pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAT2A   
Synonyms MATA2, MATII, SAMS2
Description methionine adenosyltransferase 2A
Transcript NM_005911   
Expression
Putative miRNA Targets on MAT2A
3'UTR of MAT2A
(miRNA target sites are highlighted)
>MAT2A|NM_005911|3'UTR
   1 AAGTGTTAGCCTTTTTTCCCCAGACTTGTTGGCGTAGGCTACAGAGAAGCCTTCAAGCTCTGAGGGAAAGGGCCCTCCTT
  81 CCTAAATTTTCCTGTCCTCTTTCAGCTCCTGACCAGTTGCAGTCACTCTAGTCAATGACATGAATTTTAGCTTTTGTGGG
 161 GGACTGTAAGTTGGGCTTGCTATTCTGTCCCTAGGTGTTTTGTTCACCATTATAATGAATTTAGTGAGCATAGGTGATCC
 241 ATGTAACTGCCTAGAAACAACACTGTAGTAAATAATGCTTTGAAATTGAACCTTTGTGCCCTATCACCCAACGCTCCAAA
 321 GTCATAATTGCATTGACTTTCCCCACCAGATGCTGAAAATGTCCTTGTGATGTGCACGTAAAGTACTTGTAGTTCCACTT
 401 ATAGCCTCTGTCTGGCAATGCCACAGCCCTGTCAGCATGAATTTGTAATGTCTTGAGCTCTATTATGAATGTGAAGCCTT
 481 CCCCTTATCCTCCCTGTAACTTGATCCATTTCTAATTATGTAGCTCTTTGTCAGGGAGTGTTCCCTATCCAATCAATCTT
 561 GCATGTAACGCAAGTTCCCAGTTGGAGCTCCAGCCTGACATCAAAAAAGGCAGTTACCATTAAACCATCTCCCTGGTGCT
 641 TATGCTCTTAATTGCCACCTCTAACAGCACCAAATCAAAATCTCTCCACTTTCAGCTGTCTTTTGGAGGACGTACGTAAT
 721 AAGGTTTTAATTTAGTAAACCAATCCTATGCATGGTTTCAGCACTAGCCAAACCTCACCAACTCCTAGTTCTAGAAAAAC
 801 AGGCACTTGGCAGCCTTGTGATGTCATACAGAGAAGTCACAGGGCAGTACCTGAGGGTCTGTAGGTTGCACACTTTGGTA
 881 CCAGATAACTTTTTTTTTTCTTTATAAGAAAGCCTGAGTACTCCACACTGCACAATAACTCCTCCCAGGGTTTTAACTTT
 961 GTTTTATTTTCAAAACCAGGTCCAATGAGCTTTCTGAACAGCTGGTGTAGCTACAGAGAAACCAGCTTCCTTCAGAGAGC
1041 AGTGCTTTTGGCGGGGAGGAGGAAATCCCTTCATACTTGAACGTTTTCTAATTGCTTATTTATTGTATTCTGGGGTATGG
1121 CGTAAGTACAGAGAAGCCATCACCTCAGATGGCAGCTTTTAAAAGATTTTTTTTTTTTCTCTCAACACCATGATTCCTTT
1201 AACAACATGTTTCCAGCATTCCCAGGTAGGCCAAGGTGTCCTACAGAAAAACCTTGGGTTAGACCTACAGGGGGTCTGGC
1281 TGGTGTTAACAGAAGGGAGGGCAGAGCTGGTGCGGCTGGCCATGGAGAAAGCTGACTTGGCTGGTGTGGTACAGAGAAGC
1361 CAGCTTGTTTACATGCTTATTCCATGACTGCTTGCCCTAAGCAGAAAGTGCCTTTCAGGATCTATTTTTGGAGGTTTATT
1441 ACGTATGTCTGGTTCTCAATTCCAACAGTTTAATGAAGATCTAAATAAAATGCTAGGTTCTACCTTAAAAAAAAAAAAAA
1521 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaaCCCAAAAUU--CUCAAGAAAu 5'
             |||||||||    |||:| | 
Target 5' ccaGGGTTTTAACTTTGTTTTATt 3'
945 - 968 121.00 -10.42
2
miRNA  3' uaaCCCAAAAUUCUCAA-----GAAAu 5'
             |||| |  || |||     |||| 
Target 5' tgaGGGTCTGTAG-GTTGCACACTTTg 3'
852 - 877 94.00 -8.20
3
miRNA  3' uaACCCAA-----A-AUUCUCAAGAaau 5'
            ||||||     |  |:|:| |||   
Target 5' ctTGGGTTAGACCTACAGGGGGTCTggc 3'
1253 - 1280 88.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
337171 1166 ClinVar
337172 1167 ClinVar
337173 1268 ClinVar
898899 1315 ClinVar
898900 1323 ClinVar
898901 1365 ClinVar
337174 1419 ClinVar
337175 1437 ClinVar
895937 1443 ClinVar
895938 1482 ClinVar
COSN31491713 2 COSMIC
COSN30569488 8 COSMIC
COSN31518289 17 COSMIC
COSN31482386 30 COSMIC
COSN14532144 93 COSMIC
COSN9391534 100 COSMIC
COSN20288801 186 COSMIC
COSN26556738 250 COSMIC
COSN20090570 279 COSMIC
COSN31601278 302 COSMIC
COSN26670157 313 COSMIC
COSN5865552 336 COSMIC
COSN31588545 347 COSMIC
COSN31559515 535 COSMIC
COSN31545991 562 COSMIC
COSN26601554 580 COSMIC
COSN6559526 605 COSMIC
COSN31563363 643 COSMIC
COSN31489295 662 COSMIC
COSN31518105 716 COSMIC
COSN22229193 749 COSMIC
COSN31959778 769 COSMIC
COSN16524245 775 COSMIC
COSN28669283 869 COSMIC
COSN28250198 914 COSMIC
COSN20090571 1017 COSMIC
COSN27886919 1152 COSMIC
COSN31529730 1180 COSMIC
COSN28249874 1182 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171039097 1 dbSNP
rs776431969 8 dbSNP
rs1359092024 10 dbSNP
rs1412686279 11 dbSNP
rs1332323028 12 dbSNP
rs372099842 13 dbSNP
rs1448793530 17 dbSNP
rs1315047771 19 dbSNP
rs1338624920 21 dbSNP
rs749458057 23 dbSNP
rs769156900 30 dbSNP
rs774638304 31 dbSNP
rs1342163005 34 dbSNP
rs762233743 37 dbSNP
rs1277360846 39 dbSNP
rs1312288358 50 dbSNP
rs952350922 58 dbSNP
rs1180192001 70 dbSNP
rs1483002521 76 dbSNP
rs1236811167 86 dbSNP
rs1204174398 92 dbSNP
rs1233656160 98 dbSNP
rs1486508152 104 dbSNP
rs984413834 106 dbSNP
rs1484269551 109 dbSNP
rs148739699 112 dbSNP
rs1342436786 114 dbSNP
rs1297358338 120 dbSNP
rs1417541111 123 dbSNP
rs940192158 125 dbSNP
rs1417193735 126 dbSNP
rs1369041877 129 dbSNP
rs1475832951 136 dbSNP
rs1430875852 141 dbSNP
rs1165445622 143 dbSNP
rs530472867 149 dbSNP
rs1163012698 153 dbSNP
rs1423286919 155 dbSNP
rs1407707065 158 dbSNP
rs1414665222 163 dbSNP
rs1188510143 164 dbSNP
rs1476155208 165 dbSNP
rs1249259783 166 dbSNP
rs1480869596 167 dbSNP
rs992982477 167 dbSNP
rs1252678305 168 dbSNP
rs1218975506 174 dbSNP
rs1320547079 177 dbSNP
rs549048191 179 dbSNP
rs917340680 183 dbSNP
rs1235611950 184 dbSNP
rs1349174972 186 dbSNP
rs948859314 192 dbSNP
rs1376036100 195 dbSNP
rs1291961810 201 dbSNP
rs1457616314 206 dbSNP
rs1044866892 220 dbSNP
rs1411469041 222 dbSNP
rs904570942 223 dbSNP
rs1354525598 233 dbSNP
rs1455769270 234 dbSNP
rs1409644134 236 dbSNP
rs1181427467 237 dbSNP
rs1419417499 239 dbSNP
rs1245439519 240 dbSNP
rs935963530 242 dbSNP
rs1337599363 243 dbSNP
rs1053637181 246 dbSNP
rs1487960386 251 dbSNP
rs1273503817 264 dbSNP
rs1215007075 266 dbSNP
rs142372744 277 dbSNP
rs15351 278 dbSNP
rs1268023991 288 dbSNP
rs1009830797 292 dbSNP
rs1319055395 295 dbSNP
rs1299662967 302 dbSNP
rs1386364304 304 dbSNP
rs371796804 305 dbSNP
rs1328239893 308 dbSNP
rs1432962922 311 dbSNP
rs1344621433 312 dbSNP
rs868266117 313 dbSNP
rs562646394 314 dbSNP
rs990394448 317 dbSNP
rs1486164948 320 dbSNP
rs796159921 322 dbSNP
rs534733325 325 dbSNP
rs996646224 332 dbSNP
rs1253219143 341 dbSNP
rs1195159153 343 dbSNP
rs1028075771 354 dbSNP
rs1246905898 357 dbSNP
rs952362235 361 dbSNP
rs983754653 364 dbSNP
rs1254828628 372 dbSNP
rs1166772986 378 dbSNP
rs1232969237 378 dbSNP
rs1390206551 379 dbSNP
rs1226499473 381 dbSNP
rs1431271658 382 dbSNP
rs1015867868 387 dbSNP
rs961626588 388 dbSNP
rs1382644226 390 dbSNP
rs546694561 392 dbSNP
rs571712952 396 dbSNP
rs539230166 398 dbSNP
rs867903069 399 dbSNP
rs1175075474 401 dbSNP
rs1447298989 401 dbSNP
rs6711750 403 dbSNP
rs1193273739 404 dbSNP
rs542611069 406 dbSNP
rs1254658584 407 dbSNP
rs926003757 410 dbSNP
rs936014197 419 dbSNP
rs1282935879 427 dbSNP
rs1429890230 430 dbSNP
rs1203210023 431 dbSNP
rs1298450528 432 dbSNP
rs1367371874 437 dbSNP
rs1271054365 438 dbSNP
rs1229679322 458 dbSNP
rs1053024782 464 dbSNP
rs1232376902 465 dbSNP
rs536237196 467 dbSNP
rs1279873920 471 dbSNP
rs866919338 473 dbSNP
rs1375773820 478 dbSNP
rs1314498025 479 dbSNP
rs1427660599 482 dbSNP
rs1346217852 485 dbSNP
rs1168185796 489 dbSNP
rs1476090835 490 dbSNP
rs1202519257 493 dbSNP
rs1282815268 494 dbSNP
rs913204821 506 dbSNP
rs184837848 508 dbSNP
rs1187391928 509 dbSNP
rs945343846 513 dbSNP
rs1259962509 515 dbSNP
rs572981137 516 dbSNP
rs1446960833 519 dbSNP
rs1482963105 520 dbSNP
rs1041354002 531 dbSNP
rs1197813121 540 dbSNP
rs1354284705 542 dbSNP
rs540302323 544 dbSNP
rs1264952628 549 dbSNP
rs901047641 550 dbSNP
rs144911618 553 dbSNP
rs189711755 557 dbSNP
rs1407740658 563 dbSNP
rs1329069013 564 dbSNP
rs1411323189 566 dbSNP
rs888167879 569 dbSNP
rs545194929 570 dbSNP
rs1394079550 571 dbSNP
rs1180702708 574 dbSNP
rs1466395839 575 dbSNP
rs1233843420 581 dbSNP
rs1174140129 582 dbSNP
rs1382451569 588 dbSNP
rs1267022322 589 dbSNP
rs1214387799 590 dbSNP
rs1400054167 590 dbSNP
rs1337103806 591 dbSNP
rs1321062296 592 dbSNP
rs1226528403 593 dbSNP
rs1391009441 593 dbSNP
rs1438785764 595 dbSNP
rs1279932835 600 dbSNP
rs1302500481 604 dbSNP
rs1328990250 607 dbSNP
rs748649521 610 dbSNP
rs1331864210 614 dbSNP
rs1396076361 617 dbSNP
rs758737664 618 dbSNP
rs560991019 620 dbSNP
rs1278165339 625 dbSNP
rs1014546284 632 dbSNP
rs1024938276 641 dbSNP
rs1477278722 645 dbSNP
rs1377263991 647 dbSNP
rs1194545491 650 dbSNP
rs1469847286 654 dbSNP
rs1350329421 656 dbSNP
rs1206678255 662 dbSNP
rs535170379 672 dbSNP
rs771181010 679 dbSNP
rs1342668115 682 dbSNP
rs1302190722 683 dbSNP
rs970259542 685 dbSNP
rs1465902185 690 dbSNP
rs1867880 693 dbSNP
rs1211243117 694 dbSNP
rs1429503543 697 dbSNP
rs1346298077 701 dbSNP
rs980209264 712 dbSNP
rs1433435376 713 dbSNP
rs1394885634 715 dbSNP
rs1174440135 717 dbSNP
rs1455753618 725 dbSNP
rs528550929 726 dbSNP
rs1185999529 729 dbSNP
rs926054748 742 dbSNP
rs1242607591 744 dbSNP
rs957473607 753 dbSNP
rs1440434587 764 dbSNP
rs1472139632 773 dbSNP
rs191347244 775 dbSNP
rs1211074871 778 dbSNP
rs1349598237 782 dbSNP
rs1390710350 790 dbSNP
rs988841637 792 dbSNP
rs913267650 793 dbSNP
rs1362093910 794 dbSNP
rs1459975102 798 dbSNP
rs1446487539 802 dbSNP
rs1375156011 803 dbSNP
rs1313871355 805 dbSNP
rs1437043321 807 dbSNP
rs1325336696 809 dbSNP
rs1368931892 813 dbSNP
rs1170067959 814 dbSNP
rs944702983 816 dbSNP
rs1388750477 821 dbSNP
rs1474188092 825 dbSNP
rs1188379943 828 dbSNP
rs1256810184 828 dbSNP
rs1486559712 831 dbSNP
rs1249232250 838 dbSNP
rs1050108 845 dbSNP
rs1040972738 847 dbSNP
rs1189695949 848 dbSNP
rs1307513466 857 dbSNP
rs1274512537 858 dbSNP
rs563435482 866 dbSNP
rs922479891 874 dbSNP
rs1229375817 877 dbSNP
rs1290796235 879 dbSNP
rs1294499613 879 dbSNP
rs1333378698 882 dbSNP
rs1233158991 886 dbSNP
rs932486523 887 dbSNP
rs1005336170 890 dbSNP
rs1461045183 890 dbSNP
rs550275542 890 dbSNP
rs888264150 890 dbSNP
rs1417054644 892 dbSNP
rs11537669 901 dbSNP
rs1165619589 903 dbSNP
rs1488483037 905 dbSNP
rs1248174300 914 dbSNP
rs1176207786 915 dbSNP
rs1037185525 918 dbSNP
rs1211335116 922 dbSNP
rs1234315806 924 dbSNP
rs1211262858 926 dbSNP
rs778027496 927 dbSNP
rs1482634166 928 dbSNP
rs745453983 936 dbSNP
rs1024572825 937 dbSNP
rs1327454679 940 dbSNP
rs1306742962 945 dbSNP
rs1474196562 949 dbSNP
rs970689927 950 dbSNP
rs1001721327 958 dbSNP
rs1375788347 958 dbSNP
rs1440227577 969 dbSNP
rs1369199015 975 dbSNP
rs1395355837 978 dbSNP
rs1459501859 979 dbSNP
rs780961774 979 dbSNP
rs1033168197 981 dbSNP
rs1166426235 984 dbSNP
rs957528509 995 dbSNP
rs1361776737 1001 dbSNP
rs1410624452 1022 dbSNP
rs530858793 1031 dbSNP
rs1310265555 1033 dbSNP
rs193153527 1034 dbSNP
rs1409676015 1045 dbSNP
rs1353893910 1046 dbSNP
rs1191402246 1053 dbSNP
rs1414711596 1054 dbSNP
rs1253100585 1058 dbSNP
rs1020750494 1062 dbSNP
rs377450065 1063 dbSNP
rs1260713803 1066 dbSNP
rs1240186938 1068 dbSNP
rs769445498 1069 dbSNP
rs1246324876 1074 dbSNP
rs1301478989 1081 dbSNP
rs528107494 1083 dbSNP
rs371101314 1084 dbSNP
rs1371743567 1087 dbSNP
rs1205363146 1091 dbSNP
rs1382671421 1096 dbSNP
rs976460747 1096 dbSNP
rs922563709 1108 dbSNP
rs1484566600 1115 dbSNP
rs1454093295 1117 dbSNP
rs1346775237 1122 dbSNP
rs1171306013 1123 dbSNP
rs1453427925 1123 dbSNP
rs932581248 1141 dbSNP
rs1194943870 1144 dbSNP
rs985362499 1155 dbSNP
rs370014861 1166 dbSNP
rs909754447 1166 dbSNP
rs1036790776 1167 dbSNP
rs1348859473 1167 dbSNP
rs886056355 1167 dbSNP
rs1305968246 1169 dbSNP
rs896867660 1170 dbSNP
rs1325970199 1172 dbSNP
rs1382731073 1178 dbSNP
rs571321000 1178 dbSNP
rs1363731984 1179 dbSNP
rs1181271111 1180 dbSNP
rs1256752195 1182 dbSNP
rs1425680790 1184 dbSNP
rs1168466588 1185 dbSNP
rs1459993932 1190 dbSNP
rs1372026232 1191 dbSNP
rs1194450449 1192 dbSNP
rs1430810005 1200 dbSNP
rs749255803 1201 dbSNP
rs1437425988 1207 dbSNP
rs1430661455 1210 dbSNP
rs1486229480 1213 dbSNP
rs538854890 1218 dbSNP
rs1282699198 1233 dbSNP
rs1194325563 1234 dbSNP
rs905521973 1235 dbSNP
rs15352 1248 dbSNP
rs1001773700 1252 dbSNP
rs1033223988 1253 dbSNP
rs759788569 1268 dbSNP
rs1465842371 1270 dbSNP
rs1303982107 1275 dbSNP
rs1010329050 1283 dbSNP
rs1020382748 1290 dbSNP
rs1355892117 1295 dbSNP
rs1335730437 1302 dbSNP
rs1063503 1304 dbSNP
rs1389337847 1308 dbSNP
rs551196531 1314 dbSNP
rs867667606 1315 dbSNP
rs149495444 1323 dbSNP
rs1164880630 1327 dbSNP
rs1260077362 1345 dbSNP
rs976174967 1345 dbSNP
rs914377375 1346 dbSNP
rs1179848329 1350 dbSNP
rs1029437962 1351 dbSNP
rs3209936 1357 dbSNP
rs953351844 1365 dbSNP
rs3209940 1367 dbSNP
rs1332821220 1373 dbSNP
rs1276321340 1384 dbSNP
rs985377047 1386 dbSNP
rs909765667 1389 dbSNP
rs1335176210 1393 dbSNP
rs1285740639 1395 dbSNP
rs1236696498 1402 dbSNP
rs1334790056 1418 dbSNP
rs886056356 1419 dbSNP
rs1345531861 1420 dbSNP
rs1448306589 1425 dbSNP
rs1391688425 1430 dbSNP
rs377381751 1437 dbSNP
rs972954833 1440 dbSNP
rs1484208583 1443 dbSNP
rs1157180478 1444 dbSNP
rs1469993083 1452 dbSNP
rs1364569447 1466 dbSNP
rs554866641 1474 dbSNP
rs949866556 1482 dbSNP
rs1252467856 1497 dbSNP
rs1450161562 1499 dbSNP
rs1190813876 1503 dbSNP
rs1468853701 1507 dbSNP
rs1292008040 1509 dbSNP
rs1203132381 1510 dbSNP
rs772325888 1510 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4144.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000306434.3 | 3UTR | AUAACUUUUUUUUUUCUUUAUAAGAAAGCCUGAGUACUCCACACUGCACAAUAACUCCUCCCAGGGUUUUAACUUUGUUUUAUUUUCAAAACCAGGUCCAAUGAGCUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000306434.3 | 3UTR | UAACUUUUUUUUUUCUUUAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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