miRTarBase - #MIRT545532


—
pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol ARF3   
Synonyms -
Description ADP ribosylation factor 3
Transcript NM_001659   
Expression
Putative miRNA Targets on ARF3
3'UTR of ARF3
(miRNA target sites are highlighted)		 
>ARF3|NM_001659|3'UTR
   1 AAGCCAGACAGCCCTAACAAAGCACCCCACCCACCCCTGACATACCTACTGTCACCCTGCCCCAGTCCTACCCCTTCCTC
  81 TCCATGCAAGTGTGGCCAGGGCCCTGGGTATCATGTCCACATGCCCAGCAAGAGCCTTGCCTCCCCTGCCTCCCCTCCTT
 161 TTTCCTGTCCACCTATATGACCAATCCCTAATTGCTGTCCTGATGATGAGTCATTCCAATTTACTGGATTTAAAACAAAA
 241 AGTTGTTACGGTTTCATGGGGTGGCCCCTCTCTCTCTCACCCTCTGGGTTTCGGGAGGTCGAGTGGGGTATTCTCTTTGT
 321 TTGGCAGTGGTTGCTGTCCTCTTGGCATCTGAGTCCTTTCCCTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCC
 401 TTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACA
 481 TGTATAGAGAGATATATTTGTGGGGGCCGGGGGGAGCGGGGAGGGGGTGGAGTGAAGCTCAGGGCTTGCAGCCAGGACAC
 561 TGCCCACTGGAGCCTGTCATCTGCCCCTTCCGTGTTGGTGAGATTAAGGGAAGAAGGTGGGAGGGCATTAGTCAAGCCGG
 641 ACTGCCCCAGTCTTTGACTGGTTACCCTCCTCTCTGCAGGTAGGTTTTTCTGGATGATAGGACAGATGATGGATTCTTCA
 721 CCACCATTTTCCTTGTACTCTTCTCTCCACCCTTCTTAGGGCTGGAGGATGGCATTTATCTCTAGATGACTGTTCCCAAG
 801 GAGATGCCACTCTGCTCTGCCTTACTGTTGGGAAGGAGAGAGGAACCCACTCACTCTTATCAGCTTAGAGTGTTCAACTG
 881 ATCCTTCCCCACCATCTTCAGATCTGTTCCTCTGGAGCTTGACTGGGGGGTGGGGATGGCAAGTCCATGGTGTGTGTTAG
 961 GGACCCAGGGCATTGGGGGAAGGGAGGCGAAGGCCTGAGGTTTTCCATCTTCATTCTCTTTTGTTATTAGGAGAAGGTGA
1041 GGCATGGGCCAATCCCATTCCTGCCTTCCAGTGCCCCACCACCCTTCTGATCTTAGGGGTTGGATGGGTCATCTGTCCTT
1121 GGTCAGAATTTTCTCACCCTAGTACTCCTACTGGCCTGACCAGGGCTGACTGGGTATTCTAATGAGGAGCTGGGAAGTGG
1201 GGTGACATAGCTGACCTTAGTATCAACCCCCCTCTTCTCCAACTCTTGTTTTCTAGTCCAGGATATGCTAAAGGACGAAG
1281 ATTTTCTATTGTTTCCAGGCCCTCAGACCATCCTTGCTGTCCCTTCACCCTCCATGCCCCTGCCATCCTCACTCACTTCT
1361 CATAAATGGATCTGGGGGTTAGAGTGGAGGAAATAAAATCCTGAAGTGGTTGTCAGTGCTTGTGGGATGCAGTGGTCTTC
1441 AGGATTCTCCCCGCATTATTATGTAGTTGTTCAGAAGCTGTTGCTACTGCGTCTCTCTGTCTGCAGGGGGCACTTGTTCC
1521 TGAGGTCCTCGCCTGGGTCCTGACTTCTGTAGTTTCTGTGAAGACGTGGCTGTCCTGTGGGCTCCTGTGTGTGCTGGCTG
1601 CGCCCTGAGCTCCGAGACAGCTGCCCATAACCTGCTAAGGTCAGGGCCCAGGGCCCCCCACAGCATGGCTGAGGGACCCC
1681 TTCCCAGTAGGGCTGTCCCAAGCCCCACTCCATGGGGCCAGGTTTCCTGGCCACTTTTGTTGATAGCAGATGGATCAATA
1761 TTAGTAACCCCATCCAAGATTGAACTGTGAAAGAGAGGTTCCAGGGGTATCTCCCTCAGTGCCAGTTACTTAGTGATGTG
1841 TTACCCAGGATGCAGCAGGTGTGTGCAGGTATCTTGCTCTCTAGGCCTGTGTGTGTGTGTGAGTGTGTGTGTATATGGGT
1921 GTGGGTGTGTTTGTGTGTGGTGGTTGTGGGGGGGGTGTTGGAGGTTCTATTTCATTTAAAAATGTATTCATTTCCCTGGC
2001 CCCACAGATGCTTCCCTCCATACTTTTTATTTGCTCTGTTTCCTCAGATTTATTTTGTCTTGCCCCATTGCCTCTCCTTC
2081 CTTGAACTCTTTCCTTTTCAATCTCAACTCATTCACTGCTGTTGCTCATTTGCCCTTTTCCATGTATTTTTTCCTACTTA
2161 GGATTTTCCACTCTATCTTTGTGGTTCATGAGGACTTTGCCTCTTCTCCTGCCTCATTCCCTGACTTTCTCTAGTTAGAT
2241 GTCAGTCCTAAATAGGTTTTCCTCACTTCAGGCCTCACCCCTCACCTTGTTTTTTTGGGGGCTCCAGGGACCAATCTGGG
2321 GCTGGAAATGTTAGGAGGTTGCCTTGGTGCTGCCCCAGATCTGTCCAGCAGGGGGCAGTAAGTGATCTTGGTAGTATCCC
2401 TGGCTGCTAAGCCCTTGGCAGGGGTGGTCCTTTCTACATTCCCATTCACTTAACAGCTCTTTTGGGATTGGGTGTTTCAT
2481 TCCATTTCTGCCCACTCCCTCTCCTCTCCTCTCTGGTAGGTTTAATTTTATGCTTTCCCTGATTCCAGCTTTCTGCTTCC
2561 TGAGGACTCCCGCTCCCCCCACCCCAAAGTTTGTCTGTGGTGTTATAGTGGTAACTGCAGTTCCTCCTCTGGAATGTAGA
2641 CTGTATATGTTTAATAACTCACCTTCTCTATCCTTGCTCAAAATGTGGGATAACGCGATGACTGTGACCCTGGTTGGAAA
2721 TTAAACTTGTTTTATGCAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuuaGUGUUUACAGGAAUUAUc 5'
              ||:|: || |||||:|| 
Target 5' gtgaCATAGCTGACCTTAGTAt 3'
 1202 - 1223 150.00 -11.90
2 
miRNA  3' cuUAGUGUUUA--CAGGAAUUAUc 5'
            :|:| | :|  ||||| |||| 
Target 5' taGTTAGATGTCAGTCCTAAATAg 3'
 2232 - 2255 130.00 -11.20
3 
miRNA  3' cuuaGU-GUUUACAGGAAUUAUc 5'
              || :||:|| :|||::|| 
Target 5' ggggCAGTAAGTGATCTTGGTAg 3'
 2372 - 2394 130.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19439908 8 COSMIC
COSN30143363 16 COSMIC
COSN14668018 29 COSMIC
COSN30518227 32 COSMIC
COSN30178480 39 COSMIC
COSN28821359 90 COSMIC
COSN32073552 98 COSMIC
COSN23294130 113 COSMIC
COSN31598029 120 COSMIC
COSN32072323 127 COSMIC
COSN31553148 128 COSMIC
COSN30706593 221 COSMIC
COSN26505486 250 COSMIC
COSN16131635 255 COSMIC
COSM2006376 267 COSMIC
COSM4774163 267 COSMIC
COSM5510593 304 COSMIC
COSM9834728 310 COSMIC
COSM8457374 313 COSMIC
COSM9815901 407 COSMIC
COSM8643063 416 COSMIC
COSM9281693 468 COSMIC
COSM4150124 508 COSMIC
COSM5953190 512 COSMIC
COSN18714689 835 COSMIC
COSN15668354 930 COSMIC
COSN1575379 1366 COSMIC
COSN21538433 1386 COSMIC
COSN9750976 1423 COSMIC
COSN22484176 1868 COSMIC
COSN17017346 1889 COSMIC
COSN32057287 1947 COSMIC
COSN20092564 2108 COSMIC
COSN24840355 2238 COSMIC
COSN26394826 2296 COSMIC
COSN16727205 2317 COSMIC
COSN22415239 2384 COSMIC
COSN31522425 2399 COSMIC
COSN26638361 2567 COSMIC
COSN31539481 2579 COSMIC
COSN16958469 2750 COSMIC
COSN29980585 2855 COSMIC
COSN27615281 2952 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775578185 3 dbSNP
rs1264447200 8 dbSNP
rs769901838 14 dbSNP
rs745926929 16 dbSNP
rs1306426879 18 dbSNP
rs71439481 18 dbSNP
rs71439480 22 dbSNP
rs1336274525 25 dbSNP
rs376753112 26 dbSNP
rs758330229 28 dbSNP
rs747902649 29 dbSNP
rs1206335729 30 dbSNP
rs778715183 31 dbSNP
rs753485533 33 dbSNP
rs1358932535 36 dbSNP
rs766095974 37 dbSNP
rs761954217 39 dbSNP
rs202241328 42 dbSNP
rs749939366 43 dbSNP
rs768204527 45 dbSNP
rs762313625 48 dbSNP
rs913422523 55 dbSNP
rs1276535820 68 dbSNP
rs1389482243 69 dbSNP
rs988874173 70 dbSNP
rs1388390021 77 dbSNP
rs1403782933 78 dbSNP
rs1220997264 80 dbSNP
rs1346378384 94 dbSNP
rs111525023 101 dbSNP
rs960421493 104 dbSNP
rs1238445629 107 dbSNP
rs995133561 124 dbSNP
rs528259121 125 dbSNP
rs1365088673 128 dbSNP
rs1228882055 132 dbSNP
rs963329455 143 dbSNP
rs1354749021 166 dbSNP
rs1208817343 170 dbSNP
rs1017247664 174 dbSNP
rs117828963 184 dbSNP
rs890166789 197 dbSNP
rs1001479031 205 dbSNP
rs1449998619 207 dbSNP
rs184263790 211 dbSNP
rs1202105945 213 dbSNP
rs774591320 219 dbSNP
rs1472362653 220 dbSNP
rs970056478 222 dbSNP
rs1283522147 233 dbSNP
rs374542183 237 dbSNP
rs1350776936 239 dbSNP
rs1051494494 242 dbSNP
rs1009349744 249 dbSNP
rs1318621648 249 dbSNP
rs891932830 250 dbSNP
rs1330488059 251 dbSNP
rs763196163 258 dbSNP
rs775739644 259 dbSNP
rs1053311656 261 dbSNP
rs1339031522 262 dbSNP
rs1244518422 265 dbSNP
rs113460070 267 dbSNP
rs1327485309 267 dbSNP
rs5798093 268 dbSNP
rs35034955 269 dbSNP
rs936208847 272 dbSNP
rs529247730 273 dbSNP
rs35886455 278 dbSNP
rs1206506754 279 dbSNP
rs148694584 279 dbSNP
rs1491013879 279 dbSNP
rs3209193 279 dbSNP
rs779661367 279 dbSNP
rs746017665 281 dbSNP
rs1049532207 282 dbSNP
rs1044660450 284 dbSNP
rs761155190 287 dbSNP
rs774787608 289 dbSNP
rs764531319 292 dbSNP
rs1419850474 293 dbSNP
rs992859340 298 dbSNP
rs763555701 300 dbSNP
rs1202035740 301 dbSNP
rs776628122 303 dbSNP
rs1260512698 308 dbSNP
rs1043304344 313 dbSNP
rs1447034214 315 dbSNP
rs1263177919 319 dbSNP
rs775856744 324 dbSNP
rs771921639 327 dbSNP
rs1263689371 328 dbSNP
rs1225062464 335 dbSNP
rs1287359667 336 dbSNP
rs1316922451 339 dbSNP
rs947632130 342 dbSNP
rs1253800361 344 dbSNP
rs1482885674 345 dbSNP
rs561267007 347 dbSNP
rs1334381247 354 dbSNP
rs1277762739 360 dbSNP
rs1259330150 361 dbSNP
rs913378897 362 dbSNP
rs4760666 364 dbSNP
rs1328473587 366 dbSNP
rs1250084216 370 dbSNP
rs1332257511 370 dbSNP
rs1162047677 380 dbSNP
rs1395590574 380 dbSNP
rs1407396346 382 dbSNP
rs1179226530 383 dbSNP
rs1376060197 386 dbSNP
rs1174870031 388 dbSNP
rs375118326 388 dbSNP
rs546110332 388 dbSNP
rs775316491 389 dbSNP
rs1423389444 392 dbSNP
rs1168892229 395 dbSNP
rs780515582 404 dbSNP
rs530894623 406 dbSNP
rs1373590651 408 dbSNP
rs1184700582 416 dbSNP
rs980196418 418 dbSNP
rs1460498300 422 dbSNP
rs1017532134 424 dbSNP
rs1007507207 437 dbSNP
rs1456419797 438 dbSNP
rs1257169194 440 dbSNP
rs1215001913 442 dbSNP
rs1341729721 446 dbSNP
rs1282647832 448 dbSNP
rs1244082504 452 dbSNP
rs1383640932 455 dbSNP
rs1195702361 456 dbSNP
rs1339217001 457 dbSNP
rs1445169878 458 dbSNP
rs1481079121 460 dbSNP
rs954349651 461 dbSNP
rs1803049 462 dbSNP
rs565346562 467 dbSNP
rs545194675 468 dbSNP
rs892221116 472 dbSNP
rs1397446334 474 dbSNP
rs1161123113 476 dbSNP
rs1443438064 478 dbSNP
rs1385280434 480 dbSNP
rs1053665295 482 dbSNP
rs1313181845 489 dbSNP
rs776267861 493 dbSNP
rs961610007 494 dbSNP
rs1437736973 495 dbSNP
rs1248513206 496 dbSNP
rs1441005748 498 dbSNP
rs904741520 498 dbSNP
rs1383225210 499 dbSNP
rs1232296943 501 dbSNP
rs1044611329 506 dbSNP
rs1439356320 507 dbSNP
rs768532168 508 dbSNP
rs749066792 509 dbSNP
rs1423453502 510 dbSNP
rs1360483446 512 dbSNP
rs779906862 513 dbSNP
rs1165062885 514 dbSNP
rs1444906654 515 dbSNP
rs771844861 515 dbSNP
rs1238131409 517 dbSNP
rs917220807 518 dbSNP
rs1280664328 519 dbSNP
rs1444759911 522 dbSNP
rs1348534549 524 dbSNP
rs1028072515 528 dbSNP
rs1162185232 529 dbSNP
rs1323358966 533 dbSNP
rs1423582318 543 dbSNP
rs1365875133 548 dbSNP
rs1164929064 550 dbSNP
rs770527371 553 dbSNP
rs1393289553 554 dbSNP
rs1417324276 557 dbSNP
rs1407085568 559 dbSNP
rs573344527 560 dbSNP
rs929348472 563 dbSNP
rs1244730781 564 dbSNP
rs919341936 565 dbSNP
rs1198480832 567 dbSNP
rs973934865 578 dbSNP
rs963223686 581 dbSNP
rs1294226694 588 dbSNP
rs192237496 590 dbSNP
rs1316440252 591 dbSNP
rs1285532976 592 dbSNP
rs1357357061 603 dbSNP
rs1225944128 610 dbSNP
rs1214598885 613 dbSNP
rs1366177166 614 dbSNP
rs1274617962 619 dbSNP
rs1406010085 621 dbSNP
rs1345674524 625 dbSNP
rs1275104594 626 dbSNP
rs749955857 633 dbSNP
rs1054376 638 dbSNP
rs954626868 639 dbSNP
rs1029961408 645 dbSNP
rs757726195 647 dbSNP
rs188443990 653 dbSNP
rs1404310349 656 dbSNP
rs764486313 660 dbSNP
rs1175435202 664 dbSNP
rs1480649766 665 dbSNP
rs1271260374 666 dbSNP
rs956609410 667 dbSNP
rs1485688326 671 dbSNP
rs1242754250 673 dbSNP
rs1032091152 676 dbSNP
rs1409062215 676 dbSNP
rs1218110385 684 dbSNP
rs938850986 694 dbSNP
rs763435073 696 dbSNP
rs1346881399 699 dbSNP
rs1001047939 702 dbSNP
rs904687251 703 dbSNP
rs1424849224 704 dbSNP
rs753056803 707 dbSNP
rs1355905347 709 dbSNP
rs142566771 712 dbSNP
rs2073480 718 dbSNP
rs1013099412 719 dbSNP
rs1223309521 723 dbSNP
rs948808478 726 dbSNP
rs1278795681 744 dbSNP
rs1386094272 748 dbSNP
rs1365375919 749 dbSNP
rs1319242485 752 dbSNP
rs1295109099 758 dbSNP
rs1436923782 762 dbSNP
rs1208689981 769 dbSNP
rs919915006 778 dbSNP
rs974492382 792 dbSNP
rs11547437 795 dbSNP
rs1189575262 796 dbSNP
rs1249169342 803 dbSNP
rs896074517 805 dbSNP
rs1158636097 811 dbSNP
rs537013104 815 dbSNP
rs929320075 821 dbSNP
rs1424373630 823 dbSNP
rs771455766 824 dbSNP
rs1416400405 825 dbSNP
rs986752821 830 dbSNP
rs746721856 835 dbSNP
rs942105212 846 dbSNP
rs910362273 848 dbSNP
rs1441834512 856 dbSNP
rs79463665 860 dbSNP
rs1457592214 862 dbSNP
rs933192210 867 dbSNP
rs923178421 868 dbSNP
rs988504131 871 dbSNP
rs996576552 871 dbSNP
rs1348966113 876 dbSNP
rs1213483826 877 dbSNP
rs1273015256 884 dbSNP
rs1237204518 885 dbSNP
rs967805740 888 dbSNP
rs1234066191 896 dbSNP
rs1458728766 897 dbSNP
rs1476775571 909 dbSNP
rs557788705 910 dbSNP
rs1251431589 912 dbSNP
rs866531597 925 dbSNP
rs778983385 926 dbSNP
rs1009631170 930 dbSNP
rs534430456 932 dbSNP
rs1409581211 947 dbSNP
rs542706020 947 dbSNP
rs1337568285 948 dbSNP
rs1303302052 952 dbSNP
rs969128899 955 dbSNP
rs1023049852 966 dbSNP
rs1013031120 970 dbSNP
rs896026946 973 dbSNP
rs1053772761 976 dbSNP
rs1375788926 978 dbSNP
rs1339165520 989 dbSNP
rs1195984010 992 dbSNP
rs1329598078 993 dbSNP
rs1212510813 996 dbSNP
rs1003087370 997 dbSNP
rs907342119 1001 dbSNP
rs1035926872 1007 dbSNP
rs1803046 1013 dbSNP
rs549248406 1018 dbSNP
rs1475635673 1019 dbSNP
rs12809692 1022 dbSNP
rs773910981 1023 dbSNP
rs948777340 1023 dbSNP
rs1460125486 1027 dbSNP
rs1302378791 1034 dbSNP
rs1038477044 1035 dbSNP
rs1038123852 1041 dbSNP
rs192719061 1046 dbSNP
rs187723701 1047 dbSNP
rs41291977 1051 dbSNP
rs1443691280 1054 dbSNP
rs1294101339 1055 dbSNP
rs1177358216 1063 dbSNP
rs1268807517 1068 dbSNP
rs1228634784 1069 dbSNP
rs549823697 1075 dbSNP
rs908573118 1080 dbSNP
rs1273242513 1081 dbSNP
rs1378796687 1090 dbSNP
rs1803047 1101 dbSNP
rs986679395 1105 dbSNP
rs1206696156 1107 dbSNP
rs1050536928 1115 dbSNP
rs955275136 1134 dbSNP
rs1195044588 1138 dbSNP
rs1366540997 1142 dbSNP
rs1474337036 1144 dbSNP
rs1180873218 1147 dbSNP
rs933139755 1148 dbSNP
rs1463087158 1160 dbSNP
rs1458842508 1165 dbSNP
rs923123911 1170 dbSNP
rs1287576511 1176 dbSNP
rs530907953 1181 dbSNP
rs1383341712 1184 dbSNP
rs921072551 1193 dbSNP
rs1199442826 1207 dbSNP
rs565143390 1222 dbSNP
rs1413732799 1224 dbSNP
rs1293559916 1227 dbSNP
rs975233256 1231 dbSNP
rs12828681 1232 dbSNP
rs1259690431 1233 dbSNP
rs1351306302 1237 dbSNP
rs1206877395 1238 dbSNP
rs551841915 1242 dbSNP
rs988064265 1243 dbSNP
rs535998687 1245 dbSNP
rs1485241312 1246 dbSNP
rs1187410947 1252 dbSNP
rs1258505838 1253 dbSNP
rs1476344808 1256 dbSNP
rs1157012674 1270 dbSNP
rs924950264 1274 dbSNP
rs568583032 1276 dbSNP
rs182465130 1277 dbSNP
rs1373981668 1282 dbSNP
rs771825766 1287 dbSNP
rs151244523 1288 dbSNP
rs916328238 1294 dbSNP
rs1389383609 1297 dbSNP
rs191034818 1302 dbSNP
rs956540753 1308 dbSNP
rs1335856865 1312 dbSNP
rs368247315 1313 dbSNP
rs1241049310 1323 dbSNP
rs1278107466 1327 dbSNP
rs1003056015 1336 dbSNP
rs1336649500 1338 dbSNP
rs1803044 1339 dbSNP
rs1036280541 1344 dbSNP
rs1394382393 1350 dbSNP
rs577526977 1352 dbSNP
rs1484344136 1353 dbSNP
rs993739497 1358 dbSNP
rs1404366530 1360 dbSNP
rs1249840441 1361 dbSNP
rs962608302 1362 dbSNP
rs1180977734 1369 dbSNP
rs764301533 1375 dbSNP
rs1434704045 1384 dbSNP
rs1174651358 1390 dbSNP
rs1006220892 1391 dbSNP
rs1460108501 1409 dbSNP
rs1297284505 1412 dbSNP
rs1396511835 1419 dbSNP
rs1013019673 1422 dbSNP
rs778867096 1423 dbSNP
rs1050484139 1431 dbSNP
rs557509303 1432 dbSNP
rs997631531 1436 dbSNP
rs762927731 1443 dbSNP
rs753260400 1452 dbSNP
rs765663650 1453 dbSNP
rs1305569280 1462 dbSNP
rs1052718107 1465 dbSNP
rs935224248 1480 dbSNP
rs1250972130 1484 dbSNP
rs940124663 1488 dbSNP
rs925199106 1489 dbSNP
rs11547436 1490 dbSNP
rs947705701 1491 dbSNP
rs1194859232 1493 dbSNP
rs934010914 1497 dbSNP
rs753380337 1499 dbSNP
rs1427115946 1501 dbSNP
rs1169241946 1508 dbSNP
rs1373274079 1511 dbSNP
rs921165693 1513 dbSNP
rs975369249 1515 dbSNP
rs571333470 1519 dbSNP
rs1441491733 1521 dbSNP
rs1327885446 1525 dbSNP
rs1359529369 1527 dbSNP
rs991840265 1528 dbSNP
rs776928866 1530 dbSNP
rs771259044 1531 dbSNP
rs928779540 1543 dbSNP
rs1271327363 1544 dbSNP
rs972648145 1547 dbSNP
rs962267997 1548 dbSNP
rs760419314 1549 dbSNP
rs1016928523 1552 dbSNP
rs1006504338 1558 dbSNP
rs1186287076 1560 dbSNP
rs1351061352 1565 dbSNP
rs953348302 1566 dbSNP
rs1162372688 1571 dbSNP
rs1029013295 1577 dbSNP
rs997579201 1587 dbSNP
rs981729133 1591 dbSNP
rs1343354326 1593 dbSNP
rs555587954 1597 dbSNP
rs772738533 1601 dbSNP
rs1363874187 1609 dbSNP
rs1052241398 1613 dbSNP
rs1334174896 1614 dbSNP
rs1342459624 1615 dbSNP
rs1233960923 1624 dbSNP
rs1294023806 1625 dbSNP
rs969050247 1627 dbSNP
rs11547435 1630 dbSNP
rs35188035 1633 dbSNP
rs1023170713 1647 dbSNP
rs1399471492 1647 dbSNP
rs1339166869 1648 dbSNP
rs1013200112 1651 dbSNP
rs1300523662 1654 dbSNP
rs11168796 1661 dbSNP
rs1183094088 1662 dbSNP
rs1017104381 1664 dbSNP
rs1400020045 1669 dbSNP
rs1162307573 1679 dbSNP
rs1456112539 1686 dbSNP
rs1369809179 1688 dbSNP
rs1188132478 1693 dbSNP
rs1004679844 1696 dbSNP
rs903708420 1699 dbSNP
rs1312111957 1715 dbSNP
rs550004870 1716 dbSNP
rs887188392 1717 dbSNP
rs1477203733 1718 dbSNP
rs1043610980 1719 dbSNP
rs539390475 1724 dbSNP
rs1260958938 1732 dbSNP
rs1371301431 1734 dbSNP
rs879722922 1735 dbSNP
rs149163510 1737 dbSNP
rs916223401 1738 dbSNP
rs1356233247 1744 dbSNP
rs1056057394 1750 dbSNP
rs1280155174 1752 dbSNP
rs1485777994 1760 dbSNP
rs1189251213 1770 dbSNP
rs1230628477 1775 dbSNP
rs777343750 1780 dbSNP
rs939079035 1782 dbSNP
rs918321932 1787 dbSNP
rs972551161 1793 dbSNP
rs1382080618 1795 dbSNP
rs899871047 1798 dbSNP
rs747555985 1805 dbSNP
rs779001437 1807 dbSNP
rs1415204371 1808 dbSNP
rs1358816817 1810 dbSNP
rs551510759 1811 dbSNP
rs1274024463 1815 dbSNP
rs1218105285 1816 dbSNP
rs1441586365 1818 dbSNP
rs915036523 1838 dbSNP
rs988005959 1846 dbSNP
rs935189409 1852 dbSNP
rs1349076999 1853 dbSNP
rs546660336 1854 dbSNP
rs1331010778 1858 dbSNP
rs1270462967 1862 dbSNP
rs953629750 1870 dbSNP
rs1028960626 1879 dbSNP
rs559386605 1892 dbSNP
rs1239505889 1893 dbSNP
rs550957705 1901 dbSNP
rs1023262896 1902 dbSNP
rs549087199 1902 dbSNP
rs750021723 1902 dbSNP
rs777280303 1902 dbSNP
rs992109898 1902 dbSNP
rs749118792 1903 dbSNP
rs1174482210 1904 dbSNP
rs529398656 1904 dbSNP
rs976498019 1905 dbSNP
rs1459410670 1912 dbSNP
rs1409677756 1913 dbSNP
rs868281912 1918 dbSNP
rs79908244 1919 dbSNP
rs1439283863 1920 dbSNP
rs75984804 1920 dbSNP
rs867906745 1924 dbSNP
rs76640300 1925 dbSNP
rs79768729 1926 dbSNP
rs1331974719 1927 dbSNP
rs1396301187 1931 dbSNP
rs78588974 1932 dbSNP
rs1268856892 1937 dbSNP
rs1259373435 1940 dbSNP
rs1338305692 1940 dbSNP
rs963009121 1940 dbSNP
rs999645045 1941 dbSNP
rs780043669 1942 dbSNP
rs76251264 1945 dbSNP
rs903654807 1946 dbSNP
rs1253566788 1947 dbSNP
rs1453318758 1948 dbSNP
rs528578500 1948 dbSNP
rs1004368475 1950 dbSNP
rs75520473 1952 dbSNP
rs187995169 1953 dbSNP
rs1459946401 1954 dbSNP
rs1029746364 1956 dbSNP
rs1164374101 1956 dbSNP
rs148209110 1956 dbSNP
rs1326229553 1969 dbSNP
rs1012077648 1978 dbSNP
rs1400185604 1983 dbSNP
rs899794848 1989 dbSNP
rs1331948969 1995 dbSNP
rs895072938 1999 dbSNP
rs1056339662 2000 dbSNP
rs939010379 2002 dbSNP
rs147693959 2004 dbSNP
rs1358344744 2011 dbSNP
rs1203372120 2014 dbSNP
rs1283238459 2015 dbSNP
rs1447398392 2016 dbSNP
rs1376992703 2023 dbSNP
rs1194573800 2029 dbSNP
rs1474387087 2033 dbSNP
rs893710006 2033 dbSNP
rs1187272369 2035 dbSNP
rs1369174360 2062 dbSNP
rs41291975 2071 dbSNP
rs578221731 2077 dbSNP
rs1052804795 2091 dbSNP
rs1453056405 2093 dbSNP
rs935175419 2094 dbSNP
rs1384613374 2098 dbSNP
rs1420705054 2101 dbSNP
rs1253870677 2105 dbSNP
rs1198202053 2107 dbSNP
rs927834248 2109 dbSNP
rs1413834649 2112 dbSNP
rs1312783409 2121 dbSNP
rs1260131295 2127 dbSNP
rs981789898 2137 dbSNP
rs1260079372 2140 dbSNP
rs947806869 2153 dbSNP
rs1037177582 2154 dbSNP
rs1218512447 2155 dbSNP
rs941134044 2169 dbSNP
rs1277972549 2173 dbSNP
rs909358385 2175 dbSNP
rs1273569492 2176 dbSNP
rs1256900311 2177 dbSNP
rs1425635318 2181 dbSNP
rs757995795 2192 dbSNP
rs1180208046 2194 dbSNP
rs1363709944 2195 dbSNP
rs376098319 2201 dbSNP
rs1440923771 2209 dbSNP
rs984960765 2216 dbSNP
rs932188711 2219 dbSNP
rs182969770 2220 dbSNP
rs916223271 2222 dbSNP
rs922171435 2225 dbSNP
rs1303100221 2231 dbSNP
rs145190582 2237 dbSNP
rs1389191076 2248 dbSNP
rs1305745141 2249 dbSNP
rs963400442 2250 dbSNP
rs1242291085 2251 dbSNP
rs910134570 2255 dbSNP
rs1346920158 2269 dbSNP
rs1232721705 2289 dbSNP
rs983476334 2295 dbSNP
rs541065503 2296 dbSNP
rs1029839621 2297 dbSNP
rs1397631799 2299 dbSNP
rs1803050 2300 dbSNP
rs1330380891 2306 dbSNP
rs1393617489 2311 dbSNP
rs1432975362 2314 dbSNP
rs1176262819 2316 dbSNP
rs998247289 2319 dbSNP
rs1192709533 2333 dbSNP
rs964139642 2334 dbSNP
rs1297083386 2335 dbSNP
rs1410024417 2348 dbSNP
rs1018805378 2349 dbSNP
rs1323808781 2353 dbSNP
rs76068497 2358 dbSNP
rs1387118939 2363 dbSNP
rs1010887884 2372 dbSNP
rs978557705 2374 dbSNP
rs1225589370 2375 dbSNP
rs78440727 2376 dbSNP
rs999403985 2382 dbSNP
rs1022049166 2389 dbSNP
rs1201001838 2393 dbSNP
rs752352403 2395 dbSNP
rs1046231981 2396 dbSNP
rs1251700041 2396 dbSNP
rs1012025277 2397 dbSNP
rs1192136964 2402 dbSNP
rs1269975295 2410 dbSNP
rs895020383 2411 dbSNP
rs947776193 2414 dbSNP
rs11547438 2422 dbSNP
rs1170671919 2424 dbSNP
rs1034883787 2425 dbSNP
rs1466741289 2426 dbSNP
rs1162237088 2433 dbSNP
rs1003493791 2434 dbSNP
rs896787358 2438 dbSNP
rs747313793 2447 dbSNP
rs941699710 2450 dbSNP
rs907542498 2456 dbSNP
rs1438110000 2468 dbSNP
rs983015316 2471 dbSNP
rs1803045 2478 dbSNP
rs1341148731 2488 dbSNP
rs777797984 2495 dbSNP
rs888206840 2497 dbSNP
rs1478281606 2501 dbSNP
rs1049540509 2504 dbSNP
rs758507902 2508 dbSNP
rs535549770 2509 dbSNP
rs1267564141 2515 dbSNP
rs1205385907 2522 dbSNP
rs1485099317 2524 dbSNP
rs3209224 2526 dbSNP
rs1192404709 2537 dbSNP
rs1064060 2553 dbSNP
rs1263432757 2561 dbSNP
rs1441859263 2567 dbSNP
rs1277127398 2571 dbSNP
rs922738622 2572 dbSNP
rs41291973 2579 dbSNP
rs556129454 2580 dbSNP
rs866949985 2584 dbSNP
rs1309036100 2599 dbSNP
rs186845876 2606 dbSNP
rs570686715 2608 dbSNP
rs1291461020 2609 dbSNP
rs1378572844 2622 dbSNP
rs923897627 2634 dbSNP
rs1280865908 2645 dbSNP
rs567709511 2654 dbSNP
rs755524018 2658 dbSNP
rs1054760 2661 dbSNP
rs754308513 2662 dbSNP
rs978123889 2670 dbSNP
rs1216334437 2685 dbSNP
rs1287234704 2694 dbSNP
rs1489052470 2696 dbSNP
rs1018356803 2703 dbSNP
rs1191738156 2706 dbSNP
rs1011442225 2712 dbSNP
rs1472845756 2723 dbSNP
rs968053611 2749 dbSNP
rs1358030083 2750 dbSNP
rs958030231 2753 dbSNP
rs1439084276 2754 dbSNP
rs1158995750 2763 dbSNP
rs1362242116 2764 dbSNP
rs915321914 2769 dbSNP
rs57728708 2776 dbSNP
rs906471337 2779 dbSNP
rs1304725519 2786 dbSNP
rs1371767457 2791 dbSNP
rs959187833 2794 dbSNP
rs766801285 2800 dbSNP
rs1410457972 2802 dbSNP
rs1003849060 2807 dbSNP
rs1231546386 2808 dbSNP
rs79523799 2823 dbSNP
rs1442702278 2827 dbSNP
rs565739096 2829 dbSNP
rs1457247617 2831 dbSNP
rs895007118 2831 dbSNP
rs1179211135 2837 dbSNP
rs1381862259 2844 dbSNP
rs549024098 2844 dbSNP
rs1171843631 2866 dbSNP
rs1005215365 2872 dbSNP
rs1235762952 2878 dbSNP
rs1398226361 2893 dbSNP
rs1446651891 2899 dbSNP
rs888152865 2900 dbSNP
rs760938323 2901 dbSNP
rs907512514 2917 dbSNP
rs996610870 2919 dbSNP
rs1379509028 2927 dbSNP
rs1047442409 2929 dbSNP
rs1274701103 2931 dbSNP
rs1190132813 2935 dbSNP
rs1220646145 2936 dbSNP
rs529388441 2941 dbSNP
rs772934453 2942 dbSNP
rs944918233 2943 dbSNP
rs1285908351 2944 dbSNP
rs1214919819 2946 dbSNP
rs554660580 2947 dbSNP
rs1247116438 2952 dbSNP
rs924207769 2954 dbSNP
rs1174569805 2958 dbSNP
rs1421493187 2959 dbSNP
rs570229727 2978 dbSNP
rs946698122 2989 dbSNP
rs867419243 2997 dbSNP
rs1377960197 3003 dbSNP
rs1403080263 3005 dbSNP
rs1323285826 3009 dbSNP
rs1332067360 3011 dbSNP
rs915273979 3014 dbSNP
rs942837393 3015 dbSNP
rs1339504773 3021 dbSNP
rs2272311 3035 dbSNP
rs1259471891 3036 dbSNP
rs368942583 3039 dbSNP
rs529053797 3044 dbSNP
rs959467608 3045 dbSNP
rs1209187016 3046 dbSNP
rs927749407 3062 dbSNP
rs1453121583 3072 dbSNP
rs1201205239 3086 dbSNP
rs981975598 3093 dbSNP
rs1297444409 3104 dbSNP
rs1425934909 3108 dbSNP
rs1472069412 3109 dbSNP
rs961540254 3112 dbSNP
rs989538059 3114 dbSNP
rs1346706872 3118 dbSNP
rs114075287 3121 dbSNP
rs1030971620 3127 dbSNP
rs768260071 3128 dbSNP
rs1411886279 3130 dbSNP
rs1359460819 3141 dbSNP
rs1400275879 3142 dbSNP
rs1279482442 3146 dbSNP
rs1338222013 3147 dbSNP
rs1243891985 3153 dbSNP
rs978048928 3158 dbSNP
rs181097040 3167 dbSNP
rs1385876983 3172 dbSNP
rs149739386 3172 dbSNP
rs952327989 3183 dbSNP
rs541770322 3191 dbSNP
rs1488073955 3194 dbSNP
rs17123398 3203 dbSNP
rs894942328 3209 dbSNP
rs767023008 3214 dbSNP
rs79744699 3221 dbSNP
rs769644200 3222 dbSNP
rs1221267958 3223 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 377.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000256682.4 | 3UTR | UAAUAACUCACCUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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