pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FKBP1A   
Synonyms FKBP-12, FKBP-1A, FKBP1, FKBP12, PKC12, PKCI2, PPIASE
Description FK506 binding protein 1A
Transcript NM_000801   
Other Transcripts NM_054014   
Expression
Putative miRNA Targets on FKBP1A
3'UTR of FKBP1A
(miRNA target sites are highlighted)
>FKBP1A|NM_000801|3'UTR
   1 CAGGAATGGCCTCCTCCCTTAGCTCCCTGTTCTTGGATCTGCCATGGAGGGATCTGGTGCCTCCAGACATGTGCACATGA
  81 ATCCATATGGAGCTTTTCCTGATGTTCCACTCCACTTTGTATAGACATCTGCCCTGACTGAATGTGTTCTGTCACTCAGC
 161 TTTGCTTCCGACACCTCTGTTTCCTCTTCCCCTTTCTCCTCGTATGTGTGTTTACCTAAACTATATGCCATAAACCTCAA
 241 GTTATTCATTTTATTTTGTTTTCATTTTGGGGTGAAGATTCAGTTTCAGTCTTTTGGATATAGGTTTCCAATTAAGTACA
 321 TGGTCAAGTATTAACAGCACAAGTGGTAGGTTAACATTAGAATAGGAATTGGTGTTGGGGGGGGGGTTTGCAAGAATATT
 401 TTATTTTAATTTTTTGGATGAAATTTTTATCTATTATATATTAAACATTCTTGCTGCTGCGCTGCAAAGCCATAGCAGAT
 481 TTGAGGCGCTGTTGAGGACTGAATTACTCTCCAAGTTGAGAGATGTCTTTGGGTTAAATTAAAAGCCCTACCTAAAACTG
 561 AGGTGGGGATGGGGAGAGCCTTTGCCTCCACCATTCCCACCCACCCTCCCCTTAAACCCTCTGCCTTTGAAAGTAGATCA
 641 TGTTCACTGCAATGCTGGACACTACAGGTATCTGTCCCTGGGCCAGCAGGGACCTCTGAAGCCTTCTTTGTGGCCTTTTT
 721 TTTTTTTCATCCTGTGGTTTTTCTAATGGACTTTCAGGAATTTTGTAATCTCATAACTTTCCAAGCTCCACCACTTCCTA
 801 AATCTTAAGAACTTTAATTGACAGTTTCAATTGAAGGTGCTGTTTGTAGACTTAACACCCAGTGAAAGCCCAGCCATCAT
 881 GACAAATCCTTGAATGTTCTCTTAAGAAAATGATGCTGGTCATCGCAGCTTCAGCATCTCCTGTTTTTTGATGCTTGGCT
 961 CCCTCTGCTGATCTCAGTTTCCTGGCTTTTCCTCCCTCAGCCCCTTCTCACCCCTTTGCTGTCCTGTGTAGTGATTTGGT
1041 GAGAAATCGTTGCTGCACCCTTCCCCCAGCACCATTTATGAGTCTCAAGTTTTATTATTGCAATAAAAGTGCTTTATGCC
1121 GGCTTTTCTCAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            :|||||| ||||||| 
Target 5' ttTTGGATG-AAATTTTt 3'
412 - 428 163.00 -11.80
2
miRNA  3' aggACCUA-CGUUUAAAAu 5'
             || :|  |||:|||| 
Target 5' ttaTGAGTCTCAAGTTTTa 3'
1076 - 1094 131.00 -5.50
3
miRNA  3' aggaccUA-CGUUUAAAau 5'
                || |||:||||  
Target 5' aaagccATAGCAGATTTga 3'
466 - 484 116.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN508282 6 COSMIC
COSN21101391 53 COSMIC
COSN31597900 61 COSMIC
COSN30455431 72 COSMIC
COSN30506581 81 COSMIC
COSN30146274 82 COSMIC
COSN30504794 88 COSMIC
COSN30539994 98 COSMIC
COSN20079712 137 COSMIC
COSN30144162 138 COSMIC
COSN30604181 141 COSMIC
COSN7996695 335 COSMIC
COSN1864999 1391 COSMIC
COSN15791127 1662 COSMIC
COSN9395785 1800 COSMIC
COSN24522373 1851 COSMIC
COSN24522372 1896 COSMIC
COSN30700599 1980 COSMIC
COSN15632046 2047 COSMIC
COSN22584121 2072 COSMIC
COSN29461856 2082 COSMIC
COSN28671098 2084 COSMIC
COSN18716634 2136 COSMIC
COSN30128734 2172 COSMIC
COSN26669012 2226 COSMIC
COSN23015465 2248 COSMIC
COSN16670532 2286 COSMIC
COSN22179274 2299 COSMIC
COSN26668131 2303 COSMIC
COSN20116199 2380 COSMIC
COSN16130673 2430 COSMIC
COSN31529437 2434 COSMIC
COSN31540379 2464 COSMIC
COSN19596901 2554 COSMIC
COSN31567830 2557 COSMIC
COSN31540386 2579 COSMIC
COSN30543520 2582 COSMIC
COSN30536300 2589 COSMIC
COSN20632018 2654 COSMIC
COSN31536866 2658 COSMIC
COSN20116197 2718 COSMIC
COSN31487025 2758 COSMIC
COSN30132178 2808 COSMIC
COSN30132181 2830 COSMIC
COSN30143875 2887 COSMIC
COSN8610482 2924 COSMIC
COSN28634282 2928 COSMIC
COSN31542939 2941 COSMIC
COSN20771054 3069 COSMIC
COSN26666739 3079 COSMIC
COSN30119695 3117 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747088929 3 dbSNP
rs1396215201 4 dbSNP
rs777836202 7 dbSNP
rs758493076 14 dbSNP
rs1382484572 16 dbSNP
rs758438227 18 dbSNP
rs1189943572 22 dbSNP
rs748425374 28 dbSNP
rs1310979517 31 dbSNP
rs1247635454 33 dbSNP
rs779111159 34 dbSNP
rs755342056 36 dbSNP
rs754306267 44 dbSNP
rs766982049 46 dbSNP
rs756749310 50 dbSNP
rs749882555 61 dbSNP
rs752771984 64 dbSNP
rs767064187 69 dbSNP
rs1387724053 70 dbSNP
rs931978249 76 dbSNP
rs552945753 77 dbSNP
rs966865292 79 dbSNP
rs1362781248 82 dbSNP
rs1322058027 85 dbSNP
rs761318984 91 dbSNP
rs1242837438 95 dbSNP
rs762834082 98 dbSNP
rs763693915 99 dbSNP
rs184089222 106 dbSNP
rs879187230 107 dbSNP
rs966506788 108 dbSNP
rs569192484 112 dbSNP
rs1001917033 118 dbSNP
rs552505934 127 dbSNP
rs1301897423 128 dbSNP
rs968297361 130 dbSNP
rs1450840887 138 dbSNP
rs1185672494 139 dbSNP
rs1366509769 140 dbSNP
rs1024899647 142 dbSNP
rs1294121180 145 dbSNP
rs538660594 149 dbSNP
rs1234061364 152 dbSNP
rs1461892278 154 dbSNP
rs993384931 157 dbSNP
rs897678969 158 dbSNP
rs1262945430 170 dbSNP
rs1037561019 180 dbSNP
rs1248374170 185 dbSNP
rs941827386 186 dbSNP
rs1184690633 187 dbSNP
rs1427271925 195 dbSNP
rs1319307327 196 dbSNP
rs1174764707 197 dbSNP
rs1285541005 206 dbSNP
rs112411527 213 dbSNP
rs775406393 215 dbSNP
rs536546656 221 dbSNP
rs1034415625 222 dbSNP
rs1287562876 226 dbSNP
rs1002666610 229 dbSNP
rs922568228 230 dbSNP
rs530238590 242 dbSNP
rs1282762747 243 dbSNP
rs573596162 247 dbSNP
rs36059165 253 dbSNP
rs1328894738 260 dbSNP
rs1230432970 264 dbSNP
rs1269070774 267 dbSNP
rs1004636542 294 dbSNP
rs914143656 296 dbSNP
rs2296039 297 dbSNP
rs1213393989 299 dbSNP
rs550775930 307 dbSNP
rs1488781474 311 dbSNP
rs887714819 319 dbSNP
rs1198022789 325 dbSNP
rs958444603 333 dbSNP
rs531068081 334 dbSNP
rs1159429969 335 dbSNP
rs6105016 339 dbSNP
rs1048937882 343 dbSNP
rs565239729 344 dbSNP
rs980895202 358 dbSNP
rs1352083158 359 dbSNP
rs1458835287 382 dbSNP
rs931880189 385 dbSNP
rs1303127526 389 dbSNP
rs1343702275 393 dbSNP
rs760850676 397 dbSNP
rs970431476 400 dbSNP
rs2296038 422 dbSNP
rs1289152332 424 dbSNP
rs1372891968 424 dbSNP
rs1221813532 430 dbSNP
rs1291806821 434 dbSNP
rs6041759 434 dbSNP
rs993143353 435 dbSNP
rs1289581682 436 dbSNP
rs897773655 437 dbSNP
rs1040773366 439 dbSNP
rs576754673 441 dbSNP
rs560128655 442 dbSNP
rs1183277470 443 dbSNP
rs1397594898 443 dbSNP
rs878863207 443 dbSNP
rs1425747360 447 dbSNP
rs944843515 454 dbSNP
rs1378553568 463 dbSNP
rs923988121 468 dbSNP
rs1165502428 469 dbSNP
rs888916003 477 dbSNP
rs775688506 478 dbSNP
rs1286224893 484 dbSNP
rs539929733 485 dbSNP
rs1245064840 489 dbSNP
rs932706905 493 dbSNP
rs537173605 520 dbSNP
rs6105015 528 dbSNP
rs1041054005 532 dbSNP
rs1435618315 541 dbSNP
rs112781253 545 dbSNP
rs1237758625 547 dbSNP
rs959870980 551 dbSNP
rs1352066292 561 dbSNP
rs1283301778 567 dbSNP
rs1445543338 569 dbSNP
rs1183384155 571 dbSNP
rs914195107 576 dbSNP
rs1359776052 580 dbSNP
rs6105014 583 dbSNP
rs1169043153 585 dbSNP
rs563775262 585 dbSNP
rs1313885525 586 dbSNP
rs1336398371 591 dbSNP
rs1407120235 591 dbSNP
rs771740738 592 dbSNP
rs926754889 612 dbSNP
rs980564471 613 dbSNP
rs970905942 622 dbSNP
rs1269580649 627 dbSNP
rs1002919698 630 dbSNP
rs1220454797 636 dbSNP
rs917658546 638 dbSNP
rs191687971 644 dbSNP
rs1460616372 648 dbSNP
rs1203393980 658 dbSNP
rs1241655768 659 dbSNP
rs961701324 666 dbSNP
rs1016200159 668 dbSNP
rs1006524439 670 dbSNP
rs1014603928 671 dbSNP
rs1430196189 675 dbSNP
rs953257756 685 dbSNP
rs878915385 692 dbSNP
rs77324343 701 dbSNP
rs1289163038 702 dbSNP
rs997347330 706 dbSNP
rs1358490898 719 dbSNP
rs1317468857 725 dbSNP
rs1305083602 731 dbSNP
rs527979609 738 dbSNP
rs1425342664 745 dbSNP
rs1048864417 749 dbSNP
rs1283405269 756 dbSNP
rs1221284678 769 dbSNP
rs1269693971 773 dbSNP
rs901300365 777 dbSNP
rs77748693 781 dbSNP
rs1430468781 782 dbSNP
rs1261575208 788 dbSNP
rs900408933 791 dbSNP
rs1445803532 793 dbSNP
rs1040383406 794 dbSNP
rs1201695204 796 dbSNP
rs1269668684 799 dbSNP
rs1420680638 799 dbSNP
rs1480183865 803 dbSNP
rs1009526191 806 dbSNP
rs759252617 807 dbSNP
rs892433029 811 dbSNP
rs1487608720 815 dbSNP
rs1271657597 822 dbSNP
rs1406988639 823 dbSNP
rs1303742225 827 dbSNP
rs1344312349 829 dbSNP
rs944665126 845 dbSNP
rs924038821 851 dbSNP
rs538954934 853 dbSNP
rs7271475 854 dbSNP
rs150388711 860 dbSNP
rs367707629 863 dbSNP
rs991389229 864 dbSNP
rs1212140030 866 dbSNP
rs1293224179 870 dbSNP
rs949569695 874 dbSNP
rs1197375911 875 dbSNP
rs1296053485 877 dbSNP
rs917710771 882 dbSNP
rs1181413281 884 dbSNP
rs1338387251 884 dbSNP
rs959658862 890 dbSNP
rs928170187 895 dbSNP
rs981152058 900 dbSNP
rs62187547 910 dbSNP
rs1309343223 911 dbSNP
rs138330484 934 dbSNP
rs1004613695 937 dbSNP
rs908857601 938 dbSNP
rs1304492202 941 dbSNP
rs1291796037 949 dbSNP
rs984456535 952 dbSNP
rs1218567893 954 dbSNP
rs953450131 961 dbSNP
rs1316271164 963 dbSNP
rs1028902930 968 dbSNP
rs531004820 977 dbSNP
rs1220295142 978 dbSNP
rs1253122255 980 dbSNP
rs1463754472 984 dbSNP
rs997799445 992 dbSNP
rs951796395 994 dbSNP
rs1248771748 1003 dbSNP
rs565514899 1006 dbSNP
rs1355287815 1007 dbSNP
rs1384484316 1036 dbSNP
rs746257682 1048 dbSNP
rs1170251614 1050 dbSNP
rs965812242 1052 dbSNP
rs770491539 1059 dbSNP
rs996378319 1064 dbSNP
rs1296019655 1068 dbSNP
rs1432170656 1069 dbSNP
rs892485363 1070 dbSNP
rs1337835994 1073 dbSNP
rs900418243 1076 dbSNP
rs1200766588 1084 dbSNP
rs1054219589 1086 dbSNP
rs1019254320 1099 dbSNP
rs778899872 1100 dbSNP
rs1226791598 1102 dbSNP
rs1008913716 1103 dbSNP
rs1045316315 1104 dbSNP
rs949532052 1117 dbSNP
rs565675117 1119 dbSNP
rs902542804 1123 dbSNP
rs1042392026 1131 dbSNP
rs1188198122 1136 dbSNP
rs1262349951 1140 dbSNP
rs541866079 1141 dbSNP
rs147053895 1149 dbSNP
rs946821825 1158 dbSNP
rs559866903 1159 dbSNP
rs1315819087 1166 dbSNP
rs1264706274 1168 dbSNP
rs1405796157 1170 dbSNP
rs940446901 1172 dbSNP
rs1055302052 1175 dbSNP
rs938154160 1186 dbSNP
rs1224048836 1189 dbSNP
rs112206153 1196 dbSNP
rs982803199 1202 dbSNP
rs1381671009 1210 dbSNP
rs1299314980 1211 dbSNP
rs1293563931 1216 dbSNP
rs1325806242 1228 dbSNP
rs540240322 1230 dbSNP
rs1224340974 1239 dbSNP
rs1262825903 1240 dbSNP
rs940260555 1244 dbSNP
rs781452743 1246 dbSNP
rs141671591 1248 dbSNP
rs1261185595 1253 dbSNP
rs34621638 1253 dbSNP
rs1485519189 1254 dbSNP
rs1184748272 1257 dbSNP
rs983069715 1272 dbSNP
rs757422077 1280 dbSNP
rs1464445953 1284 dbSNP
rs1027775525 1291 dbSNP
rs974618981 1295 dbSNP
rs1346269974 1299 dbSNP
rs187583080 1310 dbSNP
rs560971035 1311 dbSNP
rs1405631403 1314 dbSNP
rs1282816257 1318 dbSNP
rs975991516 1334 dbSNP
rs1225218243 1338 dbSNP
rs7353834 1347 dbSNP
rs1018767023 1348 dbSNP
rs544371451 1359 dbSNP
rs182894805 1370 dbSNP
rs1177551965 1385 dbSNP
rs1008841776 1393 dbSNP
rs902427531 1397 dbSNP
rs1469758259 1402 dbSNP
rs1376404768 1403 dbSNP
rs1020975830 1410 dbSNP
rs1221110027 1412 dbSNP
rs1266270830 1413 dbSNP
rs1020051385 1423 dbSNP
rs558741344 1433 dbSNP
rs1409149377 1446 dbSNP
rs6131418 1448 dbSNP
rs1418926663 1453 dbSNP
rs751809554 1456 dbSNP
rs893909905 1458 dbSNP
rs1032418542 1464 dbSNP
rs1001312018 1465 dbSNP
rs1444607057 1471 dbSNP
rs1280419397 1479 dbSNP
rs905150308 1485 dbSNP
rs1456121309 1488 dbSNP
rs1055590827 1490 dbSNP
rs1317004318 1501 dbSNP
rs1244783264 1502 dbSNP
rs1024313135 1509 dbSNP
rs938098490 1514 dbSNP
rs1439098780 1521 dbSNP
rs772611152 1521 dbSNP
rs1204768720 1523 dbSNP
rs1438068652 1524 dbSNP
rs567049924 1541 dbSNP
rs1204012656 1542 dbSNP
rs1231957376 1544 dbSNP
rs1480476080 1546 dbSNP
rs906720667 1548 dbSNP
rs1387587926 1552 dbSNP
rs1254143308 1561 dbSNP
rs1445733521 1562 dbSNP
rs538526097 1568 dbSNP
rs896724007 1574 dbSNP
rs1046558180 1576 dbSNP
rs1329712043 1577 dbSNP
rs1354178891 1587 dbSNP
rs1439691118 1588 dbSNP
rs1338498922 1592 dbSNP
rs1383313694 1605 dbSNP
rs940312807 1608 dbSNP
rs940833643 1619 dbSNP
rs908763313 1620 dbSNP
rs887563545 1621 dbSNP
rs1237870841 1627 dbSNP
rs983079521 1628 dbSNP
rs1205220157 1636 dbSNP
rs1245330951 1642 dbSNP
rs1183515814 1645 dbSNP
rs34390288 1645 dbSNP
rs1308551724 1646 dbSNP
rs573106037 1654 dbSNP
rs930286475 1657 dbSNP
rs553050231 1661 dbSNP
rs536248586 1663 dbSNP
rs920368115 1667 dbSNP
rs931648225 1675 dbSNP
rs1464238956 1679 dbSNP
rs1178918136 1685 dbSNP
rs764089904 1687 dbSNP
rs147918373 1688 dbSNP
rs1332040006 1692 dbSNP
rs976422508 1694 dbSNP
rs944649326 1698 dbSNP
rs547016737 1699 dbSNP
rs1363877126 1700 dbSNP
rs964474155 1705 dbSNP
rs748632557 1713 dbSNP
rs372842740 1714 dbSNP
rs913137026 1716 dbSNP
rs1449263290 1732 dbSNP
rs1019232892 1738 dbSNP
rs1441630086 1745 dbSNP
rs987293473 1748 dbSNP
rs1254071049 1751 dbSNP
rs966620998 1752 dbSNP
rs1206838558 1761 dbSNP
rs111626666 1765 dbSNP
rs1430258309 1766 dbSNP
rs1020861016 1767 dbSNP
rs572967039 1768 dbSNP
rs771374028 1772 dbSNP
rs1032842670 1775 dbSNP
rs537183856 1779 dbSNP
rs571726416 1780 dbSNP
rs1317624946 1781 dbSNP
rs866527061 1789 dbSNP
rs1361912138 1799 dbSNP
rs1358069055 1804 dbSNP
rs1033670474 1805 dbSNP
rs551973588 1809 dbSNP
rs1344499565 1811 dbSNP
rs193254270 1817 dbSNP
rs1232939439 1818 dbSNP
rs1273416748 1821 dbSNP
rs1339088531 1826 dbSNP
rs1353357542 1830 dbSNP
rs1320611849 1832 dbSNP
rs1206229473 1841 dbSNP
rs969814434 1842 dbSNP
rs1023662702 1845 dbSNP
rs188751457 1864 dbSNP
rs1013580342 1876 dbSNP
rs1480212617 1879 dbSNP
rs143348361 1880 dbSNP
rs758482043 1894 dbSNP
rs1365310639 1896 dbSNP
rs752615152 1902 dbSNP
rs887376922 1906 dbSNP
rs1048596572 1914 dbSNP
rs1015182406 1916 dbSNP
rs1358564847 1918 dbSNP
rs1425954423 1918 dbSNP
rs1303265911 1923 dbSNP
rs1163815790 1927 dbSNP
rs765152315 1932 dbSNP
rs931568629 1939 dbSNP
rs1330546391 1940 dbSNP
rs1366501176 1955 dbSNP
rs1195013461 1956 dbSNP
rs1309103545 1958 dbSNP
rs887918095 1960 dbSNP
rs1248848488 1963 dbSNP
rs1292556733 1967 dbSNP
rs529713198 1970 dbSNP
rs1038693829 1971 dbSNP
rs149201864 1975 dbSNP
rs943145785 1979 dbSNP
rs911607525 1980 dbSNP
rs1180852571 1981 dbSNP
rs1378361949 1982 dbSNP
rs931726108 1984 dbSNP
rs987321301 1985 dbSNP
rs1490856781 1987 dbSNP
rs544299004 1991 dbSNP
rs530641430 1995 dbSNP
rs112687529 1998 dbSNP
rs1389530505 1998 dbSNP
rs762713394 2001 dbSNP
rs1426566132 2002 dbSNP
rs1188503100 2005 dbSNP
rs1447975505 2015 dbSNP
rs1250326748 2016 dbSNP
rs1384065755 2019 dbSNP
rs1189403421 2021 dbSNP
rs564894185 2026 dbSNP
rs1235779918 2027 dbSNP
rs1169224368 2036 dbSNP
rs900231969 2041 dbSNP
rs1468225547 2044 dbSNP
rs1392287813 2046 dbSNP
rs8392 2047 dbSNP
rs1280881535 2054 dbSNP
rs1227576613 2055 dbSNP
rs769654835 2057 dbSNP
rs1299570459 2060 dbSNP
rs1455038718 2062 dbSNP
rs944368233 2066 dbSNP
rs1378043002 2067 dbSNP
rs1259197422 2072 dbSNP
rs1300561995 2074 dbSNP
rs1253243541 2075 dbSNP
rs1449512650 2076 dbSNP
rs1187951436 2079 dbSNP
rs1198299009 2080 dbSNP
rs1375526444 2081 dbSNP
rs755407950 2082 dbSNP
rs6041749 2084 dbSNP
rs1392394986 2091 dbSNP
rs1171613169 2092 dbSNP
rs1242463543 2093 dbSNP
rs773117898 2098 dbSNP
rs1411973906 2099 dbSNP
rs1183826761 2101 dbSNP
rs1052927128 2102 dbSNP
rs935838301 2104 dbSNP
rs375283376 2106 dbSNP
rs772224870 2107 dbSNP
rs1482060322 2110 dbSNP
rs1276474108 2111 dbSNP
rs1337897400 2114 dbSNP
rs1471163358 2114 dbSNP
rs980327524 2115 dbSNP
rs1320729143 2116 dbSNP
rs1310054649 2119 dbSNP
rs1297775159 2120 dbSNP
rs553228856 2122 dbSNP
rs550532523 2124 dbSNP
rs1306929453 2128 dbSNP
rs755260902 2134 dbSNP
rs1256480911 2138 dbSNP
rs916646224 2141 dbSNP
rs1204079017 2142 dbSNP
rs1255296080 2155 dbSNP
rs1422899920 2159 dbSNP
rs1191432672 2172 dbSNP
rs992201376 2173 dbSNP
rs1261795152 2179 dbSNP
rs960658819 2180 dbSNP
rs145404495 2182 dbSNP
rs530800255 2182 dbSNP
rs1481594611 2187 dbSNP
rs1027846356 2192 dbSNP
rs756496309 2192 dbSNP
rs73581254 2193 dbSNP
rs1291206264 2194 dbSNP
rs776938605 2202 dbSNP
rs1275345816 2204 dbSNP
rs1196813428 2205 dbSNP
rs900283691 2207 dbSNP
rs752454371 2208 dbSNP
rs1300303227 2211 dbSNP
rs1256497160 2214 dbSNP
rs1040097127 2217 dbSNP
rs564998081 2224 dbSNP
rs1346652334 2227 dbSNP
rs537120656 2229 dbSNP
rs11712 2248 dbSNP
rs1435086993 2250 dbSNP
rs1329062398 2252 dbSNP
rs1330457373 2261 dbSNP
rs1190320929 2266 dbSNP
rs1052976810 2272 dbSNP
rs11550413 2275 dbSNP
rs1161832687 2286 dbSNP
rs1364897048 2290 dbSNP
rs529373359 2292 dbSNP
rs1296382519 2294 dbSNP
rs935958291 2297 dbSNP
rs1405763595 2300 dbSNP
rs558030239 2304 dbSNP
rs760809823 2313 dbSNP
rs1470926458 2314 dbSNP
rs573002082 2315 dbSNP
rs1172110894 2322 dbSNP
rs916670187 2323 dbSNP
rs1477081608 2327 dbSNP
rs1234875186 2328 dbSNP
rs1490387796 2330 dbSNP
rs1220373484 2332 dbSNP
rs1244629349 2334 dbSNP
rs773496036 2343 dbSNP
rs1179346765 2349 dbSNP
rs960709715 2351 dbSNP
rs183005812 2356 dbSNP
rs1157439463 2363 dbSNP
rs1387156350 2369 dbSNP
rs770618418 2379 dbSNP
rs397795937 2380 dbSNP
rs983838887 2380 dbSNP
rs566192347 2381 dbSNP
rs559491604 2382 dbSNP
rs1240647312 2383 dbSNP
rs529651885 2384 dbSNP
rs1278531291 2385 dbSNP
rs1018655649 2386 dbSNP
rs1308928924 2386 dbSNP
rs1008569706 2387 dbSNP
rs1280717298 2388 dbSNP
rs1245525023 2389 dbSNP
rs34401063 2390 dbSNP
rs756346750 2390 dbSNP
rs758498752 2390 dbSNP
rs879138498 2390 dbSNP
rs891478235 2390 dbSNP
rs77001193 2392 dbSNP
rs1052750099 2393 dbSNP
rs1463873569 2396 dbSNP
rs1338563749 2402 dbSNP
rs1375628824 2405 dbSNP
rs1000263220 2411 dbSNP
rs376131801 2411 dbSNP
rs575859500 2412 dbSNP
rs1363525530 2413 dbSNP
rs146670225 2414 dbSNP
rs1317613404 2422 dbSNP
rs948589309 2423 dbSNP
rs45473597 2424 dbSNP
rs895623307 2427 dbSNP
rs1443465773 2428 dbSNP
rs1210091172 2431 dbSNP
rs1056580937 2438 dbSNP
rs939441093 2441 dbSNP
rs1333417666 2443 dbSNP
rs1476470534 2444 dbSNP
rs1194575964 2445 dbSNP
rs1423199509 2447 dbSNP
rs45553532 2456 dbSNP
rs1412630427 2460 dbSNP
rs907945653 2462 dbSNP
rs550608954 2463 dbSNP
rs530480273 2464 dbSNP
rs190714238 2470 dbSNP
rs1346385271 2472 dbSNP
rs187106305 2474 dbSNP
rs1277124538 2475 dbSNP
rs369976663 2481 dbSNP
rs1378676132 2482 dbSNP
rs1185881613 2483 dbSNP
rs559156579 2491 dbSNP
rs1346223535 2493 dbSNP
rs1219154771 2494 dbSNP
rs542491861 2501 dbSNP
rs1483775402 2510 dbSNP
rs1448753937 2512 dbSNP
rs1217469515 2513 dbSNP
rs1262698572 2514 dbSNP
rs1019045637 2519 dbSNP
rs1487415653 2526 dbSNP
rs116729337 2527 dbSNP
rs955824951 2536 dbSNP
rs1441142647 2541 dbSNP
rs1449195702 2570 dbSNP
rs1170680104 2578 dbSNP
rs1477574810 2578 dbSNP
rs1410095606 2579 dbSNP
rs1031382497 2581 dbSNP
rs999869931 2582 dbSNP
rs904153091 2586 dbSNP
rs1406379786 2587 dbSNP
rs1323881646 2588 dbSNP
rs1344414829 2602 dbSNP
rs1233002976 2606 dbSNP
rs917790935 2610 dbSNP
rs991990932 2615 dbSNP
rs1306627466 2622 dbSNP
rs1285376442 2623 dbSNP
rs1351680599 2627 dbSNP
rs1224914166 2628 dbSNP
rs1450771175 2629 dbSNP
rs1803585 2633 dbSNP
rs116279343 2646 dbSNP
rs1158033961 2648 dbSNP
rs879207230 2654 dbSNP
rs1301978639 2661 dbSNP
rs1377943292 2664 dbSNP
rs578000764 2665 dbSNP
rs1445775446 2670 dbSNP
rs866378749 2672 dbSNP
rs1163421745 2675 dbSNP
rs1389597580 2677 dbSNP
rs895718244 2680 dbSNP
rs1321956679 2689 dbSNP
rs1379644523 2693 dbSNP
rs1448156884 2697 dbSNP
rs1057017409 2699 dbSNP
rs1346846351 2707 dbSNP
rs1298936662 2708 dbSNP
rs1266216999 2712 dbSNP
rs1355866925 2717 dbSNP
rs1274841667 2718 dbSNP
rs939826179 2720 dbSNP
rs748541864 2721 dbSNP
rs886562360 2722 dbSNP
rs1048236027 2723 dbSNP
rs930666919 2724 dbSNP
rs1413560545 2725 dbSNP
rs920560246 2726 dbSNP
rs79119937 2730 dbSNP
rs1313501285 2731 dbSNP
rs1456046502 2731 dbSNP
rs1491012395 2731 dbSNP
rs376816789 2731 dbSNP
rs547041142 2731 dbSNP
rs878978089 2731 dbSNP
rs1340006514 2734 dbSNP
rs1321933997 2738 dbSNP
rs1180427146 2748 dbSNP
rs879249241 2750 dbSNP
rs558231173 2754 dbSNP
rs542591675 2761 dbSNP
rs1280342375 2772 dbSNP
rs1318261182 2776 dbSNP
rs573858832 2780 dbSNP
rs1256036590 2788 dbSNP
rs1484178296 2796 dbSNP
rs1216792508 2797 dbSNP
rs1201018876 2815 dbSNP
rs1254857960 2823 dbSNP
rs943645675 2827 dbSNP
rs534848822 2833 dbSNP
rs912140375 2843 dbSNP
rs750597546 2861 dbSNP
rs956171550 2861 dbSNP
rs1031429403 2864 dbSNP
rs1468017137 2871 dbSNP
rs1304000423 2883 dbSNP
rs978890044 2886 dbSNP
rs6109642 2892 dbSNP
rs968431593 2898 dbSNP
rs1300223368 2904 dbSNP
rs1341397318 2905 dbSNP
rs6134735 2909 dbSNP
rs1218297601 2916 dbSNP
rs761469042 2922 dbSNP
rs1313800997 2927 dbSNP
rs1012576728 2928 dbSNP
rs1255350103 2931 dbSNP
rs895769299 2935 dbSNP
rs1226379197 2938 dbSNP
rs1263320158 2953 dbSNP
rs572575457 2953 dbSNP
rs1487743979 2957 dbSNP
rs1364041023 2964 dbSNP
rs1278748942 2980 dbSNP
rs1177354849 2984 dbSNP
rs1035602080 2986 dbSNP
rs1377580425 2986 dbSNP
rs1300083546 2987 dbSNP
rs1004051018 2988 dbSNP
rs886905685 2995 dbSNP
rs1304990125 2996 dbSNP
rs6109641 2999 dbSNP
rs1047819514 3001 dbSNP
rs776032411 3012 dbSNP
rs1296660006 3020 dbSNP
rs6109639 3027 dbSNP
rs1369383146 3035 dbSNP
rs1387154569 3045 dbSNP
rs1458621211 3051 dbSNP
rs1349490015 3052 dbSNP
rs1163167464 3058 dbSNP
rs1803586 3061 dbSNP
rs6109638 3063 dbSNP
rs899228494 3067 dbSNP
rs1039472485 3071 dbSNP
rs1062369 3074 dbSNP
rs943372503 3081 dbSNP
rs1489658274 3084 dbSNP
rs912151666 3086 dbSNP
rs1453063421 3089 dbSNP
rs112758107 3107 dbSNP
rs536131247 3114 dbSNP
rs1477092359 3115 dbSNP
rs1051933242 3123 dbSNP
rs1260455646 3124 dbSNP
rs112780650 3127 dbSNP
rs1157063901 3132 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 2280.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001199786 | 3UTR | UUUAUCUAUUAUAUAUUAAACAUUCUUGCUGCUGCGCUGCAAAGCCAUAGCAGAUUUGAGGCGCUGUUGAGGACUGAAUUACUCUCCAAGUUGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001199786 | 3UTR | UGGAUGAAAUUUUUAUCUAUUAUAUAUUAAACAUUCUUGCUGCUGCGCUGCAAAGCCAUAGCAGAUUUGAGGCGCUGUUGAGGACUGAAUUACUCUCCAAGUUGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001199786 | 3UTR | UUGGAUGAAAUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000400137.4 | 3UTR | AAAUUUUUAUCUAUUAUAUAUUAAACAUUCUUGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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