pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol FAM229B   
Synonyms C6orf225
Description family with sequence similarity 229 member B
Transcript NM_001033564   
Expression
Putative miRNA Targets on FAM229B
3'UTR of FAM229B
(miRNA target sites are highlighted)
>FAM229B|NM_001033564|3'UTR
   1 CACCATTAAGTCTTTTGTCAAGGTCTGACTAGGTCAAGGGTAATGGACCAGTATCATCTGGTGATCTGGTAAACAAATAA
  81 AAGTGGTGGCACCTTTAGATGATGACAACAGTTGAGCTCTTTACTTTTAGTAAGACCGACAGAAATGTAGTCAGTAAAGC
 161 ACATGTAGTGATAGGCTATCAGTTATGTCTGATACATAAGACAGAATAATATTTCACAATTAGAAAGTACCTTAGAGATC
 241 ATCTTGCTCACAGTAGATCATTAATATCAATAATTAAAGATGAAGCTTAATCCACCATGGTCATCAGTCAGGTGGGGCTT
 321 ATTCTAAATGCTTAATGTGTCTTAAGCTCATTTCCTTGTTCATATTTGGGTTGCTACTTGGCTAAATCCTTTCACCTTAG
 401 TACCCTAAGCCAGTTTCCTGGCTTGATACTATTTGATAATGCTCTGCTCAGGAATGATTATATTGGGTGAGAAATGGAGC
 481 CCTGGGGTTGTGTGTTTTGGAACAGTATTCAAGATCAAAGAAAGTTCTTAGTCCATGGTTAATCTGCAAGGCATTTAAGC
 561 CACTTCCATAGAGGAGCCCAGATTGTTGGTTAAATATATTGATAATGAAGTCAAAGCTGTGGTTCCAACCCCGATTTTTC
 641 CAAGAAAAATGACGTCTGGTTATCACTTTGTACACGAAGTGCTAACCAGGTATCTTGATAAATTGTTTACAGTAGGTATT
 721 GAGAAACCTCATGTGGATTTTTTAATTTGGTTAGATGTGGGATCACTTTTGAGGATGAGGCCAGCTCTCTATGTTCTCTT
 801 TTTCTTCTTGCAGTAGTCCCCAGAAACTCAGTCTGCTTTCCTTTTCTCTCGATGGCTGTCAGCACCCATCTAATGAAATT
 881 GTCTTCTCCAAAAGACTGACTTTAGGATCAGATACAATTTTCACCAGTGTTTTTTGTCTACCTTGCTGCTTCTGAAAATA
 961 TACATATAAGCCTTTTAAAATGAAAAGTTTATTAACTTATAATTAAATAGACGTAGATGCATATGTGTTGCATTAGGTGA
1041 AAAGAAAAACTGCCAGGGAGTTATAAGAGGAAAAACTCTCAGAGCTCACACTGAGCTGGGAGAAGTTTGAATGCCAACCA
1121 GTTAAAGTGGAAAGATCTTGAACATGTGGGGCATTGAGTAGAGACTCAGAAAGGTTGTACTTTCATAAGAGATCCAAACT
1201 GGAGCTAGACTAAAGGCTAATGTATACCAATTTTAAGAAAGCTTAAAAATAAGCCTTGAGAGACTCAAGATGATCTCTAA
1281 GTAACCTCATTTTATCTGCCAAATAAAAATAGAACATTCCTTAAAGGAAGAAAACAAAATCGAGGCAGGAAATTGCCTGA
1361 GGCTGGAGAAAAAATGACAGGAAGGAGAAAGGAGTGATGAAAAATTCCTCAGAGGGCTGGGCTTGGTGGCTCATGCCTGT
1441 AATCCTGGCACTTTGGGAGGCCGAAGTGGATGGATTATCTGAGGTCAGGCATTCGAAGCCAGCCTGGCCAACATGGTGAA
1521 ACCCCGACTCTACTAAAAATACAAAAATTAGTCGGGTATGATGGGCAGGTGCCTGTAATTCCAGCTACTTGGGAGGCTGA
1601 GGCAGGAAAATAGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCATCACTGTGCTCCAGCCTAGGCAACA
1681 GAGTGAGACTTTGTCTCAAAAAAAAAGAAAAACAAAGAAAAATTCCTCAGAGCTCATACAAGGCTGGGTAGAATATGTGT
1761 TTCAACAATAGTGGATCTTTTAATATAGTACATGGATCATTGAGTAGAGTCTTCAGCAAAATATTGGCAAAGTAGGGTTA
1841 GGGTTAGGTTAGGGAGATGGGAATAGACTGAAGACTACTCTGGACTTGCCCTAACAGAGTTTAAGAGCAACATTTGAAAG
1921 GATCAAACTGATTTCAAGTAACTTGAGTGCATCCAAGGGGAGAAAACCCATCAAAATAAAAATAAAAACTACAATAAAAT
2001 CCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acucuGUCCAAGUACGACGAUa 5'
               ||  ||:: |:||||| 
Target 5' ttgttCATATTTGGGTTGCTAc 3'
356 - 377 137.00 -9.30
2
miRNA  3' acucuguccaaGUACGACGAua 5'
                     | |||||||  
Target 5' tttttgtctacCTTGCTGCTtc 3'
931 - 952 127.00 -8.40
3
miRNA  3' acUCUGUCCAAGUACGACGaua 5'
            |||::  | ::||:|||   
Target 5' gtAGATGCATATGTGTTGCatt 3'
1013 - 1034 104.00 -6.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5357284 1 COSMIC
COSN27677683 4 COSMIC
COSN30491874 5 COSMIC
COSN30480842 13 COSMIC
COSN30507336 17 COSMIC
COSN23627575 20 COSMIC
COSN30125491 26 COSMIC
COSN30502205 29 COSMIC
COSN31509173 54 COSMIC
COSN31479653 64 COSMIC
COSN30140814 102 COSMIC
COSN30105973 109 COSMIC
COSN30482427 120 COSMIC
COSN20335947 165 COSMIC
COSN30201018 247 COSMIC
COSN15662534 668 COSMIC
COSN7594073 762 COSMIC
COSN28429446 937 COSMIC
COSN24962766 1014 COSMIC
COSN15660628 1141 COSMIC
COSN24602246 1477 COSMIC
COSN17650192 1820 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781812206 2 dbSNP
rs1311236991 13 dbSNP
rs1393700099 13 dbSNP
rs1397266039 19 dbSNP
rs1330848205 24 dbSNP
rs782440866 28 dbSNP
rs183512768 38 dbSNP
rs931546665 40 dbSNP
rs782252871 41 dbSNP
rs782488915 43 dbSNP
rs782683053 45 dbSNP
rs782281193 46 dbSNP
rs782186129 53 dbSNP
rs1367725061 57 dbSNP
rs887101184 60 dbSNP
rs938624177 64 dbSNP
rs1057244176 67 dbSNP
rs1185288687 71 dbSNP
rs894522219 72 dbSNP
rs782771132 80 dbSNP
rs1250597628 84 dbSNP
rs1197471147 87 dbSNP
rs1456124824 90 dbSNP
rs3177143 92 dbSNP
rs1045282900 100 dbSNP
rs1214654066 103 dbSNP
rs587773083 110 dbSNP
rs77668306 115 dbSNP
rs781965360 117 dbSNP
rs1241802053 132 dbSNP
rs587727519 138 dbSNP
rs1000735222 144 dbSNP
rs1030836723 161 dbSNP
rs17073353 165 dbSNP
rs1373424232 169 dbSNP
rs782533131 171 dbSNP
rs1326797876 182 dbSNP
rs1405025656 183 dbSNP
rs1389740936 188 dbSNP
rs782540935 190 dbSNP
rs187945530 194 dbSNP
rs117944757 195 dbSNP
rs1177424561 197 dbSNP
rs975638488 207 dbSNP
rs1254389402 208 dbSNP
rs587598947 215 dbSNP
rs1450751041 228 dbSNP
rs191979702 232 dbSNP
rs1207276749 241 dbSNP
rs952977143 246 dbSNP
rs1351948822 248 dbSNP
rs587730925 249 dbSNP
rs983032974 260 dbSNP
rs1238667844 298 dbSNP
rs1350099897 302 dbSNP
rs141711877 306 dbSNP
rs1436007763 315 dbSNP
rs1329574711 320 dbSNP
rs782162769 322 dbSNP
rs1383737322 325 dbSNP
rs1361034663 326 dbSNP
rs1157953683 338 dbSNP
rs1417829981 341 dbSNP
rs1396359219 344 dbSNP
rs1172717259 348 dbSNP
rs587679415 351 dbSNP
rs1244629240 359 dbSNP
rs587734532 364 dbSNP
rs1262965268 369 dbSNP
rs782455417 370 dbSNP
rs112847005 373 dbSNP
rs754715779 384 dbSNP
rs1281053562 396 dbSNP
rs1218724026 397 dbSNP
rs185221569 401 dbSNP
rs1272166665 404 dbSNP
rs148470259 419 dbSNP
rs145358007 420 dbSNP
rs1297426522 421 dbSNP
rs1398056281 428 dbSNP
rs1377216644 430 dbSNP
rs1334172723 434 dbSNP
rs1422564689 438 dbSNP
rs147679083 440 dbSNP
rs782124735 442 dbSNP
rs1477979718 443 dbSNP
rs1423336923 449 dbSNP
rs1191967632 457 dbSNP
rs782593774 466 dbSNP
rs782495807 471 dbSNP
rs1486900803 477 dbSNP
rs188233236 482 dbSNP
rs1209448352 491 dbSNP
rs1440748375 494 dbSNP
rs903687590 495 dbSNP
rs1196598902 501 dbSNP
rs78129129 506 dbSNP
rs1052317577 524 dbSNP
rs892361714 536 dbSNP
rs1007874077 546 dbSNP
rs1357247274 547 dbSNP
rs1019687826 566 dbSNP
rs1447270992 569 dbSNP
rs1014479 579 dbSNP
rs996995990 586 dbSNP
rs1465762998 588 dbSNP
rs1399096882 597 dbSNP
rs184378840 607 dbSNP
rs1168928809 630 dbSNP
rs782227164 633 dbSNP
rs952863069 634 dbSNP
rs587703222 642 dbSNP
rs1472135044 653 dbSNP
rs782661534 654 dbSNP
rs982918123 655 dbSNP
rs1457432423 656 dbSNP
rs1256437529 657 dbSNP
rs2010315 658 dbSNP
rs1323266271 660 dbSNP
rs1290408351 661 dbSNP
rs142329763 665 dbSNP
rs1227656111 667 dbSNP
rs2010314 675 dbSNP
rs587597727 676 dbSNP
rs915889029 677 dbSNP
rs781927671 681 dbSNP
rs1446924409 682 dbSNP
rs587642816 695 dbSNP
rs1375632120 705 dbSNP
rs1328844104 714 dbSNP
rs1462726538 720 dbSNP
rs1350829391 726 dbSNP
rs1164588398 731 dbSNP
rs1404038126 738 dbSNP
rs1410809299 750 dbSNP
rs1179294531 752 dbSNP
rs1439191274 758 dbSNP
rs62416961 761 dbSNP
rs1236489214 777 dbSNP
rs5879136 781 dbSNP
rs1488960425 787 dbSNP
rs979263044 790 dbSNP
rs1220559432 791 dbSNP
rs1319811756 802 dbSNP
rs587722442 809 dbSNP
rs1240847403 811 dbSNP
rs1352293000 812 dbSNP
rs936527558 816 dbSNP
rs1306537867 818 dbSNP
rs73541464 827 dbSNP
rs1367885950 830 dbSNP
rs1293236642 832 dbSNP
rs892413453 842 dbSNP
rs1347416486 845 dbSNP
rs781890891 851 dbSNP
rs188293635 852 dbSNP
rs1378532365 870 dbSNP
rs374591346 870 dbSNP
rs782351252 872 dbSNP
rs1424759876 875 dbSNP
rs587730402 876 dbSNP
rs1487369420 880 dbSNP
rs1265114881 881 dbSNP
rs1217242183 891 dbSNP
rs1487955325 894 dbSNP
rs1283190910 895 dbSNP
rs1234790734 898 dbSNP
rs587611931 904 dbSNP
rs1300196414 908 dbSNP
rs1217171868 913 dbSNP
rs1342741148 915 dbSNP
rs180905776 924 dbSNP
rs1399868902 926 dbSNP
rs1359187550 929 dbSNP
rs1314781217 930 dbSNP
rs1027161116 939 dbSNP
rs1466635162 962 dbSNP
rs1377186983 963 dbSNP
rs888172612 974 dbSNP
rs1174179556 978 dbSNP
rs1430587835 982 dbSNP
rs1425490412 983 dbSNP
rs1194135797 985 dbSNP
rs1004407410 992 dbSNP
rs1260982562 1000 dbSNP
rs368709487 1005 dbSNP
rs146621216 1013 dbSNP
rs960312337 1014 dbSNP
rs1254948479 1019 dbSNP
rs993490465 1022 dbSNP
rs1023183347 1031 dbSNP
rs1319566426 1032 dbSNP
rs970477974 1035 dbSNP
rs1279161098 1037 dbSNP
rs184599888 1038 dbSNP
rs781975327 1039 dbSNP
rs1339025359 1056 dbSNP
rs926064464 1059 dbSNP
rs1315407167 1063 dbSNP
rs1397163751 1065 dbSNP
rs1301230331 1066 dbSNP
rs1467325636 1068 dbSNP
rs111596260 1078 dbSNP
rs987970785 1085 dbSNP
rs1171062704 1088 dbSNP
rs1464933928 1090 dbSNP
rs913736446 1093 dbSNP
rs943844583 1118 dbSNP
rs1189502588 1122 dbSNP
rs1424382990 1144 dbSNP
rs1254860391 1145 dbSNP
rs1041365489 1156 dbSNP
rs899718964 1157 dbSNP
rs1179625324 1161 dbSNP
rs1458783635 1163 dbSNP
rs932325112 1174 dbSNP
rs782780530 1175 dbSNP
rs888224956 1177 dbSNP
rs1316426350 1178 dbSNP
rs1267667553 1179 dbSNP
rs1246159957 1188 dbSNP
rs778554368 1198 dbSNP
rs1340403032 1200 dbSNP
rs1310590916 1204 dbSNP
rs1003957440 1210 dbSNP
rs587713323 1213 dbSNP
rs1015808906 1215 dbSNP
rs73541466 1217 dbSNP
rs1014396122 1218 dbSNP
rs1464306268 1226 dbSNP
rs1023658997 1227 dbSNP
rs1394047796 1228 dbSNP
rs1164845566 1239 dbSNP
rs1458299256 1246 dbSNP
rs1367846425 1256 dbSNP
rs1162050115 1259 dbSNP
rs6901156 1273 dbSNP
rs782647486 1282 dbSNP
rs371106576 1286 dbSNP
rs1456222092 1289 dbSNP
rs374315003 1293 dbSNP
rs1210822871 1296 dbSNP
rs1356203663 1303 dbSNP
rs782712788 1312 dbSNP
rs1242998295 1313 dbSNP
rs1354474331 1317 dbSNP
rs1308690206 1323 dbSNP
rs115929516 1326 dbSNP
rs1333048702 1327 dbSNP
rs988861272 1342 dbSNP
rs911940128 1352 dbSNP
rs1389800680 1369 dbSNP
rs1301195738 1389 dbSNP
rs1421503278 1392 dbSNP
rs1380372960 1400 dbSNP
rs587640378 1406 dbSNP
rs1157534731 1409 dbSNP
rs1468233424 1413 dbSNP
rs782005947 1414 dbSNP
rs781821402 1417 dbSNP
rs1451360284 1418 dbSNP
rs1265765046 1419 dbSNP
rs782638554 1421 dbSNP
rs1488939654 1422 dbSNP
rs1285309303 1423 dbSNP
rs782490164 1424 dbSNP
rs189333914 1426 dbSNP
rs1275633020 1434 dbSNP
rs932571929 1436 dbSNP
rs1330288429 1444 dbSNP
rs587766966 1454 dbSNP
rs782779290 1463 dbSNP
rs939634085 1464 dbSNP
rs1398481081 1469 dbSNP
rs782455590 1472 dbSNP
rs587642632 1484 dbSNP
rs1172776732 1489 dbSNP
rs1477524073 1494 dbSNP
rs181633539 1495 dbSNP
rs1196300107 1499 dbSNP
rs1478399648 1505 dbSNP
rs1263147101 1507 dbSNP
rs1214332658 1511 dbSNP
rs1014861307 1518 dbSNP
rs147893816 1526 dbSNP
rs1343145583 1527 dbSNP
rs1281077397 1530 dbSNP
rs1220263208 1531 dbSNP
rs1341007971 1548 dbSNP
rs1277451219 1554 dbSNP
rs1428608540 1559 dbSNP
rs906143317 1564 dbSNP
rs186935662 1570 dbSNP
rs1413482318 1572 dbSNP
rs1403451308 1586 dbSNP
rs1173228386 1587 dbSNP
rs6906094 1593 dbSNP
rs1423418553 1594 dbSNP
rs1474098649 1601 dbSNP
rs587608322 1605 dbSNP
rs1186951382 1626 dbSNP
rs1460111275 1628 dbSNP
rs1199549986 1638 dbSNP
rs1318306325 1662 dbSNP
rs1257250974 1663 dbSNP
rs1212728673 1672 dbSNP
rs1381255366 1673 dbSNP
rs1284211329 1686 dbSNP
rs1446675989 1691 dbSNP
rs1379996089 1695 dbSNP
rs11373481 1698 dbSNP
rs1332932058 1698 dbSNP
rs369984424 1698 dbSNP
rs1168782524 1704 dbSNP
rs200949375 1708 dbSNP
rs202240592 1709 dbSNP
rs1407521637 1710 dbSNP
rs191406717 1712 dbSNP
rs1162698731 1714 dbSNP
rs368885332 1718 dbSNP
rs1240157141 1722 dbSNP
rs1179478133 1735 dbSNP
rs1457535769 1735 dbSNP
rs587709856 1736 dbSNP
rs1019003128 1744 dbSNP
rs1202195067 1746 dbSNP
rs966134237 1753 dbSNP
rs1323377739 1759 dbSNP
rs977018198 1772 dbSNP
rs1290471480 1793 dbSNP
rs868970063 1799 dbSNP
rs1356628391 1805 dbSNP
rs781920733 1815 dbSNP
rs2213842 1821 dbSNP
rs1296762426 1825 dbSNP
rs1350872614 1833 dbSNP
rs1439090061 1833 dbSNP
rs954138158 1838 dbSNP
rs1423358859 1840 dbSNP
rs1382241261 1846 dbSNP
rs79763880 1854 dbSNP
rs1439252880 1858 dbSNP
rs909772237 1860 dbSNP
rs939686862 1861 dbSNP
rs1036681067 1875 dbSNP
rs1406085660 1877 dbSNP
rs1175221801 1879 dbSNP
rs1489329497 1880 dbSNP
rs1247131021 1887 dbSNP
rs1221652503 1889 dbSNP
rs1489841412 1891 dbSNP
rs1287469043 1893 dbSNP
rs1216735296 1894 dbSNP
rs1315919345 1901 dbSNP
rs776964335 1909 dbSNP
rs1304374653 1917 dbSNP
rs1220644813 1924 dbSNP
rs1368731904 1925 dbSNP
rs587751980 1928 dbSNP
rs1274698062 1941 dbSNP
rs1403566440 1943 dbSNP
rs1363016716 1944 dbSNP
rs1298830732 1945 dbSNP
rs1419204516 1949 dbSNP
rs2213843 1955 dbSNP
rs1434052631 1968 dbSNP
rs1425527700 1971 dbSNP
rs1198439443 1973 dbSNP
rs1479388962 1979 dbSNP
rs587657493 1984 dbSNP
rs949822974 1989 dbSNP
rs1258494966 1992 dbSNP
rs1211791347 1997 dbSNP
rs1312413402 1998 dbSNP
rs1262843941 2004 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 619208.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acucUGUCC-AA------GUACGACGAUa 5'
              | ||| ||      |||||||||| 
Target 5' acccAAAGGAUUAUAAAACAUGCUGCUAu 3'
7 - 35
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000368656.2 | 3UTR | AUAUAUACCCAAAGGAUUAUAAAACAUGCUGCUAUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

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