pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NR1D2   
Synonyms BD73, EAR-1R, RVR
Description nuclear receptor subfamily 1 group D member 2
Transcript NM_001145425   
Other Transcripts NM_005126   
Expression
Putative miRNA Targets on NR1D2
3'UTR of NR1D2
(miRNA target sites are highlighted)
>NR1D2|NM_001145425|3'UTR
   1 GGCCTTTGTTTATTTAAACATGAACTGATGGTAACTGTACATTTTGTGCTAAAATGCATATTTATATGTGTATACCATAT
  81 GTGGAGATAGAAAAGACCTTTAAGACAATAAAAGATTGTAGGCTATCTCTGTAATCATGCAATAGCTGTTCGGATTGAGA
 161 ACTCTTCAGCCATGATTAGACGTTGACTGCATCTCCCTGATAGACCAATCAGCTGTGTCGCACTTAAACTGGAGAAGTTA
 241 CACTGAAGTATAATCACACTGAATGTTAGACTTTTTCATCTGCCAAAACCAAAAACCATTTTGATCTCCCTGTGGTTATC
 321 AATATAACGCACAATCACAAGTGTATGAGGACTTAGAAATTAATCCTTTGTGGTAGGAGTTCTGTTGAATGATGGAAATC
 401 TTATTACTACCACAAGACTATTTGATCTGGTAATTGGAGACTTCGGGATTTAGGAGATCTCCATGTCTGTATTTACTCTA
 481 CCACTGCTAAAGTGTGTGGTCCTGGGTAGTTTACTTGCTTGCGGAAAATGAGAATTGATGGTGTCCCCAATGCCCCACCT
 561 CACAGAGTTACTAAAAAATGTCTGTAAAGCATATTTACCTCTTGGGAGATAGGCACTATGTAAATAAGGTAAAATTTCTG
 641 TTATTACAATTATTCATAATAATATTCTTTTCTTATTTCTAAGCCTTTCTGGGAAATCATTTCAGTCCACACCAACCATA
 721 TTATTCAGGGTTCCTGCCATATGTGTGGGGTATCCTACTGATACACACGTATTCAAAGTTTATGGGTACAACAAAGACAT
 801 AGTACATGTACATAATATGTATGTGAATATAGTTAAATATATTTCTTCACAATATTTTAAACTGTGAAGAACTTTATCAT
 881 ACAGGAAACTTAAAACAAGAGGTGTCAAAAGACCCAAATTAGGTGCATTTTACTTGTTTATGATGGCATAACCATTGCTT
 961 TAAAATGTTTAGACAGTAGAATATTGAATTTATGCTCTATTTTTGTTTATTTAAGCAACACTTAATGTAAAAGTGCAACA
1041 GGCAATTGAATCCAAATTTCAACGACAAAAAAAAAAAACATGTATTTTAGAGTTCATCTTTGGCAAAATCTTTGGTTCAG
1121 GGTACTAGTTGTTTAAAAGTTGATTCATATTCTTACCTTGTGCTGAGAAAGGTTGCATTGCTGCCCCTTATACACATGCT
1201 GCAGCTTGATGTTAAAGAATTTTTATTCTTTCTGAAGAACTAATTAATGTTTAAAGCAACTGTTTAATATGATGGCATGT
1281 GTGTGTGTGCGTGCGTGTGTATGTTCTGAGTCCACTTCTTTTTTCCTAAATAACACTACAGGGATTTTGTCATATTAGAT
1361 TTAATTTATAATTTGAAAAATCATCTAGTGTGTGACCTACAGGCTTAGAAATGGTATAGTCAAAGACATTTTATCCACAT
1441 TTCTAATAGTGGACTTGATTAAGTAGATAAGATCAGCATCTGTTTATGGTAGTAGGAGAAATAGCCAAAGTTGAGGATTT
1521 TATGTATGTTTTCCTGTTTACCTGGAAAATAGCAATTAATTGGATTTTTTGGTAAAGATTGCCTTCTGTATAATGTTTGG
1601 ATTATATAAAATTGCAAAAATGATAACAGCCCGCTTTACTGTACTAAGCCTGTTACTTTCATGACGTGTGAGCAGAATGC
1681 CTTATTTTGTAATCTTGTTTAACTTGTTGCTACTGGGACTTGATTTACTGTGGCACTAGTTAAGTAAGTTAAAAAAAAGT
1761 TAAACCCTCTCATTATTAAAGAGGAAAGGCGATGGTGATGTCTGTAGTACAATATAAACCATAATTGTGATTTACCTTAA
1841 GTAGGTATAACTCTTATGGGATATACAGTATAGTTTTTGTGAATCTTTACATGATAGCATTATCTTTTTATAATTTTTTT
1921 TCCTAAGATAAACAAATGCATAGTTTTCTTCTATGGGTGATAGAAACAGCTTTTTGAAGTAATGAAAACCTCAAAAGATC
2001 ATGTTGATTCTTAATTTTTGCCTTTTGCATAAGCCTCTTTATAACATGTATCTTTAAAACAATTAAGTCTTTAGGAATGT
2081 GTAACCAGAACTATGTTAGTATTGCTTATAAAACTTTAGTTAGGTTCAATATATACATATATACATCTCTATATAGGTAT
2161 ATAGATTTGCATTTTGTCTTGTAAAATTTTATTTGAATAAATTCTTCCTGTAGGTAATGGGAAACAAAATTAATAGTTCA
2241 TATGTCACTCATAGCATTTCTATATTTGAAAGTAGCCCAATATAAAACTTTTGATTCTAAAATTAAACCAGCAGCCTATT
2321 ACAAGCACATTCTTTGATTGAGTCATTGGTTATAAACTTACTAAATGCAGAGAAAGCAGCCAATTTAGGAAACTTCTGAG
2401 TTGGTGGGACACTGTTGATTAATAATGTACTGTATGAATTAAGTGATGCTTTAACTTTGATTTTACATTTTAAAGTTAAA
2481 ATGTGGGCATTATGTCAGCAAACTTAAGGGCATTATGTCAGCAAGCTAAAACATTTTTTTTCCTGTGCTTTTAATGTATC
2561 TCTTTACATGATCTGAGAGAGGATTCAAGTTGATAGAAATAGCTGAGGGGAAAAGGGGGAACATCTTGGGATGAAGCTTG
2641 TCCTTATGGTGATGGTTTAATTACAGATTAAAAAATTAGAAGGAAATTTCAGTGGATTAAGTGTATAGCTTTCATATCTA
2721 CATTTCAAGAAATTACCATTGTAACTTGATAAGAGATGATTTATTTTATGTAAACATCTTTGCAAAGCAAGGTGTAGCAG
2801 CTCAGCTAGATTTATTACTGTGCACGAAAGTAAATACCTATCTCAATTATTCTTTTTCTTTTCCAATATAAAGTTTGCTG
2881 AATGTACAAGAAGAGTTTATCACTTAGGATATAGAATTTTTTTAGGGGTTGGGGGAGGGGATCTGTTAGGAAACTGTTAC
2961 CTATAAACAAAGATTGACTGGATTCGATCCAAAAGATAAAACTTGAAGCTATTCTGGAACTAACATGGAAAAATGAAATG
3041 GCTATTGTTTAAAAAAATGATAGAAATACATTGTTGATGGGATATGAGTTAAGTTTATTTTCTACAAACTGTAATTGATG
3121 AGGACATGGATAATATCTTCATGTTTCTGAGAAGTAATCTGTATGTGGGGGGAGGGGATAATAAATATTTCTAACCAACA
3201 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccgaucaccuggucCACUUCa 5'
                          |||||| 
Target 5' cacaatattttaaactGTGAAGa 3'
848 - 870 120.00 -7.70
2
miRNA  3' ugccgaUCACCU---GGUCCACUUCa 5'
                | ||||   :: ||| ||| 
Target 5' caattaATTGGATTTTTTGGTAAAGa 3'
1553 - 1578 117.00 -8.50
3
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            ||  ||  ||:  ||||| | 
Target 5' gaGGAAAGGCGAT--GGTGATGt 3'
1781 - 1801 117.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30115913 87 COSMIC
COSN30153843 87 COSMIC
COSN26438691 97 COSMIC
COSN31605610 106 COSMIC
COSN6573859 166 COSMIC
COSN17132072 221 COSMIC
COSN21974472 233 COSMIC
COSN30526630 249 COSMIC
COSN16396033 253 COSMIC
COSN5533145 399 COSMIC
COSN31962036 559 COSMIC
COSN18998961 645 COSMIC
COSN21055921 711 COSMIC
COSN17470517 992 COSMIC
COSN20098218 1079 COSMIC
COSN27367124 1079 COSMIC
COSN25145773 1164 COSMIC
COSN25523426 1279 COSMIC
COSN20090777 1291 COSMIC
COSN5043105 2053 COSMIC
COSN20252983 2073 COSMIC
COSN8924092 2205 COSMIC
COSN23414892 2894 COSMIC
COSN21364647 3090 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1428255250 2 dbSNP
rs761991177 3 dbSNP
rs370800749 4 dbSNP
rs199724685 5 dbSNP
rs1424242842 9 dbSNP
rs780967231 10 dbSNP
rs752600291 12 dbSNP
rs755844630 20 dbSNP
rs1483138022 21 dbSNP
rs1408758752 23 dbSNP
rs777810436 26 dbSNP
rs201841751 28 dbSNP
rs1202067287 32 dbSNP
rs1336956042 36 dbSNP
rs770590148 39 dbSNP
rs778509259 46 dbSNP
rs1010288339 48 dbSNP
rs116793159 52 dbSNP
rs1013945636 57 dbSNP
rs1225117014 58 dbSNP
rs1417569013 59 dbSNP
rs1343496655 69 dbSNP
rs968854408 70 dbSNP
rs1023050586 73 dbSNP
rs921422233 77 dbSNP
rs970033906 79 dbSNP
rs979094365 82 dbSNP
rs1311048854 89 dbSNP
rs1178614289 93 dbSNP
rs1358061732 103 dbSNP
rs34096691 105 dbSNP
rs925832101 109 dbSNP
rs1448209734 111 dbSNP
rs986967058 118 dbSNP
rs955889782 126 dbSNP
rs988573561 128 dbSNP
rs546255893 135 dbSNP
rs539336507 138 dbSNP
rs534456639 139 dbSNP
rs760768533 139 dbSNP
rs554176425 143 dbSNP
rs1239006012 144 dbSNP
rs879601752 144 dbSNP
rs1308935029 148 dbSNP
rs572331871 152 dbSNP
rs1172916108 164 dbSNP
rs183715156 165 dbSNP
rs1262398759 166 dbSNP
rs1228981019 175 dbSNP
rs186941880 182 dbSNP
rs1390908544 185 dbSNP
rs1380146527 186 dbSNP
rs191415159 190 dbSNP
rs1278895375 192 dbSNP
rs1405876815 194 dbSNP
rs941333627 201 dbSNP
rs1442353883 204 dbSNP
rs776514555 209 dbSNP
rs182635303 211 dbSNP
rs897383365 220 dbSNP
rs1239305599 221 dbSNP
rs1037424045 224 dbSNP
rs1256411275 236 dbSNP
rs919969230 237 dbSNP
rs1479755861 242 dbSNP
rs994367640 244 dbSNP
rs1209154988 248 dbSNP
rs1352682359 254 dbSNP
rs140874702 260 dbSNP
rs576775984 264 dbSNP
rs1218311371 277 dbSNP
rs1044498957 278 dbSNP
rs540958582 281 dbSNP
rs1441380083 286 dbSNP
rs1322451167 293 dbSNP
rs1317404067 298 dbSNP
rs559335670 299 dbSNP
rs1056628911 308 dbSNP
rs895606050 312 dbSNP
rs1424298444 316 dbSNP
rs905959985 323 dbSNP
rs1177546807 325 dbSNP
rs1352293837 327 dbSNP
rs558308043 329 dbSNP
rs1288861342 330 dbSNP
rs1452390940 335 dbSNP
rs1022677999 338 dbSNP
rs970129735 342 dbSNP
rs999792813 352 dbSNP
rs1384241093 353 dbSNP
rs1056909034 354 dbSNP
rs568745561 356 dbSNP
rs1032902851 371 dbSNP
rs529636162 376 dbSNP
rs1331691464 389 dbSNP
rs1259537504 390 dbSNP
rs1204541239 395 dbSNP
rs891682881 405 dbSNP
rs1293995827 407 dbSNP
rs1010176581 408 dbSNP
rs1358920357 411 dbSNP
rs4602333 418 dbSNP
rs1230060397 420 dbSNP
rs375755717 421 dbSNP
rs1449372960 428 dbSNP
rs1387807877 431 dbSNP
rs563380720 434 dbSNP
rs922435158 445 dbSNP
rs774882048 446 dbSNP
rs985953430 449 dbSNP
rs995921589 452 dbSNP
rs911288659 461 dbSNP
rs941372612 464 dbSNP
rs530572713 472 dbSNP
rs367956899 474 dbSNP
rs554053409 474 dbSNP
rs1480685827 476 dbSNP
rs954450604 477 dbSNP
rs1198242092 479 dbSNP
rs1239093135 483 dbSNP
rs1038367258 496 dbSNP
rs751481985 497 dbSNP
rs1191456016 500 dbSNP
rs1275579471 504 dbSNP
rs961918337 505 dbSNP
rs1245936178 509 dbSNP
rs930209256 513 dbSNP
rs550442662 518 dbSNP
rs571857635 519 dbSNP
rs746323705 523 dbSNP
rs1234425016 524 dbSNP
rs1174288296 525 dbSNP
rs1347927227 530 dbSNP
rs1282008109 536 dbSNP
rs896654731 540 dbSNP
rs865906684 548 dbSNP
rs1464708121 551 dbSNP
rs1328976417 555 dbSNP
rs1044555705 557 dbSNP
rs144793932 559 dbSNP
rs1167051032 560 dbSNP
rs547747747 562 dbSNP
rs1470174847 564 dbSNP
rs1431340455 565 dbSNP
rs1044384127 568 dbSNP
rs1480136261 578 dbSNP
rs905582059 583 dbSNP
rs1459565498 597 dbSNP
rs1436226107 599 dbSNP
rs927353600 607 dbSNP
rs1204707056 608 dbSNP
rs938786185 630 dbSNP
rs1261793235 632 dbSNP
rs999845244 633 dbSNP
rs1321939933 635 dbSNP
rs1330924333 638 dbSNP
rs566332560 641 dbSNP
rs891749864 644 dbSNP
rs1443761015 645 dbSNP
rs1333604427 648 dbSNP
rs1327844504 650 dbSNP
rs1453056743 653 dbSNP
rs1408086553 656 dbSNP
rs1277180512 657 dbSNP
rs138639511 658 dbSNP
rs945946589 659 dbSNP
rs1218023381 660 dbSNP
rs1303682796 662 dbSNP
rs1160314622 663 dbSNP
rs1468730514 663 dbSNP
rs1232487216 664 dbSNP
rs1258813208 665 dbSNP
rs1184494783 666 dbSNP
rs1043016155 667 dbSNP
rs772714123 668 dbSNP
rs1203441440 673 dbSNP
rs1029543846 684 dbSNP
rs1287031936 686 dbSNP
rs767265395 704 dbSNP
rs1288843591 705 dbSNP
rs1278565607 716 dbSNP
rs985284144 719 dbSNP
rs554505097 732 dbSNP
rs1185093580 733 dbSNP
rs576133114 737 dbSNP
rs1384582296 739 dbSNP
rs962809022 740 dbSNP
rs1451664088 741 dbSNP
rs1345700297 749 dbSNP
rs1320253719 750 dbSNP
rs974109564 755 dbSNP
rs1407289459 758 dbSNP
rs1200909349 765 dbSNP
rs752571968 769 dbSNP
rs566116119 770 dbSNP
rs186612418 771 dbSNP
rs576614238 772 dbSNP
rs1214336725 776 dbSNP
rs1446950400 779 dbSNP
rs992412397 782 dbSNP
rs1020195442 784 dbSNP
rs918151093 786 dbSNP
rs948232213 787 dbSNP
rs1474002367 789 dbSNP
rs1361079687 791 dbSNP
rs559764503 794 dbSNP
rs1045221168 795 dbSNP
rs973314570 799 dbSNP
rs1362457549 800 dbSNP
rs1271740670 806 dbSNP
rs1428506454 807 dbSNP
rs905630463 809 dbSNP
rs559411058 810 dbSNP
rs1303778802 813 dbSNP
rs1426693314 824 dbSNP
rs1363943960 828 dbSNP
rs1163218748 829 dbSNP
rs574634547 830 dbSNP
rs1422031894 838 dbSNP
rs1325951763 839 dbSNP
rs541462660 840 dbSNP
rs1475334780 841 dbSNP
rs1027204815 842 dbSNP
rs1199491881 846 dbSNP
rs1490716393 848 dbSNP
rs952979856 862 dbSNP
rs980050551 865 dbSNP
rs1399957893 870 dbSNP
rs956383803 871 dbSNP
rs1274776256 875 dbSNP
rs1212605316 887 dbSNP
rs927319392 892 dbSNP
rs1054101153 897 dbSNP
rs938754711 897 dbSNP
rs992961082 897 dbSNP
rs1293036731 899 dbSNP
rs753223211 901 dbSNP
rs1242854372 902 dbSNP
rs1283892836 903 dbSNP
rs1409810506 910 dbSNP
rs1430603355 910 dbSNP
rs1009836061 915 dbSNP
rs1479755635 916 dbSNP
rs1357325196 919 dbSNP
rs756824887 926 dbSNP
rs1030007766 927 dbSNP
rs904410645 943 dbSNP
rs1480723039 954 dbSNP
rs1234314522 955 dbSNP
rs891033540 962 dbSNP
rs1211352058 968 dbSNP
rs1202181978 971 dbSNP
rs931902624 972 dbSNP
rs1225211805 973 dbSNP
rs1050076951 975 dbSNP
rs1300594436 980 dbSNP
rs890162038 984 dbSNP
rs1392048010 987 dbSNP
rs1375782337 998 dbSNP
rs1007160181 999 dbSNP
rs191349086 1000 dbSNP
rs1264674856 1002 dbSNP
rs1179073486 1005 dbSNP
rs1468639862 1005 dbSNP
rs1009062490 1006 dbSNP
rs778625538 1019 dbSNP
rs1419226150 1022 dbSNP
rs1409670037 1028 dbSNP
rs760659372 1029 dbSNP
rs1457056003 1034 dbSNP
rs1205333524 1038 dbSNP
rs962821702 1038 dbSNP
rs1473584130 1040 dbSNP
rs994319493 1043 dbSNP
rs1239854413 1046 dbSNP
rs1318854701 1051 dbSNP
rs149325067 1053 dbSNP
rs1378889252 1061 dbSNP
rs1419596982 1064 dbSNP
rs1299395085 1065 dbSNP
rs1362524976 1066 dbSNP
rs1290014642 1067 dbSNP
rs1385485889 1067 dbSNP
rs1402117344 1067 dbSNP
rs397789593 1067 dbSNP
rs535843216 1067 dbSNP
rs574035079 1067 dbSNP
rs66705087 1067 dbSNP
rs1025694117 1071 dbSNP
rs1185183466 1077 dbSNP
rs951377568 1078 dbSNP
rs992143092 1079 dbSNP
rs1205695618 1080 dbSNP
rs980349636 1081 dbSNP
rs772746873 1082 dbSNP
rs948310360 1096 dbSNP
rs1247297046 1099 dbSNP
rs981384859 1104 dbSNP
rs1317519603 1107 dbSNP
rs1244202846 1111 dbSNP
rs1340302501 1119 dbSNP
rs1352773914 1120 dbSNP
rs1240762862 1125 dbSNP
rs1288153450 1142 dbSNP
rs11547595 1147 dbSNP
rs1383439216 1148 dbSNP
rs925464386 1150 dbSNP
rs780232557 1151 dbSNP
rs1418623662 1152 dbSNP
rs1365804298 1153 dbSNP
rs1165126485 1158 dbSNP
rs1456177644 1159 dbSNP
rs530664039 1161 dbSNP
rs552283294 1180 dbSNP
rs747412362 1192 dbSNP
rs1430176627 1194 dbSNP
rs534075564 1194 dbSNP
rs1054152968 1195 dbSNP
rs1256275214 1197 dbSNP
rs1490546554 1198 dbSNP
rs993237036 1200 dbSNP
rs1355946007 1208 dbSNP
rs1443748761 1214 dbSNP
rs565503861 1216 dbSNP
rs912957057 1217 dbSNP
rs945746137 1218 dbSNP
rs946133751 1234 dbSNP
rs1278191569 1238 dbSNP
rs1398815039 1239 dbSNP
rs978594101 1241 dbSNP
rs1304452000 1242 dbSNP
rs1384648885 1242 dbSNP
rs925806695 1245 dbSNP
rs1439532695 1247 dbSNP
rs76656162 1250 dbSNP
rs891077260 1260 dbSNP
rs1421355628 1269 dbSNP
rs1169944196 1270 dbSNP
rs1491425264 1277 dbSNP
rs1050375450 1278 dbSNP
rs944354138 1278 dbSNP
rs1172029902 1284 dbSNP
rs1006801270 1286 dbSNP
rs897550301 1289 dbSNP
rs554109552 1291 dbSNP
rs898334509 1292 dbSNP
rs72628110 1295 dbSNP
rs1326286045 1296 dbSNP
rs1025746307 1298 dbSNP
rs951428309 1306 dbSNP
rs567426732 1313 dbSNP
rs1375866616 1316 dbSNP
rs1024970085 1317 dbSNP
rs1392893460 1318 dbSNP
rs183154117 1319 dbSNP
rs970075854 1331 dbSNP
rs148098215 1342 dbSNP
rs1431376405 1345 dbSNP
rs540627942 1350 dbSNP
rs1477780351 1355 dbSNP
rs1364571154 1356 dbSNP
rs1014227070 1361 dbSNP
rs1456629425 1362 dbSNP
rs958213954 1368 dbSNP
rs189078126 1384 dbSNP
rs1232486051 1385 dbSNP
rs1297126002 1397 dbSNP
rs1463038336 1400 dbSNP
rs913007812 1404 dbSNP
rs1277199907 1406 dbSNP
rs1216937774 1409 dbSNP
rs1256044498 1422 dbSNP
rs746923690 1422 dbSNP
rs558604401 1447 dbSNP
rs1240688992 1448 dbSNP
rs1196350915 1450 dbSNP
rs1308190232 1453 dbSNP
rs1453181794 1455 dbSNP
rs73038538 1466 dbSNP
rs1332161657 1470 dbSNP
rs1413957904 1472 dbSNP
rs1385700002 1474 dbSNP
rs1457944047 1475 dbSNP
rs912237839 1491 dbSNP
rs773315843 1492 dbSNP
rs1160401464 1502 dbSNP
rs1179598577 1503 dbSNP
rs1438000785 1509 dbSNP
rs925774102 1512 dbSNP
rs534527181 1513 dbSNP
rs553083938 1516 dbSNP
rs1446863159 1518 dbSNP
rs185259942 1519 dbSNP
rs759433384 1524 dbSNP
rs911785138 1537 dbSNP
rs542097029 1543 dbSNP
rs898385379 1549 dbSNP
rs1378261132 1550 dbSNP
rs1036012435 1560 dbSNP
rs557028209 1562 dbSNP
rs1471033053 1587 dbSNP
rs1168626858 1590 dbSNP
rs918945049 1591 dbSNP
rs1384787325 1593 dbSNP
rs1399762839 1601 dbSNP
rs1282235516 1607 dbSNP
rs995367401 1609 dbSNP
rs1048834994 1613 dbSNP
rs536461560 1615 dbSNP
rs374591479 1618 dbSNP
rs1466360983 1621 dbSNP
rs1333074578 1622 dbSNP
rs944979533 1623 dbSNP
rs555957647 1624 dbSNP
rs1164500995 1630 dbSNP
rs190092330 1633 dbSNP
rs969436306 1634 dbSNP
rs1181640605 1642 dbSNP
rs752379202 1650 dbSNP
rs1244394557 1651 dbSNP
rs1386123475 1655 dbSNP
rs868299660 1655 dbSNP
rs1014942966 1658 dbSNP
rs564183522 1661 dbSNP
rs1332316155 1663 dbSNP
rs1216188380 1664 dbSNP
rs1323178635 1666 dbSNP
rs1256894607 1667 dbSNP
rs1227590219 1670 dbSNP
rs988309293 1675 dbSNP
rs1280059876 1698 dbSNP
rs1318118721 1713 dbSNP
rs914065066 1714 dbSNP
rs1406920638 1726 dbSNP
rs955010057 1734 dbSNP
rs1164509006 1737 dbSNP
rs1000199906 1739 dbSNP
rs1169227920 1741 dbSNP
rs1422236282 1741 dbSNP
rs760525533 1745 dbSNP
rs1253420513 1749 dbSNP
rs1261787410 1749 dbSNP
rs754840807 1751 dbSNP
rs550047278 1754 dbSNP
rs1487741359 1756 dbSNP
rs763864167 1758 dbSNP
rs953457660 1759 dbSNP
rs985940065 1760 dbSNP
rs1481715163 1765 dbSNP
rs1018814673 1772 dbSNP
rs1317224152 1777 dbSNP
rs1283938624 1783 dbSNP
rs1423049629 1783 dbSNP
rs1221068179 1788 dbSNP
rs912274319 1791 dbSNP
rs1293205062 1792 dbSNP
rs528151436 1807 dbSNP
rs368085703 1813 dbSNP
rs541270558 1825 dbSNP
rs965978534 1826 dbSNP
rs975061149 1832 dbSNP
rs919862791 1837 dbSNP
rs1356594081 1838 dbSNP
rs1329769246 1839 dbSNP
rs559897917 1840 dbSNP
rs1172872770 1848 dbSNP
rs972423040 1851 dbSNP
rs530370703 1857 dbSNP
rs1347890494 1864 dbSNP
rs1434439368 1888 dbSNP
rs1422591357 1893 dbSNP
rs1046963103 1898 dbSNP
rs918924672 1905 dbSNP
rs1457277715 1914 dbSNP
rs1480770846 1914 dbSNP
rs372277608 1918 dbSNP
rs949220348 1922 dbSNP
rs1293902066 1926 dbSNP
rs1392731516 1930 dbSNP
rs1046490541 1933 dbSNP
rs1310571377 1934 dbSNP
rs1224504295 1940 dbSNP
rs984427287 1940 dbSNP
rs1379403470 1943 dbSNP
rs1307455586 1945 dbSNP
rs569744290 1954 dbSNP
rs1002235959 1958 dbSNP
rs926346400 1967 dbSNP
rs1305161148 1968 dbSNP
rs530836926 1969 dbSNP
rs1465001806 1974 dbSNP
rs552120393 1983 dbSNP
rs1032303368 1984 dbSNP
rs1356891367 1986 dbSNP
rs1174746200 1987 dbSNP
rs528646308 1995 dbSNP
rs1276982327 2001 dbSNP
rs1419239080 2002 dbSNP
rs937780204 2004 dbSNP
rs112317436 2005 dbSNP
rs1176536435 2008 dbSNP
rs1438900106 2010 dbSNP
rs570859781 2011 dbSNP
rs1243657973 2015 dbSNP
rs141833564 2016 dbSNP
rs1220069491 2022 dbSNP
rs1310218412 2023 dbSNP
rs1482255441 2025 dbSNP
rs896000108 2030 dbSNP
rs1356107883 2035 dbSNP
rs375847872 2038 dbSNP
rs1383925435 2041 dbSNP
rs1021124188 2042 dbSNP
rs1244443023 2046 dbSNP
rs1394729250 2046 dbSNP
rs1379096353 2056 dbSNP
rs1266430944 2057 dbSNP
rs138839200 2061 dbSNP
rs903443815 2063 dbSNP
rs954919667 2069 dbSNP
rs1215139701 2070 dbSNP
rs753516295 2073 dbSNP
rs568229830 2075 dbSNP
rs1368791341 2078 dbSNP
rs191716619 2078 dbSNP
rs184229082 2080 dbSNP
rs1188501526 2082 dbSNP
rs757020814 2092 dbSNP
rs1255457942 2098 dbSNP
rs1187181946 2110 dbSNP
rs1489340275 2115 dbSNP
rs1261152393 2116 dbSNP
rs554132569 2118 dbSNP
rs1488912799 2120 dbSNP
rs576074248 2129 dbSNP
rs1243142564 2130 dbSNP
rs1195882303 2134 dbSNP
rs1386904162 2136 dbSNP
rs575573541 2138 dbSNP
rs188168460 2141 dbSNP
rs752735189 2143 dbSNP
rs964115947 2144 dbSNP
rs1341787616 2146 dbSNP
rs975113307 2148 dbSNP
rs557691118 2150 dbSNP
rs150649077 2151 dbSNP
rs1360595641 2166 dbSNP
rs572900857 2178 dbSNP
rs930930097 2182 dbSNP
rs1456260518 2185 dbSNP
rs1432203233 2190 dbSNP
rs982696275 2191 dbSNP
rs966309923 2192 dbSNP
rs971923828 2194 dbSNP
rs1228566172 2198 dbSNP
rs908428088 2199 dbSNP
rs1208396721 2202 dbSNP
rs778535565 2213 dbSNP
rs1362105309 2218 dbSNP
rs1046642737 2225 dbSNP
rs749974523 2227 dbSNP
rs1275695852 2228 dbSNP
rs758917158 2228 dbSNP
rs1217546404 2231 dbSNP
rs926314000 2234 dbSNP
rs1325163925 2243 dbSNP
rs1384737745 2245 dbSNP
rs780613527 2251 dbSNP
rs1331793482 2261 dbSNP
rs540316186 2263 dbSNP
rs893810820 2264 dbSNP
rs937747613 2265 dbSNP
rs1170051477 2271 dbSNP
rs180892880 2281 dbSNP
rs1379562798 2283 dbSNP
rs1196969864 2286 dbSNP
rs1021175028 2294 dbSNP
rs1244732320 2296 dbSNP
rs558127868 2298 dbSNP
rs1200934215 2304 dbSNP
rs1456815599 2310 dbSNP
rs1258054480 2315 dbSNP
rs879172037 2322 dbSNP
rs1437661539 2325 dbSNP
rs1197425892 2328 dbSNP
rs530294131 2336 dbSNP
rs1041902370 2346 dbSNP
rs541991912 2349 dbSNP
rs1157827625 2353 dbSNP
rs1330162572 2360 dbSNP
rs1018185147 2362 dbSNP
rs777377906 2364 dbSNP
rs963860283 2367 dbSNP
rs1448799952 2373 dbSNP
rs936263392 2378 dbSNP
rs1330644680 2390 dbSNP
rs1054448372 2393 dbSNP
rs1358114975 2402 dbSNP
rs1170902706 2413 dbSNP
rs1465684052 2419 dbSNP
rs781455999 2423 dbSNP
rs1007644808 2427 dbSNP
rs1026693588 2428 dbSNP
rs1444945489 2437 dbSNP
rs952373523 2440 dbSNP
rs901932523 2453 dbSNP
rs1444637410 2454 dbSNP
rs1280055040 2455 dbSNP
rs1198287546 2457 dbSNP
rs1346692984 2463 dbSNP
rs1286331335 2467 dbSNP
rs1309006411 2474 dbSNP
rs1374316206 2484 dbSNP
rs1374636394 2490 dbSNP
rs1308305352 2493 dbSNP
rs1226016757 2497 dbSNP
rs1276563546 2510 dbSNP
rs1332262586 2513 dbSNP
rs1311736541 2514 dbSNP
rs982434263 2520 dbSNP
rs1491519409 2533 dbSNP
rs993706009 2533 dbSNP
rs1379999272 2534 dbSNP
rs34772025 2534 dbSNP
rs951945747 2534 dbSNP
rs908480708 2539 dbSNP
rs971050018 2542 dbSNP
rs563656376 2544 dbSNP
rs1456619765 2559 dbSNP
rs1184734705 2566 dbSNP
rs1177722607 2569 dbSNP
rs1238598276 2579 dbSNP
rs982003137 2587 dbSNP
rs1218293863 2595 dbSNP
rs1351062448 2596 dbSNP
rs1283230675 2611 dbSNP
rs1228734510 2614 dbSNP
rs1471103970 2632 dbSNP
rs1358377439 2634 dbSNP
rs571712314 2648 dbSNP
rs748335806 2649 dbSNP
rs1423844322 2650 dbSNP
rs1033297438 2665 dbSNP
rs937806559 2668 dbSNP
rs531070089 2670 dbSNP
rs1360195909 2673 dbSNP
rs1397606489 2674 dbSNP
rs769929491 2678 dbSNP
rs1324611693 2685 dbSNP
rs1407474890 2687 dbSNP
rs1412230620 2691 dbSNP
rs991847553 2693 dbSNP
rs1464800229 2700 dbSNP
rs1331060024 2701 dbSNP
rs1195233960 2710 dbSNP
rs552198349 2723 dbSNP
rs915297008 2729 dbSNP
rs1221990497 2733 dbSNP
rs1444973288 2739 dbSNP
rs1177036342 2741 dbSNP
rs1287498689 2751 dbSNP
rs1273651017 2752 dbSNP
rs770030157 2759 dbSNP
rs1367517749 2760 dbSNP
rs917629678 2760 dbSNP
rs1042762261 2765 dbSNP
rs1275710681 2770 dbSNP
rs1438902273 2771 dbSNP
rs773231470 2774 dbSNP
rs1348456813 2778 dbSNP
rs1323320119 2781 dbSNP
rs577636104 2793 dbSNP
rs1285296920 2796 dbSNP
rs966507411 2802 dbSNP
rs544793408 2808 dbSNP
rs1172191129 2809 dbSNP
rs1476578203 2810 dbSNP
rs1418323100 2821 dbSNP
rs1191367068 2823 dbSNP
rs1478824682 2824 dbSNP
rs564496110 2825 dbSNP
rs140842865 2826 dbSNP
rs547047712 2827 dbSNP
rs187009948 2828 dbSNP
rs1039251356 2832 dbSNP
rs1196798955 2847 dbSNP
rs900668937 2847 dbSNP
rs924834227 2850 dbSNP
rs144676268 2851 dbSNP
rs936232027 2856 dbSNP
rs1478323398 2857 dbSNP
rs1054749056 2860 dbSNP
rs76873718 2867 dbSNP
rs952423443 2868 dbSNP
rs771841872 2878 dbSNP
rs910807839 2885 dbSNP
rs1015669143 2888 dbSNP
rs1477277403 2888 dbSNP
rs1379725908 2891 dbSNP
rs1171020862 2903 dbSNP
rs970385647 2910 dbSNP
rs982441992 2912 dbSNP
rs926537987 2913 dbSNP
rs1411934889 2915 dbSNP
rs1176163476 2917 dbSNP
rs569178741 2918 dbSNP
rs1192741225 2919 dbSNP
rs1440129501 2922 dbSNP
rs1349758985 2929 dbSNP
rs1406122682 2931 dbSNP
rs1305003270 2933 dbSNP
rs376491767 2935 dbSNP
rs1480269989 2937 dbSNP
rs989260053 2938 dbSNP
rs796433330 2940 dbSNP
rs369052461 2942 dbSNP
rs71324123 2955 dbSNP
rs1341743105 2956 dbSNP
rs1226342702 2959 dbSNP
rs1310665406 2961 dbSNP
rs572784355 2962 dbSNP
rs1241298461 2963 dbSNP
rs371453829 2966 dbSNP
rs1490482056 2970 dbSNP
rs1356239389 2971 dbSNP
rs1224691908 2973 dbSNP
rs1391256716 2978 dbSNP
rs945461110 2986 dbSNP
rs147510446 2987 dbSNP
rs1172572671 2995 dbSNP
rs1419959998 2997 dbSNP
rs1381861039 2998 dbSNP
rs140078810 3000 dbSNP
rs1193758917 3014 dbSNP
rs1374375454 3016 dbSNP
rs1471616455 3018 dbSNP
rs1013646818 3021 dbSNP
rs1413572314 3025 dbSNP
rs79977932 3027 dbSNP
rs1256928347 3034 dbSNP
rs753616183 3039 dbSNP
rs1358701671 3045 dbSNP
rs1284252139 3048 dbSNP
rs1238865066 3051 dbSNP
rs900744685 3066 dbSNP
rs1359229052 3067 dbSNP
rs565065022 3068 dbSNP
rs1227124596 3077 dbSNP
rs924772686 3079 dbSNP
rs1311746774 3082 dbSNP
rs563059585 3083 dbSNP
rs1286900595 3085 dbSNP
rs957485127 3087 dbSNP
rs990323458 3087 dbSNP
rs543976036 3091 dbSNP
rs1417173061 3095 dbSNP
rs1474203662 3095 dbSNP
rs1194497420 3100 dbSNP
rs910776609 3102 dbSNP
rs1261351655 3106 dbSNP
rs563767605 3109 dbSNP
rs943650884 3110 dbSNP
rs1267635279 3116 dbSNP
rs1049258169 3119 dbSNP
rs923325074 3120 dbSNP
rs1292116661 3126 dbSNP
rs1218784523 3127 dbSNP
rs888233315 3128 dbSNP
rs1341958653 3134 dbSNP
rs764994101 3137 dbSNP
rs1359959758 3154 dbSNP
rs1381328142 3159 dbSNP
rs1301541941 3160 dbSNP
rs1248074038 3162 dbSNP
rs150071854 3166 dbSNP
rs1459758792 3167 dbSNP
rs542028859 3168 dbSNP
rs532626166 3169 dbSNP
rs1478871009 3174 dbSNP
rs1263257432 3176 dbSNP
rs970819213 3178 dbSNP
rs1440306688 3179 dbSNP
rs772626278 3180 dbSNP
rs1433983379 3181 dbSNP
rs1269837798 3186 dbSNP
rs1208486190 3189 dbSNP
rs887871768 3197 dbSNP
rs1003182795 3199 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9975.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000312521.4 | 3UTR | UUCACAAUAUUUUAAACUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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