miRTarBase - #MIRT547020


—
pre-miRNA Information
pre-miRNA hsa-mir-2909   
Genomic Coordinates chr17: 37033745 - 37033813
Description Homo sapiens miR-2909 stem-loop
Comment This miRNA was referred to as hmiR-che-1 in .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2909
Sequence 4| GUUAGGGCCAACAUCUCUUGG |24
Evidence Experimental
Experiments QPCR
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs187707102 7 dbSNP
rs1375183104 8 dbSNP
rs1174848003 11 dbSNP
rs576577155 21 dbSNP
Putative Targets

Gene Information
Gene Symbol PPP1CB   
Synonyms HEL-S-80p, NSLH2, PP-1B, PP1B, PP1beta, PPP1CD
Description protein phosphatase 1 catalytic subunit beta
Transcript NM_002709   
Other Transcripts NM_206876   
Expression
Putative miRNA Targets on PPP1CB
3'UTR of PPP1CB
(miRNA target sites are highlighted)		 
>PPP1CB|NM_002709|3'UTR
   1 AGAAAGGAATTCTGTAAAGAAACCATCAGATTTGTTAAGGACATACTTCATAATATATAAGTGTGCACTGTAAAACCATC
  81 CAGCCATTTGACACCCTTTATGATGTCACACCTTTAACTTAAGGAGACGGGTAAAGGATCTTAAATTTTTTTCTAATAGA
 161 AAGATGTGCTACACTGTATTGTAATAAGTATACTCTGTTATAGTCAACAAAGTTAAATCCAAATTCAAAATTATCCATTA
 241 AAGTTACATCTTCATGTATCACAATTTTTAAAGTTGAAAAGCATCCCAGTTAAACTAGATGTGATAGTTAAACCAGATGA
 321 AAGCATGATGATCCATCTGTGTAATGTGGTTTTAGTGTTGCTTGGTTGTTTAATTATTTTGAGCTTGTTTTGTTTTTGTT
 401 TGTTTTCACTAGAATAATGGCAAATACTTCTAATTTTTTTCCCTAAACATTTTTAAAAGTGAAATATGGGAAGAGCTTTA
 481 CAGACATTCACCAACTATTATTTTCCCTTGTTTATCTACTTAGATATCTGTTTAATCTTACTAAGAAAACTTTCGCCTCA
 561 TTACATTAAAAAGGAATTTTAGAGATTGATTGTTTTAAAAAAAAATACGCACATTGTCCAATCCAGTGATTTTAATCATA
 641 CAGTTTGACTGGGCAAACTTTACAGCTGATAGTGAATATTTTGCTTTATACAGGAATTGACACTGATTTGGATTTGTGCA
 721 CTCTAATTTTTAACTTATTGATGCTCTATTGTGCAGTAGCATTTCATTTAAGATAAGGCTCATATAGTATTACCCAACTA
 801 GTTGGTAATGTGATTATGTGGTACCTTGGCTTTAGGTTTTCATTCGCACGGAACACCTTTTGGCATGCTTAACTTCCTGG
 881 TAACACCTTCACCTGCATTGGTTTTCTTTTTCTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGTTGTTGTTTGT
 961 TTTTAGATCCACAGTACATGAGAATCCTTTTTTGACAAGCCTTGGAAAGCTGACACTGTCTCTTTTTCCTCCCTCTATAC
1041 GAAGGATGTATTTAAATGAATGCTGGTCAGTGGGACATTTTGTCAACTATGGGTATTGGGTGCTTAACTGTCTAATATTG
1121 CCATGTGAATGTTGTATACGATTGTAAGGCTTATGTCACTAAAGATTTTTATTCTGATTTTTTCATAATCAAAGGTCATA
1201 TGATACTGTATAGACAAGCTTTGTAGTGAAGTATAGTAGCAATAATTTCTGTACCTGATCAAGTTTATTGCAGCCTTTCT
1281 TTTCCTATTTCTTTTTTTTAAGGGTTAGTATTAACAAATGGCAATGAGTAGAAAAGTTAACATGAAGATTTTAGAAGGAG
1361 AGAACTTACAGGACACAGATTTGTGATTCTTTGACTGTGACACTATTGGATGTGATTCTAAAAGCTTTTATTGAGCATTG
1441 TCAAATTTGTAAGCTTCATAGGGATGGACATCATATCTATAATGCCCTTCTATATGTGCTACCATAGATGTGACATTTTT
1521 GACCTTAATATCGTCTTTGAAAATGTTAAATTGAGAAACCTGTTAACTTACATTTTATGAATTGGCACATTGTATTACTT
1601 ACTGCAAGAGATATTTCATTTTCAGCACAGTGCAAAAGTTCTTTAAAATGCATATGTCTTTTTTTCTAATTCCGTTTTGT
1681 TTTAAAGCACATTTTAAATGTAGTTTTCTCATTTAGTAAAAGTTGTCTAATTGATATGAAGCCTGACTGATTTTTTTTTT
1761 CCTTACAGTGAGACATTTAAGCACACATTTTATTCACATAGATACTATGTCCTTGACATATTGAAATGATTCTTTTCTGA
1841 AAGTATTCATGATCTGCATATGATGTATTAGGTTAGGTCACAAAGGTTTTATCTGAGGTGATTTAAATAACTTCCTGATT
1921 GGAGTGTGTAAGCTGAGCGATTTCTAATAAAATTTTAGTTGTACACTTTTAGTAGTCATAGTGAAGCAGGTCTAGAAAAT
2001 AAGCCTTTGGCAGGGAAAAAGGGCAATGTTGATTAATCTCAGTATTAAACCACATTAATCTGTATCCCATTGTCTGGCTT
2081 TTGTAAATTCATCCAGGTCAAGACTAAGTATGTTGGTTAATAGGAATCCTTTTTTTTTTTTTTAAAGACTAAATGTGAAA
2161 AAATAATCACTACTTAAGCTAATTAATATTGGTCATTAAATTTAAAGGATGGAAATTTATCATGTTTAAAAATTATTCAA
2241 GCACTCTTAAAACCACTTAAACAGCCTCCAGTCATAAAAATGTGTTCTTTACAAATATTTGCTTGGCAACACGACTTGAA
2321 ATAAATAAAACTTTGTTTCTTAGGAGAAAATGATTCTGTAATTCCAGTGTCACTAATTTATATTGTTCTTTCCTCTGATT
2401 TTTTTCAGGTTAGTGATTTTTTTGTATACAATTTAATCCAAATGTTATGACATTCAGAAATCATGAAACACAGTAGATAT
2481 CTGTTATAATGTGGTGTATCACATGGATTATAAAGCAAAGTTATGGTCGATTTCTATTCTTGAAAGAATCAACTACAGTG
2561 AATCCTTTGCATTTGAAGCCTTAACATGCATTGCTTTAATTTTGCCCAGGGACAAATTTTAATAATCAGCAAGACTGGTT
2641 TGTGCAAAGCGTTGAGTCATCAGGTATTTAGAGCCTAGCCAGCTACCCAGTATCCATGCTGCCATATCCCTTCATTGTAA
2721 AAAGTACCTAAACATTCGTGAAATGATTTTTTTTAGCTGAAAAATGCTGGCAAGAAGAATTTTAAAGCTTAAAATAGGTG
2801 GTAAATTTGAAGTATGAGTGTGTTCACGAGAAACATAGGCTTTTCAAAAAAATTTTTATTCAAGGCAAAGCAAGGAACAT
2881 CTTGAGATATGTCTCAAGAATATAAAGATGTATTATTTTAAGCCAAGGAGCTGAAATATATCTCAGTTTATAAATTCAGG
2961 TATATTCTTTTTGTCTCCATGGCAACCATAACTTTTGAACCAAAAAAAATTGTTTTTACATCTTTATGCTGAAAATGTGT
3041 TTAGATTAGGAATATGGTCGGGCTGAATTTGCTGTTGCTCCCTAACCAAATCCACCTCTTGTTTTCCTTGTGAGTCCATG
3121 GCTAAATCAAAGCTGCCCCTGAGAAGAGACTTAATCCAAGCCTGATTGTACTAGTGGCATCACTTAGAAGTAGGCTTTCC
3201 CTCTTCCTAGTAGATCTCAATGTTTTATAATTCCTTAAAACAGCTGAAAATTGGGACAACATACTTTACGCAATGAACAG
3281 TAGTTAAATAGGAAATAAACTAGTTCCATATAAGTATACACCTAGAGTTTTAATTACCTTTATAATGTTTCTTAAAAGTG
3361 AAACTTAGATACAATTGTGATTGGATACTTAGATACTAAGTGAAACTTAGTGTAACAATTTTGATCTGTTAAATTGGATT
3441 TTACATGTACATTTGAATGCCAGAATTTCTAAATAAATCCCCTGGTTAGGAAATTTTAAAAGTCAAAGCTTGTTTTCTTC
3521 AACCACTACCTTCTACATTGGTTGACTTAGACCGTAAGCTTTTTAAGTTTCTCATTGTAATTTACCTTCTCATGCAGATT
3601 GCTGATGTTTTATTAAACCTTATTTTTACAAAAATGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguucucUACAAC--CGGGAUUg 5'
                 || |||  |||:||| 
Target 5' cctttgcAT-TTGAAGCCTTAAc 3'
 2564 - 2585 131.00 -9.50
2 
miRNA  3' gguucuCUACAAC-CGGGAUUg 5'
                | |||||  |||||| 
Target 5' gaatttGCTGTTGCTCCCTAAc 3'
 3065 - 3086 127.00 -13.90
3 
miRNA  3' gguucucuacaaccGGGAUUg 5'
                        |||||| 
Target 5' cttctaatttttttCCCTAAa 3'
 427 - 447 120.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30498570 17 COSMIC
COSN26573919 20 COSMIC
COSN31557806 20 COSMIC
COSN31579902 62 COSMIC
COSN9369534 81 COSMIC
COSN31480015 261 COSMIC
COSN31548345 377 COSMIC
COSN31524304 379 COSMIC
COSN31603357 606 COSMIC
COSN31538643 655 COSMIC
COSN29928680 689 COSMIC
COSN29931861 696 COSMIC
COSN25334741 697 COSMIC
COSN6682432 791 COSMIC
COSN6177757 847 COSMIC
COSN31592043 856 COSMIC
COSN20090510 913 COSMIC
COSN17506458 920 COSMIC
COSN18750800 924 COSMIC
COSN32062149 927 COSMIC
COSN31514971 928 COSMIC
COSN31556262 931 COSMIC
COSN30164655 933 COSMIC
COSN31480718 934 COSMIC
COSN30175855 935 COSMIC
COSN31547364 1141 COSMIC
COSN31516408 1165 COSMIC
COSN24706037 1288 COSMIC
COSN31538645 1300 COSMIC
COSN31513588 1626 COSMIC
COSN31537558 1723 COSMIC
COSN31577427 1738 COSMIC
COSN31561710 1744 COSMIC
COSN29091069 1753 COSMIC
COSN27423641 1761 COSMIC
COSN31513392 1761 COSMIC
COSN32061173 2144 COSMIC
COSN15660956 2145 COSMIC
COSN20090513 2241 COSMIC
COSN26119100 2616 COSMIC
COSN5501547 2742 COSMIC
COSN26895922 3162 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774112580 2 dbSNP
rs1037643898 5 dbSNP
rs1458487148 6 dbSNP
rs772154763 10 dbSNP
rs759436583 17 dbSNP
rs569441298 26 dbSNP
rs1425741171 28 dbSNP
rs752610648 29 dbSNP
rs1377943843 46 dbSNP
rs377667743 47 dbSNP
rs763646371 49 dbSNP
rs1168438559 51 dbSNP
rs753428913 53 dbSNP
rs1266867940 68 dbSNP
rs925825910 70 dbSNP
rs1295893456 76 dbSNP
rs1325304686 84 dbSNP
rs78912220 87 dbSNP
rs1483411550 94 dbSNP
rs1277088295 95 dbSNP
rs1051584303 101 dbSNP
rs1339164399 104 dbSNP
rs890202576 106 dbSNP
rs558445414 110 dbSNP
rs200368838 114 dbSNP
rs1055619030 117 dbSNP
rs895592675 119 dbSNP
rs949800886 129 dbSNP
rs1036020530 130 dbSNP
rs1351763084 131 dbSNP
rs897462916 139 dbSNP
rs994433888 145 dbSNP
rs1326476829 146 dbSNP
rs1349227871 147 dbSNP
rs904199729 148 dbSNP
rs1174044949 149 dbSNP
rs1468032075 151 dbSNP
rs1428581457 154 dbSNP
rs767455566 158 dbSNP
rs1027627963 160 dbSNP
rs1159776690 161 dbSNP
rs139256429 177 dbSNP
rs778558008 185 dbSNP
rs1472978169 189 dbSNP
rs1000829645 193 dbSNP
rs1278605633 197 dbSNP
rs1179945598 204 dbSNP
rs1437398178 208 dbSNP
rs1257124283 215 dbSNP
rs1487078362 229 dbSNP
rs1187281306 232 dbSNP
rs1261311673 237 dbSNP
rs1263101903 244 dbSNP
rs534188151 247 dbSNP
rs1229505237 250 dbSNP
rs1330627425 259 dbSNP
rs888636050 263 dbSNP
rs1277205672 265 dbSNP
rs1031907699 284 dbSNP
rs1007500557 288 dbSNP
rs1018438115 289 dbSNP
rs1426741680 290 dbSNP
rs1201085622 296 dbSNP
rs111718819 300 dbSNP
rs397868607 303 dbSNP
rs976795656 318 dbSNP
rs1450234975 336 dbSNP
rs1020306668 353 dbSNP
rs564692456 357 dbSNP
rs1395827631 365 dbSNP
rs967756080 366 dbSNP
rs1454638842 369 dbSNP
rs1410264336 370 dbSNP
rs1458696275 370 dbSNP
rs1172976590 373 dbSNP
rs1024516845 381 dbSNP
rs555625379 386 dbSNP
rs1373347022 392 dbSNP
rs186234982 408 dbSNP
rs367722688 412 dbSNP
rs1185619185 419 dbSNP
rs1443198228 422 dbSNP
rs1242862075 428 dbSNP
rs1289031582 431 dbSNP
rs978721713 432 dbSNP
rs1282763482 446 dbSNP
rs189724576 449 dbSNP
rs980225044 450 dbSNP
rs925886555 453 dbSNP
rs1383802722 459 dbSNP
rs1380241413 475 dbSNP
rs1304973708 480 dbSNP
rs775338689 483 dbSNP
rs937262208 488 dbSNP
rs991315923 492 dbSNP
rs909851276 498 dbSNP
rs1381785162 501 dbSNP
rs962725008 503 dbSNP
rs1343426662 508 dbSNP
rs577078088 508 dbSNP
rs972737473 508 dbSNP
rs1234164229 509 dbSNP
rs1391488339 514 dbSNP
rs1301908650 525 dbSNP
rs767132416 537 dbSNP
rs917078188 550 dbSNP
rs949805792 554 dbSNP
rs1036035256 555 dbSNP
rs545749130 556 dbSNP
rs1485006019 563 dbSNP
rs1189686882 578 dbSNP
rs1476585180 580 dbSNP
rs930280268 581 dbSNP
rs1240915741 582 dbSNP
rs1051510353 583 dbSNP
rs1451700430 584 dbSNP
rs1293251841 590 dbSNP
rs1219804405 597 dbSNP
rs1253667464 597 dbSNP
rs1483787651 597 dbSNP
rs911732287 598 dbSNP
rs371707784 609 dbSNP
rs1331764857 610 dbSNP
rs888723083 610 dbSNP
rs1038798706 613 dbSNP
rs1422816945 616 dbSNP
rs1365250754 622 dbSNP
rs1169440830 623 dbSNP
rs1412036470 624 dbSNP
rs1007132068 627 dbSNP
rs149552572 641 dbSNP
rs904292181 643 dbSNP
rs999851930 646 dbSNP
rs1196732614 648 dbSNP
rs1490038526 654 dbSNP
rs901310395 657 dbSNP
rs368436813 664 dbSNP
rs1052804415 677 dbSNP
rs892049373 679 dbSNP
rs79934788 681 dbSNP
rs1363072042 690 dbSNP
rs1020358890 693 dbSNP
rs967471186 701 dbSNP
rs970271023 704 dbSNP
rs544912726 709 dbSNP
rs1308892243 713 dbSNP
rs1444564856 717 dbSNP
rs1353126774 719 dbSNP
rs1170271635 722 dbSNP
rs1415393911 727 dbSNP
rs761945607 729 dbSNP
rs747662407 739 dbSNP
rs144648067 749 dbSNP
rs750703189 756 dbSNP
rs1411991740 766 dbSNP
rs1178586866 776 dbSNP
rs1479413329 782 dbSNP
rs1346110762 783 dbSNP
rs1231947210 785 dbSNP
rs1210625714 786 dbSNP
rs758513806 790 dbSNP
rs11687800 791 dbSNP
rs1394525500 793 dbSNP
rs972708013 797 dbSNP
rs1322936879 799 dbSNP
rs1304302881 804 dbSNP
rs751896537 808 dbSNP
rs1439536718 809 dbSNP
rs542586754 816 dbSNP
rs918592187 821 dbSNP
rs1324385707 824 dbSNP
rs1225536771 826 dbSNP
rs950603724 830 dbSNP
rs540831245 832 dbSNP
rs1376160489 838 dbSNP
rs560855970 846 dbSNP
rs1306703476 847 dbSNP
rs531453061 850 dbSNP
rs1388734859 861 dbSNP
rs1160739130 864 dbSNP
rs943196284 867 dbSNP
rs180700680 869 dbSNP
rs1274061720 876 dbSNP
rs1446255952 878 dbSNP
rs1240979137 886 dbSNP
rs971174371 887 dbSNP
rs569476111 896 dbSNP
rs1465344252 898 dbSNP
rs1262410051 904 dbSNP
rs113668319 907 dbSNP
rs1039305518 913 dbSNP
rs372363112 913 dbSNP
rs1313282151 916 dbSNP
rs1385448500 916 dbSNP
rs1452365225 919 dbSNP
rs1451043899 920 dbSNP
rs375505625 920 dbSNP
rs879029277 922 dbSNP
rs1344052695 923 dbSNP
rs375367499 923 dbSNP
rs1163852520 924 dbSNP
rs1223502869 924 dbSNP
rs1245762069 924 dbSNP
rs1289842687 924 dbSNP
rs1298414426 924 dbSNP
rs1327356198 924 dbSNP
rs1360666019 924 dbSNP
rs1361941220 924 dbSNP
rs1380975437 924 dbSNP
rs1491573663 924 dbSNP
rs201829322 924 dbSNP
rs398042385 924 dbSNP
rs55736905 924 dbSNP
rs71403623 924 dbSNP
rs1303302792 925 dbSNP
rs1491507197 925 dbSNP
rs1177759828 926 dbSNP
rs1462336436 927 dbSNP
rs545635152 927 dbSNP
rs1249521487 928 dbSNP
rs200107127 928 dbSNP
rs925718237 929 dbSNP
rs1267962354 930 dbSNP
rs201769102 930 dbSNP
rs552142295 931 dbSNP
rs1267085566 932 dbSNP
rs34686032 932 dbSNP
rs1166589305 933 dbSNP
rs1340528685 935 dbSNP
rs1418127447 945 dbSNP
rs1239054553 946 dbSNP
rs1225694623 947 dbSNP
rs371576138 947 dbSNP
rs1284460813 948 dbSNP
rs200876435 948 dbSNP
rs1359752035 949 dbSNP
rs147037543 949 dbSNP
rs1343053443 951 dbSNP
rs1460657955 951 dbSNP
rs1302174240 952 dbSNP
rs1391555625 953 dbSNP
rs1162075160 955 dbSNP
rs935788081 955 dbSNP
rs1389276974 956 dbSNP
rs1355820003 959 dbSNP
rs1225237722 960 dbSNP
rs1270023615 965 dbSNP
rs1443518674 966 dbSNP
rs1298132882 967 dbSNP
rs1371564758 968 dbSNP
rs1429962735 970 dbSNP
rs1178458913 971 dbSNP
rs753691912 973 dbSNP
rs1417027439 980 dbSNP
rs1294064800 987 dbSNP
rs1334441500 988 dbSNP
rs1481476590 989 dbSNP
rs1427229904 995 dbSNP
rs753746824 1013 dbSNP
rs1275179676 1016 dbSNP
rs117687614 1019 dbSNP
rs1252912521 1019 dbSNP
rs15462 1024 dbSNP
rs930395351 1030 dbSNP
rs1049236437 1038 dbSNP
rs1250715306 1041 dbSNP
rs1264342475 1045 dbSNP
rs1481911342 1046 dbSNP
rs910214674 1057 dbSNP
rs1320823835 1058 dbSNP
rs942956087 1071 dbSNP
rs1039952426 1073 dbSNP
rs1337216811 1073 dbSNP
rs760476438 1087 dbSNP
rs770599296 1090 dbSNP
rs1406491974 1093 dbSNP
rs998379701 1107 dbSNP
rs1041896133 1112 dbSNP
rs903301756 1115 dbSNP
rs755341122 1118 dbSNP
rs1404006400 1119 dbSNP
rs1420974141 1126 dbSNP
rs1410061150 1130 dbSNP
rs1172125038 1135 dbSNP
rs1000283818 1141 dbSNP
rs950257690 1153 dbSNP
rs555714753 1155 dbSNP
rs1179875650 1178 dbSNP
rs1439499736 1180 dbSNP
rs1244068764 1185 dbSNP
rs1045997619 1186 dbSNP
rs1460426851 1188 dbSNP
rs906136868 1218 dbSNP
rs1205252096 1220 dbSNP
rs1033429048 1225 dbSNP
rs1017562405 1227 dbSNP
rs1355282501 1229 dbSNP
rs958698852 1234 dbSNP
rs865906884 1235 dbSNP
rs1383275319 1238 dbSNP
rs1413131714 1242 dbSNP
rs1450168596 1246 dbSNP
rs898543173 1248 dbSNP
rs1272179205 1259 dbSNP
rs1012798590 1260 dbSNP
rs1024151638 1261 dbSNP
rs994222489 1268 dbSNP
rs971268971 1271 dbSNP
rs1157063988 1278 dbSNP
rs1025572535 1285 dbSNP
rs1386094749 1288 dbSNP
rs776537167 1288 dbSNP
rs919087496 1303 dbSNP
rs1443137147 1304 dbSNP
rs1237450479 1306 dbSNP
rs759377683 1311 dbSNP
rs951924631 1322 dbSNP
rs1339956512 1325 dbSNP
rs984525306 1326 dbSNP
rs148481795 1332 dbSNP
rs1485238235 1333 dbSNP
rs1207522497 1335 dbSNP
rs1293463252 1343 dbSNP
rs1243499103 1348 dbSNP
rs1243552812 1350 dbSNP
rs1475419681 1353 dbSNP
rs1270721222 1354 dbSNP
rs1410716043 1355 dbSNP
rs942994186 1361 dbSNP
rs1328283485 1374 dbSNP
rs1040045710 1377 dbSNP
rs1185429664 1380 dbSNP
rs965021451 1382 dbSNP
rs922879037 1384 dbSNP
rs765225492 1387 dbSNP
rs1165668406 1392 dbSNP
rs1455952018 1406 dbSNP
rs11540534 1408 dbSNP
rs1174861907 1414 dbSNP
rs1423161045 1423 dbSNP
rs1413461223 1438 dbSNP
rs1169010113 1450 dbSNP
rs1375178704 1453 dbSNP
rs1042318287 1459 dbSNP
rs903312783 1469 dbSNP
rs925780812 1473 dbSNP
rs936091532 1474 dbSNP
rs1413146258 1475 dbSNP
rs1054515505 1483 dbSNP
rs935702314 1485 dbSNP
rs1219737876 1487 dbSNP
rs1320471248 1488 dbSNP
rs894484774 1490 dbSNP
rs1419764397 1493 dbSNP
rs1012893737 1505 dbSNP
rs913010111 1511 dbSNP
rs1218132666 1515 dbSNP
rs1346184064 1517 dbSNP
rs145260229 1522 dbSNP
rs907160575 1532 dbSNP
rs1295466324 1533 dbSNP
rs376609341 1534 dbSNP
rs1236348120 1561 dbSNP
rs898674835 1568 dbSNP
rs1430722641 1570 dbSNP
rs1480492087 1570 dbSNP
rs1196845485 1572 dbSNP
rs553989807 1573 dbSNP
rs1026566738 1579 dbSNP
rs7475 1581 dbSNP
rs1206429301 1582 dbSNP
rs1217267124 1585 dbSNP
rs1376682303 1587 dbSNP
rs185045219 1595 dbSNP
rs1204164863 1602 dbSNP
rs191073936 1603 dbSNP
rs1285195138 1605 dbSNP
rs964445821 1607 dbSNP
rs975781091 1608 dbSNP
rs372747045 1611 dbSNP
rs1245635087 1612 dbSNP
rs531806215 1613 dbSNP
rs756401973 1615 dbSNP
rs1470552342 1634 dbSNP
rs1395025823 1637 dbSNP
rs1477207486 1638 dbSNP
rs1408940316 1639 dbSNP
rs977667895 1641 dbSNP
rs1173712652 1652 dbSNP
rs758310149 1652 dbSNP
rs1032816876 1659 dbSNP
rs957174292 1669 dbSNP
rs565823771 1672 dbSNP
rs988673618 1673 dbSNP
rs924786903 1674 dbSNP
rs912978702 1675 dbSNP
rs1184134960 1676 dbSNP
rs1409233298 1687 dbSNP
rs777127629 1707 dbSNP
rs936159127 1738 dbSNP
rs1318820959 1742 dbSNP
rs749758816 1743 dbSNP
rs1311639104 1749 dbSNP
rs561805126 1750 dbSNP
rs949820910 1751 dbSNP
rs981094746 1751 dbSNP
rs183167479 1754 dbSNP
rs1396724338 1762 dbSNP
rs1441751084 1763 dbSNP
rs187116646 1768 dbSNP
rs147610981 1769 dbSNP
rs1330447753 1773 dbSNP
rs1385691297 1774 dbSNP
rs1301576269 1775 dbSNP
rs1465132263 1781 dbSNP
rs564963458 1785 dbSNP
rs1441469886 1808 dbSNP
rs1160861025 1810 dbSNP
rs1231054797 1849 dbSNP
rs1039046430 1857 dbSNP
rs1045746472 1859 dbSNP
rs1446206723 1864 dbSNP
rs930129536 1864 dbSNP
rs569347617 1877 dbSNP
rs891208022 1882 dbSNP
rs1008731751 1887 dbSNP
rs551980428 1890 dbSNP
rs993838065 1901 dbSNP
rs1351850596 1906 dbSNP
rs1336226884 1912 dbSNP
rs1361994168 1914 dbSNP
rs749010166 1927 dbSNP
rs899844106 1930 dbSNP
rs1026209599 1931 dbSNP
rs1000897908 1933 dbSNP
rs1290190644 1934 dbSNP
rs567202471 1939 dbSNP
rs1006083997 1940 dbSNP
rs957308078 1956 dbSNP
rs754290726 1960 dbSNP
rs1010071320 1964 dbSNP
rs1429115723 1967 dbSNP
rs62131967 1967 dbSNP
rs377149867 1971 dbSNP
rs971104704 1977 dbSNP
rs1487329186 1982 dbSNP
rs975791046 1988 dbSNP
rs1262775132 1991 dbSNP
rs140470071 1997 dbSNP
rs1490947840 2005 dbSNP
rs567663059 2008 dbSNP
rs1263980383 2021 dbSNP
rs966338222 2026 dbSNP
rs1244515399 2027 dbSNP
rs552036216 2029 dbSNP
rs779572796 2030 dbSNP
rs1216299673 2050 dbSNP
rs926957301 2063 dbSNP
rs1303393577 2065 dbSNP
rs570533300 2070 dbSNP
rs958595172 2071 dbSNP
rs973793443 2072 dbSNP
rs866918804 2096 dbSNP
rs191452050 2101 dbSNP
rs1462223885 2102 dbSNP
rs1462282201 2106 dbSNP
rs978095255 2109 dbSNP
rs920168068 2111 dbSNP
rs1168395051 2126 dbSNP
rs1388730438 2129 dbSNP
rs71744544 2130 dbSNP
rs796270561 2130 dbSNP
rs930265176 2131 dbSNP
rs1384976434 2144 dbSNP
rs549911322 2145 dbSNP
rs1047177488 2149 dbSNP
rs1336080365 2158 dbSNP
rs1409007586 2167 dbSNP
rs1128524 2170 dbSNP
rs571388403 2171 dbSNP
rs1316752979 2176 dbSNP
rs747609364 2177 dbSNP
rs144330188 2183 dbSNP
rs1233573273 2196 dbSNP
rs553567015 2197 dbSNP
rs544502840 2200 dbSNP
rs1353679388 2203 dbSNP
rs948806754 2214 dbSNP
rs1300125720 2217 dbSNP
rs536306584 2220 dbSNP
rs1274338387 2229 dbSNP
rs868234061 2240 dbSNP
rs534475700 2241 dbSNP
rs1180464258 2249 dbSNP
rs1053826317 2259 dbSNP
rs1260128759 2265 dbSNP
rs151156817 2268 dbSNP
rs1475646636 2276 dbSNP
rs893021115 2284 dbSNP
rs1010167811 2288 dbSNP
rs1020103936 2296 dbSNP
rs777463462 2306 dbSNP
rs1177154980 2309 dbSNP
rs971238944 2313 dbSNP
rs372628785 2314 dbSNP
rs377096929 2315 dbSNP
rs1342204203 2319 dbSNP
rs929349351 2340 dbSNP
rs1169523322 2353 dbSNP
rs745667021 2359 dbSNP
rs1239248197 2361 dbSNP
rs746617694 2365 dbSNP
rs1337320631 2369 dbSNP
rs887735878 2371 dbSNP
rs140101008 2376 dbSNP
rs1383503420 2380 dbSNP
rs1038889346 2384 dbSNP
rs900303313 2393 dbSNP
rs1429105636 2397 dbSNP
rs1400097042 2409 dbSNP
rs1305925580 2417 dbSNP
rs543438668 2421 dbSNP
rs770673443 2424 dbSNP
rs564998341 2426 dbSNP
rs115003771 2427 dbSNP
rs73920363 2444 dbSNP
rs1439435750 2445 dbSNP
rs1311594794 2448 dbSNP
rs560757095 2449 dbSNP
rs1244325005 2450 dbSNP
rs1228979121 2456 dbSNP
rs527843067 2464 dbSNP
rs1190158871 2472 dbSNP
rs1270335686 2472 dbSNP
rs771849499 2473 dbSNP
rs1205205126 2478 dbSNP
rs1352471455 2486 dbSNP
rs966430689 2487 dbSNP
rs944191646 2488 dbSNP
rs975643218 2489 dbSNP
rs1282875595 2491 dbSNP
rs921346188 2499 dbSNP
rs549693266 2501 dbSNP
rs561423751 2503 dbSNP
rs1333659112 2511 dbSNP
rs555047070 2514 dbSNP
rs1362732557 2515 dbSNP
rs1296536430 2519 dbSNP
rs759379463 2525 dbSNP
rs183365637 2526 dbSNP
rs1053755717 2530 dbSNP
rs1472136865 2531 dbSNP
rs1368390025 2537 dbSNP
rs1032414198 2540 dbSNP
rs1193991059 2542 dbSNP
rs1260632948 2547 dbSNP
rs1372637498 2550 dbSNP
rs769662917 2557 dbSNP
rs1291845126 2564 dbSNP
rs13644 2568 dbSNP
rs553145184 2574 dbSNP
rs571273360 2579 dbSNP
rs775461693 2587 dbSNP
rs892485262 2589 dbSNP
rs1355613138 2591 dbSNP
rs990765909 2606 dbSNP
rs916084565 2609 dbSNP
rs945924941 2614 dbSNP
rs1041640364 2616 dbSNP
rs1399556243 2618 dbSNP
rs1366426918 2626 dbSNP
rs1376992598 2630 dbSNP
rs1435113456 2635 dbSNP
rs970179068 2636 dbSNP
rs1403934550 2637 dbSNP
rs1390699548 2644 dbSNP
rs1301830810 2651 dbSNP
rs1420761299 2652 dbSNP
rs907144830 2652 dbSNP
rs981558885 2659 dbSNP
rs1192489120 2662 dbSNP
rs1480592247 2665 dbSNP
rs1248071132 2668 dbSNP
rs1219155206 2673 dbSNP
rs187807800 2687 dbSNP
rs929376014 2690 dbSNP
rs547440542 2695 dbSNP
rs1320095331 2697 dbSNP
rs1276460643 2699 dbSNP
rs1218081970 2704 dbSNP
rs1368637757 2710 dbSNP
rs1276801606 2711 dbSNP
rs909167472 2717 dbSNP
rs941965242 2738 dbSNP
rs894175383 2739 dbSNP
rs1038941712 2747 dbSNP
rs1330163549 2747 dbSNP
rs1169398937 2748 dbSNP
rs191475264 2756 dbSNP
rs1026580028 2758 dbSNP
rs1189047772 2760 dbSNP
rs997374638 2761 dbSNP
rs982435384 2766 dbSNP
rs1019817141 2772 dbSNP
rs1456436469 2775 dbSNP
rs1257325497 2777 dbSNP
rs1198136478 2789 dbSNP
rs1312809832 2792 dbSNP
rs1281026226 2795 dbSNP
rs965698103 2798 dbSNP
rs1344757077 2802 dbSNP
rs1051582181 2803 dbSNP
rs902292684 2809 dbSNP
rs536047722 2810 dbSNP
rs554895643 2813 dbSNP
rs761843288 2819 dbSNP
rs1360329972 2823 dbSNP
rs989585008 2828 dbSNP
rs1011794553 2829 dbSNP
rs566525171 2832 dbSNP
rs568331241 2835 dbSNP
rs537075742 2837 dbSNP
rs1437559689 2842 dbSNP
rs945347996 2853 dbSNP
rs970273851 2854 dbSNP
rs1186528151 2855 dbSNP
rs1396818716 2856 dbSNP
rs558599445 2862 dbSNP
rs932270011 2866 dbSNP
rs928807388 2867 dbSNP
rs1208106309 2873 dbSNP
rs1311878196 2880 dbSNP
rs1175073400 2887 dbSNP
rs1247699223 2890 dbSNP
rs1375766804 2905 dbSNP
rs1351900967 2907 dbSNP
rs1454996348 2910 dbSNP
rs1056000722 2916 dbSNP
rs34383943 2916 dbSNP
rs576878892 2918 dbSNP
rs1432280702 2922 dbSNP
rs950833682 2926 dbSNP
rs541128992 2928 dbSNP
rs1372361730 2931 dbSNP
rs1417660350 2937 dbSNP
rs1379394199 2939 dbSNP
rs1164137175 2941 dbSNP
rs1425556833 2954 dbSNP
rs750568505 2955 dbSNP
rs1411518626 2957 dbSNP
rs1180231866 2963 dbSNP
rs182468105 2966 dbSNP
rs559177312 2967 dbSNP
rs1264197723 2968 dbSNP
rs145432900 2975 dbSNP
rs909228375 2984 dbSNP
rs760797481 2989 dbSNP
rs1222750522 2993 dbSNP
rs141402328 2996 dbSNP
rs921873576 2999 dbSNP
rs1026673356 3002 dbSNP
rs1227278712 3002 dbSNP
rs1267753336 3003 dbSNP
rs1279715397 3004 dbSNP
rs1397676480 3009 dbSNP
rs933216419 3021 dbSNP
rs1327079643 3034 dbSNP
rs1051635801 3040 dbSNP
rs1215629575 3041 dbSNP
rs186685919 3042 dbSNP
rs1003832380 3050 dbSNP
rs1424336913 3051 dbSNP
rs531898958 3058 dbSNP
rs1264955878 3060 dbSNP
rs1019280871 3061 dbSNP
rs1210857696 3063 dbSNP
rs115465829 3066 dbSNP
rs1410782284 3069 dbSNP
rs1053915878 3074 dbSNP
rs564940672 3075 dbSNP
rs1011899223 3077 dbSNP
rs192618808 3079 dbSNP
rs1259505341 3090 dbSNP
rs1028887563 3093 dbSNP
rs958216590 3099 dbSNP
rs547909075 3104 dbSNP
rs755412764 3113 dbSNP
rs566036888 3116 dbSNP
rs529926570 3117 dbSNP
rs1292311189 3123 dbSNP
rs1466134077 3131 dbSNP
rs1402347283 3139 dbSNP
rs1172966579 3141 dbSNP
rs567423179 3142 dbSNP
rs1372754664 3144 dbSNP
rs1199795782 3145 dbSNP
rs1435294721 3147 dbSNP
rs765796704 3151 dbSNP
rs1458652645 3166 dbSNP
rs1240549481 3167 dbSNP
rs1288189997 3201 dbSNP
rs1348843552 3206 dbSNP
rs1035871502 3209 dbSNP
rs1316691983 3210 dbSNP
rs1234878543 3221 dbSNP
rs1310065709 3223 dbSNP
rs1300397329 3226 dbSNP
rs1447215119 3227 dbSNP
rs950919615 3228 dbSNP
rs1055732895 3248 dbSNP
rs575748590 3249 dbSNP
rs1395796356 3250 dbSNP
rs1321229446 3255 dbSNP
rs931134817 3261 dbSNP
rs1048256212 3262 dbSNP
rs1235121344 3262 dbSNP
rs372072801 3270 dbSNP
rs1376117124 3271 dbSNP
rs1173461823 3273 dbSNP
rs1440670064 3278 dbSNP
rs886820026 3281 dbSNP
rs1177250630 3286 dbSNP
rs1003927357 3287 dbSNP
rs1263625982 3290 dbSNP
rs569795873 3292 dbSNP
rs1041081449 3296 dbSNP
rs185414912 3301 dbSNP
rs3190 3311 dbSNP
rs1240635834 3314 dbSNP
rs963482449 3315 dbSNP
rs974774462 3317 dbSNP
rs190321086 3323 dbSNP
rs933226192 3325 dbSNP
rs1340989415 3331 dbSNP
rs1189681924 3333 dbSNP
rs192809947 3338 dbSNP
rs1397838327 3339 dbSNP
rs1400385377 3342 dbSNP
rs534600033 3366 dbSNP
rs893328040 3367 dbSNP
rs553063332 3369 dbSNP
rs145126154 3373 dbSNP
rs184920604 3375 dbSNP
rs1021134341 3378 dbSNP
rs1470121753 3386 dbSNP
rs935134284 3391 dbSNP
rs1241338872 3392 dbSNP
rs1369526583 3393 dbSNP
rs1189061851 3399 dbSNP
rs576329788 3400 dbSNP
rs982229210 3400 dbSNP
rs893583556 3429 dbSNP
rs1163204608 3435 dbSNP
rs12617431 3443 dbSNP
rs947805319 3445 dbSNP
rs1489153206 3446 dbSNP
rs1356780092 3447 dbSNP
rs540444576 3448 dbSNP
rs1431011219 3450 dbSNP
rs1283708824 3461 dbSNP
rs780911707 3470 dbSNP
rs561973915 3475 dbSNP
rs991256595 3479 dbSNP
rs375415195 3484 dbSNP
rs1036329573 3491 dbSNP
rs1292909697 3493 dbSNP
rs753311219 3494 dbSNP
rs886674823 3504 dbSNP
rs1005490502 3509 dbSNP
rs1362677790 3510 dbSNP
rs745602169 3515 dbSNP
rs1400455513 3521 dbSNP
rs1048182797 3529 dbSNP
rs963493983 3534 dbSNP
rs908397915 3536 dbSNP
rs1416443173 3538 dbSNP
rs1378453519 3539 dbSNP
rs974782964 3541 dbSNP
rs1260563453 3547 dbSNP
rs767983778 3548 dbSNP
rs115172720 3550 dbSNP
rs954662174 3554 dbSNP
rs900950024 3555 dbSNP
rs543716895 3562 dbSNP
rs148245232 3565 dbSNP
rs1207918873 3572 dbSNP
rs565227723 3574 dbSNP
rs1049897861 3575 dbSNP
rs894020548 3576 dbSNP
rs1272686149 3599 dbSNP
rs1011169494 3600 dbSNP
rs1021103345 3611 dbSNP
rs987422232 3619 dbSNP
rs1276491895 3623 dbSNP
rs1430489180 3630 dbSNP
rs1331985254 3635 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5500.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguucucuacaaccGGGAUUg 5'
                        |||||| 
Target 5' cuucuaauuuuuuuCCCUAAa 3'
 		7 - 27
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000395366.2 | 3UTR | CAAAUACUUCUAAUUUUUUUCCCUAAACAUUUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
33 hsa-miR-2909 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT254788 XRCC6 X-ray repair cross complementing 6 2 4
MIRT464426 UHMK1 U2AF homology motif kinase 1 2 2
MIRT478185 DDX6 DEAD-box helicase 6 2 6
MIRT481768 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT489915 RTKN rhotekin 2 2
MIRT500566 VPS4A vacuolar protein sorting 4 homolog A 2 8
MIRT510700 SREK1IP1 SREK1 interacting protein 1 2 6
MIRT513331 CDK2 cyclin dependent kinase 2 2 4
MIRT524310 CTC1 CST telomere replication complex component 1 2 4
MIRT533571 TOMM40L translocase of outer mitochondrial membrane 40 like 2 2
MIRT537784 EIF4E3 eukaryotic translation initiation factor 4E family member 3 2 2
MIRT540489 ZMAT4 zinc finger matrin-type 4 2 8
MIRT547020 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT549561 C19orf12 chromosome 19 open reading frame 12 2 2
MIRT557346 HBP1 HMG-box transcription factor 1 2 4
MIRT564692 ZNF322P1 zinc finger protein 322 pseudogene 1 2 2
MIRT570167 LIPG lipase G, endothelial type 2 2
MIRT621677 UBE2QL1 ubiquitin conjugating enzyme E2 Q family like 1 2 2
MIRT629121 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 4
MIRT633745 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2 2
MIRT634178 TXNDC16 thioredoxin domain containing 16 2 2
MIRT646387 SLC22A6 solute carrier family 22 member 6 2 2
MIRT651181 ZNF281 zinc finger protein 281 2 2
MIRT651892 UFD1L ubiquitin recognition factor in ER associated degradation 1 2 2
MIRT675180 KIF1C kinesin family member 1C 2 2
MIRT682670 CPM carboxypeptidase M 2 2
MIRT685990 NEK4 NIMA related kinase 4 2 2
MIRT698850 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT699396 SLC2A1 solute carrier family 2 member 1 2 2
MIRT723260 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 2
MIRT725320 NFASC neurofascin 2 2
MIRT734596 CD276 CD276 molecule 2 0
MIRT734938 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-2909 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2909 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

Error report submission