miRTarBase - #MIRT546998


—
pre-miRNA Information
pre-miRNA hsa-mir-3675   
Genomic Coordinates chr1: 16858949 - 16859021
Description Homo sapiens miR-3675 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3675-5p
Sequence 12| UAUGGGGCUUCUGUAGAGAUUUC |34
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1229940041 1 dbSNP
rs1184422098 2 dbSNP
rs768029583 3 dbSNP
rs202014433 6 dbSNP
rs774834919 7 dbSNP
rs1484376029 8 dbSNP
rs771338088 8 dbSNP
rs749521347 10 dbSNP
rs773421450 12 dbSNP
rs1250672393 14 dbSNP
rs769780471 15 dbSNP
rs781028022 16 dbSNP
rs1315377622 17 dbSNP
rs754885466 18 dbSNP
rs746860289 20 dbSNP
rs1330333643 23 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PPP2CA   
Synonyms PP2Ac, PP2CA, PP2Calpha, RP-C
Description protein phosphatase 2 catalytic subunit alpha
Transcript NM_002715   
Expression
Putative miRNA Targets on PPP2CA
3'UTR of PPP2CA
(miRNA target sites are highlighted)		 
>PPP2CA|NM_002715|3'UTR
   1 TGAAATTTTAAACTTGTACAGTATTGCCATGAACCATATATCGACCTAATGGAAATGGGAAGAGCAACAGTAACTCCAAA
  81 GTGTCAGAAAATAGTTAACATTCAAAAAACTTGTTTTCACATGGACCAAAAGATGTGCCATATAAAAATACAAAGCCTCT
 161 TGTCATCAACAGCCGTGACCACTTTAGAATGAACCAGTTCATTGCATGCTGAAGCGACATTGTTGGTCAAGAAACCAGTT
 241 TCTGGCATAGCGCTATTTGTAGTTACTTTTGCTTTCTCTGAGAGACTGCAGATAATAAGATGTAAACATTAACACCTCGT
 321 GAATACAATTTAACTTCCATTTAGCTATAGCTTTACTCAGCATGACTGTAGATAAGGATAGCAGCAAACAATCATTGGAG
 401 CTTAATGAACATTTTTAAAAATAATTACCAAGGCCTCCCTTCTACTTGTGAGTTTTGAAATTGTTCTTTTTATTTTCAGG
 481 GATACCGTTTAATTTAATTATATGATTTGTCTGCACTCAGTTTATTCCCTACTCAAATCTCAGCCCCATGTTGTTCTTTG
 561 TTATTGTCAGAACCTGGTGAGTTGTTTTGAACAGAACTGTTTTTTCCCCTTCCTGTAAGACGATGTGACTGCACAAGAGC
 641 ACTGCAGTGTTTTTCATAATAAACTTGTGAACTAAGAACTGAGAAGGTCAAATTTTAATTGTATCAATGGGCAAGACTGG
 721 TGCTGTTTATTAAAAAAGTTAAATCAATTGAGTAAATTTTAGAATTTGTAGACTTGTAGGTAAAATAAAAATCAAGGGCA
 801 CTACATAACCTCTCTGGTAACTCCTTGACATTCTTCAGATTAACTTCAGGATTTATTTGTATTTCACATATTACAATTTG
 881 TCACATTGTTGGTGTGCACTTTGTGGGTTCTTCCTGCATATTAACTTGTTTGTAAGAAAGGAAATCTGTGCTGCTTCAGT
 961 AAGACTTAATTGTAAAACCATATAACTTGAGATTTAAGTCTTTGGGTTTTGTTTTAATAAAACAGCATGTTTTCAGGTAG
1041 AGCTTAAACTAAATGATGTGTTTACTTAGTGCAGTTTCTGGTTATGAATATTATATTGCTATGTGTATATTATATGGACT
1121 CTTTAAAATGATTGACAGATTGGCAAATTCTTAAATCTTTGTACATTGTTGAGTCATATGTTCTTAGAGTTAAATTTGTC
1201 TCAGATAAGAAAGTGTTAAAGCATTAGCCTGTGTCAAGTTCTTTGAGTGATACTAGTGAAACCAAATAGAAAACTATTGT
1281 TGGATCATGATTTAGTCTTATGTACATTCACCCGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUUAGAGAU--GUCU----UCGGGGUAu 5'
            | || |||  || |    |||||||| 
Target 5' ttATTCCCTACTCAAATCTCAGCCCCATg 3'
 522 - 550 157.00 -18.90
2 
miRNA  3' cuUUAGAGA-UGUCUUCGGGGUAu 5'
            |:|:||| :||  ||| |:|| 
Target 5' ccAGTTTCTGGCA-TAGCGCTATt 3'
 235 - 257 116.00 -12.70
3 
miRNA  3' cuuuagagAUGUCUUCGGGGUAu 5'
                  |||| |||||:| | 
Target 5' tataaaaaTACA-AAGCCTCTTg 3'
 141 - 162 114.00 -10.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30463559 35 COSMIC
COSN14139836 42 COSMIC
COSN30101033 57 COSMIC
COSN31480808 85 COSMIC
COSN32077776 159 COSMIC
COSN31588604 172 COSMIC
COSN20091247 251 COSMIC
COSN31606531 276 COSMIC
COSN25272194 325 COSMIC
COSN25395288 332 COSMIC
COSN25272193 422 COSMIC
COSN25267204 503 COSMIC
COSN31530783 638 COSMIC
COSN28825095 649 COSMIC
COSN30174069 750 COSMIC
COSN31569000 766 COSMIC
COSN31568729 833 COSMIC
COSN28753018 867 COSMIC
COSN31486668 946 COSMIC
COSN28202153 963 COSMIC
COSN25512084 1130 COSMIC
COSN16453515 1179 COSMIC
COSN8203436 1385 COSMIC
COSN6510393 1629 COSMIC
COSN32064975 1643 COSMIC
COSN19522606 1888 COSMIC
COSN28201521 1896 COSMIC
COSN6863835 1896 COSMIC
COSN9926126 2288 COSMIC
COSN9926125 2368 COSMIC
COSN16373238 2636 COSMIC
COSN7875522 2996 COSMIC
COSN16820399 3003 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs377522263 5 dbSNP
rs761339885 7 dbSNP
rs910664366 10 dbSNP
rs750174909 13 dbSNP
rs564693535 16 dbSNP
rs1165483217 17 dbSNP
rs767359243 21 dbSNP
rs761802710 22 dbSNP
rs1190014220 28 dbSNP
rs774348827 29 dbSNP
rs369077426 34 dbSNP
rs763199086 36 dbSNP
rs1245059117 37 dbSNP
rs759330204 42 dbSNP
rs769956657 43 dbSNP
rs1160712440 46 dbSNP
rs746249069 51 dbSNP
rs1350972549 55 dbSNP
rs935835795 58 dbSNP
rs1165129899 61 dbSNP
rs148509164 67 dbSNP
rs1027625234 68 dbSNP
rs1396411813 69 dbSNP
rs925735162 78 dbSNP
rs1292887274 83 dbSNP
rs186644353 90 dbSNP
rs900565647 97 dbSNP
rs1374028580 99 dbSNP
rs1393032128 100 dbSNP
rs74863466 104 dbSNP
rs1290363839 112 dbSNP
rs1327146889 113 dbSNP
rs1423096456 121 dbSNP
rs1274001478 122 dbSNP
rs1337433289 124 dbSNP
rs1219890746 126 dbSNP
rs977343862 136 dbSNP
rs1040500558 141 dbSNP
rs776584473 149 dbSNP
rs891972650 154 dbSNP
rs62379401 156 dbSNP
rs936251707 162 dbSNP
rs553196629 174 dbSNP
rs1419512497 175 dbSNP
rs534779008 176 dbSNP
rs1403225264 181 dbSNP
rs1478428828 182 dbSNP
rs1163864032 185 dbSNP
rs1246035746 188 dbSNP
rs926224644 189 dbSNP
rs887956909 191 dbSNP
rs1306047011 194 dbSNP
rs1043396292 199 dbSNP
rs1348741311 215 dbSNP
rs1027815060 216 dbSNP
rs566928464 226 dbSNP
rs1293958894 251 dbSNP
rs746936781 252 dbSNP
rs1226816059 258 dbSNP
rs916310804 262 dbSNP
rs991929279 266 dbSNP
rs898102949 269 dbSNP
rs1207921000 271 dbSNP
rs1041012986 278 dbSNP
rs11552680 280 dbSNP
rs777913044 281 dbSNP
rs1258971806 292 dbSNP
rs1339641932 296 dbSNP
rs944735429 308 dbSNP
rs889089470 318 dbSNP
rs1419981159 319 dbSNP
rs182338714 322 dbSNP
rs1369926165 333 dbSNP
rs1435224440 337 dbSNP
rs936036230 341 dbSNP
rs1366336064 347 dbSNP
rs926019298 358 dbSNP
rs1283746345 363 dbSNP
rs1363124515 368 dbSNP
rs1274735854 392 dbSNP
rs977291474 403 dbSNP
rs1295833848 406 dbSNP
rs1342129511 409 dbSNP
rs772165629 416 dbSNP
rs879291341 417 dbSNP
rs1208995107 421 dbSNP
rs917187532 429 dbSNP
rs951950823 439 dbSNP
rs1186485023 440 dbSNP
rs1309019235 440 dbSNP
rs1389312078 442 dbSNP
rs559033221 444 dbSNP
rs1027551636 445 dbSNP
rs975146345 462 dbSNP
rs1412790231 463 dbSNP
rs1333787082 466 dbSNP
rs1346068647 469 dbSNP
rs1437512636 470 dbSNP
rs748216089 477 dbSNP
rs1319044817 487 dbSNP
rs779155448 489 dbSNP
rs926928507 500 dbSNP
rs1235688450 501 dbSNP
rs1019409474 502 dbSNP
rs1342301122 515 dbSNP
rs1218182019 519 dbSNP
rs983746714 525 dbSNP
rs952506127 531 dbSNP
rs1206422771 534 dbSNP
rs755177106 536 dbSNP
rs1468698967 537 dbSNP
rs11552684 545 dbSNP
rs1200947101 546 dbSNP
rs1429585878 548 dbSNP
rs1477646773 553 dbSNP
rs1172110892 564 dbSNP
rs1408806822 568 dbSNP
rs1459076672 570 dbSNP
rs1157145115 583 dbSNP
rs189752088 587 dbSNP
rs1325916632 590 dbSNP
rs754142823 592 dbSNP
rs891941523 594 dbSNP
rs14549 599 dbSNP
rs962491105 601 dbSNP
rs1279685132 606 dbSNP
rs14548 606 dbSNP
rs188872257 612 dbSNP
rs1000391618 614 dbSNP
rs1424592020 621 dbSNP
rs183965913 622 dbSNP
rs1044687890 624 dbSNP
rs1211472574 643 dbSNP
rs947678468 647 dbSNP
rs1451035946 649 dbSNP
rs750908848 655 dbSNP
rs1181184969 656 dbSNP
rs1479570241 659 dbSNP
rs191693762 668 dbSNP
rs1180331356 671 dbSNP
rs1458576251 672 dbSNP
rs3209711 676 dbSNP
rs1165429037 695 dbSNP
rs1050450301 701 dbSNP
rs1257374710 703 dbSNP
rs535411611 705 dbSNP
rs1000193256 707 dbSNP
rs939115895 712 dbSNP
rs1351827182 713 dbSNP
rs1407396924 714 dbSNP
rs907657918 720 dbSNP
rs904631159 724 dbSNP
rs1355745806 728 dbSNP
rs1246534352 729 dbSNP
rs1263519945 731 dbSNP
rs1355311108 733 dbSNP
rs1196311964 735 dbSNP
rs1222141106 745 dbSNP
rs1352860230 748 dbSNP
rs748689683 750 dbSNP
rs530066140 752 dbSNP
rs1251164614 761 dbSNP
rs930517141 762 dbSNP
rs1289587193 771 dbSNP
rs775374528 773 dbSNP
rs1409573587 776 dbSNP
rs1371686389 777 dbSNP
rs1472649765 782 dbSNP
rs1169803478 794 dbSNP
rs1372994547 803 dbSNP
rs917032703 805 dbSNP
rs1306950103 809 dbSNP
rs769903010 810 dbSNP
rs920503194 811 dbSNP
rs1310054766 814 dbSNP
rs1339691293 816 dbSNP
rs1426932624 817 dbSNP
rs1184728759 818 dbSNP
rs1304770916 820 dbSNP
rs1227827820 821 dbSNP
rs1464353770 822 dbSNP
rs1466768081 831 dbSNP
rs867465041 848 dbSNP
rs1358593742 849 dbSNP
rs1204333794 857 dbSNP
rs1274028287 865 dbSNP
rs565860567 867 dbSNP
rs1174376383 871 dbSNP
rs1254277093 875 dbSNP
rs937292079 882 dbSNP
rs927212677 883 dbSNP
rs1392416969 884 dbSNP
rs1448268329 888 dbSNP
rs965047953 902 dbSNP
rs983777856 914 dbSNP
rs866849831 921 dbSNP
rs1412606511 928 dbSNP
rs1018959814 932 dbSNP
rs1435355991 939 dbSNP
rs987905622 941 dbSNP
rs962238192 943 dbSNP
rs1258036294 946 dbSNP
rs781654791 951 dbSNP
rs1019494793 953 dbSNP
rs1304012164 972 dbSNP
rs1312868561 982 dbSNP
rs1182023124 990 dbSNP
rs1482726896 1004 dbSNP
rs1052469 1009 dbSNP
rs1240956210 1023 dbSNP
rs1344665306 1025 dbSNP
rs956092056 1036 dbSNP
rs1210037920 1041 dbSNP
rs1009058389 1052 dbSNP
rs547644416 1054 dbSNP
rs1031801944 1064 dbSNP
rs1248550003 1072 dbSNP
rs1268610445 1074 dbSNP
rs1000359005 1076 dbSNP
rs1173393066 1088 dbSNP
rs1000225862 1098 dbSNP
rs1457454583 1103 dbSNP
rs1160838359 1105 dbSNP
rs1386221911 1109 dbSNP
rs55774248 1118 dbSNP
rs1239001046 1122 dbSNP
rs371797440 1123 dbSNP
rs562406638 1123 dbSNP
rs904701488 1135 dbSNP
rs1315291256 1136 dbSNP
rs1396757436 1141 dbSNP
rs1023598438 1146 dbSNP
rs1299363895 1148 dbSNP
rs532350395 1157 dbSNP
rs894772929 1174 dbSNP
rs895894044 1176 dbSNP
rs1229252896 1178 dbSNP
rs1270208924 1179 dbSNP
rs1389523967 1180 dbSNP
rs1057396028 1183 dbSNP
rs1266372523 1188 dbSNP
rs1158267662 1189 dbSNP
rs1451561227 1193 dbSNP
rs1369912334 1202 dbSNP
rs1165206856 1204 dbSNP
rs373560554 1207 dbSNP
rs1409369400 1212 dbSNP
rs566361988 1213 dbSNP
rs1048272322 1215 dbSNP
rs886186730 1216 dbSNP
rs1456345576 1220 dbSNP
rs930995853 1221 dbSNP
rs1047503259 1222 dbSNP
rs752174645 1228 dbSNP
rs918211070 1231 dbSNP
rs1345004318 1237 dbSNP
rs1410463412 1244 dbSNP
rs930443567 1247 dbSNP
rs764888929 1248 dbSNP
rs1348907402 1255 dbSNP
rs972515450 1256 dbSNP
rs1464925861 1260 dbSNP
rs1313898139 1264 dbSNP
rs186908839 1264 dbSNP
rs1323810975 1277 dbSNP
rs1220041929 1278 dbSNP
rs1246906038 1279 dbSNP
rs920459830 1283 dbSNP
rs1483653653 1284 dbSNP
rs1206730051 1290 dbSNP
rs943817414 1295 dbSNP
rs912311223 1296 dbSNP
rs1182026648 1300 dbSNP
rs144657101 1301 dbSNP
rs542112897 1306 dbSNP
rs1485181619 1308 dbSNP
rs1267827803 1311 dbSNP
rs953513121 1313 dbSNP
rs1029260567 1314 dbSNP
rs1359239072 1319 dbSNP
rs1313153038 1320 dbSNP
rs1368775059 1324 dbSNP
rs1303604109 1325 dbSNP
rs1230914757 1334 dbSNP
rs574820619 1347 dbSNP
rs978969834 1349 dbSNP
rs1343578761 1356 dbSNP
rs968714784 1362 dbSNP
rs1317726905 1363 dbSNP
rs1380664865 1366 dbSNP
rs553268467 1369 dbSNP
rs1392777398 1380 dbSNP
rs1020738869 1381 dbSNP
rs1010237088 1387 dbSNP
rs1294092299 1399 dbSNP
rs1482059054 1399 dbSNP
rs1390558871 1402 dbSNP
rs1451318894 1404 dbSNP
rs759268535 1406 dbSNP
rs1334893289 1407 dbSNP
rs1361154670 1407 dbSNP
rs895913462 1407 dbSNP
rs1035768756 1410 dbSNP
rs879653402 1414 dbSNP
rs987469888 1422 dbSNP
rs1457189332 1433 dbSNP
rs181180328 1434 dbSNP
rs1363517377 1442 dbSNP
rs956061333 1444 dbSNP
rs1001338831 1458 dbSNP
rs905678993 1461 dbSNP
rs924658480 1466 dbSNP
rs1338211067 1476 dbSNP
rs541199622 1477 dbSNP
rs1280089968 1482 dbSNP
rs1310143250 1491 dbSNP
rs1202628372 1496 dbSNP
rs370980000 1497 dbSNP
rs751137779 1506 dbSNP
rs577372732 1511 dbSNP
rs897060620 1517 dbSNP
rs1388941928 1539 dbSNP
rs770833257 1543 dbSNP
rs968849080 1547 dbSNP
rs1478295445 1552 dbSNP
rs1190392015 1557 dbSNP
rs1173297525 1572 dbSNP
rs1023145682 1576 dbSNP
rs1412992135 1581 dbSNP
rs1013528879 1586 dbSNP
rs1270072671 1587 dbSNP
rs912328660 1589 dbSNP
rs1459114047 1595 dbSNP
rs190423595 1600 dbSNP
rs1326398819 1601 dbSNP
rs1437801945 1602 dbSNP
rs1276169283 1603 dbSNP
rs1254491707 1609 dbSNP
rs1364809225 1610 dbSNP
rs1211005304 1615 dbSNP
rs1490277988 1622 dbSNP
rs1290057550 1624 dbSNP
rs878900024 1628 dbSNP
rs1206633588 1629 dbSNP
rs377102682 1629 dbSNP
rs1288686400 1631 dbSNP
rs201906590 1643 dbSNP
rs142057530 1644 dbSNP
rs1200838167 1651 dbSNP
rs960298494 1657 dbSNP
rs1036393331 1664 dbSNP
rs1003154230 1665 dbSNP
rs886113391 1672 dbSNP
rs1199000447 1677 dbSNP
rs760591483 1682 dbSNP
rs1225306041 1687 dbSNP
rs1157491670 1690 dbSNP
rs1458993685 1690 dbSNP
rs765748960 1690 dbSNP
rs1384683845 1691 dbSNP
rs1047446795 1694 dbSNP
rs994560218 1709 dbSNP
rs1326036470 1711 dbSNP
rs1404284209 1717 dbSNP
rs1363422408 1721 dbSNP
rs978918969 1722 dbSNP
rs1403850691 1730 dbSNP
rs898939839 1733 dbSNP
rs968998836 1736 dbSNP
rs1313177413 1738 dbSNP
rs1226169328 1740 dbSNP
rs1309628547 1741 dbSNP
rs1038849244 1744 dbSNP
rs185270259 1751 dbSNP
rs375752799 1753 dbSNP
rs911808509 1754 dbSNP
rs1051690531 1757 dbSNP
rs934610858 1760 dbSNP
rs180692691 1761 dbSNP
rs78124410 1768 dbSNP
rs968815661 1780 dbSNP
rs565943909 1782 dbSNP
rs547733626 1790 dbSNP
rs1363589970 1791 dbSNP
rs916001933 1799 dbSNP
rs1480397400 1801 dbSNP
rs1383965267 1809 dbSNP
rs538405639 1814 dbSNP
rs189175255 1816 dbSNP
rs185560075 1822 dbSNP
rs1272521947 1827 dbSNP
rs531479402 1835 dbSNP
rs182267519 1836 dbSNP
rs778871728 1837 dbSNP
rs1303810991 1846 dbSNP
rs76654444 1849 dbSNP
rs1358731151 1860 dbSNP
rs1229037747 1866 dbSNP
rs527312281 1869 dbSNP
rs890774047 1870 dbSNP
rs1443182631 1874 dbSNP
rs1190132041 1878 dbSNP
rs994485958 1885 dbSNP
rs146008544 1887 dbSNP
rs1444572719 1888 dbSNP
rs1290202243 1890 dbSNP
rs1391513076 1893 dbSNP
rs1459984819 1896 dbSNP
rs1166787447 1897 dbSNP
rs1402525792 1901 dbSNP
rs932424265 1903 dbSNP
rs1332013276 1914 dbSNP
rs1381699623 1916 dbSNP
rs755544740 1918 dbSNP
rs1039232055 1920 dbSNP
rs1326403121 1921 dbSNP
rs1397443278 1925 dbSNP
rs1225383429 1932 dbSNP
rs1007362422 1936 dbSNP
rs1043272072 1946 dbSNP
rs947525407 1947 dbSNP
rs1241684892 1949 dbSNP
rs913489804 1955 dbSNP
rs890290254 1956 dbSNP
rs1467824924 1958 dbSNP
rs1189794937 1959 dbSNP
rs1250497367 1962 dbSNP
rs1427231031 1977 dbSNP
rs1051659074 1980 dbSNP
rs546635203 1981 dbSNP
rs934576342 1982 dbSNP
rs1162049117 1983 dbSNP
rs1377688909 1986 dbSNP
rs1467272511 1987 dbSNP
rs1473099757 1992 dbSNP
rs903128557 1994 dbSNP
rs539163109 1997 dbSNP
rs947412780 2008 dbSNP
rs756440150 2010 dbSNP
rs1444350155 2012 dbSNP
rs1257210650 2013 dbSNP
rs374448278 2013 dbSNP
rs10051026 2014 dbSNP
rs928822119 2022 dbSNP
rs982942148 2025 dbSNP
rs1294961242 2029 dbSNP
rs1331681846 2030 dbSNP
rs1235734207 2033 dbSNP
rs550354155 2047 dbSNP
rs1261439629 2050 dbSNP
rs1321569832 2053 dbSNP
rs1209796373 2060 dbSNP
rs1323065492 2060 dbSNP
rs960312990 2070 dbSNP
rs928616600 2072 dbSNP
rs951614075 2082 dbSNP
rs970154391 2085 dbSNP
rs781692017 2087 dbSNP
rs1434358784 2090 dbSNP
rs1196867504 2096 dbSNP
rs1428211690 2102 dbSNP
rs1472710686 2103 dbSNP
rs530654682 2108 dbSNP
rs1450033208 2109 dbSNP
rs995327290 2116 dbSNP
rs1340683743 2121 dbSNP
rs961207677 2123 dbSNP
rs1015944902 2127 dbSNP
rs973086498 2130 dbSNP
rs752187625 2133 dbSNP
rs1229234711 2138 dbSNP
rs963384821 2143 dbSNP
rs1315435411 2145 dbSNP
rs867168461 2151 dbSNP
rs1449793389 2160 dbSNP
rs1017316143 2161 dbSNP
rs190163553 2170 dbSNP
rs543531411 2171 dbSNP
rs1401808859 2180 dbSNP
rs1030155990 2185 dbSNP
rs1219700621 2198 dbSNP
rs1267540217 2202 dbSNP
rs142542194 2204 dbSNP
rs1157189228 2208 dbSNP
rs947561987 2209 dbSNP
rs998709986 2212 dbSNP
rs754590353 2216 dbSNP
rs903097399 2229 dbSNP
rs1043028455 2234 dbSNP
rs1422668068 2236 dbSNP
rs138108274 2239 dbSNP
rs1364981213 2240 dbSNP
rs894468427 2245 dbSNP
rs10900827 2258 dbSNP
rs938752546 2260 dbSNP
rs1313876209 2261 dbSNP
rs928748251 2264 dbSNP
rs1446350291 2265 dbSNP
rs982910840 2272 dbSNP
rs1229793863 2273 dbSNP
rs1356830710 2275 dbSNP
rs930178698 2279 dbSNP
rs970016892 2287 dbSNP
rs766165571 2296 dbSNP
rs1313870281 2306 dbSNP
rs536619262 2307 dbSNP
rs184505625 2308 dbSNP
rs974104006 2310 dbSNP
rs974735640 2322 dbSNP
rs961505083 2323 dbSNP
rs963054470 2325 dbSNP
rs1366668536 2327 dbSNP
rs1017703289 2332 dbSNP
rs74659792 2333 dbSNP
rs1429501847 2334 dbSNP
rs370580868 2336 dbSNP
rs866892518 2352 dbSNP
rs1303803092 2357 dbSNP
rs1385348927 2358 dbSNP
rs538964689 2363 dbSNP
rs116122717 2364 dbSNP
rs1343469781 2366 dbSNP
rs1407407353 2375 dbSNP
rs549975278 2379 dbSNP
rs774407106 2382 dbSNP
rs1043501334 2393 dbSNP
rs1210313357 2410 dbSNP
rs1264776774 2416 dbSNP
rs1009282745 2419 dbSNP
rs1182939888 2422 dbSNP
rs903026046 2425 dbSNP
rs4615337 2435 dbSNP
rs1053328130 2436 dbSNP
rs1475152017 2456 dbSNP
rs1188414477 2463 dbSNP
rs1011926008 2464 dbSNP
rs894422019 2465 dbSNP
rs566995678 2469 dbSNP
rs1240249418 2472 dbSNP
rs907492602 2474 dbSNP
rs775557382 2476 dbSNP
rs1468614011 2483 dbSNP
rs766635221 2487 dbSNP
rs1366643584 2491 dbSNP
rs1044596311 2493 dbSNP
rs548673302 2494 dbSNP
rs1056182033 2497 dbSNP
rs1002915414 2499 dbSNP
rs948741633 2502 dbSNP
rs775268880 2503 dbSNP
rs771978745 2505 dbSNP
rs1219479207 2506 dbSNP
rs1320947681 2513 dbSNP
rs763095446 2513 dbSNP
rs1202845447 2515 dbSNP
rs907289615 2522 dbSNP
rs1448671950 2528 dbSNP
rs527252937 2532 dbSNP
rs1240458253 2533 dbSNP
rs1047144406 2545 dbSNP
rs1191823225 2557 dbSNP
rs1274981718 2560 dbSNP
rs930108200 2562 dbSNP
rs1359306299 2564 dbSNP
rs878975847 2566 dbSNP
rs1268896856 2572 dbSNP
rs920112801 2577 dbSNP
rs1038590619 2588 dbSNP
rs1402959399 2591 dbSNP
rs1346483280 2592 dbSNP
rs1316803818 2595 dbSNP
rs1302931343 2598 dbSNP
rs1368159002 2605 dbSNP
rs559758451 2612 dbSNP
rs942931865 2629 dbSNP
rs1436639203 2630 dbSNP
rs1284613979 2635 dbSNP
rs578026719 2645 dbSNP
rs1222456053 2650 dbSNP
rs547773626 2652 dbSNP
rs532872154 2653 dbSNP
rs1417486456 2654 dbSNP
rs922980704 2659 dbSNP
rs955164349 2670 dbSNP
rs565322963 2671 dbSNP
rs1223406831 2674 dbSNP
rs1480724816 2678 dbSNP
rs570817278 2686 dbSNP
rs977172105 2692 dbSNP
rs1489925486 2693 dbSNP
rs745955780 2695 dbSNP
rs1021890075 2696 dbSNP
rs1268178954 2697 dbSNP
rs1011433565 2699 dbSNP
rs564604003 2700 dbSNP
rs1406458600 2703 dbSNP
rs1363088787 2704 dbSNP
rs1403983809 2708 dbSNP
rs1308204391 2709 dbSNP
rs765519105 2719 dbSNP
rs1034304988 2724 dbSNP
rs1278733962 2726 dbSNP
rs1483941862 2735 dbSNP
rs1248006329 2737 dbSNP
rs1294050574 2739 dbSNP
rs967715870 2745 dbSNP
rs1222052798 2758 dbSNP
rs191647340 2781 dbSNP
rs1203421729 2782 dbSNP
rs1002796301 2783 dbSNP
rs1280146685 2785 dbSNP
rs1232653099 2798 dbSNP
rs1022001548 2802 dbSNP
rs544796211 2804 dbSNP
rs1382873958 2807 dbSNP
rs1423502671 2810 dbSNP
rs1047115509 2812 dbSNP
rs1398267986 2818 dbSNP
rs1035168049 2822 dbSNP
rs1327952040 2826 dbSNP
rs746189388 2830 dbSNP
rs898615721 2833 dbSNP
rs1454545719 2837 dbSNP
rs1038923170 2840 dbSNP
rs942919575 2844 dbSNP
rs373156920 2847 dbSNP
rs576731166 2850 dbSNP
rs781417294 2855 dbSNP
rs1044629585 2856 dbSNP
rs757710131 2862 dbSNP
rs1462006232 2870 dbSNP
rs1185783244 2872 dbSNP
rs116840277 2874 dbSNP
rs1444556736 2875 dbSNP
rs1178319270 2880 dbSNP
rs1038396390 2881 dbSNP
rs932932983 2884 dbSNP
rs922949274 2885 dbSNP
rs908638711 2894 dbSNP
rs987267543 2896 dbSNP
rs1473427957 2901 dbSNP
rs1405352761 2902 dbSNP
rs977139647 2912 dbSNP
rs112280783 2913 dbSNP
rs914367327 2915 dbSNP
rs754502525 2918 dbSNP
rs189686274 2919 dbSNP
rs1022613671 2920 dbSNP
rs1238915704 2924 dbSNP
rs6596170 2933 dbSNP
rs1461273482 2934 dbSNP
rs186861913 2942 dbSNP
rs544952181 2944 dbSNP
rs971345857 2945 dbSNP
rs1429606423 2948 dbSNP
rs1481213082 2952 dbSNP
rs766079659 2958 dbSNP
rs1405013022 2960 dbSNP
rs577901740 2961 dbSNP
rs994150919 2962 dbSNP
rs370064300 2963 dbSNP
rs1371442209 2965 dbSNP
rs1017052207 2967 dbSNP
rs1382662780 2973 dbSNP
rs1380641411 2976 dbSNP
rs1304862147 2979 dbSNP
rs1297649004 2981 dbSNP
rs1007433464 2985 dbSNP
rs1346451878 2990 dbSNP
rs1225521188 2992 dbSNP
rs889963145 2993 dbSNP
rs1013020032 2994 dbSNP
rs1240419286 2997 dbSNP
rs1051323492 3002 dbSNP
rs1405481239 3003 dbSNP
rs537999350 3012 dbSNP
rs1334554932 3014 dbSNP
rs1038999427 3020 dbSNP
rs1490742972 3028 dbSNP
rs902796013 3031 dbSNP
rs183997037 3036 dbSNP
rs1419503320 3042 dbSNP
rs1160974382 3044 dbSNP
rs747246760 3046 dbSNP
rs1158102430 3047 dbSNP
rs1362055688 3062 dbSNP
rs1417130184 3070 dbSNP
rs1452949556 3079 dbSNP
rs1415466991 3082 dbSNP
rs1366198366 3085 dbSNP
rs1183852402 3086 dbSNP
rs1301474974 3087 dbSNP
rs945728774 3089 dbSNP
rs1367147292 3090 dbSNP
rs1392376433 3091 dbSNP
rs755840307 3093 dbSNP
rs6596169 3094 dbSNP
rs572751759 3099 dbSNP
rs774126355 3100 dbSNP
rs927163113 3105 dbSNP
rs1248081125 3107 dbSNP
rs981272064 3115 dbSNP
rs764050715 3116 dbSNP
rs1426681489 3123 dbSNP
rs762971803 3125 dbSNP
rs1025554298 3126 dbSNP
rs1161717902 3131 dbSNP
rs1300284845 3132 dbSNP
rs1349585223 3132 dbSNP
rs1371548685 3137 dbSNP
rs1446739745 3139 dbSNP
rs1385573480 3152 dbSNP
rs972698212 3154 dbSNP
rs1243223581 3157 dbSNP
rs962749062 3158 dbSNP
rs1288507890 3160 dbSNP
rs1315551097 3162 dbSNP
rs1307728816 3163 dbSNP
rs1206098571 3164 dbSNP
rs1017392583 3167 dbSNP
rs1249435210 3176 dbSNP
rs1480158984 3179 dbSNP
rs1039579498 3181 dbSNP
rs946518289 3182 dbSNP
rs915173683 3192 dbSNP
rs1181888055 3197 dbSNP
rs552692233 3199 dbSNP
rs1382055562 3200 dbSNP
rs1172756929 3201 dbSNP
rs1313024305 3202 dbSNP
rs889922495 3205 dbSNP
rs769940273 3208 dbSNP
rs1465467053 3215 dbSNP
rs1029823138 3218 dbSNP
rs879051050 3219 dbSNP
rs927585736 3221 dbSNP
rs1437456562 3222 dbSNP
rs1293055133 3224 dbSNP
rs1316889794 3225 dbSNP
rs981734385 3226 dbSNP
rs998378047 3230 dbSNP
rs902759911 3238 dbSNP
rs11750335 3246 dbSNP
rs1288254744 3247 dbSNP
rs1023328374 3248 dbSNP
rs1451301741 3249 dbSNP
rs776973327 3250 dbSNP
rs771175451 3251 dbSNP
rs541849090 3252 dbSNP
rs1257957935 3255 dbSNP
rs1188323272 3258 dbSNP
rs1163757928 3260 dbSNP
rs963181527 3260 dbSNP
rs1443635278 3264 dbSNP
rs1017190173 3268 dbSNP
rs1383068672 3270 dbSNP
rs1334028298 3275 dbSNP
rs191166801 3285 dbSNP
rs1428646620 3297 dbSNP
rs1004840113 3298 dbSNP
rs10491323 3313 dbSNP
rs1051569651 3316 dbSNP
rs75147392 3319 dbSNP
rs899944865 3321 dbSNP
rs10491322 3323 dbSNP
rs1289945254 3327 dbSNP
rs946549516 3333 dbSNP
rs1218104879 3334 dbSNP
rs915018241 3335 dbSNP
rs779714303 3339 dbSNP
rs981236058 3341 dbSNP
rs1200358412 3342 dbSNP
rs1327129689 3345 dbSNP
rs1479689257 3349 dbSNP
rs1172326546 3359 dbSNP
rs1409442912 3360 dbSNP
rs1402939562 3365 dbSNP
rs1156334674 3368 dbSNP
rs1294705916 3377 dbSNP
rs1405216166 3381 dbSNP
rs1380468509 3383 dbSNP
rs1304532066 3390 dbSNP
rs755750340 3398 dbSNP
rs1435576369 3407 dbSNP
rs918467960 3414 dbSNP
rs1279903855 3420 dbSNP
rs935279106 3429 dbSNP
rs1420426741 3431 dbSNP
rs927884557 3432 dbSNP
rs1423834749 3437 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5515.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuUUAGAGAU--GUCU----UCGGGGUau 5'
            | || |||  || |    |||||||  
Target 5' uuAUUCCCUACUCAAAUCUCAGCCCCA-- 3'
 		2 - 28
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903828
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_9124
Location of target site NM_002715 | 3UTR | AUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002715 | 3UTR | AACACCUCGUGAAUACAAUUUAACUUCCAUUUAGCUAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_002715 | 3UTR | CACCUCGUGAAUACAAUUUAACUUCCAUUUAGCUAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002715 | 3UTR | CACCUCGUGAAUACAAUUUAACUUCCAUUUAGCUAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002715 | 3UTR | UACAAUUUAACUUCCAUUUAGCUAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002715 | 3UTR | CAAUUUAACUUCCAUUUAGCUAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002715 | 3UTR | UAUAGCUUUACUCAGCAUGACUGUAGAUAAGGAUAGCAGCAAACAAUCAUUGGAGCUUAAUGAACAUUUUUAAAAAUAAUUACCAAGGCCUCCCUUCUACUUGUGAGUUUUGAAAUUGUUCUUUUUAUUUUCAGGGAUACCGUUUAAUUUAAUUAUAUGAUUUGUCUGCACUCAGUUUAUUCCCUACUCAAAUCUCAGCCCCAUGUUGUUCUUUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000481195.1 | 3UTR | UUUAUUCCCUACUCAAAUCUCAGCCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
32 hsa-miR-3675-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT366903 NONO non-POU domain containing octamer binding 2 2
MIRT453894 DUSP18 dual specificity phosphatase 18 2 2
MIRT461725 ZNF426 zinc finger protein 426 2 2
MIRT464694 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465957 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466038 TMEM189 transmembrane protein 189 2 2
MIRT471546 PAX5 paired box 5 2 2
MIRT472813 MTMR12 myotubularin related protein 12 2 2
MIRT474099 LMBR1L limb development membrane protein 1 like 2 2
MIRT480205 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 2 2
MIRT488268 HSP90AB1 heat shock protein 90 alpha family class B member 1 2 8
MIRT491222 MRPL34 mitochondrial ribosomal protein L34 2 2
MIRT494768 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497228 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT501676 PFN1 profilin 1 2 6
MIRT511831 H2AFX H2A histone family member X 2 4
MIRT513880 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT519402 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT522627 MAP7D1 MAP7 domain containing 1 2 4
MIRT546998 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT555119 PUM2 pumilio RNA binding family member 2 2 2
MIRT560380 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT572188 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT634822 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT641149 DNMBP dynamin binding protein 2 2
MIRT647389 ZNF616 zinc finger protein 616 2 2
MIRT670851 SFT2D2 SFT2 domain containing 2 2 2
MIRT698600 TEX261 testis expressed 261 2 2
MIRT698691 TBPL1 TATA-box binding protein like 1 2 2
MIRT708725 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT718340 SYNDIG1L synapse differentiation inducing 1 like 2 2
MIRT725514 FBXO46 F-box protein 46 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3675 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-3675-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-3675-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission