pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol CRNKL1   
Synonyms CLF, CRN, Clf1, HCRN, MSTP021, SYF3
Description crooked neck pre-mRNA splicing factor 1
Transcript NM_016652   
Expression
Putative miRNA Targets on CRNKL1
3'UTR of CRNKL1
(miRNA target sites are highlighted)
>CRNKL1|NM_016652|3'UTR
   1 TCTTTTTTTCATAGACAAATGTTTTGTTATTTTTATAAATTAATTGTTTGGAACTCTTGTGACTCCTGGAAGTTCTTATA
  81 TATTTCACCAGTAAGAAATTGATTGGTATCTTTGATGGCTACTTTTTAAGTTATTTTTTAAATGCTCTTGGGTTAGCTAG
 161 GGGTAGGGATTGCAAGTAAAGGACTTTTTTAACTGCTGGATTTGTTTTTCCAACTGAGTCCAAACTTTTCTAATGTCTGT
 241 CCACATCATGCATTAGGAAATGTAATTAAGGTAACATTCTACAGTTACTTTTCATGTCATACCCATAAAGATAGTTTATG
 321 CATTCATCTGAAATGTGTAACTTTTTCATGTCTTCAGAGTCACAGACTTGAGTTCATTTCCCAGCTCTGCCACTCATGAT
 401 TATATAACTTAATTTTCATTTTCCTCATTCACAAAATGGGCCAATAGTTTGACAGCTCATTTTGAAGATTACATTATAAA
 481 AGGAATATACCTGGTGGGTGCATAGTAAGTGCTCAGTAAATTGTTTGTTCTAAGCCACTTTTAAAAATGGTTTCATTCCT
 561 TGTAGAATTGAATGCGAGTGGATTAATAATTTACCTTACTTTCTTACTAGTGTCCAGTTATATTGTTTTTTAGAACAACA
 641 CTTGGAAAATAATTTGCAGTGATTATATTTCTGAACAAGGTTCAGAAAACATTGTTTACTAAGAATTTAGTCTAATAATT
 721 TCAGTTAGGCGCTCATCAGTTCTCCAGAGTGGTTGAGTTTGTAATACCTTGTTTAAAGAATAATGGCTTGTTCACGTGTG
 801 TGCTATGAAAAATGATGTCCCATGTTCACATAAATTTGGGAAATTCTGGACTAAGACTTAAGTCTCGTTAATCAAATCTC
 881 TTTATAGTTAGGCTTCTGTACATTATGTATCTCCAGTAGCAATGTTGCCATATTATTTATTTCCCAAACTTAGTGGACAA
 961 TGGAGTCATTTCTACCTAGAGTACCAGTAAACATCTCCCAGTGTGCTATAGTAGAAAATGTCTACTCCTCACTGCTGACA
1041 TGTTAAACTTACTCTTGGTTTAGAGCATGTGTAGAAACACCTAAGGTAGCTCTATGCTAAATAATGAAGAGTAGCACAAG
1121 AATGAATGTATTTGCTGATACGTTGCTCACATTCTCAAGCAAAAATTCAACTGCATTAACCGATCTGAGAGTTTTCCTTT
1201 AACCTGGACTGTGTTTCTCAAGCACATTTTTTCTTTGTTCACTGCCCAAGGACTAGAACTGTATTTTTAAGGTTGTTTTC
1281 CCCTAAAAGGACCTTTAGTAAGCAAATTTATTATTAAATGTGCACATCTTATTCACCCAAGGGAATAAAAGCTACTTCGT
1361 AATGTTGTTACTAAATTTTATCTTGAAAATAAATAACAGTGTTTGAGGACAGAAGAAACTAGGACTGTTGTTGAGATAAA
1441 ATCTGTTTTCAGCCTGACTGCTTTAGTCACTGGACGAGCATCAGCTACTGCGGTGTCAGATCACTTCTCGAGTAGAGGTC
1521 TGCCTAGTGAGTGAGCAGGAGAACATCATCTTAATAGCCTTTGGCTCACCCAGAGTCAGGGAGAGATGAAAATAATAGGT
1601 CAGAATGCAAGTGACTTAATCACAGTCTTCCTAGAATTATCTGTTTATGTTGCATGAATGCATAAGAAAAAAATTCTGTC
1681 ATGTTCCCAAGGTAGAATTGTAATAAGCATGTGCCAGTGTGAAAGCTGGAAGGAAAAAAGCTATTCTCTAACAGGAGAAC
1761 ATAAAGATTCATTTCTCTCCCACCCTCAACTCCACCAAAGTAAATCCTTTCGATAGTAAAAGTTTAATAATTTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuagUGUU-UACAGGAAUUAUc 5'
               | || ||  :||||||| 
Target 5' gcaggAGAACATCATCTTAATAg 3'
1535 - 1557 149.00 -11.50
2
miRNA  3' cuUAGUGUUUACAGGAAUUAuc 5'
            | ::|||:||  ||||||  
Target 5' agAATGCAAGTG-ACTTAATca 3'
1602 - 1622 139.00 -10.70
3
miRNA  3' cuuAGUGUUUACAGGAAU-UAUc 5'
             || :::| ||:|||| ||| 
Target 5' gacTCCTGGAAGTTCTTATATAt 3'
61 - 83 131.00 -5.99
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28192069 43 COSMIC
COSN31511279 65 COSMIC
COSN31579222 121 COSMIC
COSN29590382 126 COSMIC
COSN1867219 305 COSMIC
COSN22364741 320 COSMIC
COSN5966692 666 COSMIC
COSN2838418 714 COSMIC
COSN14562979 1431 COSMIC
COSN20116316 1588 COSMIC
COSN20116311 1641 COSMIC
COSN31961834 1740 COSMIC
COSN5966691 1789 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773846209 8 dbSNP
rs1361174051 10 dbSNP
rs536975424 11 dbSNP
rs1169694726 12 dbSNP
rs749567955 15 dbSNP
rs780470421 16 dbSNP
rs1199903420 18 dbSNP
rs1477699191 20 dbSNP
rs1334595150 26 dbSNP
rs753491016 26 dbSNP
rs770228658 30 dbSNP
rs960288927 31 dbSNP
rs765954327 46 dbSNP
rs746359428 47 dbSNP
rs112085981 50 dbSNP
rs1237128054 52 dbSNP
rs1262759047 56 dbSNP
rs976688517 59 dbSNP
rs1001789691 68 dbSNP
rs763809368 75 dbSNP
rs189229793 79 dbSNP
rs1249230398 84 dbSNP
rs184813090 84 dbSNP
rs1416838962 86 dbSNP
rs1183494182 87 dbSNP
rs1364077152 88 dbSNP
rs1469051294 91 dbSNP
rs372098197 99 dbSNP
rs1419989654 106 dbSNP
rs560421652 106 dbSNP
rs1052781795 107 dbSNP
rs560068573 109 dbSNP
rs1389813517 116 dbSNP
rs890796963 127 dbSNP
rs1025787542 130 dbSNP
rs1050132256 130 dbSNP
rs932573516 134 dbSNP
rs751630873 144 dbSNP
rs919768204 146 dbSNP
rs973853744 147 dbSNP
rs994339860 158 dbSNP
rs1484632563 166 dbSNP
rs942122523 172 dbSNP
rs1479366428 183 dbSNP
rs1197053744 185 dbSNP
rs907931602 190 dbSNP
rs1479926266 191 dbSNP
rs983491689 194 dbSNP
rs1265515800 195 dbSNP
rs79118662 198 dbSNP
rs1056217061 205 dbSNP
rs1480665072 211 dbSNP
rs746547738 213 dbSNP
rs371558462 219 dbSNP
rs1247215428 229 dbSNP
rs767863661 237 dbSNP
rs1045155921 245 dbSNP
rs1371354826 246 dbSNP
rs1404589437 251 dbSNP
rs1413541933 271 dbSNP
rs1281667549 276 dbSNP
rs192046680 277 dbSNP
rs1224576710 280 dbSNP
rs563156890 281 dbSNP
rs1306278447 282 dbSNP
rs1400081696 290 dbSNP
rs530098651 298 dbSNP
rs1052237905 300 dbSNP
rs935175595 304 dbSNP
rs922474608 312 dbSNP
rs976804326 313 dbSNP
rs1219763774 314 dbSNP
rs1270682297 315 dbSNP
rs1490448152 319 dbSNP
rs1185726121 325 dbSNP
rs1368874848 325 dbSNP
rs964119890 326 dbSNP
rs1417220673 327 dbSNP
rs150516071 330 dbSNP
rs561454983 337 dbSNP
rs1390836689 340 dbSNP
rs1265267212 348 dbSNP
rs1367702095 349 dbSNP
rs1194215027 351 dbSNP
rs1446536204 353 dbSNP
rs890817455 355 dbSNP
rs1259688397 356 dbSNP
rs1049377110 360 dbSNP
rs1216809997 360 dbSNP
rs1211912520 378 dbSNP
rs1247996338 393 dbSNP
rs1358103899 396 dbSNP
rs1488913926 404 dbSNP
rs565476218 405 dbSNP
rs1214757002 415 dbSNP
rs1265281132 415 dbSNP
rs771056477 439 dbSNP
rs1240164159 440 dbSNP
rs1486750998 445 dbSNP
rs1187000540 453 dbSNP
rs1242526489 459 dbSNP
rs1444069459 460 dbSNP
rs1161756763 469 dbSNP
rs1026323355 470 dbSNP
rs1406199610 475 dbSNP
rs1231856259 477 dbSNP
rs1320363967 479 dbSNP
rs1279419195 483 dbSNP
rs898374484 485 dbSNP
rs540512895 490 dbSNP
rs1315573494 493 dbSNP
rs12624987 494 dbSNP
rs1390986800 504 dbSNP
rs1356550423 511 dbSNP
rs187524609 516 dbSNP
rs1222823924 530 dbSNP
rs1281750236 548 dbSNP
rs1035883236 549 dbSNP
rs1324735653 554 dbSNP
rs1459683663 573 dbSNP
rs1216303810 574 dbSNP
rs535069614 575 dbSNP
rs904951924 576 dbSNP
rs938764728 580 dbSNP
rs1044714565 581 dbSNP
rs1245026554 583 dbSNP
rs76588215 588 dbSNP
rs766718060 595 dbSNP
rs771897489 599 dbSNP
rs1402745702 600 dbSNP
rs763364224 602 dbSNP
rs1405940998 606 dbSNP
rs556011951 606 dbSNP
rs183116705 609 dbSNP
rs1440920999 613 dbSNP
rs1277392634 614 dbSNP
rs1375086970 615 dbSNP
rs980100697 617 dbSNP
rs970716074 618 dbSNP
rs1252614237 619 dbSNP
rs935289580 621 dbSNP
rs1321223168 623 dbSNP
rs1205450472 625 dbSNP
rs867581774 630 dbSNP
rs1212011274 631 dbSNP
rs1021921643 632 dbSNP
rs1259082670 641 dbSNP
rs1471297162 643 dbSNP
rs1198615179 652 dbSNP
rs368952730 652 dbSNP
rs1429000004 663 dbSNP
rs1040885469 665 dbSNP
rs990400428 665 dbSNP
rs1179201244 680 dbSNP
rs956217902 680 dbSNP
rs34473409 684 dbSNP
rs1031832535 693 dbSNP
rs1234801452 698 dbSNP
rs942764523 702 dbSNP
rs1355874845 706 dbSNP
rs3186300 710 dbSNP
rs984103268 711 dbSNP
rs796447486 714 dbSNP
rs1438202349 715 dbSNP
rs1225178811 720 dbSNP
rs1275314522 723 dbSNP
rs1402260343 724 dbSNP
rs1331756803 728 dbSNP
rs1214019703 729 dbSNP
rs1338676324 729 dbSNP
rs952814489 730 dbSNP
rs778892600 731 dbSNP
rs1484105236 742 dbSNP
rs918632244 743 dbSNP
rs75503129 744 dbSNP
rs867360055 751 dbSNP
rs750722170 753 dbSNP
rs1202054951 767 dbSNP
rs533792996 782 dbSNP
rs566935125 783 dbSNP
rs548733406 784 dbSNP
rs1420993540 785 dbSNP
rs201793234 790 dbSNP
rs999060492 793 dbSNP
rs372848212 795 dbSNP
rs530078857 796 dbSNP
rs192741116 800 dbSNP
rs551246970 801 dbSNP
rs969127715 802 dbSNP
rs938781888 805 dbSNP
rs1023814578 812 dbSNP
rs928695094 813 dbSNP
rs1278970138 823 dbSNP
rs1231679391 824 dbSNP
rs1044797079 831 dbSNP
rs753432900 834 dbSNP
rs893461056 837 dbSNP
rs1378654369 840 dbSNP
rs914560765 846 dbSNP
rs1250505031 847 dbSNP
rs548267952 847 dbSNP
rs1449486691 855 dbSNP
rs990431532 858 dbSNP
rs1309453899 860 dbSNP
rs1382965954 862 dbSNP
rs1426184183 864 dbSNP
rs1030649641 866 dbSNP
rs1383925717 867 dbSNP
rs78877184 868 dbSNP
rs1380378149 872 dbSNP
rs956249083 902 dbSNP
rs1365856237 904 dbSNP
rs1435819545 908 dbSNP
rs999385814 911 dbSNP
rs924792486 912 dbSNP
rs1380739854 913 dbSNP
rs13044732 925 dbSNP
rs955308624 932 dbSNP
rs1350393669 933 dbSNP
rs1203774637 938 dbSNP
rs1270508173 942 dbSNP
rs761945075 942 dbSNP
rs373746422 946 dbSNP
rs996997634 949 dbSNP
rs1182387642 953 dbSNP
rs565488911 957 dbSNP
rs889659796 960 dbSNP
rs1425076922 961 dbSNP
rs1187806221 962 dbSNP
rs77985149 976 dbSNP
rs1004097668 978 dbSNP
rs1161107247 982 dbSNP
rs776101486 983 dbSNP
rs139689547 984 dbSNP
rs1469210781 986 dbSNP
rs1334659376 992 dbSNP
rs1403996875 994 dbSNP
rs1397920192 996 dbSNP
rs1226012502 1002 dbSNP
rs1313642438 1010 dbSNP
rs1335406212 1020 dbSNP
rs1056700742 1022 dbSNP
rs565376063 1024 dbSNP
rs931436659 1025 dbSNP
rs528716844 1027 dbSNP
rs1421815540 1036 dbSNP
rs1203551596 1040 dbSNP
rs1381166712 1054 dbSNP
rs1003341769 1057 dbSNP
rs1200546887 1060 dbSNP
rs918568623 1061 dbSNP
rs905025267 1064 dbSNP
rs187766794 1068 dbSNP
rs1044512649 1069 dbSNP
rs1480026735 1075 dbSNP
rs111720765 1080 dbSNP
rs1379313030 1091 dbSNP
rs1188913656 1098 dbSNP
rs928876951 1099 dbSNP
rs1303534258 1107 dbSNP
rs1054436501 1108 dbSNP
rs934903447 1111 dbSNP
rs1310128670 1112 dbSNP
rs980235067 1122 dbSNP
rs1208090061 1127 dbSNP
rs970625237 1129 dbSNP
rs1351478828 1131 dbSNP
rs1281866109 1133 dbSNP
rs1314464860 1137 dbSNP
rs752324164 1140 dbSNP
rs1233287596 1141 dbSNP
rs1250290279 1143 dbSNP
rs148010578 1170 dbSNP
rs957840824 1181 dbSNP
rs545677564 1182 dbSNP
rs555750318 1184 dbSNP
rs6136921 1185 dbSNP
rs1490108697 1186 dbSNP
rs1285698017 1187 dbSNP
rs11467884 1192 dbSNP
rs11470008 1192 dbSNP
rs1427134343 1197 dbSNP
rs921414779 1204 dbSNP
rs975217298 1211 dbSNP
rs1315427067 1219 dbSNP
rs571075400 1224 dbSNP
rs1169716182 1225 dbSNP
rs1372543134 1227 dbSNP
rs143527121 1227 dbSNP
rs1354728804 1233 dbSNP
rs1371411631 1236 dbSNP
rs552324975 1237 dbSNP
rs573590476 1237 dbSNP
rs1003793353 1241 dbSNP
rs1387834757 1250 dbSNP
rs1295585396 1251 dbSNP
rs951305482 1254 dbSNP
rs1310932858 1257 dbSNP
rs577063405 1259 dbSNP
rs759842161 1259 dbSNP
rs1401927930 1261 dbSNP
rs1361204807 1263 dbSNP
rs1317936404 1265 dbSNP
rs1358331680 1269 dbSNP
rs1219920219 1274 dbSNP
rs1399155496 1279 dbSNP
rs901062871 1279 dbSNP
rs1488706284 1280 dbSNP
rs6136920 1290 dbSNP
rs1416466940 1291 dbSNP
rs1164199136 1292 dbSNP
rs1447667986 1299 dbSNP
rs1190599033 1303 dbSNP
rs1390974655 1307 dbSNP
rs558607057 1308 dbSNP
rs1163006081 1313 dbSNP
rs1351982137 1317 dbSNP
rs1003854080 1321 dbSNP
rs1006847302 1322 dbSNP
rs1352780455 1329 dbSNP
rs1279876966 1332 dbSNP
rs905056845 1333 dbSNP
rs574547012 1340 dbSNP
rs79557068 1345 dbSNP
rs1243285597 1346 dbSNP
rs377622100 1358 dbSNP
rs1214816530 1359 dbSNP
rs536745251 1359 dbSNP
rs897260889 1362 dbSNP
rs1258818625 1367 dbSNP
rs1466223213 1370 dbSNP
rs934682560 1370 dbSNP
rs1444917517 1372 dbSNP
rs903180783 1373 dbSNP
rs1444126157 1378 dbSNP
rs1291830649 1383 dbSNP
rs1416249241 1384 dbSNP
rs777008740 1390 dbSNP
rs1333797152 1393 dbSNP
rs1291398713 1397 dbSNP
rs1445246709 1399 dbSNP
rs747814549 1399 dbSNP
rs1036996791 1401 dbSNP
rs769620077 1405 dbSNP
rs749149229 1406 dbSNP
rs114059992 1413 dbSNP
rs752054296 1414 dbSNP
rs1063065 1415 dbSNP
rs949023128 1418 dbSNP
rs975963078 1424 dbSNP
rs1208118194 1430 dbSNP
rs1428973491 1434 dbSNP
rs780089925 1434 dbSNP
rs1351824382 1436 dbSNP
rs1410177749 1439 dbSNP
rs914712596 1440 dbSNP
rs1324386227 1442 dbSNP
rs1429213401 1443 dbSNP
rs750205253 1445 dbSNP
rs1335653783 1449 dbSNP
rs941115179 1454 dbSNP
rs766838330 1457 dbSNP
rs1305838699 1461 dbSNP
rs532612958 1461 dbSNP
rs1228793779 1465 dbSNP
rs1282485816 1468 dbSNP
rs1342823742 1472 dbSNP
rs1173512032 1475 dbSNP
rs958004809 1476 dbSNP
rs16981448 1478 dbSNP
rs532430822 1479 dbSNP
rs189994615 1486 dbSNP
rs879904612 1491 dbSNP
rs1035087451 1492 dbSNP
rs781145888 1498 dbSNP
rs1183352434 1504 dbSNP
rs1365001470 1505 dbSNP
rs1268745635 1507 dbSNP
rs1474107548 1509 dbSNP
rs1425218418 1510 dbSNP
rs368168325 1512 dbSNP
rs1248098918 1516 dbSNP
rs965011422 1518 dbSNP
rs1019262413 1532 dbSNP
rs1372028460 1536 dbSNP
rs969688457 1538 dbSNP
rs1213886249 1542 dbSNP
rs1438488773 1543 dbSNP
rs1046341 1547 dbSNP
rs1467886470 1548 dbSNP
rs1345796013 1550 dbSNP
rs751896237 1551 dbSNP
rs1272664979 1556 dbSNP
rs1023471452 1570 dbSNP
rs1289587723 1571 dbSNP
rs1450284238 1577 dbSNP
rs1301424954 1579 dbSNP
rs1201638385 1582 dbSNP
rs1007204370 1584 dbSNP
rs75638907 1590 dbSNP
rs752738811 1593 dbSNP
rs953998181 1593 dbSNP
rs1027208519 1596 dbSNP
rs140085240 1596 dbSNP
rs893636636 1597 dbSNP
rs554484235 1598 dbSNP
rs1033134509 1602 dbSNP
rs186418351 1607 dbSNP
rs1229371002 1619 dbSNP
rs1308003993 1619 dbSNP
rs998921234 1622 dbSNP
rs773294852 1624 dbSNP
rs561149527 1638 dbSNP
rs903212691 1640 dbSNP
rs1051505142 1641 dbSNP
rs1291171499 1641 dbSNP
rs397725179 1642 dbSNP
rs1186391299 1643 dbSNP
rs1491585634 1643 dbSNP
rs386393496 1646 dbSNP
rs56296396 1646 dbSNP
rs146345717 1647 dbSNP
rs200155428 1647 dbSNP
rs900042196 1647 dbSNP
rs1455553720 1649 dbSNP
rs748784989 1650 dbSNP
rs1369763091 1651 dbSNP
rs897211825 1662 dbSNP
rs866061538 1663 dbSNP
rs1247378640 1666 dbSNP
rs769799812 1673 dbSNP
rs1285135405 1674 dbSNP
rs910048833 1678 dbSNP
rs1440412936 1681 dbSNP
rs541485982 1683 dbSNP
rs929688703 1686 dbSNP
rs1199396703 1690 dbSNP
rs1333780114 1691 dbSNP
rs529732249 1695 dbSNP
rs907186163 1698 dbSNP
rs1168870490 1700 dbSNP
rs1407744046 1701 dbSNP
rs1410912105 1705 dbSNP
rs1426601983 1707 dbSNP
rs769198643 1707 dbSNP
rs1193930755 1710 dbSNP
rs1457800149 1715 dbSNP
rs1400223452 1717 dbSNP
rs1397976454 1719 dbSNP
rs1335187407 1720 dbSNP
rs948957145 1728 dbSNP
rs914848149 1729 dbSNP
rs1054993095 1730 dbSNP
rs80253353 1732 dbSNP
rs769789926 1740 dbSNP
rs749798812 1752 dbSNP
rs745856469 1754 dbSNP
rs967841464 1758 dbSNP
rs1200671164 1759 dbSNP
rs1250685681 1761 dbSNP
rs1029666360 1763 dbSNP
rs1481917177 1763 dbSNP
rs1491418503 1765 dbSNP
rs534673943 1766 dbSNP
rs899821890 1766 dbSNP
rs1375995946 1769 dbSNP
rs1314064983 1771 dbSNP
rs1005747707 1780 dbSNP
rs1174437338 1780 dbSNP
rs888630570 1781 dbSNP
rs1047197368 1787 dbSNP
rs576798726 1787 dbSNP
rs139373723 1788 dbSNP
rs375501594 1788 dbSNP
rs1299899057 1790 dbSNP
rs1332305036 1791 dbSNP
rs1233920440 1795 dbSNP
rs1273380383 1800 dbSNP
rs1339664099 1805 dbSNP
rs1206912452 1807 dbSNP
rs565438448 1807 dbSNP
rs965126355 1808 dbSNP
rs927670745 1811 dbSNP
rs912182218 1812 dbSNP
rs947751401 1812 dbSNP
rs1392348050 1814 dbSNP
rs757155171 1815 dbSNP
rs1428035693 1822 dbSNP
rs1372993551 1823 dbSNP
rs1355472335 1825 dbSNP
rs916232746 1825 dbSNP
rs989424809 1826 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51340.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000377327.4 | 3UTR | AUUAAUAAUUUACCUUACUUUCUUACUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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