pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol JARID2   
Synonyms JMJ
Description jumonji and AT-rich interaction domain containing 2
Transcript NM_004973   
Expression
Putative miRNA Targets on JARID2
3'UTR of JARID2
(miRNA target sites are highlighted)
>JARID2|NM_004973|3'UTR
   1 AGATGCCAACGCCCGTGGTCGATTTATATATATTTTTTTGTAATTATTATATTCTAGTTTGGAGTACTTGCTGTAGGATT
  81 CAAGCTGTCTTTGCACTAGCTCTAAAGAAGATTTTCTTCTGGTTTTAGAGAACTAATTTTGTTTTAGCATTAAACTGTTG
 161 AACTTTTTTTTGTACTTAGAAAACCTAGATACTGCAGTCAGATTTTGGAAACTGCCGTATAGTCACTGTTTTAAAAACCC
 241 CGGAGGGGCTGTATTAATTTGTATTGCCCCATGGCTGACAAAAGCCTTTTTTTTTGGTTTTGATTTTTTTTTTTTTGTAA
 321 CTGTTGGGGGGAAAAAGGCTTTTTAACCCATTTTTGAAGAGGGTGAAGTTTGGAGAACAAATTTAAAAACCATCAGTCAT
 401 GTGAGCAGATTTTTTAGAAGGGATAGGAGACACACGCGCACACACACACACACACGAAACTTGAAATGGCTTTGCTTTGG
 481 CTGTCGTCTTCTGCCGTGTGCCAGATGAGCTTGTGATCTGGGAAGCCGGGGCACCCCCGTTTTGTTTCTCTGGGCGGTTG
 561 TGGCAGCTGAAGGCGGACGTTGTTTCCTAACCATAGGTGGAACGAGGAGACGGGAGCGAGTGGGCTCTCCACCAGCACAT
 641 CACTATGCATCTGTTCCAGGAAAGAAGAAAAGCGAGCGAGGAAGACGGAAAAGACTGCCTGCCTTGGAGGGGTCACATGA
 721 GGGAGACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTGGTGCTGTTGGCTACTTTATCAAAAAACCCTT
 801 CAATAGCATCCTTAAGATTTAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAGTGATGGAAGCCGTAAGTGCTTCTTTGTCA
 881 TCGACGTGCAATCTTTCTAACATTCCATCTCCATCTCACCGCTTCTTGTTTGACACCTTCACAAGTCAGCATTAATCTTT
 961 CTTTTAAAACTTGTTTCATTTATGATCATGTAGAGAGCCACTAGGAGGCCTGCAGTTATTTTTGAATGTGAAAATGCATT
1041 TGCGTTCATCTTGTCTATTTTTTCTCTTCATGTTGTAACAAAAAGGAAAAAAGAAAAAAAAATCCCATCCCTTTTGTACA
1121 TATGCCTGTAAATTGTTTTAAATACTTGAGCCTTTTTCTCGGTGGGGGGTGGGGAGGGGGGTGAGAAGACAAGATGAAGA
1201 AAAGCCTTACATTTCAGTTTCTTCATCGGTTGGATTGGATGCTTACAGGGTTTTTCTTGTAACATTTATAAGTGCTGCTT
1281 ACATCACTGAACAACAACAAAAAAATAATAATGGAGTAGCTGTTGCCCTTCTCCGGTTGTGTGTACAGTATGTGTGGAAT
1361 AAAAAAGGGAAACTGTTTTCACAAGCTGTTCTTTGTTTCATAATTGGATTCATCAATCCCGTAGCTACCCATATTGCACT
1441 GAGCTTGCCAGTGGTGACTGCCAGGAACGTCCTATGATCCACTTTGTTGGTTGTTGTTGCAGAAGACTGAACTGTTTTGG
1521 AATATTTAACAATTACAGAAACAGTCAAGTGTTTTCCAATGTGGTTGTCCGGTTTCTATGGCCTTGCTGTGTACTTTCCC
1601 TCTTTTTGACAGTAAACTTCTGCCTATGGCTTACAGTTTGACATTTAATTTATTAGCGCTGCTCTGCACCCCTCCCTTGG
1681 GAGGGAGACTTCATGTGGTTTATTGCGAGTTTTTTGTTTACTTTTCAGGTTTGTACTACAAGGTTTAATAATAAAAACAA
1761 AGTTTTTTGGACATTTGTCTGTCTTGTGGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggccaggcauguuUGAGACGUc 5'
                       :||||||| 
Target 5' atttattagcgctGCTCTGCAc 3'
1648 - 1669 141.00 -10.20
2
miRNA  3' ggCCAGGCAUGUUUGAGACGUc 5'
            | |:|  :| : ||:|||| 
Target 5' agGATTCAAGCTGTCTTTGCAc 3'
75 - 96 132.00 -9.30
3
miRNA  3' ggCCAGGCAUGUUUGAGACGUc 5'
            ||  || :::::|||| || 
Target 5' cgGGAGCGAGTGGGCTCTCCAc 3'
611 - 632 124.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30505066 7 COSMIC
COSN30453358 8 COSMIC
COSN30129924 11 COSMIC
COSN30249272 12 COSMIC
COSN31580408 25 COSMIC
COSN26731936 33 COSMIC
COSN30509534 34 COSMIC
COSN28861987 35 COSMIC
COSN26980855 40 COSMIC
COSN31580127 43 COSMIC
COSN31558959 131 COSMIC
COSN20081090 172 COSMIC
COSN1327395 197 COSMIC
COSN30723296 296 COSMIC
COSN20102418 317 COSMIC
COSN30591685 435 COSMIC
COSN16894974 439 COSMIC
COSN30597378 445 COSMIC
COSN30656225 455 COSMIC
COSN31840646 456 COSMIC
COSN31659108 528 COSMIC
COSN28894927 711 COSMIC
COSN20590354 759 COSMIC
COSN22743434 765 COSMIC
COSN20102420 841 COSMIC
COSN6513181 843 COSMIC
COSN29306002 872 COSMIC
COSN25626704 1094 COSMIC
COSN25276486 1176 COSMIC
COSN23797402 1503 COSMIC
COSN30365511 1739 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780645267 6 dbSNP
rs1212590367 7 dbSNP
rs371187784 11 dbSNP
rs777185275 12 dbSNP
rs774963670 15 dbSNP
rs770627253 16 dbSNP
rs375076392 21 dbSNP
rs200780782 22 dbSNP
rs969714029 24 dbSNP
rs1455600620 25 dbSNP
rs1174335290 27 dbSNP
rs1360176162 28 dbSNP
rs1215162872 29 dbSNP
rs746133555 32 dbSNP
rs199748930 33 dbSNP
rs756353103 33 dbSNP
rs780606009 34 dbSNP
rs749225664 35 dbSNP
rs768761265 36 dbSNP
rs749647326 43 dbSNP
rs774355199 44 dbSNP
rs369413383 61 dbSNP
rs1249649457 62 dbSNP
rs1328088789 74 dbSNP
rs533293268 80 dbSNP
rs546461036 96 dbSNP
rs1434500833 100 dbSNP
rs1465233268 105 dbSNP
rs921039654 110 dbSNP
rs933747815 113 dbSNP
rs1378899115 114 dbSNP
rs1158550499 116 dbSNP
rs1455129717 120 dbSNP
rs1192901879 122 dbSNP
rs560259157 131 dbSNP
rs1192433452 134 dbSNP
rs1487266500 136 dbSNP
rs191326350 138 dbSNP
rs1431465023 147 dbSNP
rs1178364664 161 dbSNP
rs1318466748 161 dbSNP
rs1239338161 164 dbSNP
rs1283677374 164 dbSNP
rs1348514690 164 dbSNP
rs1378362472 166 dbSNP
rs1217570461 169 dbSNP
rs1456899420 171 dbSNP
rs1157296522 172 dbSNP
rs1289637152 172 dbSNP
rs1391245369 176 dbSNP
rs1433214790 177 dbSNP
rs1359008736 178 dbSNP
rs1436342748 180 dbSNP
rs1293406055 184 dbSNP
rs1366152659 185 dbSNP
rs1435811471 189 dbSNP
rs977012384 193 dbSNP
rs548615137 194 dbSNP
rs1301379834 195 dbSNP
rs1315874148 196 dbSNP
rs922576620 200 dbSNP
rs932643670 202 dbSNP
rs1226186998 204 dbSNP
rs1177541321 207 dbSNP
rs1430980295 211 dbSNP
rs1049808721 216 dbSNP
rs568223030 217 dbSNP
rs1186718133 218 dbSNP
rs1489107983 227 dbSNP
rs529106594 227 dbSNP
rs1215649565 230 dbSNP
rs935848310 231 dbSNP
rs1485931238 233 dbSNP
rs1257722650 235 dbSNP
rs1231031091 237 dbSNP
rs1311656501 239 dbSNP
rs893039749 241 dbSNP
rs117648702 242 dbSNP
rs761615549 243 dbSNP
rs1022769868 244 dbSNP
rs1415805044 244 dbSNP
rs1301568871 245 dbSNP
rs1466018993 245 dbSNP
rs1358053036 246 dbSNP
rs1170543983 250 dbSNP
rs1478567331 252 dbSNP
rs1014102419 254 dbSNP
rs1258071006 255 dbSNP
rs1198649676 256 dbSNP
rs1482924257 262 dbSNP
rs1244873172 266 dbSNP
rs1024177894 268 dbSNP
rs114676237 269 dbSNP
rs1257697484 272 dbSNP
rs1234171821 273 dbSNP
rs1026361417 278 dbSNP
rs141584967 285 dbSNP
rs1397554410 287 dbSNP
rs201309875 287 dbSNP
rs1472326042 292 dbSNP
rs1180256890 294 dbSNP
rs13201824 297 dbSNP
rs553408253 298 dbSNP
rs1164522780 300 dbSNP
rs1185147495 303 dbSNP
rs1180543275 304 dbSNP
rs1465320748 304 dbSNP
rs373611471 304 dbSNP
rs964940377 304 dbSNP
rs1358815453 308 dbSNP
rs1263990441 309 dbSNP
rs1244550464 310 dbSNP
rs1318008271 312 dbSNP
rs974969167 317 dbSNP
rs199633123 318 dbSNP
rs1294698037 319 dbSNP
rs1349304865 320 dbSNP
rs1407515361 321 dbSNP
rs1289784257 322 dbSNP
rs573358930 324 dbSNP
rs1330177179 326 dbSNP
rs1441102955 327 dbSNP
rs933442394 328 dbSNP
rs1364204345 332 dbSNP
rs1457243567 332 dbSNP
rs1160357754 333 dbSNP
rs1237632059 340 dbSNP
rs1437809400 340 dbSNP
rs1194357724 348 dbSNP
rs1453497145 349 dbSNP
rs1265577283 350 dbSNP
rs1027402065 355 dbSNP
rs1486385902 367 dbSNP
rs1288676754 369 dbSNP
rs1238605867 372 dbSNP
rs1307820097 374 dbSNP
rs1353627050 374 dbSNP
rs986586266 376 dbSNP
rs139720510 382 dbSNP
rs934349650 391 dbSNP
rs1323351471 392 dbSNP
rs575553003 393 dbSNP
rs892768166 393 dbSNP
rs1299874311 394 dbSNP
rs1417709221 399 dbSNP
rs1222172304 401 dbSNP
rs948650192 402 dbSNP
rs1016145857 404 dbSNP
rs1208009517 406 dbSNP
rs1376046846 407 dbSNP
rs1198409549 410 dbSNP
rs1447867438 410 dbSNP
rs1250734563 415 dbSNP
rs1265711075 418 dbSNP
rs1214925890 424 dbSNP
rs1044256706 425 dbSNP
rs907049263 425 dbSNP
rs1002660438 429 dbSNP
rs113118756 430 dbSNP
rs763081551 430 dbSNP
rs1026851798 432 dbSNP
rs1232066426 435 dbSNP
rs1491059536 435 dbSNP
rs72837837 435 dbSNP
rs558096621 436 dbSNP
rs767634210 436 dbSNP
rs1400156082 437 dbSNP
rs1473048275 437 dbSNP
rs886514608 437 dbSNP
rs577993566 438 dbSNP
rs112303618 439 dbSNP
rs1275806791 439 dbSNP
rs1441257922 439 dbSNP
rs1491163567 439 dbSNP
rs72837838 439 dbSNP
rs1491169314 440 dbSNP
rs577580610 441 dbSNP
rs964679310 442 dbSNP
rs975000559 443 dbSNP
rs540491715 444 dbSNP
rs71827860 446 dbSNP
rs1450049809 448 dbSNP
rs386406256 449 dbSNP
rs1370513838 450 dbSNP
rs1333534358 455 dbSNP
rs183041436 456 dbSNP
rs70996556 456 dbSNP
rs1465352707 461 dbSNP
rs550108499 466 dbSNP
rs544418654 476 dbSNP
rs978270144 477 dbSNP
rs936112819 478 dbSNP
rs1427223294 483 dbSNP
rs924378548 483 dbSNP
rs773084920 486 dbSNP
rs775223579 488 dbSNP
rs1370731664 492 dbSNP
rs1457808603 493 dbSNP
rs1239528572 494 dbSNP
rs114958726 496 dbSNP
rs548802745 497 dbSNP
rs762125052 501 dbSNP
rs767785298 502 dbSNP
rs1290257222 504 dbSNP
rs1354116791 505 dbSNP
rs1349571398 508 dbSNP
rs773577793 510 dbSNP
rs1286821367 511 dbSNP
rs879209306 512 dbSNP
rs914249533 516 dbSNP
rs761068212 518 dbSNP
rs1251751665 523 dbSNP
rs532656308 524 dbSNP
rs371355022 528 dbSNP
rs1379717255 529 dbSNP
rs1468823458 532 dbSNP
rs1379189328 534 dbSNP
rs1160442889 535 dbSNP
rs1409902179 536 dbSNP
rs905826616 537 dbSNP
rs530943520 539 dbSNP
rs550548571 540 dbSNP
rs1442987976 552 dbSNP
rs1047541057 553 dbSNP
rs887461501 556 dbSNP
rs1334622370 557 dbSNP
rs1439577488 564 dbSNP
rs1280870500 566 dbSNP
rs1312993790 568 dbSNP
rs1005013441 570 dbSNP
rs570480344 574 dbSNP
rs113233941 575 dbSNP
rs1337612217 576 dbSNP
rs769089368 579 dbSNP
rs961506941 579 dbSNP
rs539472375 580 dbSNP
rs756764433 585 dbSNP
rs780775172 592 dbSNP
rs1240780716 594 dbSNP
rs1303726419 595 dbSNP
rs745552443 597 dbSNP
rs1233729308 598 dbSNP
rs1474987363 599 dbSNP
rs1164015845 600 dbSNP
rs1239542524 602 dbSNP
rs1368453870 603 dbSNP
rs547227049 604 dbSNP
rs144040841 605 dbSNP
rs1342931032 606 dbSNP
rs1165478810 609 dbSNP
rs1349664194 611 dbSNP
rs536038434 612 dbSNP
rs556024597 613 dbSNP
rs1031182503 617 dbSNP
rs749233263 618 dbSNP
rs575394250 619 dbSNP
rs1413736068 621 dbSNP
rs1192557902 625 dbSNP
rs989267239 625 dbSNP
rs1362836078 629 dbSNP
rs989917516 632 dbSNP
rs1489200769 634 dbSNP
rs1283833564 636 dbSNP
rs1215871554 639 dbSNP
rs1312835257 645 dbSNP
rs1303588757 648 dbSNP
rs1217626245 649 dbSNP
rs1298295440 651 dbSNP
rs914321351 654 dbSNP
rs913351628 657 dbSNP
rs1402279216 660 dbSNP
rs969730572 660 dbSNP
rs1359073369 662 dbSNP
rs145982223 665 dbSNP
rs777709451 673 dbSNP
rs187327232 674 dbSNP
rs190334024 675 dbSNP
rs1412340623 677 dbSNP
rs539855031 678 dbSNP
rs937228734 679 dbSNP
rs1478660836 680 dbSNP
rs1204648003 682 dbSNP
rs183242659 687 dbSNP
rs756764708 688 dbSNP
rs1208138681 689 dbSNP
rs1191031013 691 dbSNP
rs573896384 700 dbSNP
rs1361341139 706 dbSNP
rs535080728 708 dbSNP
rs199527386 709 dbSNP
rs1278039117 711 dbSNP
rs1381981446 717 dbSNP
rs1397051948 717 dbSNP
rs542393948 719 dbSNP
rs533576091 721 dbSNP
rs1445211997 726 dbSNP
rs1170302088 729 dbSNP
rs1404767377 755 dbSNP
rs1004562315 758 dbSNP
rs1037822028 760 dbSNP
rs1169506322 763 dbSNP
rs1424274985 763 dbSNP
rs1414666863 764 dbSNP
rs900573071 768 dbSNP
rs996201614 769 dbSNP
rs1238929346 778 dbSNP
rs1158050188 784 dbSNP
rs11554819 787 dbSNP
rs1316300589 790 dbSNP
rs549034854 790 dbSNP
rs1251052280 798 dbSNP
rs1246007832 799 dbSNP
rs1323984507 802 dbSNP
rs1437071240 802 dbSNP
rs1452609030 804 dbSNP
rs1381400667 805 dbSNP
rs1331449901 806 dbSNP
rs1051782483 811 dbSNP
rs1330486525 817 dbSNP
rs1297355955 818 dbSNP
rs1397703214 818 dbSNP
rs1435771380 819 dbSNP
rs1370028664 820 dbSNP
rs1448871709 820 dbSNP
rs1160485964 821 dbSNP
rs1241725545 821 dbSNP
rs1291575080 821 dbSNP
rs1302292261 821 dbSNP
rs1305824974 821 dbSNP
rs1309299640 821 dbSNP
rs1322638445 821 dbSNP
rs1333522139 821 dbSNP
rs1387054592 821 dbSNP
rs1392607454 821 dbSNP
rs1423864772 821 dbSNP
rs34405141 821 dbSNP
rs67014513 821 dbSNP
rs28587880 822 dbSNP
rs1369896505 823 dbSNP
rs1363344281 824 dbSNP
rs1224319791 825 dbSNP
rs1267792048 827 dbSNP
rs1199832720 830 dbSNP
rs1327457051 830 dbSNP
rs1211001418 836 dbSNP
rs1222250099 838 dbSNP
rs1265641041 838 dbSNP
rs1488880884 838 dbSNP
rs1288746170 840 dbSNP
rs1347907804 840 dbSNP
rs1491178504 840 dbSNP
rs1332475196 841 dbSNP
rs57051407 841 dbSNP
rs867082897 841 dbSNP
rs796454866 842 dbSNP
rs1299933144 843 dbSNP
rs1340934620 843 dbSNP
rs1384265117 843 dbSNP
rs1398936681 843 dbSNP
rs200433697 843 dbSNP
rs1173252299 844 dbSNP
rs1451549467 846 dbSNP
rs1197441123 851 dbSNP
rs1467733024 862 dbSNP
rs1199022915 863 dbSNP
rs562380375 863 dbSNP
rs1265870118 864 dbSNP
rs999789735 864 dbSNP
rs1192125199 866 dbSNP
rs1446933372 867 dbSNP
rs998337152 870 dbSNP
rs1180981113 871 dbSNP
rs1200556343 875 dbSNP
rs1409339261 876 dbSNP
rs111871574 880 dbSNP
rs544272948 883 dbSNP
rs1279928759 884 dbSNP
rs139872447 886 dbSNP
rs1325811018 887 dbSNP
rs1007530024 892 dbSNP
rs969761669 892 dbSNP
rs1033273643 900 dbSNP
rs1389859092 902 dbSNP
rs957593025 904 dbSNP
rs1404062980 905 dbSNP
rs1457688129 906 dbSNP
rs1403526031 913 dbSNP
rs533319354 914 dbSNP
rs1466399875 920 dbSNP
rs149654840 921 dbSNP
rs1169000257 922 dbSNP
rs1405647766 926 dbSNP
rs1475345285 927 dbSNP
rs1020306254 929 dbSNP
rs1238588214 934 dbSNP
rs116104358 937 dbSNP
rs1202632884 944 dbSNP
rs1318176187 956 dbSNP
rs1259699885 960 dbSNP
rs981503157 962 dbSNP
rs983392609 971 dbSNP
rs927103329 972 dbSNP
rs543300842 978 dbSNP
rs1246978547 991 dbSNP
rs768387046 999 dbSNP
rs1447719032 1001 dbSNP
rs1402757838 1003 dbSNP
rs1327217689 1004 dbSNP
rs1356170241 1005 dbSNP
rs1409714683 1006 dbSNP
rs567252591 1007 dbSNP
rs1165493388 1008 dbSNP
rs1443397508 1009 dbSNP
rs1382780111 1019 dbSNP
rs973213405 1019 dbSNP
rs1457903412 1023 dbSNP
rs1239585922 1031 dbSNP
rs773686969 1036 dbSNP
rs116365185 1044 dbSNP
rs1490357084 1045 dbSNP
rs1357206321 1047 dbSNP
rs1314406911 1049 dbSNP
rs932064525 1051 dbSNP
rs1379255980 1056 dbSNP
rs1249084656 1058 dbSNP
rs1473378010 1080 dbSNP
rs909167898 1086 dbSNP
rs1367677729 1087 dbSNP
rs1471714417 1091 dbSNP
rs1423238839 1092 dbSNP
rs748129011 1092 dbSNP
rs1047215 1094 dbSNP
rs1175118211 1094 dbSNP
rs1409602911 1094 dbSNP
rs745359329 1094 dbSNP
rs940348814 1095 dbSNP
rs1247012224 1097 dbSNP
rs890463041 1102 dbSNP
rs1036055361 1103 dbSNP
rs1489827054 1104 dbSNP
rs901580545 1106 dbSNP
rs1052737480 1107 dbSNP
rs1355932082 1109 dbSNP
rs1282327432 1116 dbSNP
rs1391400537 1117 dbSNP
rs894036609 1120 dbSNP
rs1011098332 1132 dbSNP
rs1307512650 1133 dbSNP
rs933029869 1135 dbSNP
rs1050191014 1139 dbSNP
rs549713427 1149 dbSNP
rs1023776693 1152 dbSNP
rs3814452 1155 dbSNP
rs1329589449 1161 dbSNP
rs868654285 1162 dbSNP
rs1001248981 1164 dbSNP
rs1425466228 1164 dbSNP
rs1035365519 1165 dbSNP
rs959774281 1166 dbSNP
rs569445495 1167 dbSNP
rs747709384 1168 dbSNP
rs1014865501 1170 dbSNP
rs1340225962 1171 dbSNP
rs1279243056 1172 dbSNP
rs1243097076 1173 dbSNP
rs1286567154 1176 dbSNP
rs1360522010 1176 dbSNP
rs376736505 1176 dbSNP
rs546090472 1176 dbSNP
rs1359282394 1177 dbSNP
rs538442809 1178 dbSNP
rs1428259330 1180 dbSNP
rs973285771 1180 dbSNP
rs1430183237 1184 dbSNP
rs557844644 1187 dbSNP
rs1185911392 1190 dbSNP
rs1483612202 1191 dbSNP
rs931763432 1203 dbSNP
rs1201937499 1207 dbSNP
rs1461051249 1212 dbSNP
rs1007092637 1228 dbSNP
rs773281359 1229 dbSNP
rs563477973 1234 dbSNP
rs893411164 1236 dbSNP
rs1227483386 1238 dbSNP
rs1010638639 1247 dbSNP
rs1306162287 1251 dbSNP
rs1295465063 1255 dbSNP
rs75176861 1256 dbSNP
rs1020211431 1260 dbSNP
rs1483791134 1264 dbSNP
rs1195992469 1269 dbSNP
rs1338137703 1269 dbSNP
rs1449937939 1282 dbSNP
rs1052847808 1284 dbSNP
rs893785104 1286 dbSNP
rs1463312226 1290 dbSNP
rs760618559 1290 dbSNP
rs1385720859 1298 dbSNP
rs1169651325 1299 dbSNP
rs1387109689 1299 dbSNP
rs946984164 1299 dbSNP
rs571293780 1302 dbSNP
rs905374628 1304 dbSNP
rs538005486 1310 dbSNP
rs1197825017 1319 dbSNP
rs1479852642 1325 dbSNP
rs1388367821 1327 dbSNP
rs556076385 1335 dbSNP
rs553518674 1336 dbSNP
rs1243177134 1340 dbSNP
rs1307248026 1342 dbSNP
rs1392838886 1345 dbSNP
rs1393979468 1347 dbSNP
rs1297411221 1348 dbSNP
rs1458306136 1351 dbSNP
rs1401808061 1353 dbSNP
rs1394586384 1365 dbSNP
rs1424070131 1366 dbSNP
rs1004611198 1374 dbSNP
rs759825426 1374 dbSNP
rs1021010727 1376 dbSNP
rs1417562221 1377 dbSNP
rs1250185028 1381 dbSNP
rs1435011408 1383 dbSNP
rs573866834 1387 dbSNP
rs373723214 1389 dbSNP
rs765713019 1389 dbSNP
rs963039783 1391 dbSNP
rs1296099213 1392 dbSNP
rs958779814 1393 dbSNP
rs1240672530 1394 dbSNP
rs766258392 1395 dbSNP
rs984682174 1397 dbSNP
rs1405300176 1400 dbSNP
rs1227554802 1401 dbSNP
rs1347212697 1403 dbSNP
rs909105796 1404 dbSNP
rs940647823 1407 dbSNP
rs1424007196 1413 dbSNP
rs1361169563 1420 dbSNP
rs971988712 1421 dbSNP
rs542481558 1422 dbSNP
rs932976121 1428 dbSNP
rs1050165029 1430 dbSNP
rs1267296138 1432 dbSNP
rs78566515 1434 dbSNP
rs1342451398 1436 dbSNP
rs1201879426 1440 dbSNP
rs575786583 1444 dbSNP
rs942843476 1445 dbSNP
rs1261759194 1446 dbSNP
rs1243521188 1448 dbSNP
rs1206413371 1451 dbSNP
rs1347977194 1459 dbSNP
rs1464304750 1461 dbSNP
rs1259763877 1464 dbSNP
rs1223806186 1466 dbSNP
rs1054657986 1468 dbSNP
rs893305599 1469 dbSNP
rs74771720 1470 dbSNP
rs988214704 1471 dbSNP
rs1430343212 1475 dbSNP
rs1041952089 1478 dbSNP
rs1380571474 1483 dbSNP
rs758979937 1483 dbSNP
rs1337633096 1484 dbSNP
rs564595308 1486 dbSNP
rs577960860 1493 dbSNP
rs1002865331 1497 dbSNP
rs1464724187 1498 dbSNP
rs1178939100 1501 dbSNP
rs1407265128 1503 dbSNP
rs1045329794 1509 dbSNP
rs1457093465 1510 dbSNP
rs1191732359 1513 dbSNP
rs779545266 1514 dbSNP
rs1444762319 1515 dbSNP
rs1260511549 1518 dbSNP
rs75041738 1520 dbSNP
rs958843018 1524 dbSNP
rs939543539 1526 dbSNP
rs764463757 1528 dbSNP
rs1057051452 1534 dbSNP
rs887252333 1537 dbSNP
rs1271833415 1539 dbSNP
rs1225240256 1542 dbSNP
rs1006455768 1543 dbSNP
rs1337487125 1547 dbSNP
rs1005045518 1550 dbSNP
rs1404229995 1551 dbSNP
rs1367977542 1552 dbSNP
rs1410860277 1558 dbSNP
rs1399160186 1560 dbSNP
rs1166656667 1561 dbSNP
rs1016070358 1565 dbSNP
rs962205378 1566 dbSNP
rs1183691632 1567 dbSNP
rs971936135 1571 dbSNP
rs923191773 1572 dbSNP
rs1202692230 1573 dbSNP
rs759624906 1577 dbSNP
rs529015096 1579 dbSNP
rs765508460 1592 dbSNP
rs540605382 1598 dbSNP
rs1328919223 1612 dbSNP
rs1274866275 1617 dbSNP
rs752650673 1619 dbSNP
rs910279802 1623 dbSNP
rs1263425512 1624 dbSNP
rs1328166532 1627 dbSNP
rs1248231012 1636 dbSNP
rs1206625331 1638 dbSNP
rs1380741303 1643 dbSNP
rs1314619698 1645 dbSNP
rs1491224217 1651 dbSNP
rs1486162115 1652 dbSNP
rs1491340851 1652 dbSNP
rs758467593 1658 dbSNP
rs764214862 1659 dbSNP
rs1266759157 1662 dbSNP
rs914704116 1664 dbSNP
rs946224748 1680 dbSNP
rs1382914131 1681 dbSNP
rs1470316526 1683 dbSNP
rs1028942558 1689 dbSNP
rs1179437688 1696 dbSNP
rs148472283 1707 dbSNP
rs907507133 1708 dbSNP
rs1224709145 1710 dbSNP
rs1291133862 1710 dbSNP
rs1357369283 1710 dbSNP
rs1456979820 1711 dbSNP
rs1224482463 1713 dbSNP
rs538915544 1713 dbSNP
rs1347371835 1715 dbSNP
rs1278106584 1718 dbSNP
rs1441892829 1719 dbSNP
rs1002812728 1721 dbSNP
rs1305475786 1726 dbSNP
rs1403644011 1727 dbSNP
rs529325627 1736 dbSNP
rs1163489715 1740 dbSNP
rs1400888809 1743 dbSNP
rs988636503 1745 dbSNP
rs1406266949 1749 dbSNP
rs1283482070 1753 dbSNP
rs1472137259 1753 dbSNP
rs1269422837 1755 dbSNP
rs1349500911 1756 dbSNP
rs1183877435 1758 dbSNP
rs1489841979 1759 dbSNP
rs749697172 1759 dbSNP
rs915328913 1759 dbSNP
rs1223490989 1760 dbSNP
rs1491322041 1760 dbSNP
rs549650119 1765 dbSNP
rs980727681 1767 dbSNP
rs1285599232 1769 dbSNP
rs879429230 1771 dbSNP
rs1289970619 1774 dbSNP
rs894481252 1775 dbSNP
rs1317370020 1776 dbSNP
rs1290010612 1781 dbSNP
rs1345472771 1781 dbSNP
rs781372268 1787 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3720.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_004973 | 3UTR | CUGCACCCCUCCCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_004973 | 3UTR | CUGCACCCCUCCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000341776.2 | 3UTR | ACAUUUAAUUUAUUAGCGCUGCUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.361 0.17 -0.067 0.43 9 Click to see details
LUSC 0.386 0.31 0.400 0.3 4 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
HNSC 0.023 0.47 0.136 0.35 11 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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