Gene Symbol |
ECHDC1
|
Synonyms |
HEL-S-76, MMCD, dJ351K20.2 |
Description |
ethylmalonyl-CoA decarboxylase 1 |
Transcript |
NM_001105545
|
Other Transcripts |
NM_001105544
,
NM_001002030
,
NM_001139510
,
NM_018479
|
Expression |
|
Putative miRNA Targets on ECHDC1 |
|
3'UTR of ECHDC1 (miRNA target sites are highlighted) |
>ECHDC1|NM_001105545|3'UTR
1 TTTCAGGTTAATGACTCCAGAGAGTAAGATCAGATTCGTCCACAAAGAGATGGGCATAATACCAAGCTGGGGTGGCACCA
81 CCCGGCTAGTTGAAATAATCGGAAGTAGACAAGCTCTCAAAGTGTTGAGTGGGGCCCTTAAACTGGATTCAAAAAATGCT
161 CTAAACATAGGAATGGTTGAAGAGGTCTTGCAGTCTTCAGATGAAACTAAATCTCTAGAAGAGGCACAAGAATGGCTAAA
241 GCAATTCATCCAAGGGCCACCGGAAGTAATTAGAGCTTTGAAAAAATCTGTTTGTTCAGGCAGAGAGCTATATTTGGAGG
321 AAGCATTACAGAACGAAAGAGATCTTTTAGGAACAGTTTGGGGTGGGCCTGCAAATTTAGAGGCTATTGCTAAGAAAGGA
401 AAATTTAATAAATAATTGGTTTTTCGTGTGGATGTACTCCAAGTAAAGCTCCAGTGACTAATATGTATAAATGTTAAATG
481 ATATTAAATATGAACATCAGAATTACTTTGAAGGCTACTATTAATATGCAGACTTACTTTTAATCATTTGAATATCTGAA
561 CTCATTTACCTCATTTCTTGCCAATTACTCACTTGG GTATTTACTGCGTAATCTGGAACATTTAGCTAAAATATACACTT
641 TTGGCTTAAAAATTATTGCTGTCAATTCCAATAATAATTCTTAGCTTATAACCAAAGAGCAGTGTTTAAAAGGAGAGCTT
721 CTATACAAAACCTATTCCTGGCGTTACTTTTCATACAATTTTTGTTCTGTTTTACCTGGAAATAATTTACCAAAATAACT
801 GAGTGTTGCTGCTAAAGAACAAAAGTGGGGAGGTATCAGGGAACAAGAAAACAAGAAAGGGTATGATCAATCATTTTCTT
881 CTGCTCCAAACAGCTGGAGTAAAATTCATGGGAAATGGCCCTTCATTTAAAAAAAGATGTACCTCACTACCCACTACAAA
961 TTTGGAACTTTGTTCTTTTCAATAATTAGTTTTCTATTGTAAATTACCTACTAAACAGTGGTAGCCATGACATGGAAAGT
1041 CAACTGATTCTACAATTGGACATTCATTTGTGTGCCCTGGAATTTCCAACTAGTAATAAACAACTACTGTTGATGTAGTT
1121 TTAAACCACTTGAAGGGACTCATGAAGCATCCTGCAACATAAATTTGCATTTTTACATCAGATTTCTTTTTTTTCCTGAA
1201 AAACAACTAACCTTCTAACAACTATCTTTCAAAAGTAAATGTAATAAAAATGCACAACATAAAATGTTTATGATCCCAGC
1281 AATACACTTTTTAAAAAATGTGAAAGTCAAAGAATTAAGTTCTAGTTCTGACTCATCACAAGAGGTCAAAAGTATTTGCT
1361 ACTGTAACATTCAATTCACATTTGAGAATCATGGTAAAAATAACTTGCATTTGCCTTACCATCATGATCCTACTGTTGAG
1441 TTAGGAAAATATGGTTAGACAGACTCACATTACTTTTTTTCAGAGGTAAACTCTAGATTACTGTGTCAACCCAATACTAT
1521 TTGGCCATAGATGTAAAAACTACCAAATAAAAGTGGATTTTGTGGTCTACAAAAAAAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' uugAUAUGUUGGAG--GAUGGAGu 5'
||| ::| ||| :||||||
Target 5' gaaTATCTGAACTCATTTACCTCa 3'
|
550 - 573
|
145.00 |
-13.20 |
2
|
miRNA 3' uugaUAUGUUGGAG-GAUGGagu 5'
||:: ||||| |||||
Target 5' aaagATGT-ACCTCACTACCcac 3'
|
933 - 954
|
121.00 |
-16.20 |
3
|
miRNA 3' uuGAUAUGUUGGAGGAUGGAGu 5'
||| |||| |||:||:
Target 5' ttCTA-ACAA----CTATCTTt 3'
|
1213 - 1229
|
121.00 |
-8.40 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|