miRTarBase - #MIRT548054


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pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GOLGA7   
Synonyms GCP16, GOLGA3AP1, GOLGA7A, HSPC041
Description golgin A7
Transcript NM_001174124   
Other Transcripts NM_001002296 , NM_016099   
Expression
Putative miRNA Targets on GOLGA7
3'UTR of GOLGA7
(miRNA target sites are highlighted)		 
>GOLGA7|NM_001174124|3'UTR
   1 GCAGTGGAAGATAAACCGAAGAATTAAAGATCCCACTTCCAGCCGGGCCCCTCATGTATCCACTGGCCGACCGCAGAGTG
  81 TCCCTACCTCCTCTCCAGAGCATCATTCCTTTCTATCTGCTGCCAGAGCCACGGTGCCATTTACTCCAAGGACTCACTTT
 161 CTAAAATTCCACACCTGGAGTGACCTCTAGTCGCTCAGCATCCACTTTGTGTCTCCAAATTGTGTAGGACTCTGTAATCT
 241 TTTGATTAGTTTCTGAGAAAACACAATGAAGCACTTCACTTTTTTTTATTCAAAGCCATTTAATAAAACACAGTTGGTCA
 321 GCCCAGTGCAAAGCTTGTTATCTGCCACCAGTACATACCATTGGTTCTCTTCATTCCTTGGGCCAGCTTCTCAGGTGGCT
 401 TTAGACCTCAACAAGCCGTATCTTCACCAGTGTTCTATCTTGTTCCCCTAAATTAATAAAATGTTTTTCTCCAGGATTTT
 481 GGTGAGGGTTGGCTGTGGCTGTCGTTTTGCACCTCCCAGATTTCAAAGAATTACTGGTTTTACCATGACTCAAATCTTAA
 561 GATCTGTTTCTACTATTCAGTTCCTCAAACTGAAGCTTATTGAAAAAAAAATGTATAATGTTATTTGTTTTATTATAGCA
 641 ATTATGCCTAATTAAAGCAGTATTTAATGCAATTTCCAGTTATTTCTTTGGAGAATTTTATGTCATTGTTCCATTACCTT
 721 GAATGTTGGAAAGATATGATACGTGCTGCTTGTTCATCACAAAAATCAGTAAGCACAATAAAGTGGATGCCAAACCATCA
 801 GACACATAAATGTTCCCGCTGTGTCCCTGGATATGGAATAAGCAGGTATAAAAAATATTTTAATTATAGTTTTGTTATAA
 881 ATATAACTTATGAGAAAAAAATTTGATAGGAATAATACTGTATATTACTAATTTTTAACTATCCCTAAGGCAAACCTTAT
 961 GACCCACAGAATTTTCTCATATACAGTATTCAGTGCACAGAAATCTTATGATTGGCTCAAGTACAGTAAGTTACTTCTCA
1041 GTAAAACTCTCAAGTCTGAGTCCATATTTGTAGCTCTGCTTTTGGCTGTACGTTCCTAGGATCGGGGCTGCTTATGCCTT
1121 TCGTTTATCCTTGGGGTTTGAGAGCGCTGTATTTGGGAGAGAGTTTAAAAATACATTAGGAGAGAGAAACCATTAAAAGT
1201 TTCACTGTCAGATATATTGTAGGTGCTAATACTGGATTTCGTCTCAGATTTAATTTCTTTTATGGGTCTGTTAGTCATTC
1281 AACAAATCCCATAAGTATGTGTTAATATTTTAATTGTGTAAAACTCATTTGTTACTTTACAGCCTGTAATAGTGTGTCTG
1361 CATTTTCAACCTGTTGCAATAACTTTGCTGAAATATTAACACATTAATAAAACTTTTCTTAAACAAAAAAAAAAAAAAAA
1441 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaacacaaucuugucUCCGUUa 5'
                         |||||| 
Target 5' ttttaactatccctaAGGCAAa 3'
 933 - 954 120.00 -5.70
2 
miRNA  3' gaACA--CA---AUCUUGUCUCCGuua 5'
            |||  ||   |||:|: |:|||   
Target 5' gcTGTACGTTCCTAGGATCGGGGCtgc 3'
 1085 - 1111 106.00 -10.02
3 
miRNA  3' gaACACAAUCUUGUCUCCGUua 5'
            | || |  : ||||| ||  
Target 5' taTCTGCT--GCCAGAGCCAcg 3'
 114 - 133 100.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM392367 8 COSMIC
COSN30610094 17 COSMIC
COSN31566659 26 COSMIC
COSN30476061 30 COSMIC
COSN30653327 83 COSMIC
COSN5112154 335 COSMIC
COSN5112155 344 COSMIC
COSN5112156 1084 COSMIC
COSN16682347 1470 COSMIC
COSN32115297 2181 COSMIC
COSN28691374 2365 COSMIC
COSN30544279 2505 COSMIC
COSN23017211 2528 COSMIC
COSN30174498 2636 COSMIC
COSN23017212 2650 COSMIC
COSN20601910 2756 COSMIC
COSN6518671 2855 COSMIC
COSN8518948 2875 COSMIC
COSN9635218 2964 COSMIC
COSN31606741 2985 COSMIC
COSN23017213 2998 COSMIC
COSN31565356 3111 COSMIC
COSN31548277 3161 COSMIC
COSN32115298 3201 COSMIC
COSN28673695 3272 COSMIC
COSN8084876 3278 COSMIC
COSN30544600 3280 COSMIC
COSN31540018 3323 COSMIC
COSN31480443 3357 COSMIC
COSN2276157 3442 COSMIC
COSN32206306 3698 COSMIC
COSN5112157 3739 COSMIC
COSN31606185 3740 COSMIC
COSN15005567 3876 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1279358788 6 dbSNP
rs753263300 13 dbSNP
rs200266263 18 dbSNP
rs777269118 19 dbSNP
rs1264334704 21 dbSNP
rs369719989 34 dbSNP
rs1222126774 36 dbSNP
rs1310929938 42 dbSNP
rs1301098688 44 dbSNP
rs770252847 47 dbSNP
rs1481186392 48 dbSNP
rs200878522 54 dbSNP
rs754920667 55 dbSNP
rs763188134 56 dbSNP
rs1432288956 58 dbSNP
rs766398784 61 dbSNP
rs570184755 62 dbSNP
rs1387335589 67 dbSNP
rs538384460 73 dbSNP
rs1467579714 75 dbSNP
rs1027601120 82 dbSNP
rs1175103557 86 dbSNP
rs558522242 99 dbSNP
rs954099042 125 dbSNP
rs1413668196 126 dbSNP
rs1186862440 139 dbSNP
rs1464597159 141 dbSNP
rs985984439 148 dbSNP
rs1482597060 153 dbSNP
rs1012794684 159 dbSNP
rs111789171 161 dbSNP
rs1344697200 175 dbSNP
rs1022711460 185 dbSNP
rs1342007472 187 dbSNP
rs1364004476 193 dbSNP
rs1312877399 197 dbSNP
rs563999659 202 dbSNP
rs754190824 203 dbSNP
rs981235469 204 dbSNP
rs149557942 224 dbSNP
rs1345420019 228 dbSNP
rs1372234719 240 dbSNP
rs955762837 241 dbSNP
rs918856017 250 dbSNP
rs535690334 251 dbSNP
rs554848428 262 dbSNP
rs983738617 263 dbSNP
rs926994592 266 dbSNP
rs1256108811 268 dbSNP
rs779590123 274 dbSNP
rs1265408248 286 dbSNP
rs1273014015 291 dbSNP
rs549615947 294 dbSNP
rs1341031735 296 dbSNP
rs910724709 307 dbSNP
rs185189306 320 dbSNP
rs1338145478 335 dbSNP
rs1192742388 336 dbSNP
rs1378635105 337 dbSNP
rs1479216694 338 dbSNP
rs1410403367 339 dbSNP
rs895617436 342 dbSNP
rs945884445 343 dbSNP
rs1395042518 349 dbSNP
rs1041614930 353 dbSNP
rs904423994 354 dbSNP
rs1000144529 357 dbSNP
rs189657687 359 dbSNP
rs1165182311 364 dbSNP
rs1456562120 372 dbSNP
rs1368007194 373 dbSNP
rs887687948 377 dbSNP
rs1182983658 386 dbSNP
rs1473890487 387 dbSNP
rs1250169530 388 dbSNP
rs1049003998 389 dbSNP
rs1298328650 398 dbSNP
rs889792544 400 dbSNP
rs1211321003 407 dbSNP
rs1353785405 416 dbSNP
rs1272066486 417 dbSNP
rs1228461316 421 dbSNP
rs1012845056 431 dbSNP
rs1397819648 445 dbSNP
rs1391612793 447 dbSNP
rs1023197982 454 dbSNP
rs563755778 459 dbSNP
rs1331424924 464 dbSNP
rs754604437 469 dbSNP
rs907050135 471 dbSNP
rs182680300 473 dbSNP
rs1031445559 484 dbSNP
rs1458823472 486 dbSNP
rs1410437996 495 dbSNP
rs187968849 496 dbSNP
rs769824428 504 dbSNP
rs777716612 508 dbSNP
rs989809905 519 dbSNP
rs1197200172 522 dbSNP
rs559740690 530 dbSNP
rs952956547 542 dbSNP
rs1021253606 549 dbSNP
rs1251928295 551 dbSNP
rs968233734 559 dbSNP
rs1465830019 575 dbSNP
rs986363022 576 dbSNP
rs984375236 577 dbSNP
rs1345620172 589 dbSNP
rs867652410 601 dbSNP
rs926923649 608 dbSNP
rs1288337198 613 dbSNP
rs1230714136 615 dbSNP
rs1330742332 632 dbSNP
rs910681531 639 dbSNP
rs937012085 640 dbSNP
rs749049823 641 dbSNP
rs1386604738 642 dbSNP
rs944921730 644 dbSNP
rs917004923 651 dbSNP
rs528497555 652 dbSNP
rs1415612918 668 dbSNP
rs976553942 678 dbSNP
rs945842770 680 dbSNP
rs1453502379 685 dbSNP
rs1197226683 687 dbSNP
rs1041931177 688 dbSNP
rs62507800 702 dbSNP
rs1440888403 708 dbSNP
rs1465961013 709 dbSNP
rs1245737993 713 dbSNP
rs1214439914 715 dbSNP
rs768708307 717 dbSNP
rs935902723 719 dbSNP
rs1198543485 722 dbSNP
rs1381684841 724 dbSNP
rs1298029317 729 dbSNP
rs1230943043 751 dbSNP
rs1050340984 752 dbSNP
rs62507801 753 dbSNP
rs909212870 754 dbSNP
rs1205289084 763 dbSNP
rs948591428 771 dbSNP
rs193157413 776 dbSNP
rs1332727628 779 dbSNP
rs575139433 789 dbSNP
rs1371613675 791 dbSNP
rs1388132315 795 dbSNP
rs1007318833 822 dbSNP
rs759900104 833 dbSNP
rs1044350095 835 dbSNP
rs139969152 841 dbSNP
rs539474033 844 dbSNP
rs994296791 850 dbSNP
rs531114372 851 dbSNP
rs529809171 856 dbSNP
rs952883468 858 dbSNP
rs1266057288 861 dbSNP
rs1485284915 871 dbSNP
rs1358799113 877 dbSNP
rs1005725091 880 dbSNP
rs28478173 881 dbSNP
rs1272481035 886 dbSNP
rs1011284548 892 dbSNP
rs1282480532 899 dbSNP
rs958375107 906 dbSNP
rs1351626176 908 dbSNP
rs183255631 912 dbSNP
rs1236921921 913 dbSNP
rs534340450 915 dbSNP
rs1169245224 917 dbSNP
rs1180535978 921 dbSNP
rs75264294 933 dbSNP
rs977209914 935 dbSNP
rs925740245 937 dbSNP
rs935831098 943 dbSNP
rs1459184735 960 dbSNP
rs1162334139 962 dbSNP
rs1252381208 964 dbSNP
rs1393205087 965 dbSNP
rs13250945 970 dbSNP
rs1333071274 971 dbSNP
rs1371120378 983 dbSNP
rs78636725 991 dbSNP
rs1313578789 992 dbSNP
rs984888774 998 dbSNP
rs1231747627 1001 dbSNP
rs1272796735 1004 dbSNP
rs1287886080 1013 dbSNP
rs909201270 1015 dbSNP
rs557519715 1016 dbSNP
rs1044705295 1024 dbSNP
rs577373030 1029 dbSNP
rs1373114188 1033 dbSNP
rs1294453339 1034 dbSNP
rs1436834567 1042 dbSNP
rs189112096 1044 dbSNP
rs571815361 1048 dbSNP
rs12545679 1050 dbSNP
rs1161223354 1051 dbSNP
rs1471557150 1052 dbSNP
rs1407033120 1056 dbSNP
rs775942910 1058 dbSNP
rs1052919347 1065 dbSNP
rs1245132001 1070 dbSNP
rs994619369 1071 dbSNP
rs1465364717 1072 dbSNP
rs1425054657 1073 dbSNP
rs765631997 1076 dbSNP
rs1227130011 1083 dbSNP
rs1316838158 1085 dbSNP
rs17657196 1098 dbSNP
rs1221240158 1106 dbSNP
rs1005693775 1119 dbSNP
rs1369295090 1122 dbSNP
rs1323435385 1123 dbSNP
rs1416757128 1127 dbSNP
rs1034504215 1135 dbSNP
rs754655822 1140 dbSNP
rs564432425 1141 dbSNP
rs889431606 1142 dbSNP
rs542227585 1157 dbSNP
rs752286689 1168 dbSNP
rs1176528726 1170 dbSNP
rs1434645961 1180 dbSNP
rs1461477730 1181 dbSNP
rs1193291307 1187 dbSNP
rs966284850 1192 dbSNP
rs755627463 1196 dbSNP
rs562093514 1197 dbSNP
rs1250050499 1199 dbSNP
rs569057639 1218 dbSNP
rs967074762 1220 dbSNP
rs977138046 1221 dbSNP
rs777575000 1239 dbSNP
rs1310763233 1244 dbSNP
rs529999057 1245 dbSNP
rs1026459599 1256 dbSNP
rs950891192 1257 dbSNP
rs1413012972 1258 dbSNP
rs1292701837 1264 dbSNP
rs1341419293 1266 dbSNP
rs1379957407 1274 dbSNP
rs1384202443 1280 dbSNP
rs749243333 1283 dbSNP
rs957130302 1284 dbSNP
rs192423082 1290 dbSNP
rs970458291 1293 dbSNP
rs1392197282 1302 dbSNP
rs1307272226 1305 dbSNP
rs985946486 1308 dbSNP
rs536325952 1314 dbSNP
rs910419450 1317 dbSNP
rs1184163226 1322 dbSNP
rs944617952 1324 dbSNP
rs980092545 1325 dbSNP
rs928629374 1328 dbSNP
rs1206301917 1333 dbSNP
rs1342435364 1345 dbSNP
rs1258292115 1353 dbSNP
rs1276281355 1358 dbSNP
rs1224635376 1373 dbSNP
rs563457527 1375 dbSNP
rs146231888 1376 dbSNP
rs1325393313 1380 dbSNP
rs184820464 1383 dbSNP
rs1397781619 1384 dbSNP
rs989148311 1391 dbSNP
rs913053706 1396 dbSNP
rs778743720 1399 dbSNP
rs746126268 1412 dbSNP
rs1488435261 1418 dbSNP
rs1042785248 1423 dbSNP
rs888513514 1426 dbSNP
rs1166321220 1427 dbSNP
rs868457452 1434 dbSNP
rs941477682 1445 dbSNP
rs1417196060 1450 dbSNP
rs565455193 1453 dbSNP
rs1056362021 1457 dbSNP
rs1167000631 1465 dbSNP
rs894683828 1467 dbSNP
rs1014883883 1476 dbSNP
rs1427716249 1481 dbSNP
rs1024571271 1486 dbSNP
rs942450469 1490 dbSNP
rs1040671887 1491 dbSNP
rs528208690 1493 dbSNP
rs550219734 1497 dbSNP
rs1193752172 1499 dbSNP
rs188409599 1509 dbSNP
rs760761795 1511 dbSNP
rs1265576477 1512 dbSNP
rs1026592134 1514 dbSNP
rs1332589835 1516 dbSNP
rs1032704783 1517 dbSNP
rs1410234202 1524 dbSNP
rs1352153813 1532 dbSNP
rs568002523 1534 dbSNP
rs957100952 1539 dbSNP
rs985917114 1552 dbSNP
rs768718273 1554 dbSNP
rs1016449380 1556 dbSNP
rs1402148211 1563 dbSNP
rs970128754 1567 dbSNP
rs965913528 1571 dbSNP
rs191379402 1575 dbSNP
rs976376701 1577 dbSNP
rs919200567 1578 dbSNP
rs1160612768 1582 dbSNP
rs1361454765 1583 dbSNP
rs929249164 1604 dbSNP
rs1473838046 1611 dbSNP
rs982734153 1614 dbSNP
rs1362489535 1622 dbSNP
rs1181519215 1623 dbSNP
rs1436875073 1629 dbSNP
rs1267528469 1645 dbSNP
rs1220208200 1663 dbSNP
rs980613845 1664 dbSNP
rs1228974497 1665 dbSNP
rs1303800543 1669 dbSNP
rs1277617478 1670 dbSNP
rs376370449 1675 dbSNP
rs1035667760 1687 dbSNP
rs1325718686 1692 dbSNP
rs941448285 1697 dbSNP
rs1055887269 1702 dbSNP
rs139311496 1704 dbSNP
rs1459337848 1706 dbSNP
rs35546439 1715 dbSNP
rs1383363114 1718 dbSNP
rs1158355901 1722 dbSNP
rs1217233958 1734 dbSNP
rs3780021 1737 dbSNP
rs1485315709 1750 dbSNP
rs1195165203 1754 dbSNP
rs1452153034 1759 dbSNP
rs1251913915 1769 dbSNP
rs1208800156 1772 dbSNP
rs540053007 1774 dbSNP
rs903420517 1784 dbSNP
rs942440959 1790 dbSNP
rs147789363 1792 dbSNP
rs999140406 1810 dbSNP
rs1232446937 1812 dbSNP
rs150962338 1836 dbSNP
rs929672162 1837 dbSNP
rs1380777022 1842 dbSNP
rs892809440 1848 dbSNP
rs1421599183 1854 dbSNP
rs1048003247 1864 dbSNP
rs1415525826 1868 dbSNP
rs534118592 1878 dbSNP
rs1172158873 1879 dbSNP
rs1432546672 1882 dbSNP
rs1344855343 1903 dbSNP
rs573351726 1904 dbSNP
rs1007281403 1907 dbSNP
rs762370662 1914 dbSNP
rs1476087592 1919 dbSNP
rs1239837835 1922 dbSNP
rs558526999 1932 dbSNP
rs966248310 1940 dbSNP
rs975924205 1942 dbSNP
rs1282269955 1944 dbSNP
rs542391096 1950 dbSNP
rs1347434291 1952 dbSNP
rs1275570675 1955 dbSNP
rs950629681 1956 dbSNP
rs1369230190 1960 dbSNP
rs1337590668 1975 dbSNP
rs1269642440 1986 dbSNP
rs1449490210 1989 dbSNP
rs529471189 2003 dbSNP
rs1414479717 2014 dbSNP
rs371206384 2016 dbSNP
rs1374511666 2024 dbSNP
rs1168888599 2026 dbSNP
rs1310644687 2028 dbSNP
rs1411262734 2039 dbSNP
rs1001614546 2041 dbSNP
rs1416849175 2044 dbSNP
rs941374922 2054 dbSNP
rs1224995068 2064 dbSNP
rs1281458651 2072 dbSNP
rs1259445100 2074 dbSNP
rs1185568515 2075 dbSNP
rs185058883 2087 dbSNP
rs991957473 2107 dbSNP
rs576979449 2110 dbSNP
rs915978276 2119 dbSNP
rs950205535 2128 dbSNP
rs1305980286 2136 dbSNP
rs549337449 2137 dbSNP
rs1045890850 2139 dbSNP
rs1337594798 2141 dbSNP
rs924812066 2147 dbSNP
rs988805973 2150 dbSNP
rs1351527175 2152 dbSNP
rs756255962 2156 dbSNP
rs1300258685 2159 dbSNP
rs543655024 2168 dbSNP
rs1443994007 2181 dbSNP
rs1352343324 2182 dbSNP
rs544121770 2189 dbSNP
rs1238749833 2198 dbSNP
rs1419963724 2215 dbSNP
rs563460143 2228 dbSNP
rs1471092584 2231 dbSNP
rs968565155 2234 dbSNP
rs978665336 2247 dbSNP
rs911027616 2254 dbSNP
rs964248258 2255 dbSNP
rs892776738 2257 dbSNP
rs1178713786 2264 dbSNP
rs1007246211 2269 dbSNP
rs1479790415 2274 dbSNP
rs566027150 2286 dbSNP
rs976526995 2293 dbSNP
rs1232453831 2299 dbSNP
rs1222446607 2312 dbSNP
rs1039134864 2317 dbSNP
rs901580751 2365 dbSNP
rs532301754 2367 dbSNP
rs1175606316 2377 dbSNP
rs1407306839 2378 dbSNP
rs922381632 2380 dbSNP
rs1026104359 2382 dbSNP
rs1370766745 2394 dbSNP
rs950557923 2395 dbSNP
rs534947515 2398 dbSNP
rs909567752 2403 dbSNP
rs189420177 2411 dbSNP
rs959303589 2414 dbSNP
rs1392480555 2418 dbSNP
rs906011697 2427 dbSNP
rs1002148514 2445 dbSNP
rs752329716 2446 dbSNP
rs1461250637 2460 dbSNP
rs1057209091 2466 dbSNP
rs749577560 2487 dbSNP
rs1192047494 2489 dbSNP
rs879047479 2490 dbSNP
rs559167474 2493 dbSNP
rs1213082251 2505 dbSNP
rs1262974202 2507 dbSNP
rs1465746053 2507 dbSNP
rs755645287 2508 dbSNP
rs1316745910 2510 dbSNP
rs1020216259 2513 dbSNP
rs1234657974 2517 dbSNP
rs1372713393 2522 dbSNP
rs772817420 2529 dbSNP
rs528161917 2531 dbSNP
rs1000054599 2532 dbSNP
rs1371967594 2535 dbSNP
rs1228339084 2536 dbSNP
rs182051259 2542 dbSNP
rs1174013459 2543 dbSNP
rs753766263 2549 dbSNP
rs1393425186 2550 dbSNP
rs771085557 2556 dbSNP
rs963905589 2561 dbSNP
rs976959309 2562 dbSNP
rs922465728 2573 dbSNP
rs1332167416 2578 dbSNP
rs139535191 2580 dbSNP
rs1212861505 2595 dbSNP
rs530444707 2596 dbSNP
rs1258443461 2600 dbSNP
rs1213394818 2607 dbSNP
rs570089760 2611 dbSNP
rs951087784 2615 dbSNP
rs1232962813 2619 dbSNP
rs982542417 2623 dbSNP
rs1202351353 2624 dbSNP
rs1232430456 2625 dbSNP
rs1297061467 2632 dbSNP
rs1380512880 2635 dbSNP
rs1361112405 2656 dbSNP
rs1313262844 2667 dbSNP
rs1473173874 2668 dbSNP
rs909536583 2671 dbSNP
rs1173300387 2672 dbSNP
rs941031139 2680 dbSNP
rs1037952957 2682 dbSNP
rs1474972870 2685 dbSNP
rs1190552746 2698 dbSNP
rs1171888159 2708 dbSNP
rs1257235596 2722 dbSNP
rs556369634 2723 dbSNP
rs927569475 2729 dbSNP
rs1252563981 2732 dbSNP
rs1408778886 2742 dbSNP
rs1306876542 2746 dbSNP
rs1328791970 2753 dbSNP
rs937615750 2755 dbSNP
rs1353372545 2756 dbSNP
rs1448163951 2762 dbSNP
rs1312041950 2776 dbSNP
rs1314129739 2779 dbSNP
rs1392242976 2785 dbSNP
rs574615990 2790 dbSNP
rs1353232060 2811 dbSNP
rs1296528806 2812 dbSNP
rs1461511814 2818 dbSNP
rs1419240280 2824 dbSNP
rs1167800902 2837 dbSNP
rs991033118 2856 dbSNP
rs1057473746 2863 dbSNP
rs896004115 2871 dbSNP
rs918071841 2872 dbSNP
rs1278676819 2874 dbSNP
rs201984233 2875 dbSNP
rs1010245717 2880 dbSNP
rs1456968247 2881 dbSNP
rs1273234331 2884 dbSNP
rs1215555800 2888 dbSNP
rs1332571649 2900 dbSNP
rs1292464374 2902 dbSNP
rs1239415271 2904 dbSNP
rs1337788989 2921 dbSNP
rs1041811036 2925 dbSNP
rs1391021462 2945 dbSNP
rs1395367381 2950 dbSNP
rs1328004832 2954 dbSNP
rs1460347971 2958 dbSNP
rs1394298836 2962 dbSNP
rs904513572 2966 dbSNP
rs1212528184 2967 dbSNP
rs1272206817 2975 dbSNP
rs1362399531 2984 dbSNP
rs1043869 2998 dbSNP
rs16890649 3013 dbSNP
rs1255459133 3017 dbSNP
rs778671667 3019 dbSNP
rs1253148656 3020 dbSNP
rs1485508119 3020 dbSNP
rs1194644313 3035 dbSNP
rs1374946381 3036 dbSNP
rs964267900 3037 dbSNP
rs1289013270 3038 dbSNP
rs1205526826 3042 dbSNP
rs998132503 3063 dbSNP
rs28534938 3064 dbSNP
rs1029881470 3065 dbSNP
rs1371990664 3065 dbSNP
rs28485888 3065 dbSNP
rs1305720528 3075 dbSNP
rs766715909 3077 dbSNP
rs1438748933 3078 dbSNP
rs1370934781 3099 dbSNP
rs540162873 3104 dbSNP
rs1043873 3109 dbSNP
rs1402919001 3117 dbSNP
rs186643502 3118 dbSNP
rs1314218662 3122 dbSNP
rs1373089608 3125 dbSNP
rs1413849876 3127 dbSNP
rs1395241613 3128 dbSNP
rs1175009544 3135 dbSNP
rs149661241 3148 dbSNP
rs188858760 3149 dbSNP
rs776203478 3162 dbSNP
rs535637167 3171 dbSNP
rs1448660190 3181 dbSNP
rs35438734 3183 dbSNP
rs1327759463 3193 dbSNP
rs1215534948 3199 dbSNP
rs555642747 3200 dbSNP
rs76980974 3205 dbSNP
rs575568993 3206 dbSNP
rs1345688708 3210 dbSNP
rs1270838628 3215 dbSNP
rs1433569976 3221 dbSNP
rs1325137867 3225 dbSNP
rs1236362261 3231 dbSNP
rs1415739112 3241 dbSNP
rs1375705073 3256 dbSNP
rs1314383839 3267 dbSNP
rs7442 3272 dbSNP
rs771229040 3276 dbSNP
rs1423941437 3279 dbSNP
rs1167981292 3280 dbSNP
rs1347267117 3281 dbSNP
rs1192690143 3284 dbSNP
rs769414238 3290 dbSNP
rs1259312596 3293 dbSNP
rs1209078147 3312 dbSNP
rs1273820554 3318 dbSNP
rs181993229 3318 dbSNP
rs1216335858 3322 dbSNP
rs1338052459 3333 dbSNP
rs1278070614 3341 dbSNP
rs926312453 3350 dbSNP
rs937563878 3350 dbSNP
rs768679735 3357 dbSNP
rs993105370 3357 dbSNP
rs1358161171 3365 dbSNP
rs1328957194 3375 dbSNP
rs1411102683 3379 dbSNP
rs1445446137 3385 dbSNP
rs776752230 3386 dbSNP
rs1169923189 3387 dbSNP
rs186223423 3391 dbSNP
rs1419832657 3393 dbSNP
rs1185458898 3401 dbSNP
rs1247627307 3409 dbSNP
rs1472594153 3413 dbSNP
rs1233628496 3419 dbSNP
rs1456018697 3420 dbSNP
rs1172299671 3422 dbSNP
rs768329435 3423 dbSNP
rs904584164 3433 dbSNP
rs1257473900 3434 dbSNP
rs1433565309 3441 dbSNP
rs1158599373 3472 dbSNP
rs936105169 3478 dbSNP
rs545731362 3480 dbSNP
rs1378014165 3484 dbSNP
rs1279818210 3490 dbSNP
rs1443880619 3498 dbSNP
rs1040088782 3510 dbSNP
rs1330073453 3514 dbSNP
rs1461904864 3523 dbSNP
rs1396508886 3525 dbSNP
rs1162565169 3531 dbSNP
rs1317423401 3535 dbSNP
rs899844724 3537 dbSNP
rs1179213931 3551 dbSNP
rs998498053 3554 dbSNP
rs1237710826 3555 dbSNP
rs1029604434 3561 dbSNP
rs777091950 3566 dbSNP
rs1221438559 3567 dbSNP
rs1317937357 3571 dbSNP
rs1286773333 3583 dbSNP
rs770364962 3584 dbSNP
rs1370111152 3585 dbSNP
rs1016785303 3586 dbSNP
rs559080258 3589 dbSNP
rs1307903249 3590 dbSNP
rs980564617 3599 dbSNP
rs1033733091 3608 dbSNP
rs558105177 3609 dbSNP
rs572701217 3612 dbSNP
rs1291110312 3614 dbSNP
rs917536894 3621 dbSNP
rs759868873 3627 dbSNP
rs541494234 3628 dbSNP
rs1174375572 3641 dbSNP
rs1440793249 3647 dbSNP
rs1251180977 3656 dbSNP
rs977521200 3659 dbSNP
rs1364994870 3669 dbSNP
rs11337 3676 dbSNP
rs1214007665 3677 dbSNP
rs115198548 3680 dbSNP
rs1039819492 3682 dbSNP
rs189900604 3684 dbSNP
rs564154653 3688 dbSNP
rs533658367 3691 dbSNP
rs1462851470 3694 dbSNP
rs1323593462 3696 dbSNP
rs547327592 3703 dbSNP
rs1393707310 3704 dbSNP
rs1360161666 3708 dbSNP
rs1397871216 3708 dbSNP
rs1391866080 3710 dbSNP
rs1436807252 3722 dbSNP
rs567023937 3723 dbSNP
rs1376049367 3728 dbSNP
rs1175376322 3729 dbSNP
rs1429632110 3733 dbSNP
rs1309331884 3737 dbSNP
rs1185165688 3741 dbSNP
rs763414274 3751 dbSNP
rs1258618115 3758 dbSNP
rs1211242493 3774 dbSNP
rs1334044961 3775 dbSNP
rs1486442001 3791 dbSNP
rs3604 3802 dbSNP
rs1253757142 3806 dbSNP
rs1231807273 3808 dbSNP
rs887729196 3812 dbSNP
rs1238344918 3817 dbSNP
rs536078306 3818 dbSNP
rs1337174057 3819 dbSNP
rs1212233897 3820 dbSNP
rs1297580018 3821 dbSNP
rs1216684431 3825 dbSNP
rs1272916614 3834 dbSNP
rs766845051 3836 dbSNP
rs1293662494 3838 dbSNP
rs1416867124 3839 dbSNP
rs1198069550 3842 dbSNP
rs543484081 3851 dbSNP
rs1416799488 3856 dbSNP
rs1462517210 3858 dbSNP
rs1356332018 3870 dbSNP
rs1169224231 3876 dbSNP
rs1477772716 3876 dbSNP
rs563779572 3879 dbSNP
rs1004134428 3883 dbSNP
rs1190428785 3886 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51125.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000405786.2 | 3UTR | UAUAUUACUAAUUUUUAACUAUCCCUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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