pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol MED13   
Synonyms ARC250, DRIP250, HSPC221, THRAP1, TRAP240
Description mediator complex subunit 13
Transcript NM_005121   
Expression
Putative miRNA Targets on MED13
3'UTR of MED13
(miRNA target sites are highlighted)
>MED13|NM_005121|3'UTR
   1 TCTTCATTTGATGGAACTGTGCAAGAAAAGAACAAGGAAAAATGGATGTTTCGCTGCAGGATTAAGTTACAATTATCTTC
  81 TCAGTGAAGGTCATTTGTGATGGGGTCTAATTCTTATTACTTCAACAAATATTGTTTTGACTTGGGGGGAGGGGCTATAA
 161 CCCTGCTATTTTTCATTGACTCTATTGAACTCTTTAGGATGATGACTGATCATACAAAACGTATTATAACATTTTCGTAG
 241 CAAAATTAACCTTTTTTTTTTCCAGTCACAGTATTTGTGAAAAGTAATGAGCCATAGTACCCAGTCATGTTAAATGAATA
 321 TTAAAAGCATGGAGAGGAAACATGAGGAACAATGAATTTCAACATATGGCTTCAGAACATGAAGATGTTCTTGTATGGAT
 401 TATAGTATCTAGTATTCAAAAATGCCTGCATCTCTTCTCTTATTTATTGTAAGTTTTTAAATGTATAAATTGTCTTATAT
 481 TTCTTAACCTCTTTTATAAAAATTTTCCTAGAAGGTTTATACTGCCTTCTTGCTTTAAAGCAATTGGTCTAAAATATATG
 561 TAATCGTCTTAATTAAAAAGTTGCAGTAGGGTTGCTTTTAGAGTATTATTTTTTTGTAAGGGGGTGGGTGGGACAGTAAA
 641 TTTGTATTGTCTCGATGTACAGTTTAACGGGGATAGAGGGGGAATAATGTCCATACCATTGTGTGTGGAGGATTTACAGC
 721 TAAGCTGTAGTTGCAGAGTACATGTACAGTAATGAAGTTCACTGTGTTTATAAATTGAAAAGGTACCAGGTCTTACAGCA
 801 TTTTATATATCACATCTTTACAGAATAACATGATGGCAATATACAAGTGGTATTGTTAGGTGGTTTAACTTAGAATAAAA
 881 TGAGAATTCTTCAGTTATATTTTGTACTATGGTTTAGGGCTATGACTAATATTTCAGGCCATTTCCGGTGAAAGAAACTT
 961 AGTTTTACAAGAAAAACCATTTGCTACTGAATGCTTAAACTAATTTTAGTGTTTAATGTTACATGCTTAAATTTTTTTCA
1041 GTTTTAACAGTGGCATATTTAGGCATGGAAATATTATTATGAAATTTATTTTCAGGATCTGCTATAAGGTTGAAATTTAG
1121 CCCAGCTCTAGGCATTTTACAAATTATTTTTCAAGCAGTCATTCTTGATTGTTTGACTTTTTTTTTTAAATTAAAGATTG
1201 GGAATGTATGTGAGAGTATGCATATGTATGGGTGTGTGTGTGTGCGCGCAATCAAACTGTGGTGTAAATAGATTCTCAGT
1281 GAATTCTGGTATTCAGACTCTATTCCACTAGTGAAAGAACCATTTTTTAAACTTCCCTTGCCTTTTTTATTTATTTAATT
1361 TTCTTGGTTTGGAGATGTCAGTCCCAAACACCAGAGTCTGTACTTTTCTATAACACAGCTCAGATTAAGGTAGGGCATAT
1441 GCCAAGGAGGTTCTCACCTCCCTAAAGAAGGGACTTGAATTTTAGGGACTTTAATTCACCCCTCCTTCAATACAACTTTC
1521 CCCCTTCTTGTTTGCACATGCCAAGATAACTGCTTTTATGCAGGCTGTACCCCCTTGAAAAATCCTTTCTACAGTGCTGC
1601 TCACAAAAGAGCCCAAGTTCGCCTCCTACCTGCATTGCTGACTTGAATTCACAGTCGCCGAGTCTACCTAGCTTTCTTGG
1681 AAGCAGTCTAGCAAAATTTCTATTTGTACGTTCACTAATTATCTACAAGGACAAAATCAGTTGTATTTACAAAACTCTAC
1761 TTCAGTGTTTGTTTTAGTTTTTTTTTTTACTGAAACTTGTTTTTGTGAATACTCTGTGCTTAGAATTAAATATCACTTTC
1841 TTATGAACAACATAACTTCTTCAGATTGTGTATATGAAAACATTAGCAAGTCTTGTTTTTTCTATGAAGCAAACACAATT
1921 GGTGACAAAGGTTGTCAATCATTTCTTCAAAATTATAATGCAGTTCTAATGGTCAGCATATTTTGATATTAAATTTAAAG
2001 ATCACCTCTCTGCATTTGTTTTTAAATTATGCTAATACACCACACATTATGTTGGTATGTTTTGTTCTGTACTTTCTTTA
2081 AAAAAAAAAAAAAAACTTGTCTGAGATTTGAAGGAAAATGTGCTTATTTGGAATTTCCATAAAAAGAGTATCCTTTTTAT
2161 ACACTTAATAGTGACTTTACAAAATAAAAGTTATATTCTCAGTTGTTTAAAATCACTAACCTATGATAACCACACCTCAA
2241 TTTGAAAGTAGATTTAAAATTATTCCCTGACAGGTTATTTAATATGGAGCCATAAGGAGGGAACCCAGTACACAATTATT
2321 TTTTATTTGGGAATCAGGGAATAGTTCCCAAATATACAGGATTTATTGATAAGATTTTTTTTCTTCCCTTCATATATCCA
2401 TTCAAACTCAATGGAAAGTTATTAAATAACCATTAGAAAAGCTCAGTAGACTTATTTGAGAAATTAAGCCTTGTGCAGGA
2481 TGATGGATTTGACTTACTAATGTACTGTCACAGACAAATATGGGTAGTTTTGTTTAAATAGGTAAGCAAAATATTATACT
2561 TTATAGCAGTGGATTACCAACACCTTGACTTCTTTGTTACAGTGCTAACATCTTTTTTTTTGTGCAGGTATCCATGATTA
2641 TTAAGCAGGGTGGAAGTTCAGTATTTTGTCATTTAAAAAGATTAGTTATATAATGTCTGCTTCCAGCCAGTGAGAAACAT
2721 CTAGCCATACCTTTCTTATGCAAGCCATTGAGTTATCAGGACTGTGAATTAACACTGTATGAATAAATTTCTGTACACCT
2801 TATTGTTTGGCCAGAAGGCCACCAAGTGTACTTATATGTAATCCTTAAATTTTAAAGTAGCTGTAATTTTTAAATATTTC
2881 TAAACTTTTCTTAAACCACTAAAATTAAGCTCTTACTACTTAGTCAACTATCCTCAGCTGTATTCGTACTCAATTGTCAG
2961 TATGGCACAGATTACTGTATTAAAATATTCTCCTTTCGTCTTCATATTTACCTTCTGAGGTAATTTTTTAACTTAATGTG
3041 TTACTACAAAGATTTGCAGATCTTTAATCAAGCACTATGTTAATACTGTAATATCAGAATACTATGTTGCATTATTTAAA
3121 ATGTTCAAATTGAATAGATTAAAAAGTTTTTAAATGCTATTGCATCATATAATTTGCTATTCATCCACTATGGCATTGCA
3201 TATCAATCAGTTAATACACTTAATGTTGCATGAGTGATATTTTGGTCTGGGTTTCCTCTTAAGATTTTAGTTTGTCTGAA
3281 TTAAGGAAAAATGTTTTTAATATACATTCTTATTTTGTCCCACCCCTCCAGAAATAAGCTGGAAATCTTAACTTTTTGGG
3361 GGGTCTTTTTTGGTGTTTTAATGGGCCCAGAACTGTGGTTTAAATTTTTATGTATGTATTTTCTTTTTTGTGGAGTATAA
3441 ATTTAAAAACTGGATTTGGGACCTAAAATACTCCTCAGGTTGATGTATTCATGAAGTTTTAAAACATCTTTAGTTTTCAA
3521 AGTAAACTGGATATGTGGACCTTAAAGTTATTGAGTTTAAGCTACAAATTGTAACGTCATTACTGGACATGTCAGCATCA
3601 ACCCTCTCAAAATAGCTTGGTCACTTTATGAAGGGGCGTTTTAAAGTTGTTGTTTAGCAGTGACATTTAATATGGTCCAA
3681 TTGCTTTTCTTTTTAACGTGACAAAAAGAGAATAAGGAACAAACACTATTGCTGCCGAATGCCATAACACTGAGTTGTAC
3761 AAATTGTGATTGAGGAAATGAAAAGGTTTATACTTTTTAAAAAAAAAAAAACAAAAACAAAAAACAAAACTTCAAATGGA
3841 ATAAATTATTCATGAAGCCTTCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuagUGUUUACAGGAAUUAUc 5'
               | ||||||::|||||| 
Target 5' taaggAAAAATGTTTTTAATAt 3'
3282 - 3303 157.00 -9.20
2
miRNA  3' cuuAGUGUUUACAGGAAUUAUc 5'
             |:|:| |    ||||||| 
Target 5' tttTTATACA----CTTAATAg 3'
2154 - 2171 145.00 -7.50
3
miRNA  3' cuuAGUGUUUACAGGAAUUAUc 5'
             | |||::| | :|||||| 
Target 5' cccTGACAGGT-TATTTAATAt 3'
2265 - 2285 142.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30513258 12 COSMIC
COSN30513255 14 COSMIC
COSN31499285 14 COSMIC
COSN31562260 16 COSMIC
COSN31551000 19 COSMIC
COSN30450266 36 COSMIC
COSN26984105 52 COSMIC
COSN30723447 64 COSMIC
COSN1199503 84 COSMIC
COSN30183902 89 COSMIC
COSN18741233 104 COSMIC
COSN31538603 114 COSMIC
COSN31513175 251 COSMIC
COSN20761559 293 COSMIC
COSN31479584 316 COSMIC
COSN22732509 346 COSMIC
COSN22699444 434 COSMIC
COSN30158323 474 COSMIC
COSN31555121 496 COSMIC
COSN1725038 565 COSMIC
COSN31513991 643 COSMIC
COSN7441900 679 COSMIC
COSN31589376 686 COSMIC
COSN9672024 783 COSMIC
COSN31548923 1015 COSMIC
COSN31490568 1039 COSMIC
COSN31570508 1187 COSMIC
COSN26736641 1248 COSMIC
COSN31609060 1360 COSMIC
COSN31571014 1467 COSMIC
COSN9672022 1494 COSMIC
COSN31583847 1509 COSMIC
COSN31524253 1666 COSMIC
COSN31533399 1739 COSMIC
COSN19658588 1777 COSMIC
COSN31529143 1780 COSMIC
COSN1725037 1815 COSMIC
COSN27203827 2079 COSMIC
COSN30158151 2079 COSMIC
COSN20114272 2080 COSMIC
COSN30169241 2200 COSMIC
COSN26639132 2357 COSMIC
COSN31596434 2490 COSMIC
COSN23078743 2499 COSMIC
COSN15068671 2558 COSMIC
COSN31524252 2568 COSMIC
COSN29297005 2612 COSMIC
COSN31481088 2697 COSMIC
COSN26586737 2730 COSMIC
COSN18969300 2834 COSMIC
COSN31515056 2946 COSMIC
COSN31571478 2997 COSMIC
COSN26565088 3073 COSMIC
COSN31524342 3101 COSMIC
COSN31516960 3347 COSMIC
COSN31584546 3403 COSMIC
COSN28811531 3648 COSMIC
COSN31552384 3664 COSMIC
COSN20114270 3687 COSMIC
COSN26603177 3798 COSMIC
COSN7441899 3799 COSMIC
COSN1725036 3859 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1481720611 2 dbSNP
rs1270186808 6 dbSNP
rs1193403470 14 dbSNP
rs1485065570 18 dbSNP
rs1244114653 19 dbSNP
rs1003236813 28 dbSNP
rs1216767190 30 dbSNP
rs540629578 33 dbSNP
rs143813799 34 dbSNP
rs751824765 34 dbSNP
rs766036150 35 dbSNP
rs1225385356 36 dbSNP
rs1325592550 37 dbSNP
rs762528548 40 dbSNP
rs1278092340 42 dbSNP
rs761784078 43 dbSNP
rs749999779 44 dbSNP
rs899416796 45 dbSNP
rs764710951 46 dbSNP
rs373088508 52 dbSNP
rs1296368092 53 dbSNP
rs759852613 72 dbSNP
rs1005062941 74 dbSNP
rs1240082412 75 dbSNP
rs142328741 78 dbSNP
rs1191698211 81 dbSNP
rs1423925369 84 dbSNP
rs1479156911 92 dbSNP
rs76094750 93 dbSNP
rs1013200722 95 dbSNP
rs1302422345 114 dbSNP
rs893645073 117 dbSNP
rs766485460 122 dbSNP
rs1316687990 123 dbSNP
rs575940829 126 dbSNP
rs922738077 132 dbSNP
rs763149438 144 dbSNP
rs1437883793 145 dbSNP
rs867794564 148 dbSNP
rs925239449 149 dbSNP
rs1289009323 150 dbSNP
rs1042602361 154 dbSNP
rs1329955607 157 dbSNP
rs942754600 159 dbSNP
rs559194426 160 dbSNP
rs1372060310 161 dbSNP
rs1340689583 163 dbSNP
rs1170532428 164 dbSNP
rs945218105 176 dbSNP
rs1222278319 181 dbSNP
rs1429710183 182 dbSNP
rs540607501 184 dbSNP
rs1489825693 185 dbSNP
rs538396905 186 dbSNP
rs952943738 195 dbSNP
rs74355228 204 dbSNP
rs972906971 205 dbSNP
rs1406293088 206 dbSNP
rs974788984 208 dbSNP
rs1364271412 209 dbSNP
rs758789126 212 dbSNP
rs960181457 215 dbSNP
rs1034818569 220 dbSNP
rs1004988281 221 dbSNP
rs1003698677 227 dbSNP
rs1044519 228 dbSNP
rs950923292 231 dbSNP
rs904863684 232 dbSNP
rs746965538 236 dbSNP
rs552747665 237 dbSNP
rs1482431621 239 dbSNP
rs536267392 257 dbSNP
rs1052337533 261 dbSNP
rs1042349289 262 dbSNP
rs1044520 262 dbSNP
rs945185106 262 dbSNP
rs912366955 264 dbSNP
rs772037122 269 dbSNP
rs1169767313 270 dbSNP
rs1370081685 270 dbSNP
rs1389711172 271 dbSNP
rs1307520428 273 dbSNP
rs1336203571 283 dbSNP
rs1050919274 288 dbSNP
rs938871872 292 dbSNP
rs1447489489 294 dbSNP
rs1314199056 297 dbSNP
rs566888171 300 dbSNP
rs550495710 303 dbSNP
rs1397847716 306 dbSNP
rs922052624 308 dbSNP
rs1341326369 318 dbSNP
rs1449242388 327 dbSNP
rs1193599451 331 dbSNP
rs1280050666 335 dbSNP
rs975135013 347 dbSNP
rs963433249 349 dbSNP
rs1241743849 352 dbSNP
rs1451691819 357 dbSNP
rs1300362033 367 dbSNP
rs1390135788 379 dbSNP
rs1463090184 381 dbSNP
rs1174395719 384 dbSNP
rs1041142988 393 dbSNP
rs942740574 402 dbSNP
rs1414179776 407 dbSNP
rs536926309 408 dbSNP
rs984059285 409 dbSNP
rs769914899 419 dbSNP
rs931301826 425 dbSNP
rs1298005483 432 dbSNP
rs950973297 433 dbSNP
rs571155184 437 dbSNP
rs1176548511 441 dbSNP
rs1025056466 442 dbSNP
rs1251183591 449 dbSNP
rs1202692194 452 dbSNP
rs1260828798 456 dbSNP
rs1465942426 458 dbSNP
rs1013721820 462 dbSNP
rs1247724473 465 dbSNP
rs1427330174 466 dbSNP
rs918865810 478 dbSNP
rs959373222 484 dbSNP
rs371699024 485 dbSNP
rs960233572 489 dbSNP
rs1000938514 490 dbSNP
rs1391142930 491 dbSNP
rs1457917800 494 dbSNP
rs1320979900 501 dbSNP
rs34650448 509 dbSNP
rs928758995 510 dbSNP
rs1380512884 515 dbSNP
rs551149953 520 dbSNP
rs564603583 530 dbSNP
rs1223574543 538 dbSNP
rs1009448735 544 dbSNP
rs778688271 546 dbSNP
rs1284069961 554 dbSNP
rs1050886593 557 dbSNP
rs1023311223 565 dbSNP
rs1010603628 566 dbSNP
rs957672493 576 dbSNP
rs932501066 577 dbSNP
rs1030962194 581 dbSNP
rs1485085890 583 dbSNP
rs1212195811 588 dbSNP
rs999435933 609 dbSNP
rs756858232 615 dbSNP
rs1197383149 616 dbSNP
rs1414185360 621 dbSNP
rs1385565467 624 dbSNP
rs1039157519 626 dbSNP
rs1364940638 639 dbSNP
rs1301982388 641 dbSNP
rs1287474449 644 dbSNP
rs1424668479 648 dbSNP
rs1367064448 649 dbSNP
rs1156405917 653 dbSNP
rs942016546 661 dbSNP
rs1452824504 664 dbSNP
rs182493512 668 dbSNP
rs1161261228 669 dbSNP
rs1391391595 672 dbSNP
rs1431353430 674 dbSNP
rs566957118 677 dbSNP
rs1351787227 681 dbSNP
rs1410108590 683 dbSNP
rs1305815338 697 dbSNP
rs1314725079 702 dbSNP
rs777276488 725 dbSNP
rs1268358732 741 dbSNP
rs1266347455 743 dbSNP
rs1200240794 747 dbSNP
rs1006989474 748 dbSNP
rs546747032 751 dbSNP
rs1220896690 752 dbSNP
rs889898183 757 dbSNP
rs755568703 762 dbSNP
rs530119934 770 dbSNP
rs796317297 775 dbSNP
rs1261336375 783 dbSNP
rs1176877434 785 dbSNP
rs753230476 787 dbSNP
rs1425730369 788 dbSNP
rs1216113934 796 dbSNP
rs1166668891 798 dbSNP
rs1368827558 805 dbSNP
rs561246723 807 dbSNP
rs577429242 814 dbSNP
rs531222966 819 dbSNP
rs959608495 830 dbSNP
rs1297057721 832 dbSNP
rs1370738221 833 dbSNP
rs1231781561 836 dbSNP
rs1037255319 839 dbSNP
rs938891289 840 dbSNP
rs928835095 842 dbSNP
rs979171685 843 dbSNP
rs1283491697 849 dbSNP
rs1244487152 855 dbSNP
rs1277361959 859 dbSNP
rs1312125537 862 dbSNP
rs980646637 882 dbSNP
rs1203944438 889 dbSNP
rs1249632297 890 dbSNP
rs968205943 892 dbSNP
rs755419592 898 dbSNP
rs781334726 902 dbSNP
rs1443748963 907 dbSNP
rs1405052454 909 dbSNP
rs75944015 911 dbSNP
rs1391969412 920 dbSNP
rs1410403716 921 dbSNP
rs1009250869 928 dbSNP
rs1346801862 932 dbSNP
rs751855712 940 dbSNP
rs73334651 946 dbSNP
rs1405865021 947 dbSNP
rs1381279843 948 dbSNP
rs1385471471 949 dbSNP
rs1160079169 963 dbSNP
rs1300212203 972 dbSNP
rs1366577646 974 dbSNP
rs35623549 977 dbSNP
rs1214428248 984 dbSNP
rs1293595644 1001 dbSNP
rs957725727 1007 dbSNP
rs573329214 1008 dbSNP
rs1029608889 1014 dbSNP
rs1177015119 1015 dbSNP
rs1481480004 1018 dbSNP
rs997080831 1021 dbSNP
rs367928711 1026 dbSNP
rs555909912 1029 dbSNP
rs965645795 1030 dbSNP
rs1447786312 1031 dbSNP
rs1416837690 1034 dbSNP
rs1264038589 1050 dbSNP
rs899696308 1053 dbSNP
rs1176474160 1055 dbSNP
rs1428195900 1057 dbSNP
rs1019516364 1061 dbSNP
rs1467852018 1065 dbSNP
rs1322975327 1066 dbSNP
rs553048878 1073 dbSNP
rs1430704365 1079 dbSNP
rs942086779 1081 dbSNP
rs887875994 1097 dbSNP
rs542341731 1101 dbSNP
rs929334278 1104 dbSNP
rs1048498340 1109 dbSNP
rs11546688 1111 dbSNP
rs1225853107 1112 dbSNP
rs995518348 1112 dbSNP
rs992406530 1114 dbSNP
rs536649696 1120 dbSNP
rs1321673773 1122 dbSNP
rs897162811 1123 dbSNP
rs1325127098 1125 dbSNP
rs12952079 1127 dbSNP
rs1275739682 1130 dbSNP
rs1226320169 1139 dbSNP
rs1269846458 1141 dbSNP
rs1326664826 1169 dbSNP
rs766689915 1171 dbSNP
rs763099699 1172 dbSNP
rs1319820790 1174 dbSNP
rs1394098675 1176 dbSNP
rs938271685 1181 dbSNP
rs938957801 1187 dbSNP
rs530835892 1188 dbSNP
rs868052726 1188 dbSNP
rs967795205 1188 dbSNP
rs1400520786 1196 dbSNP
rs773983106 1196 dbSNP
rs1157312214 1199 dbSNP
rs1044632377 1205 dbSNP
rs1406013174 1206 dbSNP
rs1302698420 1207 dbSNP
rs544125683 1216 dbSNP
rs914735796 1217 dbSNP
rs1411965428 1218 dbSNP
rs1029577592 1219 dbSNP
rs989236656 1222 dbSNP
rs936382620 1226 dbSNP
rs1323438353 1232 dbSNP
rs1223129702 1233 dbSNP
rs1267627963 1237 dbSNP
rs573329606 1243 dbSNP
rs1233122176 1245 dbSNP
rs762504421 1245 dbSNP
rs769759295 1245 dbSNP
rs978191714 1245 dbSNP
rs965056548 1246 dbSNP
rs556534356 1247 dbSNP
rs985389007 1248 dbSNP
rs1444447947 1250 dbSNP
rs887845947 1251 dbSNP
rs1363838263 1256 dbSNP
rs536988327 1264 dbSNP
rs1047842600 1269 dbSNP
rs1335415764 1275 dbSNP
rs954023276 1278 dbSNP
rs1277624699 1296 dbSNP
rs190215380 1300 dbSNP
rs1272838439 1301 dbSNP
rs995565658 1302 dbSNP
rs1194750834 1313 dbSNP
rs186501038 1314 dbSNP
rs183581232 1328 dbSNP
rs562056483 1329 dbSNP
rs1273011896 1332 dbSNP
rs1271605329 1340 dbSNP
rs866949438 1342 dbSNP
rs938254065 1347 dbSNP
rs1242128071 1348 dbSNP
rs565700357 1349 dbSNP
rs775224285 1349 dbSNP
rs1381832410 1360 dbSNP
rs1015617656 1365 dbSNP
rs1445590751 1374 dbSNP
rs1315457902 1375 dbSNP
rs1003308126 1388 dbSNP
rs926882438 1399 dbSNP
rs1043887547 1400 dbSNP
rs1408490015 1402 dbSNP
rs946898244 1402 dbSNP
rs907198651 1407 dbSNP
rs1407060346 1410 dbSNP
rs1453132667 1430 dbSNP
rs1314033684 1432 dbSNP
rs376071613 1432 dbSNP
rs1328041243 1437 dbSNP
rs1045076122 1440 dbSNP
rs573583434 1442 dbSNP
rs913650957 1443 dbSNP
rs987922696 1444 dbSNP
rs1410633823 1449 dbSNP
rs948964623 1456 dbSNP
rs1338150813 1458 dbSNP
rs761957131 1467 dbSNP
rs1280337714 1477 dbSNP
rs1461454654 1479 dbSNP
rs893327240 1480 dbSNP
rs1054599758 1497 dbSNP
rs1466692475 1501 dbSNP
rs1398687550 1510 dbSNP
rs1372627374 1511 dbSNP
rs191683034 1513 dbSNP
rs934803522 1522 dbSNP
rs1174340361 1523 dbSNP
rs1430260932 1534 dbSNP
rs1469421843 1545 dbSNP
rs922222123 1555 dbSNP
rs975500811 1573 dbSNP
rs1161724704 1593 dbSNP
rs1318851329 1605 dbSNP
rs1325748334 1612 dbSNP
rs963964580 1614 dbSNP
rs1284584897 1620 dbSNP
rs923710337 1621 dbSNP
rs1386317421 1628 dbSNP
rs1445643937 1630 dbSNP
rs1353259868 1634 dbSNP
rs1005383354 1656 dbSNP
rs1261667426 1658 dbSNP
rs554984109 1659 dbSNP
rs1445719885 1664 dbSNP
rs775622246 1675 dbSNP
rs1201094310 1683 dbSNP
rs977703352 1684 dbSNP
rs187243735 1688 dbSNP
rs879773364 1699 dbSNP
rs1480264098 1706 dbSNP
rs951253197 1709 dbSNP
rs1025441702 1710 dbSNP
rs372083213 1717 dbSNP
rs912198380 1722 dbSNP
rs567706140 1727 dbSNP
rs118067315 1730 dbSNP
rs1002645878 1740 dbSNP
rs1026786380 1743 dbSNP
rs1304503790 1743 dbSNP
rs368458282 1753 dbSNP
rs1219870720 1755 dbSNP
rs1358282184 1756 dbSNP
rs1291969847 1757 dbSNP
rs1247925793 1759 dbSNP
rs1044407772 1760 dbSNP
rs9977 1763 dbSNP
rs1370855826 1770 dbSNP
rs1278927243 1775 dbSNP
rs947034595 1778 dbSNP
rs530881841 1788 dbSNP
rs879459006 1789 dbSNP
rs946859683 1789 dbSNP
rs11546689 1799 dbSNP
rs961175716 1807 dbSNP
rs1321661642 1809 dbSNP
rs566036147 1815 dbSNP
rs1404337299 1817 dbSNP
rs933702170 1819 dbSNP
rs1419839508 1823 dbSNP
rs566296439 1824 dbSNP
rs922357021 1830 dbSNP
rs1363010558 1831 dbSNP
rs1451617964 1832 dbSNP
rs565600027 1833 dbSNP
rs1423486433 1836 dbSNP
rs975091640 1844 dbSNP
rs1375078113 1848 dbSNP
rs1391606045 1850 dbSNP
rs1407676466 1852 dbSNP
rs1334324895 1855 dbSNP
rs557843949 1856 dbSNP
rs1316385665 1859 dbSNP
rs1002951315 1876 dbSNP
rs1359283957 1877 dbSNP
rs909794735 1880 dbSNP
rs73334646 1881 dbSNP
rs1195434290 1885 dbSNP
rs1249618032 1887 dbSNP
rs1437557032 1890 dbSNP
rs1185159690 1906 dbSNP
rs1234182854 1914 dbSNP
rs111486843 1917 dbSNP
rs182162867 1918 dbSNP
rs951305396 1918 dbSNP
rs559669302 1920 dbSNP
rs542754360 1938 dbSNP
rs1462220615 1948 dbSNP
rs960765782 1954 dbSNP
rs1224209970 1960 dbSNP
rs1454935324 1971 dbSNP
rs1316102792 1976 dbSNP
rs1013599295 1989 dbSNP
rs893422010 1993 dbSNP
rs1002206810 2000 dbSNP
rs1297895808 2011 dbSNP
rs1054696845 2013 dbSNP
rs73334645 2014 dbSNP
rs903345289 2033 dbSNP
rs556597443 2034 dbSNP
rs1011122009 2037 dbSNP
rs1042541095 2039 dbSNP
rs774017981 2041 dbSNP
rs1243522133 2051 dbSNP
rs1460860087 2055 dbSNP
rs543015526 2057 dbSNP
rs1421072081 2068 dbSNP
rs1428622903 2069 dbSNP
rs1169072693 2072 dbSNP
rs1243102424 2076 dbSNP
rs1382568438 2079 dbSNP
rs1470715151 2080 dbSNP
rs554254241 2089 dbSNP
rs371123085 2091 dbSNP
rs1305232566 2092 dbSNP
rs1052575081 2096 dbSNP
rs1263582972 2096 dbSNP
rs1315278738 2096 dbSNP
rs1451163752 2096 dbSNP
rs1491075260 2096 dbSNP
rs201249883 2096 dbSNP
rs567268202 2096 dbSNP
rs878916751 2096 dbSNP
rs934174721 2096 dbSNP
rs1322523529 2097 dbSNP
rs1398360177 2098 dbSNP
rs1243796600 2099 dbSNP
rs1345033992 2100 dbSNP
rs900920136 2110 dbSNP
rs1039894110 2122 dbSNP
rs1260405034 2127 dbSNP
rs1481249272 2137 dbSNP
rs1402739101 2139 dbSNP
rs1176685409 2146 dbSNP
rs1423704986 2149 dbSNP
rs1429076394 2150 dbSNP
rs1176283082 2151 dbSNP
rs1413152985 2152 dbSNP
rs1161673642 2161 dbSNP
rs912236320 2162 dbSNP
rs1346321927 2163 dbSNP
rs1479845496 2167 dbSNP
rs942475489 2169 dbSNP
rs1429349619 2171 dbSNP
rs577187831 2175 dbSNP
rs1049373762 2177 dbSNP
rs546538016 2180 dbSNP
rs932304590 2180 dbSNP
rs909501295 2182 dbSNP
rs1484686127 2185 dbSNP
rs558045175 2194 dbSNP
rs1241090609 2195 dbSNP
rs1282913046 2198 dbSNP
rs973956793 2200 dbSNP
rs1217276263 2202 dbSNP
rs187963627 2202 dbSNP
rs1286000227 2208 dbSNP
rs569496234 2209 dbSNP
rs1214971827 2218 dbSNP
rs1283328181 2220 dbSNP
rs908336292 2223 dbSNP
rs151294642 2225 dbSNP
rs113200887 2234 dbSNP
rs1045196 2235 dbSNP
rs1012944946 2240 dbSNP
rs1213105145 2242 dbSNP
rs1361537919 2249 dbSNP
rs1270935552 2251 dbSNP
rs957355147 2254 dbSNP
rs1367958354 2256 dbSNP
rs567765846 2263 dbSNP
rs969502572 2265 dbSNP
rs1022692087 2272 dbSNP
rs1033294461 2278 dbSNP
rs999073149 2284 dbSNP
rs903350965 2285 dbSNP
rs1302559259 2288 dbSNP
rs1348359915 2292 dbSNP
rs1433357242 2305 dbSNP
rs1040521028 2313 dbSNP
rs1008409105 2315 dbSNP
rs1373765778 2319 dbSNP
rs1223191495 2322 dbSNP
rs892707910 2327 dbSNP
rs1031280113 2342 dbSNP
rs1413443877 2348 dbSNP
rs1336700545 2351 dbSNP
rs1290316070 2354 dbSNP
rs1470579291 2355 dbSNP
rs551068455 2357 dbSNP
rs1206154243 2358 dbSNP
rs1469973987 2360 dbSNP
rs1177972371 2365 dbSNP
rs1177104584 2375 dbSNP
rs1387641299 2383 dbSNP
rs1049927413 2386 dbSNP
rs1411706988 2387 dbSNP
rs1039877997 2389 dbSNP
rs1329759459 2402 dbSNP
rs537458098 2405 dbSNP
rs1328975407 2406 dbSNP
rs1384913671 2421 dbSNP
rs919587302 2422 dbSNP
rs1313799135 2427 dbSNP
rs1353605493 2441 dbSNP
rs866689715 2445 dbSNP
rs1161846278 2446 dbSNP
rs56328668 2451 dbSNP
rs939902821 2452 dbSNP
rs1436802842 2453 dbSNP
rs1197146076 2455 dbSNP
rs755660658 2456 dbSNP
rs908390203 2468 dbSNP
rs1183498866 2470 dbSNP
rs370237483 2478 dbSNP
rs552080124 2493 dbSNP
rs1168519857 2499 dbSNP
rs981327062 2501 dbSNP
rs145960183 2503 dbSNP
rs1464206246 2514 dbSNP
rs1168358507 2517 dbSNP
rs1461712884 2520 dbSNP
rs1407998126 2521 dbSNP
rs528778109 2527 dbSNP
rs971618589 2532 dbSNP
rs1333463010 2541 dbSNP
rs1338578121 2546 dbSNP
rs1270202918 2558 dbSNP
rs1432300151 2558 dbSNP
rs918502289 2562 dbSNP
rs1216397276 2563 dbSNP
rs992737736 2565 dbSNP
rs938619707 2568 dbSNP
rs927079575 2570 dbSNP
rs1202545286 2574 dbSNP
rs1193997812 2580 dbSNP
rs979976597 2590 dbSNP
rs1306943687 2595 dbSNP
rs1296609148 2596 dbSNP
rs1430196103 2602 dbSNP
rs1470142866 2612 dbSNP
rs916035836 2613 dbSNP
rs1171720301 2615 dbSNP
rs143989721 2617 dbSNP
rs148391388 2620 dbSNP
rs956727433 2622 dbSNP
rs1032970962 2624 dbSNP
rs1381112518 2624 dbSNP
rs1031017586 2627 dbSNP
rs866193586 2628 dbSNP
rs1314785584 2629 dbSNP
rs529398391 2630 dbSNP
rs999124119 2639 dbSNP
rs1233002705 2640 dbSNP
rs1453750248 2646 dbSNP
rs868751272 2648 dbSNP
rs1254564706 2652 dbSNP
rs1353556205 2653 dbSNP
rs967624850 2659 dbSNP
rs1385636808 2683 dbSNP
rs1487366551 2684 dbSNP
rs1201623421 2688 dbSNP
rs1269885352 2689 dbSNP
rs879490222 2692 dbSNP
rs1009093651 2701 dbSNP
rs1375705152 2705 dbSNP
rs889282880 2706 dbSNP
rs1159046250 2709 dbSNP
rs1359783273 2711 dbSNP
rs1417349225 2713 dbSNP
rs1018830181 2719 dbSNP
rs1264619073 2720 dbSNP
rs1460051562 2739 dbSNP
rs1028064936 2743 dbSNP
rs996519932 2779 dbSNP
rs1365814522 2781 dbSNP
rs1385873318 2786 dbSNP
rs1299716868 2799 dbSNP
rs185065407 2800 dbSNP
rs1170770640 2803 dbSNP
rs1240155285 2817 dbSNP
rs1037977752 2820 dbSNP
rs939676331 2821 dbSNP
rs1352072239 2825 dbSNP
rs1224821812 2828 dbSNP
rs888175189 2834 dbSNP
rs1292579374 2835 dbSNP
rs543076910 2837 dbSNP
rs1182762934 2838 dbSNP
rs993786024 2841 dbSNP
rs796080081 2844 dbSNP
rs1046057837 2845 dbSNP
rs1182201435 2852 dbSNP
rs1437674937 2858 dbSNP
rs938574415 2866 dbSNP
rs1385299477 2869 dbSNP
rs1457138915 2871 dbSNP
rs1291459412 2879 dbSNP
rs1398123620 2888 dbSNP
rs1175373745 2889 dbSNP
rs773808764 2893 dbSNP
rs1331019750 2896 dbSNP
rs1375412697 2897 dbSNP
rs1480375600 2900 dbSNP
rs927243175 2902 dbSNP
rs568762450 2910 dbSNP
rs1251949127 2911 dbSNP
rs747634856 2915 dbSNP
rs1321161993 2917 dbSNP
rs1242650415 2925 dbSNP
rs577250180 2926 dbSNP
rs1044606872 2927 dbSNP
rs1481049640 2930 dbSNP
rs947262798 2934 dbSNP
rs1199042479 2936 dbSNP
rs1357559127 2937 dbSNP
rs772560422 2942 dbSNP
rs1456435585 2945 dbSNP
rs180995813 2946 dbSNP
rs1361985273 2952 dbSNP
rs1305546390 2953 dbSNP
rs989532456 2989 dbSNP
rs1462172576 2990 dbSNP
rs538728272 2997 dbSNP
rs546726766 2998 dbSNP
rs925954038 3001 dbSNP
rs1372056951 3004 dbSNP
rs977450517 3005 dbSNP
rs1257246053 3009 dbSNP
rs866859340 3011 dbSNP
rs1315803262 3012 dbSNP
rs1205275003 3013 dbSNP
rs976795005 3013 dbSNP
rs1256527750 3017 dbSNP
rs1482846328 3020 dbSNP
rs1298247614 3023 dbSNP
rs1263202481 3028 dbSNP
rs1477971153 3035 dbSNP
rs572262470 3035 dbSNP
rs967766228 3036 dbSNP
rs536823470 3038 dbSNP
rs1177531882 3040 dbSNP
rs1359101979 3045 dbSNP
rs1464980366 3054 dbSNP
rs1018552150 3056 dbSNP
rs1362728282 3057 dbSNP
rs1399674507 3060 dbSNP
rs1193719539 3066 dbSNP
rs1276581309 3067 dbSNP
rs1019235280 3069 dbSNP
rs1347553590 3070 dbSNP
rs567787812 3077 dbSNP
rs1007467817 3079 dbSNP
rs1311587367 3086 dbSNP
rs1207907549 3087 dbSNP
rs952917614 3096 dbSNP
rs1488348784 3097 dbSNP
rs1215198426 3113 dbSNP
rs1260610276 3114 dbSNP
rs1481176435 3127 dbSNP
rs953580806 3129 dbSNP
rs555591449 3133 dbSNP
rs1425103964 3136 dbSNP
rs1029079187 3140 dbSNP
rs535669968 3144 dbSNP
rs1161878472 3145 dbSNP
rs1361692574 3155 dbSNP
rs1419183411 3156 dbSNP
rs576271908 3157 dbSNP
rs1367759506 3158 dbSNP
rs557524482 3159 dbSNP
rs1275273321 3162 dbSNP
rs1366605430 3169 dbSNP
rs993838423 3179 dbSNP
rs1369952871 3192 dbSNP
rs188480045 3193 dbSNP
rs1418423430 3198 dbSNP
rs1056696898 3206 dbSNP
rs1179040623 3210 dbSNP
rs898222742 3218 dbSNP
rs1002569849 3224 dbSNP
rs1487705525 3230 dbSNP
rs1246535368 3232 dbSNP
rs905755804 3240 dbSNP
rs1044358084 3255 dbSNP
rs1016620050 3257 dbSNP
rs1439615106 3258 dbSNP
rs1362101769 3260 dbSNP
rs1387136982 3266 dbSNP
rs184880749 3268 dbSNP
rs947301037 3274 dbSNP
rs571660880 3279 dbSNP
rs914371380 3279 dbSNP
rs1348306009 3286 dbSNP
rs1434043884 3287 dbSNP
rs551476012 3290 dbSNP
rs1377643328 3294 dbSNP
rs1239044285 3296 dbSNP
rs534974782 3303 dbSNP
rs1309718682 3309 dbSNP
rs924051910 3310 dbSNP
rs1360942110 3313 dbSNP
rs1045657850 3326 dbSNP
rs748730114 3327 dbSNP
rs1343052345 3336 dbSNP
rs949967084 3339 dbSNP
rs894329809 3341 dbSNP
rs1055605454 3347 dbSNP
rs1239153649 3349 dbSNP
rs752048421 3351 dbSNP
rs935805092 3358 dbSNP
rs1245465320 3362 dbSNP
rs193050394 3363 dbSNP
rs952966510 3364 dbSNP
rs1411904891 3366 dbSNP
rs977502758 3372 dbSNP
rs1172628421 3375 dbSNP
rs1027086460 3382 dbSNP
rs1286902068 3384 dbSNP
rs1446006698 3387 dbSNP
rs972888987 3392 dbSNP
rs1342145455 3398 dbSNP
rs1448144049 3400 dbSNP
rs149323845 3411 dbSNP
rs1215934122 3416 dbSNP
rs1035466886 3427 dbSNP
rs1317723803 3431 dbSNP
rs1197088315 3440 dbSNP
rs780306351 3445 dbSNP
rs1161231915 3462 dbSNP
rs1451824428 3465 dbSNP
rs1187015051 3468 dbSNP
rs1235794565 3471 dbSNP
rs1476541013 3473 dbSNP
rs1002948850 3476 dbSNP
rs1479519989 3484 dbSNP
rs905560734 3486 dbSNP
rs1023057288 3490 dbSNP
rs1168203545 3494 dbSNP
rs1404346896 3496 dbSNP
rs115121869 3505 dbSNP
rs758749766 3507 dbSNP
rs1052929864 3509 dbSNP
rs1401258355 3514 dbSNP
rs750714479 3520 dbSNP
rs563522162 3531 dbSNP
rs973565534 3537 dbSNP
rs1217186984 3538 dbSNP
rs963510717 3545 dbSNP
rs1016672533 3550 dbSNP
rs549491349 3551 dbSNP
rs1200363821 3556 dbSNP
rs1263051973 3561 dbSNP
rs532856958 3562 dbSNP
rs528492810 3570 dbSNP
rs866938640 3575 dbSNP
rs1004334667 3576 dbSNP
rs1476927511 3589 dbSNP
rs951080230 3595 dbSNP
rs1379127977 3601 dbSNP
rs765536523 3602 dbSNP
rs1171954564 3603 dbSNP
rs1282083005 3606 dbSNP
rs1298200589 3608 dbSNP
rs1014182999 3614 dbSNP
rs756252963 3615 dbSNP
rs1397735977 3616 dbSNP
rs1326007009 3624 dbSNP
rs985882065 3624 dbSNP
rs931535716 3627 dbSNP
rs920207346 3634 dbSNP
rs373336007 3636 dbSNP
rs762045094 3637 dbSNP
rs564170496 3638 dbSNP
rs972854782 3643 dbSNP
rs1224964155 3655 dbSNP
rs762294611 3655 dbSNP
rs904350758 3662 dbSNP
rs1451988670 3666 dbSNP
rs1197829880 3675 dbSNP
rs540675419 3680 dbSNP
rs202050543 3689 dbSNP
rs139441247 3692 dbSNP
rs1158787185 3697 dbSNP
rs1385360241 3697 dbSNP
rs1322523008 3698 dbSNP
rs1468157441 3700 dbSNP
rs1405528094 3708 dbSNP
rs1177252039 3717 dbSNP
rs970232534 3726 dbSNP
rs1041815047 3728 dbSNP
rs75729250 3736 dbSNP
rs561852467 3737 dbSNP
rs1379851268 3742 dbSNP
rs546297762 3744 dbSNP
rs1308669017 3745 dbSNP
rs147189111 3748 dbSNP
rs1192700247 3751 dbSNP
rs1429525684 3759 dbSNP
rs764102397 3769 dbSNP
rs1266275574 3775 dbSNP
rs1250268160 3777 dbSNP
rs1278808584 3784 dbSNP
rs1011277672 3786 dbSNP
rs1459075826 3787 dbSNP
rs1179147915 3792 dbSNP
rs893040825 3796 dbSNP
rs1182358575 3797 dbSNP
rs571701522 3798 dbSNP
rs1368696152 3799 dbSNP
rs1457095364 3799 dbSNP
rs556389600 3799 dbSNP
rs911916669 3800 dbSNP
rs190038315 3806 dbSNP
rs543694077 3807 dbSNP
rs578039563 3807 dbSNP
rs889880054 3808 dbSNP
rs377276211 3810 dbSNP
rs1340157019 3811 dbSNP
rs1049735085 3812 dbSNP
rs1183167841 3812 dbSNP
rs1198989923 3812 dbSNP
rs1242855837 3812 dbSNP
rs1257364630 3812 dbSNP
rs1271081861 3812 dbSNP
rs1295390577 3812 dbSNP
rs1391515325 3812 dbSNP
rs1185380654 3813 dbSNP
rs1425262807 3813 dbSNP
rs1249298243 3814 dbSNP
rs1226209458 3815 dbSNP
rs1478358972 3816 dbSNP
rs1170326514 3818 dbSNP
rs1398821824 3818 dbSNP
rs1468017363 3818 dbSNP
rs931337510 3821 dbSNP
rs1326867156 3822 dbSNP
rs1299541763 3825 dbSNP
rs1450106117 3826 dbSNP
rs1280361026 3828 dbSNP
rs1341299080 3831 dbSNP
rs1381962785 3835 dbSNP
rs1337260501 3837 dbSNP
rs1305757410 3841 dbSNP
rs922226108 3853 dbSNP
rs1256470529 3857 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9969.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuAGUGUUUACAGGAAUUAUc 5'
             |:|:| |    ||||||| 
Target 5' uuuUUAUACA----CUUAAUAg 3'
6 - 23
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000397786.2 | 3UTR | UAUCCUUUUUAUACACUUAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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