pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol KPNA3   
Synonyms IPOA4, SRP1, SRP1gamma, SRP4, hSRP1
Description karyopherin subunit alpha 3
Transcript NM_002267   
Expression
Putative miRNA Targets on KPNA3
3'UTR of KPNA3
(miRNA target sites are highlighted)
>KPNA3|NM_002267|3'UTR
   1 ATTCAGTTGAGTGCAGCATCTTTCCCACATTCAATATGAAGCACCACCAGATGGCTACCAAATGATAAGAACAACAGCAA
  81 CAAAAGGCTCCAAAACACACATGCCTCTTTGTTTTGATGCTTCTAAAGCAAGCCATGTCTCAGTCACTTTGCAGTTGCCA
 161 AAAGTCACTATCACATGGACTGTAAATGCATATGCATGATTTCCTAAACTGTTTTAGAACTCTCCTTAACAATCTCAACT
 241 ACCCTATTTTTCCCTGTTCCCTGGTGCCACAGGCTGACAACTGCAGTCTCCAGTTTAGAATAAATATTCCATAGTGGTGA
 321 CATGTCAGCTGCCCACTGATACTCCTTTGGAAAATGGTGCGCTGTGGATCAAGACACTTTGGTATGATGCATATACAAGT
 401 TGGAAGACTAAAGAGGTGCAGTGTGATCTGAGCCTCCATCATTGTCCTCCACAAACATATTTTCATATTCTTTATGTGGA
 481 AGAATAGATTTTAAAGTACAAGCCAAATGATTTTCATTGGTGGAACTGACACAAAAAAAGTAACTTAAAAACAAGAAACT
 561 TGGTTATTGAATAAACAGATAAGTTTAAAAAAAAAAAAAAACTACTTCATCTACCAGTAATTGATGTGTTTATTATCTGC
 641 CTCAGAAGCCAGGGTTGGAGGAAGAACTTTAGATATGGATATTAATGCTTTTGCCATTATACCTAATTTTTGAGAACAGC
 721 AAGCCCTATTTGACCACTCTCTTCAGCCTGTGTGTTCCTGCTGTTTTGAAGTAATCAAATGCTGTGCATGGTATTTTACC
 801 TGAGCTGCAACCTGTTATGGACTTGAACTTCTGTTTAAGTTGAAAGCAAGAGTCCCTGAGTATAAAGGAAAAACAGCAAA
 881 ACAAAAAGCAAACAAAAAAAAACTGCAAAAGTCTAAAATACCCATTGGTGATGTTTTTTAAAAAAATCTTGCTTTCAGCT
 961 TTCAGGAGTTAATATTCTTTGTTTTAATTTGATAATTGGATATGGTTGATTTATATTGGGTTTAAACTGTGGAGCTTTCA
1041 TGTTTACTGTAATTTAGTCTTAAAATATTTTTTACTTAGTAACCAGTGCTTTTGATAATGTGGTTGGCAACAAACCAGCA
1121 ACTATTTAGAAGTGTCATAAGAGTTCATTCTTTGAGTATTGGGAAAGTTAATTCAGATCCTACTCAAAAAGCATCTTCAC
1201 ATATTAAAAGATTCAGACAGGGATCTGTGTAGAGGAGTAATTTGCAGTTATTTAACATAAACCTGATTTGCAGTGATCTC
1281 TAAGTAATTCTGCAAAATCCGGTATTACTATGTCAAGTTATTGCTTTTGGTAAATTGTCTGACCCAGTTATTAATGAAAG
1361 AATATGGATTTAAAAATTTTTAAACTAAATAATTTGTGCTGTCACAGAAATGGTATTGTTGCTCTTGTTTACTGGGTATA
1441 ATTTCCCAATGCATTGATGTGAAGGGATAGAAAATCTAAACTAATTTAGTTATCCATTGGGGGGTGTATTTACTGTGATG
1521 AAGATGAGACAGATGCCATCAGAGCTTTGTGAATCAGCTGGGGTGTTTTCACTGATAAACAACACATAGCAGGTGTGCAT
1601 TCATTACAAATATATGTATCTGCCAAGGTGGAGCCACTTTAAAGAGTGAGTTTTGTCTTGTATCTAAAGTGGATACAAGC
1681 GTATGTTTAAACTGCAAGATTTTTACTTGCTAGAGAATCTGTTTTAATATAGTGGTTTGGCCTCTGATTATTTATAGGTT
1761 TTATAAATTTTAGAATCAATTTCTCTTTAAGGTGGCTCAGATTTTTCAACTCTTGTGCACATAAAATTGAGTTGAAGTTC
1841 ATTGTGCCTTTTTTTCTTTATCCAAATTTTGAGTTAAAGCTTCATATGGTAACTGCATCCTGTTCGGACACTATAGTCTA
1921 AATTTTTGAAACTGTGTGGTGTTCGCTAAAAGTAGGAATAACAACGTAAAAGCTAATTAAGGTCACAAACTTCGGTGAAA
2001 CCCTTAAAAGTCCAAATCTTCTTGATATTGTGAACCGTACCCCTTCCAGTTTAGTTTCTTCTGGACTTTCCTTACTTAAC
2081 TGACAGTTACCTTTTAAAATTTGCACACATTATGATTAAAATTGGGCCTCTACTGTGATGATTCCTATTTCCTCTCATGT
2161 TTTAAAGTGCAAACTAACATTTAAGTGAACATTAGCATCAAGTAGTGCAGACACTTGTATGCATTTCCTTGATTCAATTT
2241 GTGACCTTACCAGTTTTGAATTGGAATTGCACCATTTCGTAGATAAAGGAAACTAAGTATATTGCTGCACTTTTAAGTTT
2321 TCAAAACAGTGTTTAAAAATTGCATTGTTATTTTTTTTTAAACTCAGTTTAAAAAGACTAAAACGTTCTTTCAAAAGAGG
2401 CATCTAAATGTGTTCCTAATTTTGTATATGGGCTTAGGTTTTGTAACCAATAAAAAAAGCTGCTATCAAATATGATAAAA
2481 CATTGAAAACTTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acucuguccaagUACGACGAUa 5'
                      | ||||||| 
Target 5' aaccaataaaaaAAGCTGCTAt 3'
2445 - 2466 142.00 -10.10
2
miRNA  3' acUCUGUC---CAAGUACGACGAua 5'
            || | |   |||| |||||:|  
Target 5' tcAGCCTGTGTGTTCCTGCTGTTtt 3'
743 - 767 128.00 -11.61
3
miRNA  3' acucuguccAAGUACGACGAUa 5'
                   || ||||| ||| 
Target 5' ctctttgttTTGATGCTTCTAa 3'
105 - 126 125.00 -6.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31480576 4 COSMIC
COSN30119144 11 COSMIC
COSN508941 19 COSMIC
COSN30181618 20 COSMIC
COSN30149013 32 COSMIC
COSN31482737 69 COSMIC
COSN26519661 100 COSMIC
COSN5339043 221 COSMIC
COSN19668045 241 COSMIC
COSN30561667 259 COSMIC
COSN31610976 322 COSMIC
COSN30143901 412 COSMIC
COSN31602633 428 COSMIC
COSN16980301 524 COSMIC
COSN20110728 583 COSMIC
COSN28803543 587 COSMIC
COSN31485249 645 COSMIC
COSN6210959 681 COSMIC
COSN31555322 787 COSMIC
COSN31523697 887 COSMIC
COSN19659765 893 COSMIC
COSN31579515 1067 COSMIC
COSN32141736 1176 COSMIC
COSN28645090 1263 COSMIC
COSN1611514 1290 COSMIC
COSN30543133 1294 COSMIC
COSN31589743 1308 COSMIC
COSN31608156 1379 COSMIC
COSN31594576 1470 COSMIC
COSN31583059 1546 COSMIC
COSN24304765 1598 COSMIC
COSN31563873 1740 COSMIC
COSN31522842 1901 COSMIC
COSN19658389 1905 COSMIC
COSN6210958 1945 COSMIC
COSN31485319 2021 COSMIC
COSN26559662 2036 COSMIC
COSN26639642 2036 COSMIC
COSN26564269 2104 COSMIC
COSN23768489 2269 COSMIC
COSN26669767 2297 COSMIC
COSN6210957 2308 COSMIC
COSN31546424 2356 COSMIC
COSN19656558 2359 COSMIC
COSN26465130 2360 COSMIC
COSN26576577 2397 COSMIC
COSN31569198 2399 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777792245 1 dbSNP
rs935852517 4 dbSNP
rs903082890 6 dbSNP
rs757811823 10 dbSNP
rs752226078 18 dbSNP
rs1183971524 20 dbSNP
rs1480717418 24 dbSNP
rs74626362 25 dbSNP
rs949710021 32 dbSNP
rs1272632772 34 dbSNP
rs1343648593 37 dbSNP
rs1258574420 40 dbSNP
rs753490647 48 dbSNP
rs140590811 56 dbSNP
rs577010457 64 dbSNP
rs1216257604 69 dbSNP
rs1452495964 76 dbSNP
rs937054362 78 dbSNP
rs920370786 87 dbSNP
rs1470533058 88 dbSNP
rs949300843 90 dbSNP
rs1362320901 95 dbSNP
rs549665628 96 dbSNP
rs917869570 96 dbSNP
rs1226982706 98 dbSNP
rs973539013 100 dbSNP
rs1305105896 119 dbSNP
rs962208047 141 dbSNP
rs1365952285 145 dbSNP
rs1388201557 156 dbSNP
rs1015151225 160 dbSNP
rs1321141196 161 dbSNP
rs991137175 164 dbSNP
rs1321334403 170 dbSNP
rs541607218 170 dbSNP
rs959109903 190 dbSNP
rs561195858 193 dbSNP
rs1411646993 209 dbSNP
rs988122056 211 dbSNP
rs955025128 214 dbSNP
rs1196981614 226 dbSNP
rs766670710 227 dbSNP
rs146735944 230 dbSNP
rs1243039817 232 dbSNP
rs1357933015 236 dbSNP
rs527819281 238 dbSNP
rs762275825 243 dbSNP
rs1216680079 244 dbSNP
rs1184000391 245 dbSNP
rs1342595589 246 dbSNP
rs867909820 249 dbSNP
rs1381281255 250 dbSNP
rs1385678209 252 dbSNP
rs1360671000 253 dbSNP
rs1266301164 255 dbSNP
rs997661287 256 dbSNP
rs902003914 257 dbSNP
rs1159925751 262 dbSNP
rs774560885 270 dbSNP
rs1384544196 271 dbSNP
rs1208396539 277 dbSNP
rs1164073727 279 dbSNP
rs778353042 280 dbSNP
rs1240125181 283 dbSNP
rs1191379544 287 dbSNP
rs1446636901 289 dbSNP
rs1264092408 290 dbSNP
rs1218907381 296 dbSNP
rs1489866370 297 dbSNP
rs1291730012 304 dbSNP
rs1446742767 309 dbSNP
rs560487444 310 dbSNP
rs1358962672 322 dbSNP
rs9568310 327 dbSNP
rs1265092085 330 dbSNP
rs545464552 332 dbSNP
rs1282025119 335 dbSNP
rs1219513235 344 dbSNP
rs578238192 360 dbSNP
rs61959958 361 dbSNP
rs929419736 371 dbSNP
rs1243619085 372 dbSNP
rs897888152 380 dbSNP
rs1045835743 381 dbSNP
rs949234535 385 dbSNP
rs950004580 396 dbSNP
rs769131763 402 dbSNP
rs1444057072 403 dbSNP
rs1351058544 409 dbSNP
rs1172329348 413 dbSNP
rs1397535773 420 dbSNP
rs7446 421 dbSNP
rs780706805 426 dbSNP
rs1429193767 440 dbSNP
rs1368868466 441 dbSNP
rs754719058 446 dbSNP
rs990756579 463 dbSNP
rs756027747 465 dbSNP
rs937003534 468 dbSNP
rs1256352390 470 dbSNP
rs1317399675 473 dbSNP
rs75765320 475 dbSNP
rs187217653 476 dbSNP
rs377552703 483 dbSNP
rs535926783 485 dbSNP
rs940456678 486 dbSNP
rs1180021810 487 dbSNP
rs908034366 501 dbSNP
rs979486061 540 dbSNP
rs1428848758 553 dbSNP
rs987681635 563 dbSNP
rs1182003755 566 dbSNP
rs1482357103 568 dbSNP
rs1238760617 577 dbSNP
rs1210180658 578 dbSNP
rs1311283947 580 dbSNP
rs966334033 582 dbSNP
rs1225271399 583 dbSNP
rs1176614055 586 dbSNP
rs35124761 587 dbSNP
rs397961846 587 dbSNP
rs755335 587 dbSNP
rs955118391 588 dbSNP
rs1287487993 598 dbSNP
rs1340206022 600 dbSNP
rs1207972191 602 dbSNP
rs1224340829 602 dbSNP
rs1303560529 602 dbSNP
rs1491544945 602 dbSNP
rs34283770 602 dbSNP
rs796468184 602 dbSNP
rs1491165777 603 dbSNP
rs1260765308 604 dbSNP
rs571850747 610 dbSNP
rs1199674909 613 dbSNP
rs1426713659 623 dbSNP
rs974693799 635 dbSNP
rs1430912998 637 dbSNP
rs543581006 655 dbSNP
rs1364821568 657 dbSNP
rs958032159 673 dbSNP
rs1360262016 675 dbSNP
rs1304707012 683 dbSNP
rs1405823140 684 dbSNP
rs1295464074 690 dbSNP
rs1448795127 700 dbSNP
rs966219663 703 dbSNP
rs1032352433 715 dbSNP
rs1300513382 717 dbSNP
rs554159680 717 dbSNP
rs1242212812 726 dbSNP
rs61959940 728 dbSNP
rs561096760 732 dbSNP
rs1007816644 735 dbSNP
rs952366773 739 dbSNP
rs538253230 741 dbSNP
rs1020517882 745 dbSNP
rs1250597529 758 dbSNP
rs148702448 761 dbSNP
rs1157349557 780 dbSNP
rs1380106742 782 dbSNP
rs1459158959 785 dbSNP
rs1167188261 787 dbSNP
rs895693393 788 dbSNP
rs750259665 789 dbSNP
rs1413242713 790 dbSNP
rs556441461 801 dbSNP
rs36039931 805 dbSNP
rs540841936 816 dbSNP
rs898825020 818 dbSNP
rs1037412151 823 dbSNP
rs537777297 833 dbSNP
rs1306938698 841 dbSNP
rs1416549879 847 dbSNP
rs897821299 849 dbSNP
rs1291585973 852 dbSNP
rs1045887865 855 dbSNP
rs1181960131 862 dbSNP
rs1220344104 864 dbSNP
rs1238297042 865 dbSNP
rs1458684517 885 dbSNP
rs1482612248 888 dbSNP
rs1235391605 889 dbSNP
rs1177334555 892 dbSNP
rs1210283628 893 dbSNP
rs1014308138 899 dbSNP
rs940404395 902 dbSNP
rs1055335972 903 dbSNP
rs1412064421 903 dbSNP
rs937959338 903 dbSNP
rs1171362512 904 dbSNP
rs181733713 907 dbSNP
rs1226317896 908 dbSNP
rs1336902775 913 dbSNP
rs1052337026 915 dbSNP
rs1043639224 916 dbSNP
rs933524887 917 dbSNP
rs913569503 921 dbSNP
rs1301160847 926 dbSNP
rs549237846 929 dbSNP
rs975808341 935 dbSNP
rs1437617563 939 dbSNP
rs922136377 940 dbSNP
rs1320351788 945 dbSNP
rs761239313 947 dbSNP
rs910734699 947 dbSNP
rs1196135123 956 dbSNP
rs1256861667 961 dbSNP
rs760655455 964 dbSNP
rs1246825175 966 dbSNP
rs1212833872 979 dbSNP
rs986681451 985 dbSNP
rs1472653564 1005 dbSNP
rs1455932120 1008 dbSNP
rs952227882 1009 dbSNP
rs1425980837 1011 dbSNP
rs1028356738 1024 dbSNP
rs1166022794 1030 dbSNP
rs1423736817 1040 dbSNP
rs1365958650 1042 dbSNP
rs1415009428 1062 dbSNP
rs1411066242 1075 dbSNP
rs993747977 1084 dbSNP
rs958314801 1089 dbSNP
rs1446939515 1091 dbSNP
rs752886453 1095 dbSNP
rs1189910469 1096 dbSNP
rs767692632 1102 dbSNP
rs1024276324 1110 dbSNP
rs527782339 1115 dbSNP
rs1277076970 1122 dbSNP
rs1246982189 1125 dbSNP
rs1014359095 1128 dbSNP
rs566974676 1131 dbSNP
rs551757437 1137 dbSNP
rs1002473979 1141 dbSNP
rs903679182 1156 dbSNP
rs533376840 1180 dbSNP
rs1014480721 1187 dbSNP
rs1043666418 1191 dbSNP
rs1193174362 1192 dbSNP
rs945258182 1195 dbSNP
rs913579356 1200 dbSNP
rs145097959 1201 dbSNP
rs1220832250 1215 dbSNP
rs1319842432 1216 dbSNP
rs959907294 1218 dbSNP
rs1313074191 1222 dbSNP
rs1434019001 1227 dbSNP
rs149947266 1229 dbSNP
rs1366239528 1231 dbSNP
rs1362199536 1246 dbSNP
rs1397798183 1251 dbSNP
rs1297162262 1257 dbSNP
rs748678 1263 dbSNP
rs1433353589 1264 dbSNP
rs1273583925 1265 dbSNP
rs1345010396 1272 dbSNP
rs1393414368 1277 dbSNP
rs763285620 1278 dbSNP
rs1351910774 1282 dbSNP
rs1294472761 1289 dbSNP
rs1457883607 1290 dbSNP
rs1268246390 1293 dbSNP
rs1001450952 1300 dbSNP
rs985885580 1301 dbSNP
rs568619971 1310 dbSNP
rs1037359521 1321 dbSNP
rs1169966358 1324 dbSNP
rs1159150948 1328 dbSNP
rs1381977741 1329 dbSNP
rs920733657 1332 dbSNP
rs972316876 1335 dbSNP
rs1389187202 1339 dbSNP
rs775786299 1342 dbSNP
rs1024328612 1347 dbSNP
rs886166869 1360 dbSNP
rs562299249 1364 dbSNP
rs1312036598 1366 dbSNP
rs147345306 1376 dbSNP
rs1190389960 1381 dbSNP
rs538052099 1382 dbSNP
rs1358807010 1390 dbSNP
rs553462331 1394 dbSNP
rs958718893 1398 dbSNP
rs1487488769 1411 dbSNP
rs922113799 1412 dbSNP
rs1207411579 1413 dbSNP
rs544573431 1414 dbSNP
rs1000285546 1440 dbSNP
rs1437596954 1446 dbSNP
rs1180904927 1448 dbSNP
rs1274006210 1451 dbSNP
rs1039215137 1453 dbSNP
rs771222360 1457 dbSNP
rs936904949 1459 dbSNP
rs1465636905 1460 dbSNP
rs1333024298 1463 dbSNP
rs1333956379 1464 dbSNP
rs1375412703 1466 dbSNP
rs1302455241 1488 dbSNP
rs1313940773 1488 dbSNP
rs903689221 1492 dbSNP
rs763392276 1504 dbSNP
rs1009454104 1505 dbSNP
rs1292852729 1505 dbSNP
rs1200535414 1507 dbSNP
rs773415899 1512 dbSNP
rs1386520369 1523 dbSNP
rs1256232843 1526 dbSNP
rs892361460 1530 dbSNP
rs1195136337 1536 dbSNP
rs925566541 1547 dbSNP
rs558533365 1563 dbSNP
rs1184980726 1564 dbSNP
rs879154659 1578 dbSNP
rs888784830 1583 dbSNP
rs1477938927 1588 dbSNP
rs1369476661 1594 dbSNP
rs1397469564 1595 dbSNP
rs1461954384 1610 dbSNP
rs978034263 1613 dbSNP
rs770088288 1618 dbSNP
rs1394596012 1633 dbSNP
rs1166160397 1642 dbSNP
rs1312507199 1642 dbSNP
rs1341436681 1643 dbSNP
rs966753436 1644 dbSNP
rs577541570 1646 dbSNP
rs1276441453 1653 dbSNP
rs1467306214 1653 dbSNP
rs142767510 1655 dbSNP
rs1256455217 1664 dbSNP
rs1484114560 1681 dbSNP
rs1175131491 1684 dbSNP
rs1256520535 1700 dbSNP
rs1431182696 1712 dbSNP
rs1488438812 1734 dbSNP
rs930375494 1740 dbSNP
rs1420874969 1741 dbSNP
rs1427362040 1746 dbSNP
rs920773073 1750 dbSNP
rs972201302 1752 dbSNP
rs1464980395 1753 dbSNP
rs992247709 1754 dbSNP
rs1253892399 1756 dbSNP
rs1402126105 1783 dbSNP
rs959761779 1787 dbSNP
rs1182892053 1794 dbSNP
rs1361373364 1798 dbSNP
rs940819137 1814 dbSNP
rs1303494637 1815 dbSNP
rs41284804 1816 dbSNP
rs979962728 1837 dbSNP
rs1231958361 1841 dbSNP
rs567494015 1858 dbSNP
rs959001367 1863 dbSNP
rs1016209995 1866 dbSNP
rs1004918835 1868 dbSNP
rs747582285 1879 dbSNP
rs886111928 1887 dbSNP
rs1485264068 1896 dbSNP
rs1256756948 1906 dbSNP
rs1268824857 1910 dbSNP
rs1232997866 1911 dbSNP
rs1321773891 1915 dbSNP
rs1173529448 1916 dbSNP
rs140385606 1934 dbSNP
rs576873808 1936 dbSNP
rs1009380462 1939 dbSNP
rs1157084955 1939 dbSNP
rs1350390260 1941 dbSNP
rs768304858 1944 dbSNP
rs892287863 1945 dbSNP
rs4942861 1946 dbSNP
rs746620241 1965 dbSNP
rs1819191 1966 dbSNP
rs936854433 1971 dbSNP
rs1281881107 1993 dbSNP
rs888786942 1993 dbSNP
rs141523087 1994 dbSNP
rs1221822471 2001 dbSNP
rs930406258 2005 dbSNP
rs1159597723 2018 dbSNP
rs1472245811 2024 dbSNP
rs1193569996 2028 dbSNP
rs1042621308 2029 dbSNP
rs1442079312 2030 dbSNP
rs552576381 2032 dbSNP
rs898936432 2036 dbSNP
rs945653074 2037 dbSNP
rs1036098537 2039 dbSNP
rs917921679 2041 dbSNP
rs992590698 2048 dbSNP
rs1460934643 2049 dbSNP
rs1444141312 2056 dbSNP
rs938095116 2069 dbSNP
rs926706399 2083 dbSNP
rs1200164749 2086 dbSNP
rs1448887475 2087 dbSNP
rs979907100 2100 dbSNP
rs17073314 2103 dbSNP
rs1228566284 2104 dbSNP
rs1043729 2105 dbSNP
rs983382785 2106 dbSNP
rs1278245389 2107 dbSNP
rs950734401 2112 dbSNP
rs1202998190 2113 dbSNP
rs1246367385 2121 dbSNP
rs913348244 2130 dbSNP
rs988848379 2132 dbSNP
rs569222159 2134 dbSNP
rs1450071354 2137 dbSNP
rs1475001458 2141 dbSNP
rs1171548224 2147 dbSNP
rs1425843795 2148 dbSNP
rs1467162030 2151 dbSNP
rs1029982106 2158 dbSNP
rs1390343865 2167 dbSNP
rs1018699833 2170 dbSNP
rs1353732760 2172 dbSNP
rs1448395686 2175 dbSNP
rs1304361806 2193 dbSNP
rs373810281 2195 dbSNP
rs1232273978 2202 dbSNP
rs1456460221 2209 dbSNP
rs1278322091 2217 dbSNP
rs1319334044 2218 dbSNP
rs757256206 2220 dbSNP
rs1213346407 2227 dbSNP
rs1382710271 2235 dbSNP
rs1009242304 2237 dbSNP
rs1473085543 2243 dbSNP
rs1443360990 2260 dbSNP
rs1212765624 2269 dbSNP
rs1255833901 2270 dbSNP
rs1017326348 2273 dbSNP
rs1000949535 2278 dbSNP
rs904038095 2279 dbSNP
rs1425917253 2283 dbSNP
rs1186908799 2306 dbSNP
rs1042988930 2308 dbSNP
rs994539919 2310 dbSNP
rs945629465 2313 dbSNP
rs1209775167 2315 dbSNP
rs898821839 2328 dbSNP
rs1036151141 2330 dbSNP
rs3720 2333 dbSNP
rs1056439171 2338 dbSNP
rs1341848016 2340 dbSNP
rs895997788 2350 dbSNP
rs1057273500 2351 dbSNP
rs937609667 2351 dbSNP
rs1212210569 2353 dbSNP
rs927593196 2359 dbSNP
rs1043689677 2360 dbSNP
rs938026908 2360 dbSNP
rs947424899 2360 dbSNP
rs1265539589 2363 dbSNP
rs1192632211 2385 dbSNP
rs926652592 2389 dbSNP
rs1283133773 2392 dbSNP
rs913233525 2396 dbSNP
rs974159663 2400 dbSNP
rs965405107 2410 dbSNP
rs1243080304 2415 dbSNP
rs1366941841 2419 dbSNP
rs1158877120 2428 dbSNP
rs941463096 2430 dbSNP
rs1386772328 2443 dbSNP
rs529588693 2445 dbSNP
rs770625044 2452 dbSNP
rs1297795595 2457 dbSNP
rs1317082972 2459 dbSNP
rs1434092741 2459 dbSNP
rs1331150326 2460 dbSNP
rs1324540792 2474 dbSNP
rs983716026 2480 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 3839.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000261667.3 | 3UTR | UAACCAAUAAAAAAAGCUGCUAUCAAAUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000261667.3 | 3UTR | UAACCAAUAAAAAAAGCUGCUAUCAAAUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000261667.3 | 3UTR | UAACCAAUAAAAAAAGCUGCUAUCAAAUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

Error report submission