pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MYC   
Synonyms MRTL, MYCC, bHLHe39, c-Myc
Description MYC proto-oncogene, bHLH transcription factor
Transcript NM_002467   
Expression
Putative miRNA Targets on MYC
3'UTR of MYC
(miRNA target sites are highlighted)
>MYC|NM_002467|3'UTR
   1 GGAAAAGTAAGGAAAACGATTCCTTCTAACAGAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATGCATGATCAA
  81 ATGCAACCTCACAACCTTGGCTGAGTCTTGAGACTGAAAGATTTAGCCATAATGTAAACTGCCTCAAATTGGACTTTGGG
 161 CATAAAAGAACTTTTTTATGCTTACCATCTTTTTTTTTTCTTTAACAGATTTGTATTTAAGAATTGTTTTTAAAAAATTT
 241 TAAGATTTACACAATGTTTCTCTGTAAATATTGCCATTAAATGTAAATAACTTTAATAAAACGTTTATAGCAGTTACACA
 321 GAATTTCAATCCTAGTATATAGTACCTAGTATTATAGGTACTATAAACCCTAATTTTTTTTATTTAAGTACATTTTGCTT
 401 TTTAAAGTTGATTTTTTTCTATTGTTTTTAGAAAAAATAAAATAACTGGCAAATATATCATTGAGCCAAATCTTAAAAAA
 481 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaaccCA-AAAUUCU---CAAGAAau 5'
               || |||||||   |||:||  
Target 5' gatttGTATTTAAGAATTGTTTTTaa 3'
208 - 233 129.00 -6.10
2
miRNA  3' uaACCC-AAAAUUC-UCAAGAAAu 5'
            ||||  |  ||| | ||:||| 
Target 5' ttTGGGCATAAAAGAACTTTTTTa 3'
155 - 178 112.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14324859 18 COSMIC
COSN31491901 25 COSMIC
COSN31573866 36 COSMIC
COSN30461269 41 COSMIC
COSN15315257 51 COSMIC
COSN30479950 53 COSMIC
COSN30646181 68 COSMIC
COSN9597076 69 COSMIC
COSN30496495 79 COSMIC
COSN31530358 79 COSMIC
COSN5674198 107 COSMIC
COSN30452818 115 COSMIC
COSN9255250 126 COSMIC
COSN9597077 129 COSMIC
COSN9597078 133 COSMIC
COSN18733201 179 COSMIC
COSN15664850 200 COSMIC
COSN31602668 230 COSMIC
COSN31772579 238 COSMIC
COSN30175029 293 COSMIC
COSN1359443 320 COSMIC
COSN14898034 357 COSMIC
COSN28763683 387 COSMIC
COSN31772580 450 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1362443865 2 dbSNP
rs779751378 6 dbSNP
rs200447778 10 dbSNP
rs1331275161 11 dbSNP
rs1452207357 13 dbSNP
rs768701719 16 dbSNP
rs373561075 18 dbSNP
rs367692900 19 dbSNP
rs1438303994 21 dbSNP
rs1281624150 29 dbSNP
rs931069152 30 dbSNP
rs774015583 31 dbSNP
rs747913772 33 dbSNP
rs181048497 41 dbSNP
rs1353515183 44 dbSNP
rs35524866 45 dbSNP
rs546100354 45 dbSNP
rs949093702 46 dbSNP
rs200570465 47 dbSNP
rs907487353 49 dbSNP
rs759911200 50 dbSNP
rs2070583 51 dbSNP
rs576408843 52 dbSNP
rs1245476064 53 dbSNP
rs1003352425 54 dbSNP
rs1031845666 55 dbSNP
rs893273346 56 dbSNP
rs1190366265 57 dbSNP
rs1388324174 58 dbSNP
rs1474451314 59 dbSNP
rs760393718 69 dbSNP
rs1391577072 91 dbSNP
rs149534345 95 dbSNP
rs1028803920 97 dbSNP
rs1363132641 106 dbSNP
rs544605712 107 dbSNP
rs14607 110 dbSNP
rs1006494666 111 dbSNP
rs1436355649 115 dbSNP
rs185650723 128 dbSNP
rs4645970 130 dbSNP
rs1427861623 133 dbSNP
rs987235223 139 dbSNP
rs1226030225 143 dbSNP
rs542316783 144 dbSNP
rs1019568567 160 dbSNP
rs1192842372 163 dbSNP
rs961317581 169 dbSNP
rs1266830942 173 dbSNP
rs975108386 179 dbSNP
rs1483468160 183 dbSNP
rs1028404221 186 dbSNP
rs1307281064 190 dbSNP
rs371119850 190 dbSNP
rs986942649 190 dbSNP
rs924487690 201 dbSNP
rs560444505 205 dbSNP
rs1301946221 231 dbSNP
rs1371960357 232 dbSNP
rs934456533 232 dbSNP
rs990034221 233 dbSNP
rs753508752 237 dbSNP
rs1461351266 238 dbSNP
rs972586894 239 dbSNP
rs919772233 252 dbSNP
rs143895359 254 dbSNP
rs1210404336 255 dbSNP
rs931114049 256 dbSNP
rs990648738 257 dbSNP
rs1246093632 259 dbSNP
rs1472952830 266 dbSNP
rs1254330747 277 dbSNP
rs1427804412 290 dbSNP
rs1188205475 291 dbSNP
rs907186988 303 dbSNP
rs552525496 304 dbSNP
rs1321949168 313 dbSNP
rs564425416 321 dbSNP
rs949155742 322 dbSNP
rs190322311 338 dbSNP
rs778430083 339 dbSNP
rs923561358 344 dbSNP
rs1304464370 360 dbSNP
rs934906579 361 dbSNP
rs1053336677 362 dbSNP
rs752036530 364 dbSNP
rs1163039403 368 dbSNP
rs1468183786 370 dbSNP
rs1016431498 374 dbSNP
rs886607980 374 dbSNP
rs893327404 374 dbSNP
rs1179956021 387 dbSNP
rs900793735 387 dbSNP
rs550160158 392 dbSNP
rs1049908801 398 dbSNP
rs1185749197 399 dbSNP
rs889904780 399 dbSNP
rs568518631 408 dbSNP
rs1330660879 412 dbSNP
rs562624244 412 dbSNP
rs955185283 412 dbSNP
rs1258379502 414 dbSNP
rs535929859 420 dbSNP
rs1019578422 421 dbSNP
rs529405092 426 dbSNP
rs1031804737 432 dbSNP
rs1314420816 432 dbSNP
rs1382114180 432 dbSNP
rs1381732668 434 dbSNP
rs755565767 444 dbSNP
rs1341676481 448 dbSNP
rs1242050026 450 dbSNP
rs1156821729 451 dbSNP
rs994062577 451 dbSNP
rs955782808 458 dbSNP
rs989981761 460 dbSNP
rs1359749415 461 dbSNP
rs914389805 462 dbSNP
rs1242892491 470 dbSNP
rs1189793239 486 dbSNP
rs781405135 487 dbSNP
rs1026880159 491 dbSNP
rs1229881592 496 dbSNP
rs548284320 497 dbSNP
rs1243296011 503 dbSNP
rs1266883844 503 dbSNP
rs991092766 507 dbSNP
rs916415070 508 dbSNP
rs1258251930 510 dbSNP
rs1437194341 511 dbSNP
rs928673770 525 dbSNP
rs1381787358 526 dbSNP
rs970886207 537 dbSNP
rs566471603 543 dbSNP
rs923613724 544 dbSNP
rs148188362 546 dbSNP
rs1037895418 547 dbSNP
rs1371921454 559 dbSNP
rs34682115 560 dbSNP
rs1473013197 565 dbSNP
rs1193066431 573 dbSNP
rs541510321 575 dbSNP
rs1270355743 580 dbSNP
rs1362352940 580 dbSNP
rs1219836396 582 dbSNP
rs1490065537 588 dbSNP
rs1275106389 590 dbSNP
rs914837117 591 dbSNP
rs996455670 593 dbSNP
rs1030961340 596 dbSNP
rs1269564322 605 dbSNP
rs890805369 608 dbSNP
rs1331774956 609 dbSNP
rs1173655072 616 dbSNP
rs1304985662 625 dbSNP
rs947656300 634 dbSNP
rs558826267 637 dbSNP
rs1365254438 648 dbSNP
rs889924017 650 dbSNP
rs778102478 654 dbSNP
rs376385237 658 dbSNP
rs1394760437 660 dbSNP
rs955814959 661 dbSNP
rs1011269784 662 dbSNP
rs1021428607 663 dbSNP
rs969843417 665 dbSNP
rs749564337 672 dbSNP
rs560392947 678 dbSNP
rs928506151 679 dbSNP
rs1411208748 682 dbSNP
rs1435911709 685 dbSNP
rs1286086243 687 dbSNP
rs1041083667 693 dbSNP
rs141503199 702 dbSNP
rs983896024 703 dbSNP
rs907855814 711 dbSNP
rs1221837881 717 dbSNP
rs994155868 719 dbSNP
rs1280413062 723 dbSNP
rs1037759950 730 dbSNP
rs1210102346 731 dbSNP
rs1328524787 733 dbSNP
rs1026932841 735 dbSNP
rs181649764 742 dbSNP
rs1409016604 752 dbSNP
rs1174895022 753 dbSNP
rs186781003 754 dbSNP
rs1412032870 755 dbSNP
rs574790380 757 dbSNP
rs1483423768 758 dbSNP
rs932109332 768 dbSNP
rs1012126869 779 dbSNP
rs774632440 781 dbSNP
rs1051930848 789 dbSNP
rs1462486047 790 dbSNP
rs1023896394 795 dbSNP
rs890742830 798 dbSNP
rs1322949403 799 dbSNP
rs572241574 807 dbSNP
rs1284998838 820 dbSNP
rs541930040 821 dbSNP
rs1225690294 823 dbSNP
rs999765993 827 dbSNP
rs970557438 836 dbSNP
rs1248752892 840 dbSNP
rs981876945 842 dbSNP
rs923710357 843 dbSNP
rs1453917788 844 dbSNP
rs192089690 849 dbSNP
rs1335376628 852 dbSNP
rs989180728 855 dbSNP
rs1052750043 862 dbSNP
rs1160564541 871 dbSNP
rs1398605629 876 dbSNP
rs1200087225 880 dbSNP
rs1163449352 885 dbSNP
rs906824192 886 dbSNP
rs369999379 888 dbSNP
rs1182946577 889 dbSNP
rs1021292790 893 dbSNP
rs1173571178 894 dbSNP
rs1242791369 896 dbSNP
rs1218110368 898 dbSNP
rs554217507 900 dbSNP
rs1001806624 901 dbSNP
rs1431165657 905 dbSNP
rs1296091102 909 dbSNP
rs1313317196 914 dbSNP
rs183850214 924 dbSNP
rs944231870 925 dbSNP
rs1303073506 927 dbSNP
rs983373244 928 dbSNP
rs1368554361 929 dbSNP
rs1303407544 931 dbSNP
rs545977969 938 dbSNP
rs1383161009 944 dbSNP
rs4645971 949 dbSNP
rs775305295 950 dbSNP
rs1421646129 957 dbSNP
rs1184673670 959 dbSNP
rs1484961887 960 dbSNP
rs1241542155 962 dbSNP
rs963350284 963 dbSNP
rs186425113 967 dbSNP
rs543718581 972 dbSNP
rs1245769786 974 dbSNP
rs1207461493 999 dbSNP
rs1249803703 1001 dbSNP
rs1213278724 1003 dbSNP
rs932082900 1005 dbSNP
rs562110890 1011 dbSNP
rs888419381 1012 dbSNP
rs1210697326 1026 dbSNP
rs1269835976 1028 dbSNP
rs1052388785 1029 dbSNP
rs529667999 1031 dbSNP
rs1391398654 1033 dbSNP
rs1450761255 1035 dbSNP
rs1356038076 1038 dbSNP
rs1168263489 1045 dbSNP
rs1427808502 1046 dbSNP
rs544395121 1052 dbSNP
rs139159192 1053 dbSNP
rs765476985 1058 dbSNP
rs1222000513 1065 dbSNP
rs906426058 1065 dbSNP
rs1003407494 1070 dbSNP
rs566549822 1075 dbSNP
rs527438788 1076 dbSNP
rs1307368804 1084 dbSNP
rs1298233794 1088 dbSNP
rs143798928 1096 dbSNP
rs764712948 1098 dbSNP
rs773551317 1104 dbSNP
rs1212759760 1107 dbSNP
rs4645972 1108 dbSNP
rs189649721 1109 dbSNP
rs1391560030 1122 dbSNP
rs986180555 1124 dbSNP
rs1296167448 1130 dbSNP
rs1461428658 1137 dbSNP
rs146363336 1144 dbSNP
rs1406808798 1147 dbSNP
rs1245727201 1156 dbSNP
rs911505936 1162 dbSNP
rs1467414589 1167 dbSNP
rs1198467607 1178 dbSNP
rs944284119 1185 dbSNP
rs973440966 1190 dbSNP
rs1175907738 1192 dbSNP
rs116768771 1193 dbSNP
rs953617444 1195 dbSNP
rs1320830991 1199 dbSNP
rs182295576 1209 dbSNP
rs912067388 1221 dbSNP
rs930070349 1223 dbSNP
rs1418082464 1224 dbSNP
rs1048444140 1226 dbSNP
rs186907577 1229 dbSNP
rs915529914 1232 dbSNP
rs1166451335 1241 dbSNP
rs1450311714 1245 dbSNP
rs768009219 1248 dbSNP
rs878955999 1254 dbSNP
rs572499713 1256 dbSNP
rs71520682 1287 dbSNP
rs1460697118 1288 dbSNP
rs906483805 1292 dbSNP
rs1042729184 1308 dbSNP
rs1003460090 1312 dbSNP
rs905515204 1317 dbSNP
rs557892493 1331 dbSNP
rs549762957 1348 dbSNP
rs1390605046 1349 dbSNP
rs1428475908 1350 dbSNP
rs1439524655 1352 dbSNP
rs892272524 1354 dbSNP
rs1185999262 1356 dbSNP
rs4645973 1360 dbSNP
rs778333249 1362 dbSNP
rs1258625748 1364 dbSNP
rs370221716 1364 dbSNP
rs1022023630 1365 dbSNP
rs1359932909 1367 dbSNP
rs1316814165 1375 dbSNP
rs953234060 1376 dbSNP
rs1382018014 1383 dbSNP
rs1295318461 1384 dbSNP
rs749509425 1396 dbSNP
rs985847052 1405 dbSNP
rs757623398 1413 dbSNP
rs139430896 1417 dbSNP
rs562389011 1418 dbSNP
rs529598316 1420 dbSNP
rs1214201921 1421 dbSNP
rs745907253 1424 dbSNP
rs1385900463 1426 dbSNP
rs541802702 1427 dbSNP
rs559893073 1428 dbSNP
rs1029419944 1433 dbSNP
rs953379919 1437 dbSNP
rs984676885 1443 dbSNP
rs909996855 1448 dbSNP
rs183498027 1450 dbSNP
rs1490395875 1451 dbSNP
rs1045111964 1460 dbSNP
rs375266627 1467 dbSNP
rs927911672 1474 dbSNP
rs939259613 1475 dbSNP
rs1052325211 1479 dbSNP
rs1229458144 1484 dbSNP
rs4645974 1486 dbSNP
rs981019285 1493 dbSNP
rs926970808 1498 dbSNP
rs1413833784 1508 dbSNP
rs1398799140 1513 dbSNP
rs1158284340 1514 dbSNP
rs1010765105 1519 dbSNP
rs1423170080 1520 dbSNP
rs1448821393 1520 dbSNP
rs936984498 1523 dbSNP
rs1390434454 1524 dbSNP
rs1314776240 1526 dbSNP
rs565975495 1531 dbSNP
rs1476638471 1535 dbSNP
rs768048008 1541 dbSNP
rs1192381206 1548 dbSNP
rs1480475870 1555 dbSNP
rs895605998 1556 dbSNP
rs1196809999 1557 dbSNP
rs940402694 1560 dbSNP
rs1273394514 1564 dbSNP
rs1353674635 1569 dbSNP
rs1337302482 1573 dbSNP
rs1257331219 1588 dbSNP
rs570631438 1590 dbSNP
rs370450661 1602 dbSNP
rs1289234004 1614 dbSNP
rs1043940792 1616 dbSNP
rs1346192556 1624 dbSNP
rs370934681 1626 dbSNP
rs1403280540 1635 dbSNP
rs374076133 1638 dbSNP
rs1007679957 1639 dbSNP
rs1411991446 1642 dbSNP
rs1395054662 1643 dbSNP
rs898968610 1645 dbSNP
rs994773032 1653 dbSNP
rs1050320374 1656 dbSNP
rs1196878432 1657 dbSNP
rs1313345023 1659 dbSNP
rs4645975 1668 dbSNP
rs576210279 1678 dbSNP
rs1435856709 1682 dbSNP
rs965655026 1684 dbSNP
rs998410064 1688 dbSNP
rs1025875179 1696 dbSNP
rs1485068519 1703 dbSNP
rs775454005 1707 dbSNP
rs1182440846 1708 dbSNP
rs956812868 1712 dbSNP
rs1468381800 1720 dbSNP
rs1324394335 1722 dbSNP
rs1265014829 1726 dbSNP
rs1176456458 1741 dbSNP
rs951619162 1749 dbSNP
rs1425637769 1753 dbSNP
rs1344654504 1757 dbSNP
rs1009595034 1764 dbSNP
rs4645976 1765 dbSNP
rs1416062962 1770 dbSNP
rs1375124491 1771 dbSNP
rs1171686446 1786 dbSNP
rs746955010 1796 dbSNP
rs1022433552 1801 dbSNP
rs188398428 1802 dbSNP
rs1407659732 1805 dbSNP
rs910038577 1814 dbSNP
rs1173555274 1817 dbSNP
rs1413392428 1819 dbSNP
rs1408344995 1822 dbSNP
rs1373648518 1836 dbSNP
rs1159906509 1840 dbSNP
rs1468453235 1846 dbSNP
rs1379401057 1848 dbSNP
rs1184165028 1851 dbSNP
rs1434245624 1858 dbSNP
rs968164535 1862 dbSNP
rs1208191763 1868 dbSNP
rs981434654 1869 dbSNP
rs193204061 1872 dbSNP
rs981232062 1875 dbSNP
rs1225637793 1877 dbSNP
rs927966274 1880 dbSNP
rs62515808 1884 dbSNP
rs756756340 1889 dbSNP
rs1247360445 1893 dbSNP
rs77023277 1896 dbSNP
rs1368758532 1897 dbSNP
rs565952481 1898 dbSNP
rs1043567498 1899 dbSNP
rs888911114 1906 dbSNP
rs1007321773 1907 dbSNP
rs920426524 1914 dbSNP
rs1398551203 1916 dbSNP
rs1040076536 1921 dbSNP
rs901581696 1929 dbSNP
rs930426921 1935 dbSNP
rs539515638 1936 dbSNP
rs993152114 1939 dbSNP
rs557853775 1945 dbSNP
rs1472524506 1953 dbSNP
rs1242737990 1958 dbSNP
rs1218223151 1960 dbSNP
rs1487396802 1963 dbSNP
rs1285560206 1968 dbSNP
rs1274654133 1974 dbSNP
rs764801483 1979 dbSNP
rs1361995158 1984 dbSNP
rs889080895 1989 dbSNP
rs1203420196 1994 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4609.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000377970.2 | 3UTR | CUUACCAUCUUUUUUUUUUCUUUAACAGAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000377970.2 | 3UTR | CUUACCAUCUUUUUUUUUUCUUUAACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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