3914 ClinVar
317879 3922 ClinVar
317880 3946 ClinVar
886089 3966 ClinVar
COSN31546215 2 COSMIC
COSN30167271 24 COSMIC
COSN30158221 28 COSMIC
COSN30451817 50 COSMIC
COSN31600294 99 COSMIC
COSN7298814 108 COSMIC
COSN31552770 110 COSMIC
COSN8485770 132 COSMIC
COSN30487481 145 COSMIC
COSN21806216 154 COSMIC
COSN7298815 423 COSMIC
COSN18010698 485 COSMIC
COSN15659931 1154 COSMIC
COSN17183033 1229 COSMIC
COSN24584605 1273 COSMIC
COSN22846823 1633 COSMIC
COSN5758591 1641 COSMIC
COSN22674737 1951 COSMIC
COSN15659944 2049 COSMIC
COSN23466652 2185 COSMIC
COSN2487511 2245 COSMIC
COSN24145549 2440 COSMIC
COSN20112674 2578 COSMIC
COSN513223 2578 COSMIC
COSN9091733 2599 COSMIC
COSN23633725 2849 COSMIC
COSN17581197 2970 COSMIC
COSN23075196 3072 COSMIC
COSN27326783 3282 COSMIC
COSN20112678 3954 COSMIC
COSN28973254 3955 COSMIC
rs4781563 3196 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747059736 4 dbSNP
rs755306366 6 dbSNP
rs927638101 8 dbSNP
rs781261543 9 dbSNP
rs9929524 12 dbSNP
rs770644250 13 dbSNP
rs990556541 14 dbSNP
rs1325554434 17 dbSNP
rs574181440 20 dbSNP
rs916059697 21 dbSNP
rs1459941128 23 dbSNP
rs369845118 26 dbSNP
rs745834636 27 dbSNP
rs1427796604 29 dbSNP
rs771976579 33 dbSNP
rs775040023 37 dbSNP
rs760175182 39 dbSNP
rs1043279800 40 dbSNP
rs200296085 44 dbSNP
rs3136226 45 dbSNP
rs761481929 49 dbSNP
rs1023224019 54 dbSNP
rs969929440 59 dbSNP
rs1190280397 62 dbSNP
rs1458824535 63 dbSNP
rs1414763419 65 dbSNP
rs1251335141 72 dbSNP
rs1423646185 73 dbSNP
rs981391136 78 dbSNP
rs934912008 81 dbSNP
rs1163110186 84 dbSNP
rs1053104762 91 dbSNP
rs901185320 95 dbSNP
rs117384292 96 dbSNP
rs1028435766 100 dbSNP
rs983200560 107 dbSNP
rs908599301 112 dbSNP
rs889622446 118 dbSNP
rs1379419796 122 dbSNP
rs1298777801 125 dbSNP
rs1005424288 126 dbSNP
rs1017181354 131 dbSNP
rs879120659 147 dbSNP
rs1379423488 148 dbSNP
rs886051667 151 dbSNP
rs900042638 154 dbSNP
rs973073961 158 dbSNP
rs543502035 159 dbSNP
rs998505217 163 dbSNP
rs1031773581 183 dbSNP
rs1176102350 184 dbSNP
rs960675575 186 dbSNP
rs556712304 189 dbSNP
rs536552167 193 dbSNP
rs892848411 194 dbSNP
rs1011749568 195 dbSNP
rs1349246002 197 dbSNP
rs542176025 199 dbSNP
rs1022798013 203 dbSNP
rs967780129 206 dbSNP
rs562343456 209 dbSNP
rs1318922355 214 dbSNP
rs978861686 215 dbSNP
rs879319131 219 dbSNP
rs527893953 223 dbSNP
rs543279126 224 dbSNP
rs1238330870 228 dbSNP
rs1483047581 231 dbSNP
rs1053810759 236 dbSNP
rs1421341742 241 dbSNP
rs1364010182 244 dbSNP
rs1158012709 247 dbSNP
rs541600279 249 dbSNP
rs1450668788 257 dbSNP
rs564658450 261 dbSNP
rs533310107 264 dbSNP
rs1257478048 265 dbSNP
rs550225655 266 dbSNP
rs1428366693 267 dbSNP
rs1261524345 269 dbSNP
rs908544305 282 dbSNP
rs1049833616 288 dbSNP
rs1427322939 290 dbSNP
rs1177597738 297 dbSNP
rs765296684 301 dbSNP
rs1354717997 303 dbSNP
rs1446757236 311 dbSNP
rs1311057184 318 dbSNP
rs147799208 319 dbSNP
rs750308239 323 dbSNP
rs1005656572 326 dbSNP
rs932851924 335 dbSNP
rs1051219906 336 dbSNP
rs912792455 341 dbSNP
rs1164968340 343 dbSNP
rs1474621617 345 dbSNP
rs934911758 348 dbSNP
rs1186512779 350 dbSNP
rs1038175781 354 dbSNP
rs1262808536 356 dbSNP
rs762905902 359 dbSNP
rs183465897 360 dbSNP
rs1279344948 362 dbSNP
rs1275334338 364 dbSNP
rs1214383818 371 dbSNP
rs1334343745 372 dbSNP
rs1291513424 379 dbSNP
rs1229440010 380 dbSNP
rs1326982106 383 dbSNP
rs886051668 385 dbSNP
rs1380357501 386 dbSNP
rs1208225671 411 dbSNP
rs141279442 412 dbSNP
rs1011323939 418 dbSNP
rs1465668562 420 dbSNP
rs1188307738 436 dbSNP
rs879715655 451 dbSNP
rs565592403 452 dbSNP
rs1455912752 454 dbSNP
rs1173834603 455 dbSNP
rs1192891466 456 dbSNP
rs905622720 457 dbSNP
rs1011832089 461 dbSNP
rs534595915 467 dbSNP
rs1023261207 471 dbSNP
rs1194427815 473 dbSNP
rs1468212662 474 dbSNP
rs1271292518 475 dbSNP
rs1002683799 476 dbSNP
rs3743538 485 dbSNP
rs979165477 486 dbSNP
rs1250742152 487 dbSNP
rs926129551 499 dbSNP
rs1173571388 504 dbSNP
rs956431002 509 dbSNP
rs760978837 510 dbSNP
rs371345833 514 dbSNP
rs545416742 518 dbSNP
rs746499083 520 dbSNP
rs1015590431 526 dbSNP
rs1167911290 534 dbSNP
rs1428383971 537 dbSNP
rs922882009 539 dbSNP
rs565318315 540 dbSNP
rs974174743 548 dbSNP
rs376791839 559 dbSNP
rs1275540706 564 dbSNP
rs911237028 565 dbSNP
rs921320773 567 dbSNP
rs1367043135 570 dbSNP
rs1217523863 577 dbSNP
rs1193937817 580 dbSNP
rs1249729575 580 dbSNP
rs941411144 584 dbSNP
rs1349979964 594 dbSNP
rs954148456 596 dbSNP
rs1233343527 601 dbSNP
rs986892319 610 dbSNP
rs1280987053 612 dbSNP
rs536781995 617 dbSNP
rs1334587922 620 dbSNP
rs1326293270 627 dbSNP
rs1408482875 631 dbSNP
rs912739476 650 dbSNP
rs934920913 663 dbSNP
rs796800600 674 dbSNP
rs1651204 675 dbSNP
rs1651203 676 dbSNP
rs994440819 679 dbSNP
rs116246143 680 dbSNP
rs896370003 686 dbSNP
rs1002630047 688 dbSNP
rs1486589012 689 dbSNP
rs1012138025 692 dbSNP
rs1258195530 697 dbSNP
rs750161593 701 dbSNP
rs146955145 702 dbSNP
rs868858464 705 dbSNP
rs1484605532 707 dbSNP
rs1286087483 717 dbSNP
rs886308993 719 dbSNP
rs1004782571 726 dbSNP
rs2276464 727 dbSNP
rs963341229 729 dbSNP
rs1294504883 732 dbSNP
rs1357896905 732 dbSNP
rs1246607341 741 dbSNP
rs541739848 746 dbSNP
rs956226620 748 dbSNP
rs1320710254 753 dbSNP
rs989352325 759 dbSNP
rs1029852839 761 dbSNP
rs1188937305 772 dbSNP
rs1413807398 773 dbSNP
rs1157005998 777 dbSNP
rs1476261282 800 dbSNP
rs561265785 809 dbSNP
rs2276465 811 dbSNP
rs985736999 812 dbSNP
rs986882511 824 dbSNP
rs1158171565 829 dbSNP
rs1216270229 830 dbSNP
rs1446029748 836 dbSNP
rs1281772309 839 dbSNP
rs1215008244 842 dbSNP
rs1334995764 845 dbSNP
rs911204355 848 dbSNP
rs1233148817 852 dbSNP
rs1377654940 858 dbSNP
rs886051669 860 dbSNP
rs1272249908 868 dbSNP
rs1431982059 869 dbSNP
rs886051670 876 dbSNP
rs1326060090 880 dbSNP
rs187039399 883 dbSNP
rs1463213633 885 dbSNP
rs757335570 887 dbSNP
rs191634336 892 dbSNP
rs914709662 898 dbSNP
rs1324177635 902 dbSNP
rs1349212819 906 dbSNP
rs1421614344 911 dbSNP
rs914784697 911 dbSNP
rs1245814737 915 dbSNP
rs1474996799 915 dbSNP
rs1434483482 916 dbSNP
rs1055443 931 dbSNP
rs947665957 932 dbSNP
rs112574290 933 dbSNP
rs376982978 942 dbSNP
rs117293226 948 dbSNP
rs1320414019 953 dbSNP
rs938406746 960 dbSNP
rs1339065244 963 dbSNP
rs1056679577 965 dbSNP
rs896337478 969 dbSNP
rs947961258 971 dbSNP
rs2276466 972 dbSNP
rs1434458086 982 dbSNP
rs903529257 995 dbSNP
rs1210789127 999 dbSNP
rs1409309044 1002 dbSNP
rs764425829 1004 dbSNP
rs1037560557 1005 dbSNP
rs1454417539 1010 dbSNP
rs182347151 1011 dbSNP
rs776927829 1014 dbSNP
rs1481366589 1016 dbSNP
rs1219628945 1023 dbSNP
rs1232957441 1024 dbSNP
rs368797729 1027 dbSNP
rs1253278331 1030 dbSNP
rs1483026663 1034 dbSNP
rs528398095 1035 dbSNP
rs551248118 1038 dbSNP
rs892171557 1039 dbSNP
rs1217547265 1045 dbSNP
rs545772856 1052 dbSNP
rs1298835494 1053 dbSNP
rs1441331101 1055 dbSNP
rs72781468 1057 dbSNP
rs1435156136 1062 dbSNP
rs549984925 1062 dbSNP
rs1008249195 1072 dbSNP
rs1173434771 1077 dbSNP
rs1029821510 1080 dbSNP
rs1420513327 1081 dbSNP
rs537224795 1091 dbSNP
rs1176154459 1092 dbSNP
rs985704466 1094 dbSNP
rs1018572231 1098 dbSNP
rs1412979474 1101 dbSNP
rs1403479204 1102 dbSNP
rs1213444534 1105 dbSNP
rs1486244228 1108 dbSNP
rs1309960912 1119 dbSNP
rs1255779693 1121 dbSNP
rs989345617 1125 dbSNP
rs879045709 1133 dbSNP
rs1021801672 1136 dbSNP
rs186586436 1142 dbSNP
rs567315876 1147 dbSNP
rs926925896 1148 dbSNP
rs1295117407 1152 dbSNP
rs1409250226 1157 dbSNP
rs1306459321 1158 dbSNP
rs1415327284 1170 dbSNP
rs974440151 1171 dbSNP
rs1342475183 1177 dbSNP
rs918614246 1179 dbSNP
rs938354550 1181 dbSNP
rs992520914 1182 dbSNP
rs1157701392 1188 dbSNP
rs1471355054 1190 dbSNP
rs1410399986 1195 dbSNP
rs1190618242 1198 dbSNP
rs536346195 1203 dbSNP
rs193289721 1208 dbSNP
rs1283902650 1209 dbSNP
rs1180511554 1212 dbSNP
rs1486955458 1214 dbSNP
rs1261584011 1215 dbSNP
rs572852406 1219 dbSNP
rs940456470 1220 dbSNP
rs1275141405 1221 dbSNP
rs1233769638 1225 dbSNP
rs1037906457 1231 dbSNP
rs1310269936 1236 dbSNP
rs1383754156 1242 dbSNP
rs1362203221 1248 dbSNP
rs532485638 1252 dbSNP
rs1455324154 1253 dbSNP
rs931897187 1255 dbSNP
rs373479879 1257 dbSNP
rs1368437817 1258 dbSNP
rs889772396 1273 dbSNP
rs1203790011 1274 dbSNP
rs1262692067 1278 dbSNP
rs947932244 1285 dbSNP
rs185626419 1287 dbSNP
rs535372156 1288 dbSNP
rs143188036 1289 dbSNP
rs375218385 1294 dbSNP
rs1188010592 1300 dbSNP
rs1355524246 1301 dbSNP
rs1263670792 1309 dbSNP
rs1236631765 1316 dbSNP
rs865894792 1325 dbSNP
rs1010353062 1331 dbSNP
rs1022205699 1334 dbSNP
rs34388983 1340 dbSNP
rs1307795434 1343 dbSNP
rs750161345 1347 dbSNP
rs1372767874 1348 dbSNP
rs1432384407 1348 dbSNP
rs1052500276 1352 dbSNP
rs77401662 1354 dbSNP
rs543949045 1356 dbSNP
rs1030123319 1363 dbSNP
rs960297884 1364 dbSNP
rs891291368 1365 dbSNP
rs1168384452 1381 dbSNP
rs1447854146 1382 dbSNP
rs992867132 1387 dbSNP
rs1333952512 1399 dbSNP
rs1339037471 1402 dbSNP
rs1480932792 1403 dbSNP
rs907545275 1403 dbSNP
rs1273606661 1406 dbSNP
rs962093903 1410 dbSNP
rs766219203 1411 dbSNP
rs548735957 1416 dbSNP
rs76447723 1422 dbSNP
rs1231888122 1429 dbSNP
rs920411905 1445 dbSNP
rs1328784678 1446 dbSNP
rs931846363 1447 dbSNP
rs1342065586 1449 dbSNP
rs1018456184 1450 dbSNP
rs1227028665 1451 dbSNP
rs1371757867 1452 dbSNP
rs1307783161 1463 dbSNP
rs886051671 1464 dbSNP
rs1377494623 1469 dbSNP
rs112742002 1473 dbSNP
rs944633114 1475 dbSNP
rs754423213 1479 dbSNP
rs1200637094 1488 dbSNP
rs951438141 1489 dbSNP
rs992200606 1493 dbSNP
rs1284260879 1494 dbSNP
rs542690728 1520 dbSNP
rs1459850023 1522 dbSNP
rs1486569392 1524 dbSNP
rs969455156 1530 dbSNP
rs1190257329 1532 dbSNP
rs1280790284 1534 dbSNP
rs1199476275 1535 dbSNP
rs1342474986 1535 dbSNP
rs980536090 1541 dbSNP
rs925161153 1551 dbSNP
rs1010716963 1553 dbSNP
rs190536009 1556 dbSNP
rs562184125 1558 dbSNP
rs1408539363 1561 dbSNP
rs1001681266 1581 dbSNP
rs1377590291 1593 dbSNP
rs1335304576 1599 dbSNP
rs747753243 1602 dbSNP
rs1400390777 1610 dbSNP
rs1160353083 1615 dbSNP
rs1457891083 1616 dbSNP
rs1448724691 1620 dbSNP
rs1179844178 1621 dbSNP
rs1191133831 1623 dbSNP
rs1034520988 1624 dbSNP
rs1052384979 1624 dbSNP
rs1476155164 1624 dbSNP
rs1186624941 1625 dbSNP
rs1379398372 1629 dbSNP
rs1466776661 1636 dbSNP
rs1205198006 1637 dbSNP
rs568549113 1638 dbSNP
rs1265709297 1639 dbSNP
rs1172256515 1642 dbSNP
rs372528374 1647 dbSNP
rs1357952668 1652 dbSNP
rs913553462 1655 dbSNP
rs1447828716 1656 dbSNP
rs1400310834 1658 dbSNP
rs570169244 1676 dbSNP
rs960247338 1677 dbSNP
rs1365115399 1679 dbSNP
rs537527346 1680 dbSNP
rs1292861065 1684 dbSNP
rs148155845 1685 dbSNP
rs1414506914 1688 dbSNP
rs1162418804 1690 dbSNP
rs888828138 1696 dbSNP
rs747649934 1700 dbSNP
rs1188733969 1701 dbSNP
rs755744665 1705 dbSNP
rs528435639 1709 dbSNP
rs746216891 1711 dbSNP
rs1215068756 1719 dbSNP
rs1337560900 1724 dbSNP
rs1228104401 1728 dbSNP
rs551285375 1735 dbSNP
rs1320968189 1736 dbSNP
rs1436029873 1747 dbSNP
rs898693372 1751 dbSNP
rs1364781849 1758 dbSNP
rs1318594724 1759 dbSNP
rs1443270141 1761 dbSNP
rs1350394211 1766 dbSNP
rs1322732009 1773 dbSNP
rs996142621 1774 dbSNP
rs772694607 1775 dbSNP
rs773340693 1776 dbSNP
rs1448473167 1785 dbSNP
rs951453816 1787 dbSNP
rs565142105 1797 dbSNP
rs1024935432 1798 dbSNP
rs1269340016 1801 dbSNP
rs537535365 1803 dbSNP
rs530629612 1804 dbSNP
rs1450418494 1805 dbSNP
rs1427463303 1809 dbSNP
rs1275514903 1810 dbSNP
rs969423914 1815 dbSNP
rs1341706465 1817 dbSNP
rs1473661264 1822 dbSNP
rs1295761423 1834 dbSNP
rs980848469 1837 dbSNP
rs1368318868 1838 dbSNP
rs1274356471 1841 dbSNP
rs1434156715 1845 dbSNP
rs925088241 1846 dbSNP
rs1160395583 1849 dbSNP
rs1308390319 1851 dbSNP
rs775803860 1859 dbSNP
rs550794794 1863 dbSNP
rs1175056070 1867 dbSNP
rs1433425211 1871 dbSNP
rs1452037786 1880 dbSNP
rs112776898 1881 dbSNP
rs913784636 1883 dbSNP
rs1188984165 1885 dbSNP
rs1477312295 1886 dbSNP
rs1254662077 1890 dbSNP
rs1206307126 1893 dbSNP
rs1392065093 1894 dbSNP
rs192910261 1895 dbSNP
rs886051672 1898 dbSNP
rs1051404461 1904 dbSNP
rs770921381 1905 dbSNP
rs1300638499 1906 dbSNP
rs34866586 1916 dbSNP
rs910231660 1916 dbSNP
rs1386915804 1932 dbSNP
rs943087482 1935 dbSNP
rs1288990197 1936 dbSNP
rs115472788 1937 dbSNP
rs1348333732 1952 dbSNP
rs1229798861 1958 dbSNP
rs898656985 1960 dbSNP
rs1466197456 1961 dbSNP
rs1358266315 1966 dbSNP
rs1173326380 1972 dbSNP
rs1402005852 1974 dbSNP
rs995724289 1976 dbSNP
rs1412071076 1979 dbSNP
rs1047686990 1982 dbSNP
rs1472562005 1990 dbSNP
rs567966619 1992 dbSNP
rs1328272776 1993 dbSNP
rs1013811547 2000 dbSNP
rs1213364112 2004 dbSNP
rs1267213183 2006 dbSNP
rs1024905585 2007 dbSNP
rs1208110891 2019 dbSNP
rs1475665686 2026 dbSNP
rs1488726530 2027 dbSNP
rs538608476 2028 dbSNP
rs1266798731 2039 dbSNP
rs1002239951 2049 dbSNP
rs1032459578 2051 dbSNP
rs958368914 2054 dbSNP
rs1327038785 2055 dbSNP
rs879353596 2057 dbSNP
rs1396447560 2059 dbSNP
rs1183213079 2065 dbSNP
rs1432474940 2070 dbSNP
rs1388659810 2072 dbSNP
rs558169438 2076 dbSNP
rs1457144872 2083 dbSNP
rs1417763746 2092 dbSNP
rs1167343277 2096 dbSNP
rs1369554410 2099 dbSNP
rs1021224828 2109 dbSNP
rs1424831585 2122 dbSNP
rs774315575 2124 dbSNP
rs954580819 2128 dbSNP
rs578166086 2136 dbSNP
rs140019040 2140 dbSNP
rs1302014795 2142 dbSNP
rs946038939 2146 dbSNP
rs910202253 2147 dbSNP
rs943056130 2153 dbSNP
rs904570481 2158 dbSNP
rs1001630286 2159 dbSNP
rs973553577 2160 dbSNP
rs1267217551 2174 dbSNP
rs9925509 2175 dbSNP
rs111651288 2180 dbSNP
rs886051673 2181 dbSNP
rs1365521487 2184 dbSNP
rs1319273168 2186 dbSNP
rs896027236 2187 dbSNP
rs1295734767 2191 dbSNP
rs1014902168 2203 dbSNP
rs1368212023 2217 dbSNP
rs1015206018 2222 dbSNP
rs898084878 2223 dbSNP
rs1391075117 2239 dbSNP
rs886051674 2241 dbSNP
rs886051675 2256 dbSNP
rs1314533034 2258 dbSNP
rs1322277631 2260 dbSNP
rs573881501 2272 dbSNP
rs1488134630 2274 dbSNP
rs1263423804 2286 dbSNP
rs949618422 2300 dbSNP
rs953124904 2301 dbSNP
rs1289463367 2309 dbSNP
rs1225734541 2316 dbSNP
rs1046667808 2331 dbSNP
rs1205941567 2334 dbSNP
rs1251448206 2336 dbSNP
rs1018713137 2337 dbSNP
rs1390699665 2342 dbSNP
rs1301656465 2357 dbSNP
rs1432085179 2358 dbSNP
rs542729521 2365 dbSNP
rs1183979194 2381 dbSNP
rs1002123790 2383 dbSNP
rs1168129491 2386 dbSNP
rs1447908880 2388 dbSNP
rs1379404798 2393 dbSNP
rs1199722439 2399 dbSNP
rs559394290 2403 dbSNP
rs1423778377 2410 dbSNP
rs1483223116 2411 dbSNP
rs1162270735 2412 dbSNP
rs572906300 2415 dbSNP
rs549968233 2416 dbSNP
rs913794243 2421 dbSNP
rs886051676 2424 dbSNP
rs768817193 2427 dbSNP
rs978725678 2433 dbSNP
rs1281854752 2434 dbSNP
rs1380770922 2435 dbSNP
rs1010077633 2438 dbSNP
rs1351429641 2439 dbSNP
rs1020772182 2440 dbSNP
rs565128975 2443 dbSNP
rs777015670 2446 dbSNP
rs530884886 2447 dbSNP
rs1376004371 2451 dbSNP
rs567813836 2454 dbSNP
rs1406055423 2456 dbSNP
rs1055912575 2461 dbSNP
rs895959283 2464 dbSNP
rs1179803294 2470 dbSNP
rs1443769782 2475 dbSNP
rs1312906274 2477 dbSNP
rs1256494272 2478 dbSNP
rs563490201 2478 dbSNP
rs1342183779 2485 dbSNP
rs1036957131 2487 dbSNP
rs184381372 2512 dbSNP
rs1330475087 2513 dbSNP
rs11075223 2514 dbSNP
rs553578280 2515 dbSNP
rs888805560 2516 dbSNP
rs1342478617 2520 dbSNP
rs1306005364 2525 dbSNP
rs1007249212 2526 dbSNP
rs1395685753 2534 dbSNP
rs115526695 2540 dbSNP
rs966203643 2543 dbSNP
rs1457678799 2556 dbSNP
rs1256779560 2560 dbSNP
rs1156584314 2563 dbSNP
rs987955073 2571 dbSNP
rs1021216566 2572 dbSNP
rs61422086 2572 dbSNP
rs979385159 2573 dbSNP
rs1249307425 2574 dbSNP
rs1208862364 2576 dbSNP
rs386789300 2576 dbSNP
rs929043647 2577 dbSNP
rs56012340 2578 dbSNP
rs76963262 2588 dbSNP
rs188840787 2589 dbSNP
rs1244285271 2593 dbSNP
rs949586896 2602 dbSNP
rs1380907883 2606 dbSNP
rs1322621287 2609 dbSNP
rs917318576 2611 dbSNP
rs1387815228 2613 dbSNP
rs950185514 2619 dbSNP
rs1407033481 2620 dbSNP
rs1036523164 2629 dbSNP
rs1162469666 2630 dbSNP
rs1442369229 2630 dbSNP
rs898027266 2634 dbSNP
rs1046554537 2639 dbSNP
rs373646296 2643 dbSNP
rs905412189 2643 dbSNP
rs1407679225 2644 dbSNP
rs532153427 2648 dbSNP
rs376328949 2650 dbSNP
rs938281447 2651 dbSNP
rs1290997464 2652 dbSNP
rs886051677 2660 dbSNP
rs1049326830 2663 dbSNP
rs558811254 2664 dbSNP
rs1300182730 2670 dbSNP
rs1229422618 2672 dbSNP
rs1053763659 2678 dbSNP
rs893827317 2688 dbSNP
rs889377022 2697 dbSNP
rs1359365427 2702 dbSNP
rs1009636631 2711 dbSNP
rs552190642 2713 dbSNP
rs890285257 2714 dbSNP
rs1422586921 2721 dbSNP
rs762639164 2722 dbSNP
rs1040445785 2726 dbSNP
rs1017453797 2728 dbSNP
rs964601794 2735 dbSNP
rs1334372931 2737 dbSNP
rs142073142 2738 dbSNP
rs1416725176 2742 dbSNP
rs12325236 2745 dbSNP
rs968312784 2749 dbSNP
rs751428407 2752 dbSNP
rs1033568623 2757 dbSNP
rs776910274 2760 dbSNP
rs916960459 2761 dbSNP
rs1220997459 2762 dbSNP
rs991449294 2770 dbSNP
rs545748696 2784 dbSNP
rs1323089941 2790 dbSNP
rs971120437 2811 dbSNP
rs146325817 2817 dbSNP
rs972581231 2818 dbSNP
rs1274105212 2821 dbSNP
rs1403039574 2827 dbSNP
rs1352049867 2829 dbSNP
rs1308444240 2830 dbSNP
rs1465766146 2831 dbSNP
rs919419887 2841 dbSNP
rs926806029 2842 dbSNP
rs930782043 2843 dbSNP
rs1414613021 2849 dbSNP
rs567543133 2850 dbSNP
rs1176269373 2861 dbSNP
rs910762951 2868 dbSNP
rs1254375672 2872 dbSNP
rs886051678 2873 dbSNP
rs1183410923 2878 dbSNP
rs181178937 2880 dbSNP
rs1054468381 2882 dbSNP
rs376334296 2893 dbSNP
rs1312787778 2900 dbSNP
rs1192422649 2901 dbSNP
rs1425438240 2916 dbSNP
rs1331193604 2923 dbSNP
rs573044100 2931 dbSNP
rs545171920 2942 dbSNP
rs1174023553 2947 dbSNP
rs1358028798 2951 dbSNP
rs1334165912 2952 dbSNP
rs1009302478 2964 dbSNP
rs1414905507 2972 dbSNP
rs1160361475 2983 dbSNP
rs558935375 2987 dbSNP
rs1418795890 3000 dbSNP
rs115605700 3006 dbSNP
rs890505691 3008 dbSNP
rs1009005586 3019 dbSNP
rs1483719736 3021 dbSNP
rs767067212 3022 dbSNP
rs900363390 3024 dbSNP
rs544513268 3026 dbSNP
rs1268770244 3027 dbSNP
rs4781562 3033 dbSNP
rs1028016698 3035 dbSNP
rs1314853680 3040 dbSNP
rs1314642674 3044 dbSNP
rs1438787885 3044 dbSNP
rs886051679 3045 dbSNP
rs1436724930 3050 dbSNP
rs1294125274 3058 dbSNP
rs796293601 3059 dbSNP
rs886051680 3072 dbSNP
rs959266739 3080 dbSNP
rs1290409660 3083 dbSNP
rs1330302894 3084 dbSNP
rs1223561796 3091 dbSNP
rs1167403584 3092 dbSNP
rs1424594297 3093 dbSNP
rs183916977 3094 dbSNP
rs1453763990 3099 dbSNP
rs1004464392 3100 dbSNP
rs1451340530 3101 dbSNP
rs1023941792 3118 dbSNP
rs115183774 3126 dbSNP
rs189232031 3131 dbSNP
rs1266964340 3137 dbSNP
rs1196889406 3140 dbSNP
rs1358275441 3144 dbSNP
rs180762894 3172 dbSNP
rs1413684734 3173 dbSNP
rs1294267877 3183 dbSNP
rs577306350 3185 dbSNP
rs959845041 3195 dbSNP
rs4781563 3196 dbSNP
rs8056393 3201 dbSNP
rs114059834 3204 dbSNP
rs1365349064 3205 dbSNP
rs1324313116 3207 dbSNP
rs1161844964 3228 dbSNP
rs1431890460 3233 dbSNP
rs1390826086 3234 dbSNP
rs1365076221 3238 dbSNP
rs1356506180 3241 dbSNP
rs1192619321 3256 dbSNP
rs1403155217 3260 dbSNP
rs910756200 3263 dbSNP
rs187182207 3268 dbSNP
rs943622809 3275 dbSNP
rs1191705375 3285 dbSNP
rs1041051774 3289 dbSNP
rs1289347624 3294 dbSNP
rs551258089 3300 dbSNP
rs1342481905 3304 dbSNP
rs911910903 3307 dbSNP
rs1310147838 3315 dbSNP
rs945008141 3319 dbSNP
rs567578149 3320 dbSNP
rs1278087677 3322 dbSNP
rs536535885 3323 dbSNP
rs535056033 3328 dbSNP
rs936415249 3332 dbSNP
rs1229352467 3333 dbSNP
rs1054961209 3335 dbSNP
rs1397549993 3344 dbSNP
rs900324607 3351 dbSNP
rs1358168690 3363 dbSNP
rs1460468006 3372 dbSNP
rs1013490553 3382 dbSNP
rs1025282863 3385 dbSNP
rs930435901 3388 dbSNP
rs1048888180 3392 dbSNP
rs897086597 3393 dbSNP
rs1483171487 3404 dbSNP
rs1437985199 3405 dbSNP
rs1249466677 3407 dbSNP
rs1193723954 3409 dbSNP
rs1180844142 3410 dbSNP
rs886330384 3414 dbSNP
rs1230919685 3416 dbSNP
rs543593100 3420 dbSNP
rs1224624063 3421 dbSNP
rs1473636474 3422 dbSNP
rs1281754531 3427 dbSNP
rs1230692724 3430 dbSNP
rs1163818090 3433 dbSNP
rs192113185 3440 dbSNP
rs1023910862 3444 dbSNP
rs1404391043 3446 dbSNP
rs952123125 3454 dbSNP
rs1469207901 3466 dbSNP
rs1170492660 3470 dbSNP
rs906901776 3475 dbSNP
rs539159846 3477 dbSNP
rs1472758826 3478 dbSNP
rs1363026211 3491 dbSNP
rs1179169629 3493 dbSNP
rs79560972 3494 dbSNP
rs1256209862 3497 dbSNP
rs1202544545 3498 dbSNP
rs1327307009 3499 dbSNP
rs964880009 3503 dbSNP
rs976289765 3506 dbSNP
rs1351785513 3511 dbSNP
rs1342677957 3519 dbSNP
rs1279367733 3523 dbSNP
rs1237115494 3533 dbSNP
rs1342538202 3535 dbSNP
rs113073720 3538 dbSNP
rs886051681 3543 dbSNP
rs1315039820 3553 dbSNP
rs1452096111 3553 dbSNP
rs34103244 3553 dbSNP
rs1404010429 3556 dbSNP
rs1322396463 3563 dbSNP
rs1381224154 3569 dbSNP
rs990016828 3571 dbSNP
rs1156639607 3573 dbSNP
rs1473564494 3575 dbSNP
rs1022481063 3584 dbSNP
rs1339690365 3585 dbSNP
rs544234052 3596 dbSNP
rs554914070 3597 dbSNP
rs34282104 3599 dbSNP
rs978370438 3600 dbSNP
rs1249368919 3605 dbSNP
rs1211080066 3612 dbSNP
rs911879861 3614 dbSNP
rs117678596 3621 dbSNP
rs974746865 3632 dbSNP
rs921969342 3646 dbSNP
rs1358733170 3659 dbSNP
rs1242457734 3675 dbSNP
rs930761666 3677 dbSNP
rs1049339988 3680 dbSNP
rs1380615592 3683 dbSNP
rs1054910304 3689 dbSNP
rs1431352950 3709 dbSNP
rs1325839871 3716 dbSNP
rs370469183 3717 dbSNP
rs1406808179 3720 dbSNP
rs1365972505 3728 dbSNP
rs560338292 3728 dbSNP
rs1461519318 3739 dbSNP
rs949215623 3744 dbSNP
rs1045664167 3745 dbSNP
rs1391447109 3751 dbSNP
rs1186646886 3752 dbSNP
rs886051682 3754 dbSNP
rs1476019779 3765 dbSNP
rs1242113543 3768 dbSNP
rs1166423474 3771 dbSNP
rs1046229768 3780 dbSNP
rs906869368 3782 dbSNP
rs994131655 3783 dbSNP
rs1357612937 3784 dbSNP
rs1026272145 3788 dbSNP
rs1215304918 3790 dbSNP
rs545911330 3791 dbSNP
rs1415471494 3800 dbSNP
rs113403633 3802 dbSNP
rs748796519 3806 dbSNP
rs1437846136 3808 dbSNP
rs1006251665 3809 dbSNP
rs1302350941 3811 dbSNP
rs181872627 3815 dbSNP
rs886051683 3819 dbSNP
rs1170528313 3830 dbSNP
rs1011340492 3834 dbSNP
rs1022874011 3837 dbSNP
rs1226038987 3838 dbSNP
rs1166615996 3840 dbSNP
rs966894065 3856 dbSNP
rs1199213060 3869 dbSNP
rs1030508532 3881 dbSNP
rs1234885551 3883 dbSNP
rs1205500527 3885 dbSNP
rs1437262289 3886 dbSNP
rs1271005164 3890 dbSNP
rs967358535 3905 dbSNP
rs978339326 3911 dbSNP
rs552082015 3912 dbSNP
rs112259692 3914 dbSNP
rs975124098 3916 dbSNP
rs1231439645 3921 dbSNP
rs773246781 3922 dbSNP
rs1298338918 3927 dbSNP
rs1441058124 3940 dbSNP
rs1335671640 3941 dbSNP
rs1471231999 3945 dbSNP
rs1430690116 3946 dbSNP
rs1469772571 3946 dbSNP
rs397778750 3946 dbSNP
rs1479625597 3953 dbSNP
rs1210559791 3955 dbSNP
rs531344901 3961 dbSNP
rs1428056110 3965 dbSNP
rs1177954651 3966 dbSNP
rs921967298 3969 dbSNP
rs990503546 3971 dbSNP
rs762808427 3978 dbSNP
rs1461709526 3991 dbSNP
rs530337169 3994 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 2072.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000311895.7 | 3UTR | AAUUCUCAAUUUUUGCACAUAUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000311895.7 | 3UTR | AAUUCUCAAUUUUUGCACAUAUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-873-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081178 MIDN midnolin 2 4
MIRT109809 ZFX zinc finger protein, X-linked 2 4
MIRT242383 TMC5 transmembrane channel like 5 2 4
MIRT444003 METRN meteorin, glial cell differentiation regulator 2 4
MIRT444097 SEPHS1 selenophosphate synthetase 1 2 2
MIRT446158 RPL12 ribosomal protein L12 2 2
MIRT446859 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT447275 FZD5 frizzled class receptor 5 2 2
MIRT447391 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT448817 FKBP1A FK506 binding protein 1A 2 4
MIRT450582 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT451776 USP36 ubiquitin specific peptidase 36 2 2
MIRT457961 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT458424 KLHL38 kelch like family member 38 2 4
MIRT461383 SLFN12L schlafen family member 12 like 2 2
MIRT467793 SLC2A14 solute carrier family 2 member 14 2 2
MIRT476517 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT480290 C7orf73 short transmembrane mitochondrial protein 1 2 4
MIRT482745 HES7 hes family bHLH transcription factor 7 2 10
MIRT483189 HIST1H2AH histone cluster 1 H2A family member h 2 6
MIRT486545 DCTN4 dynactin subunit 4 2 2
MIRT486581 ZNF619 zinc finger protein 619 2 2
MIRT492604 POLR3E RNA polymerase III subunit E 2 2
MIRT494130 DCAF7 DDB1 and CUL4 associated factor 7 2 6
MIRT496023 ZBED3 zinc finger BED-type containing 3 2 2
MIRT497121 NBEAL1 neurobeachin like 1 2 2
MIRT497400 TMEM245 transmembrane protein 245 2 2
MIRT501410 RANBP10 RAN binding protein 10 2 2
MIRT510947 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT512494 ARID2 AT-rich interaction domain 2 2 2
MIRT512595 ZNF783 zinc finger family member 783 2 2
MIRT512612 CNTN4 contactin 4 2 2
MIRT517808 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT520686 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT526179 HEPH hephaestin 2 2
MIRT532568 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT533979 TADA2A transcriptional adaptor 2A 2 2
MIRT538622 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539703 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539806 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT540422 FAM83F family with sequence similarity 83 member F 2 2
MIRT540506 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540619 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT542423 ZNF331 zinc finger protein 331 2 2
MIRT542454 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT543383 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT544777 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT544923 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 2
MIRT549768 ZNF611 zinc finger protein 611 2 4
MIRT551242 COLEC10 collectin subfamily member 10 2 2
MIRT560474 ENSA endosulfine alpha 2 2
MIRT569738 GPR173 G protein-coupled receptor 173 2 2
MIRT571297 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT572345 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT573112 ERBB2IP erbb2 interacting protein 2 2
MIRT607744 ANGPT4 angiopoietin 4 2 2
MIRT607903 SPRYD4 SPRY domain containing 4 2 2
MIRT611744 SERPING1 serpin family G member 1 2 4
MIRT615101 BNC2 basonuclin 2 2 2
MIRT619124 CD40LG CD40 ligand 2 2
MIRT625572 ANKRD42 ankyrin repeat domain 42 2 2
MIRT629038 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633986 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635675 COX18 COX18, cytochrome c oxidase assembly factor 2 4
MIRT637471 DEFB105B defensin beta 105B 2 4
MIRT637503 DEFB105A defensin beta 105A 2 4
MIRT639735 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640730 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT645364 C9orf47 chromosome 9 open reading frame 47 2 2
MIRT647938 RNF152 ring finger protein 152 2 2
MIRT649400 SH2D4A SH2 domain containing 4A 2 2
MIRT656860 KIN Kin17 DNA and RNA binding protein 2 2
MIRT663470 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT663507 NKAPL NFKB activating protein like 2 4
MIRT667690 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT677403 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT678682 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT678789 NUPL2 nucleoporin like 2 2 2
MIRT680649 KIAA1456 KIAA1456 2 2
MIRT682450 MTX3 metaxin 3 2 2
MIRT682740 CA6 carbonic anhydrase 6 2 2
MIRT684421 TUFT1 tuftelin 1 2 2
MIRT690535 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT690595 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690771 PLA2G2C phospholipase A2 group IIC 2 2
MIRT692233 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693667 MXRA7 matrix remodeling associated 7 2 2
MIRT695551 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695870 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT696214 LYZ lysozyme 2 2
MIRT698368 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT700795 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT701640 MYLK3 myosin light chain kinase 3 2 2
MIRT702989 HERPUD2 HERPUD family member 2 2 2
MIRT703627 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT703783 FAM102B family with sequence similarity 102 member B 2 2
MIRT704293 DDX19B DEAD-box helicase 19B 2 2
MIRT704828 CDC73 cell division cycle 73 2 2
MIRT705014 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT708480 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT710770 PHF7 PHD finger protein 7 2 2
MIRT718918 TRIM66 tripartite motif containing 66 2 2
MIRT720390 ZNF549 zinc finger protein 549 2 2
MIRT720593 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT723515 SIGLEC8 sialic acid binding Ig like lectin 8 2 2
MIRT724458 PRKX protein kinase, X-linked 2 2
MIRT737267 UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 3 0
MIRT737356 ZIC2 Zic family member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-873 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-873 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-873 Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-873 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-873-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-873-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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