pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GOLIM4   
Synonyms GIMPC, GOLPH4, GPP130, P138
Description golgi integral membrane protein 4
Transcript NM_014498   
Expression
Putative miRNA Targets on GOLIM4
3'UTR of GOLIM4
(miRNA target sites are highlighted)
>GOLIM4|NM_014498|3'UTR
   1 CGGCACCCAATTTCTAGACAACGCTCAGCCAACGGATTCTTTTCAAGCTGCTCAAACATAAATCTGCCTACTGAACTCTA
  81 GGATATTTAATTACAAAAATTAAGAACTTAGACTTTTTTAAAACTTTTGTATTAGAAATGCGCATACATTTATATGAATA
 161 TATTTTGATAACGTAGGTCTAGAGCTTCTTTTATATTCAAGCTAAACATGAAAAAGAAGAAAAACAATAAAGTAAACCTG
 241 AGCCCCCACGTCCCAATTTTTTTAATAGATTATGTGATGTTGGAAAGCTCATTGATTTTGTATATGTTTCAGCGTGTTAC
 321 CTTTCTGGCTTCCAGTTCCCAGGTGTTCTTTGTTTGCCTTTGATAAAATACAGGATTTAAGAACAGAGAGTACTGCAAAA
 401 TGCCATGCAGACTTTAAAGAGAATGGCCTGTTTACTAATTGCTGCCCTTCTGATGTCTTTATGTATAGCTCTGATAGAAT
 481 TTTCACCAGTCTATGTATCTCTGGAGTGAGATCTATGTACAAAGTGACATACAATTGGAAATCCATTTTTGTTGTAAAGA
 561 CATTGTTTTTCAGACTTTTCAGATCAATTAGAAAAATGTCATTGCTTTAAAATCATAGCTGTTCTGTTTAAGAGGAATTG
 641 AATTTAAAAATGAGAGAGTATTAAAACTCATGTGGCAGTATCCTGGTCTTAATCAGGTATTGCAGTGTTCAAACAAGGTA
 721 TGGACACATCAACATATTCACCTTTTGGAAGGACTAGTGACTTGGTTAAAAACTAATGAGTGTTTGCGTGTGGTGTTTCT
 801 ATGCGAGCACCCATTCTCAATTTTTTTTTTTTTTTTTTGTTTGAAGCCATTGATTGATATTCTTGTTTCAGTGTCTGGTT
 881 CCCTATAAGTAATATATATTTCCTCTTTAAGCTCTGTGCCTCAATATGCAATCACTTTGATAATAAGTATAAATATGAAG
 961 ACATACCAAACTGCAAATAGGATTATTTTTCAAAACTATATGGTGAAACATATGGTGATATGATAGACTTATGGTTTTTC
1041 TGTTTGCTGGGATTGGGTCTGCTTTTTGCCTATGTGTAAGGCATTTTAATCATTGTGAATATAATAGATTCCTTAAAATA
1121 AGAAAATTAAAAATCAGAAACTTCCCTTGGAGTAGAGACATTTCAGTTGCAAGCATAAAGATTTTTAAATATATAACACT
1201 AGGTTATATAATTCATATATGTGTGGTTTTGTATTAATAATCAAATTAATAAAAACATTTCATTTTCTACCATTGTATGA
1281 ACGTAATTTTATTTTTTAATAACCACACTCATAGATGGTTTTGATTGTTCCAGTTGAGTGATTGTGTATGTACGCATAGG
1361 AATGTTTTGTTCAGTTGTACTTTGTATTTCCAATAATCAGAAATCTTACCTTTATGTATAAAAACCCATTATGTAATGTA
1441 AAATGTATAATATTGTACATAATATTCAGAATACAATTATTTTGGTAAATTAGCTTGTATTTTTAATGTCCCAGTTGCAG
1521 TATTTAATTATTTGAACCATACTGAAAGTTGGTAATAGTCAATAAAGCTAAAAAAAAAAAGTGGCAAATCTTTTAAAAAA
1601 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccUACGUUUAAAAu 5'
                |||||:| ||| 
Target 5' aatgccATGCAGACTTTa 3'
399 - 416 112.00 -7.50
2
miRNA  3' agGACCUACGUU---UAAAAu 5'
            ||  :||:||   ||||| 
Target 5' gcCTATGTGTAAGGCATTTTa 3'
1068 - 1088 108.00 -8.00
3
miRNA  3' agGACCUACG----UUUAAAau 5'
            :|||| |:    | ||||  
Target 5' ccTTGGA-GTAGAGACATTTca 3'
1145 - 1165 93.00 -8.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14045600 1 COSMIC
COSN30549297 2 COSMIC
COSN26977726 5 COSMIC
COSN30470242 30 COSMIC
COSN30156039 32 COSMIC
COSN18717815 34 COSMIC
COSN20966892 44 COSMIC
COSN31599544 82 COSMIC
COSN30122560 84 COSMIC
COSN30145147 92 COSMIC
COSN4814071 100 COSMIC
COSN30112914 113 COSMIC
COSN30141879 156 COSMIC
COSN22285213 167 COSMIC
COSN19728330 173 COSMIC
COSN29312385 489 COSMIC
COSN1929285 821 COSMIC
COSN6426063 839 COSMIC
COSN22365522 1022 COSMIC
COSN24930267 1410 COSMIC
COSN15728810 1474 COSMIC
COSN25689587 1492 COSMIC
COSN29419336 1499 COSMIC
COSN27370275 1569 COSMIC
COSN28952355 1570 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373039345 1 dbSNP
rs73037447 2 dbSNP
rs73174971 3 dbSNP
rs758624025 5 dbSNP
rs1023835846 6 dbSNP
rs1355967448 8 dbSNP
rs753805012 9 dbSNP
rs1230337597 10 dbSNP
rs763811684 14 dbSNP
rs755916799 17 dbSNP
rs376334125 22 dbSNP
rs766622805 23 dbSNP
rs763128598 24 dbSNP
rs1202903477 25 dbSNP
rs750496970 26 dbSNP
rs373465776 27 dbSNP
rs762341329 33 dbSNP
rs777287939 34 dbSNP
rs1213449222 39 dbSNP
rs1341663269 45 dbSNP
rs769340639 46 dbSNP
rs761113029 47 dbSNP
rs775756921 50 dbSNP
rs943334244 53 dbSNP
rs1194448175 54 dbSNP
rs530455515 60 dbSNP
rs760148493 61 dbSNP
rs1471869007 67 dbSNP
rs1165152054 68 dbSNP
rs887741034 73 dbSNP
rs1049072004 78 dbSNP
rs1242868447 79 dbSNP
rs1420890137 79 dbSNP
rs1195462928 107 dbSNP
rs1489861652 112 dbSNP
rs562923512 119 dbSNP
rs1162235105 127 dbSNP
rs796343563 130 dbSNP
rs1372240496 133 dbSNP
rs544805014 134 dbSNP
rs532620460 141 dbSNP
rs146393140 142 dbSNP
rs1278104297 147 dbSNP
rs184213756 152 dbSNP
rs1238267406 155 dbSNP
rs988015833 158 dbSNP
rs1177139482 159 dbSNP
rs1382505646 163 dbSNP
rs1214299537 172 dbSNP
rs73037443 173 dbSNP
rs1032397718 175 dbSNP
rs761094926 179 dbSNP
rs1270345646 182 dbSNP
rs1334286462 183 dbSNP
rs1219947557 190 dbSNP
rs554994766 193 dbSNP
rs979109779 194 dbSNP
rs963566364 195 dbSNP
rs553773536 203 dbSNP
rs969485452 206 dbSNP
rs1343163212 214 dbSNP
rs1023383108 219 dbSNP
rs1386209946 220 dbSNP
rs373740252 222 dbSNP
rs1022603097 224 dbSNP
rs542534017 227 dbSNP
rs1405527392 228 dbSNP
rs1351524513 232 dbSNP
rs747555399 237 dbSNP
rs1347124105 248 dbSNP
rs1279487456 249 dbSNP
rs896626507 250 dbSNP
rs1196945685 255 dbSNP
rs192516596 256 dbSNP
rs1240271321 260 dbSNP
rs1409115766 260 dbSNP
rs1440683078 261 dbSNP
rs1420504316 263 dbSNP
rs1193470145 264 dbSNP
rs1376394827 266 dbSNP
rs1169816442 267 dbSNP
rs1479316689 267 dbSNP
rs1015048675 269 dbSNP
rs556851501 277 dbSNP
rs1200202542 280 dbSNP
rs1463609960 294 dbSNP
rs1332888678 296 dbSNP
rs959685370 299 dbSNP
rs1490988975 302 dbSNP
rs1005068850 304 dbSNP
rs1035880529 313 dbSNP
rs568025228 314 dbSNP
rs1269558314 332 dbSNP
rs996188017 335 dbSNP
rs1216894011 344 dbSNP
rs1260227593 346 dbSNP
rs1458412707 348 dbSNP
rs903017416 359 dbSNP
rs1213430447 365 dbSNP
rs1265646464 372 dbSNP
rs1453715272 374 dbSNP
rs1438693589 384 dbSNP
rs1242059219 392 dbSNP
rs1042867859 395 dbSNP
rs1200213313 396 dbSNP
rs1011518668 406 dbSNP
rs1460643483 408 dbSNP
rs899775121 411 dbSNP
rs1282144157 416 dbSNP
rs1392572601 418 dbSNP
rs773766056 425 dbSNP
rs1040423435 426 dbSNP
rs1317486412 428 dbSNP
rs533888602 434 dbSNP
rs943386752 437 dbSNP
rs1441228066 454 dbSNP
rs1052283016 456 dbSNP
rs1232855991 461 dbSNP
rs911895585 463 dbSNP
rs568025611 465 dbSNP
rs548073304 466 dbSNP
rs935182727 468 dbSNP
rs538449537 474 dbSNP
rs979798562 482 dbSNP
rs143635594 486 dbSNP
rs916241726 488 dbSNP
rs1468475846 489 dbSNP
rs1474613762 492 dbSNP
rs187950369 493 dbSNP
rs184024850 495 dbSNP
rs376157349 502 dbSNP
rs371888098 507 dbSNP
rs1434910969 508 dbSNP
rs1014655632 515 dbSNP
rs973571107 518 dbSNP
rs963494273 519 dbSNP
rs1406440295 520 dbSNP
rs952350507 524 dbSNP
rs192469266 525 dbSNP
rs1027896989 526 dbSNP
rs991692226 527 dbSNP
rs369843362 532 dbSNP
rs531584452 535 dbSNP
rs1040413959 545 dbSNP
rs1260558227 547 dbSNP
rs1351993041 554 dbSNP
rs1219387000 558 dbSNP
rs187781681 561 dbSNP
rs1287376151 578 dbSNP
rs1485027766 586 dbSNP
rs58648715 587 dbSNP
rs1257790565 597 dbSNP
rs1424076324 605 dbSNP
rs1378204520 609 dbSNP
rs1441316879 613 dbSNP
rs4254706 621 dbSNP
rs1053220303 635 dbSNP
rs79339930 640 dbSNP
rs1301211668 642 dbSNP
rs925143833 649 dbSNP
rs1396776979 650 dbSNP
rs1203761433 651 dbSNP
rs1043616849 654 dbSNP
rs1242788845 665 dbSNP
rs1310618810 671 dbSNP
rs947969911 672 dbSNP
rs916225814 674 dbSNP
rs1021775719 675 dbSNP
rs991800791 682 dbSNP
rs1011444808 688 dbSNP
rs899662080 689 dbSNP
rs1235991121 697 dbSNP
rs1281512540 700 dbSNP
rs1039683448 702 dbSNP
rs1179093447 705 dbSNP
rs960384838 712 dbSNP
rs907628175 720 dbSNP
rs1178169547 724 dbSNP
rs1008110765 730 dbSNP
rs532760778 734 dbSNP
rs1330868796 736 dbSNP
rs983197765 740 dbSNP
rs890462609 756 dbSNP
rs1332517121 760 dbSNP
rs1367370109 766 dbSNP
rs1217934210 781 dbSNP
rs952211893 786 dbSNP
rs140018112 787 dbSNP
rs371334262 788 dbSNP
rs1255754465 791 dbSNP
rs1337568615 794 dbSNP
rs1467761527 798 dbSNP
rs897931491 802 dbSNP
rs150648922 804 dbSNP
rs1487401445 810 dbSNP
rs1192783942 812 dbSNP
rs1158437377 816 dbSNP
rs1263948354 818 dbSNP
rs1224006290 819 dbSNP
rs1361362949 820 dbSNP
rs1433833808 827 dbSNP
rs1170151295 831 dbSNP
rs1182166118 831 dbSNP
rs942236986 832 dbSNP
rs1421744746 833 dbSNP
rs916076174 834 dbSNP
rs991703710 835 dbSNP
rs938912051 838 dbSNP
rs1275821255 839 dbSNP
rs1295781062 839 dbSNP
rs1349623577 839 dbSNP
rs1368967348 839 dbSNP
rs1394595146 839 dbSNP
rs1398844526 839 dbSNP
rs1434791659 839 dbSNP
rs377481099 839 dbSNP
rs59870709 839 dbSNP
rs766167377 839 dbSNP
rs12487372 841 dbSNP
rs1214312355 842 dbSNP
rs1242163125 842 dbSNP
rs201375757 843 dbSNP
rs1182147054 844 dbSNP
rs967437042 862 dbSNP
rs1021409906 869 dbSNP
rs1484028927 874 dbSNP
rs1333000241 875 dbSNP
rs1449687533 878 dbSNP
rs1303102410 881 dbSNP
rs989898548 885 dbSNP
rs1237755191 895 dbSNP
rs1019238963 896 dbSNP
rs1311331099 897 dbSNP
rs1214392047 898 dbSNP
rs1317476627 907 dbSNP
rs1287987353 910 dbSNP
rs770061019 915 dbSNP
rs1354409442 918 dbSNP
rs1224395736 922 dbSNP
rs963877166 924 dbSNP
rs1018088951 927 dbSNP
rs190112079 931 dbSNP
rs1243513678 935 dbSNP
rs746803040 936 dbSNP
rs891843551 941 dbSNP
rs1177201233 947 dbSNP
rs1008163094 948 dbSNP
rs1470830051 949 dbSNP
rs1172514516 957 dbSNP
rs1422402427 964 dbSNP
rs1415708529 977 dbSNP
rs1334380954 980 dbSNP
rs1399148402 981 dbSNP
rs1444304980 996 dbSNP
rs543030560 998 dbSNP
rs1000696756 999 dbSNP
rs186135144 1001 dbSNP
rs868025832 1007 dbSNP
rs1342897380 1011 dbSNP
rs1043970986 1013 dbSNP
rs947968860 1014 dbSNP
rs1317588924 1015 dbSNP
rs1197123019 1025 dbSNP
rs1240347044 1029 dbSNP
rs1025962987 1031 dbSNP
rs1198722360 1032 dbSNP
rs141904471 1032 dbSNP
rs1363013017 1033 dbSNP
rs897812115 1034 dbSNP
rs1245534517 1035 dbSNP
rs1478708506 1042 dbSNP
rs1037789099 1047 dbSNP
rs1422456030 1051 dbSNP
rs1056345808 1053 dbSNP
rs1172379276 1055 dbSNP
rs1162163783 1057 dbSNP
rs1424572398 1068 dbSNP
rs148102255 1072 dbSNP
rs182862294 1074 dbSNP
rs1332798736 1079 dbSNP
rs1438696544 1089 dbSNP
rs552779475 1095 dbSNP
rs1284063569 1103 dbSNP
rs894654139 1108 dbSNP
rs1425243368 1109 dbSNP
rs1259175202 1110 dbSNP
rs1260265490 1110 dbSNP
rs1340474466 1111 dbSNP
rs1209664523 1118 dbSNP
rs1288348365 1125 dbSNP
rs1185432056 1126 dbSNP
rs534399826 1129 dbSNP
rs1200799352 1131 dbSNP
rs1055865890 1138 dbSNP
rs1261751432 1141 dbSNP
rs1163351767 1156 dbSNP
rs938830781 1159 dbSNP
rs928933390 1162 dbSNP
rs1476573155 1163 dbSNP
rs1195332584 1167 dbSNP
rs1373341240 1177 dbSNP
rs1457190235 1187 dbSNP
rs1220248716 1197 dbSNP
rs190622371 1198 dbSNP
rs1425154426 1208 dbSNP
rs1292290692 1221 dbSNP
rs1280305463 1231 dbSNP
rs1398286343 1231 dbSNP
rs930404757 1233 dbSNP
rs945773258 1240 dbSNP
rs920743453 1242 dbSNP
rs1358914010 1243 dbSNP
rs1223828956 1245 dbSNP
rs1295041623 1247 dbSNP
rs552263028 1258 dbSNP
rs914203060 1259 dbSNP
rs1261986763 1260 dbSNP
rs764535475 1266 dbSNP
rs1184975635 1270 dbSNP
rs1369909620 1277 dbSNP
rs367903093 1282 dbSNP
rs144040335 1283 dbSNP
rs1417936232 1287 dbSNP
rs1290771742 1295 dbSNP
rs987758146 1307 dbSNP
rs562414657 1308 dbSNP
rs955992638 1310 dbSNP
rs1332477365 1312 dbSNP
rs1385377434 1343 dbSNP
rs1247233874 1344 dbSNP
rs140959235 1348 dbSNP
rs1031679381 1352 dbSNP
rs186563412 1353 dbSNP
rs569407607 1354 dbSNP
rs778044950 1357 dbSNP
rs955369977 1360 dbSNP
rs551285740 1362 dbSNP
rs1198327716 1375 dbSNP
rs994488402 1383 dbSNP
rs1257899795 1405 dbSNP
rs542519766 1414 dbSNP
rs1016184275 1418 dbSNP
rs1012489856 1420 dbSNP
rs1477939973 1427 dbSNP
rs895015651 1431 dbSNP
rs1196620937 1434 dbSNP
rs1006274641 1443 dbSNP
rs1159752910 1445 dbSNP
rs1364416746 1452 dbSNP
rs1171014588 1453 dbSNP
rs1465628493 1453 dbSNP
rs1480082316 1455 dbSNP
rs1453828612 1464 dbSNP
rs1331163629 1478 dbSNP
rs894588379 1479 dbSNP
rs1055793490 1483 dbSNP
rs1393574706 1489 dbSNP
rs1267924418 1492 dbSNP
rs565591307 1497 dbSNP
rs1308372735 1509 dbSNP
rs1211421782 1514 dbSNP
rs1003078209 1516 dbSNP
rs1482562794 1522 dbSNP
rs907363557 1534 dbSNP
rs1236064770 1537 dbSNP
rs939274566 1539 dbSNP
rs1177664177 1542 dbSNP
rs1266648442 1543 dbSNP
rs1199583105 1554 dbSNP
rs1041977403 1557 dbSNP
rs1432635824 1559 dbSNP
rs1320236581 1562 dbSNP
rs1281513390 1563 dbSNP
rs1222934575 1567 dbSNP
rs1346698289 1568 dbSNP
rs1303974268 1569 dbSNP
rs1390152730 1570 dbSNP
rs886080642 1570 dbSNP
rs1470391744 1576 dbSNP
rs1170239393 1580 dbSNP
rs1247964734 1581 dbSNP
rs201335009 1581 dbSNP
rs576610047 1581 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 27333.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000470487.1 | 3UTR | UAAUUUUAUUUUUUAAUAACCACACUCAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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