miRTarBase - #MIRT551674


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pre-miRNA Information
pre-miRNA hsa-mir-3618   
Genomic Coordinates chr22: 20085746 - 20085833
Description Homo sapiens miR-3618 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3618
Sequence 52| UGUCUACAUUAAUGAAAAGAGC |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 11 22 + 20085807 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30730356 3 COSMIC
COSN30178222 4 COSMIC
COSN26973254 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs12159555 4 dbSNP
rs761877586 8 dbSNP
Putative Targets

Gene Information
Gene Symbol BBS5   
Synonyms -
Description Bardet-Biedl syndrome 5
Transcript NM_152384   
Expression
Putative miRNA Targets on BBS5
3'UTR of BBS5
(miRNA target sites are highlighted)		 
>BBS5|NM_152384|3'UTR
   1 TTGACCTTGAGTTGAGATGGATTTCTATTAAAGATATCTCTAGTTTAAAGATACTAGTCACCTGCCATAAGTCATGGAAT
  81 AGTTTTTATATTTACAGCTTTTATATTTAAAACTTGTAAGAGTTTTTTTAATGATTGAGGAAAAAGTCATTTAGAAAACT
 161 TCAGTTTTCGGCCAGCGCGTCGAGGGAGGGGCCAGCGACACATGGCCTAGTAACCGTCCGGCCGCGGCGCTGGCTTAAGC
 241 CATGGCTGAGGGTAGCTGGATTCCTCAGGCCCGGGCGCTCCTACAGCAGTGCCTGCACGCCCGGCTGCAAATTCGCCCAG
 321 CCAATGGGGACGTTGCGGCCCAGTGGGTGGAGGTCCAAAGAGGACTGGTGATCTACGTGTGCTTTTTCAAGGGAGCTGAT
 401 AAAGAACTTCTTCCCAAAATGGCCGAAGCTGGACTGTACTGCTGCCATCTCTGGCTCACTGCAACCTCCCTGCCTGATTC
 481 TCCTGCCTCAGCCTGCCGAGTGCCTGCGATTACAGGCGCGCGCCGCCACACCTGACTGGTTTTCGTATTTTTTTGGTGGA
 561 GACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTG
 641 CCGGGATTGCAGACGGAGTCTGGTTCACTTAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCCGCTCGC
 721 TACAACCTCCACCTCCCAGCTGCCTGCCTTGGCCTCCCGAAGTGCCAAGAGTGCAGCCTCTGCCCGGCCGCCACCCCGTC
 801 TGGGAAGTGAGGAGCGTCTCTGCCTGGCTGCCCATTGTCTGGGACGTGAGCAGCCCCTCTGCCTGGCTGCCCAGTCTGGA
 881 AAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCACCCGCCATCCCATCTAGG
 961 AAGTGAGGAGCTTCTCTGCCTGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCGGCCGCGACCCCATTTGGGA
1041 GGTGAGGAGCAACTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCCGCCTGGCAACCGCCCCGTCTGATAAGT
1121 AAGGAGCCCCTCTGCCCAGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCTGCCCAGCAGCCACCCTGTCTGGGAAGT
1201 GAGGAGCGTCTCCGCCCGGCAGCCACCCAGTCCGGGAGGGAGGTGGGGGGGTCAGTCCCCCGTCCGGCCAGCCGCCCCGT
1281 CCGGGAGGTGAGGGGCGCCTCTGCCCAGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCCGCCAGCCACCCCGTCC
1361 GGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGATCAGCCCCCCGCCC
1441 GGCTAGCCGCCCCGTCCGGGAGGCGAGGGGCGCCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGG
1521 CCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGG
1601 GGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTTAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG
1681 GAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAGCGGGCGATGATGACAGTGGCG
1761 GCTTTGTGGAGTGGAGGTGGGGGGAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGT
1841 AGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAA
1921 ACTTCAGTTTTCTAAAAATTATATTTAAAATTGTAATCAAAATGTACCTAGTTTATAAATGTTTATTTTGTACTTAATAC
2001 CTGTAAAGTCTTAGTTTTCAGACATTAAGTGACTGTATCATGTTCGGTTTAATAAAGAATTTATGCAGCACCAAAAAAAA
2081 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgAGAAAAGUAAUUACAUCUGu 5'
            | ||||: ||::|| |||| 
Target 5' cgTATTTTT-TTGGTGGAGACg 3'
 544 - 564 135.00 -9.80
2 
miRNA  3' cgagaaaaGUAAUUACAUCUgu 5'
                  ::|  :||||||  
Target 5' ggttgccgTGTCTGTGTAGAaa 3'
 1814 - 1835 122.00 -7.60
3 
miRNA  3' cgagaaaaguaaUUACAUCUGu 5'
                      | || |||| 
Target 5' cgaggtgccgggATTGCAGACg 3'
 634 - 655 110.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30146841 15 COSMIC
COSN30475634 20 COSMIC
COSN30494344 24 COSMIC
COSN31504611 26 COSMIC
COSN30534171 33 COSMIC
COSN31573797 34 COSMIC
COSN8273469 61 COSMIC
COSN31567360 71 COSMIC
COSN30178143 88 COSMIC
COSN20074420 108 COSMIC
COSN19420273 121 COSMIC
COSN30132565 134 COSMIC
COSN30138187 146 COSMIC
COSN31588525 187 COSMIC
COSN5488948 221 COSMIC
COSN26967694 226 COSMIC
COSN18727363 227 COSMIC
COSN31497308 274 COSMIC
COSN31497299 275 COSMIC
COSN30137310 300 COSMIC
COSN30125265 304 COSMIC
COSN30129153 315 COSMIC
COSN30112536 333 COSMIC
COSN30179613 353 COSMIC
COSN31509244 359 COSMIC
COSN30450394 368 COSMIC
COSN30122814 377 COSMIC
COSN31581391 409 COSMIC
COSN30467987 416 COSMIC
COSN26967697 417 COSMIC
COSN30536108 420 COSMIC
COSN30447305 425 COSMIC
COSN26967692 444 COSMIC
COSN26967693 462 COSMIC
COSN19630606 465 COSMIC
COSN24382257 474 COSMIC
COSN24385431 499 COSMIC
COSN30168232 504 COSMIC
COSN31578280 508 COSMIC
COSN32052707 508 COSMIC
COSN32052708 513 COSMIC
COSN30499773 514 COSMIC
COSN24217619 726 COSMIC
COSN14665175 1044 COSMIC
COSN26588846 1257 COSMIC
COSN26616831 1291 COSMIC
COSN16083694 1397 COSMIC
COSN20985838 1532 COSMIC
COSN29131410 1593 COSMIC
COSN20097339 1922 COSMIC
COSN19185978 1963 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1241544659 1 dbSNP
rs772680115 2 dbSNP
rs202116098 3 dbSNP
rs747477278 5 dbSNP
rs768287987 6 dbSNP
rs761248580 7 dbSNP
rs764760084 12 dbSNP
rs780195284 13 dbSNP
rs1202276526 19 dbSNP
rs773086300 26 dbSNP
rs1327645456 29 dbSNP
rs373456112 31 dbSNP
rs1386101544 32 dbSNP
rs747114614 33 dbSNP
rs1184062764 35 dbSNP
rs962799631 36 dbSNP
rs766379622 38 dbSNP
rs1327594892 39 dbSNP
rs547615948 43 dbSNP
rs1429675086 44 dbSNP
rs1395576094 47 dbSNP
rs1167521342 49 dbSNP
rs1460569510 55 dbSNP
rs370423950 61 dbSNP
rs990524513 67 dbSNP
rs972786491 95 dbSNP
rs1023343629 98 dbSNP
rs1173140341 98 dbSNP
rs970636869 107 dbSNP
rs1454167421 117 dbSNP
rs1431317019 119 dbSNP
rs1251534743 122 dbSNP
rs1468133928 122 dbSNP
rs1175473334 123 dbSNP
rs918596048 125 dbSNP
rs1249430733 136 dbSNP
rs764174910 150 dbSNP
rs992100661 151 dbSNP
rs1340894630 162 dbSNP
rs536585456 163 dbSNP
rs556433938 170 dbSNP
rs570281196 171 dbSNP
rs926215370 177 dbSNP
rs1441414682 178 dbSNP
rs538662682 179 dbSNP
rs558876095 180 dbSNP
rs911888235 181 dbSNP
rs1298760316 182 dbSNP
rs572469141 183 dbSNP
rs1176043922 188 dbSNP
rs1039140790 189 dbSNP
rs1455017281 190 dbSNP
rs1284600129 192 dbSNP
rs1179266764 194 dbSNP
rs541516223 197 dbSNP
rs1344196489 198 dbSNP
rs1209608092 203 dbSNP
rs1223368519 216 dbSNP
rs111616190 217 dbSNP
rs1349727694 218 dbSNP
rs997562694 219 dbSNP
rs554845609 220 dbSNP
rs147310933 221 dbSNP
rs543597166 223 dbSNP
rs150152332 224 dbSNP
rs552074388 224 dbSNP
rs1186748562 225 dbSNP
rs1194355583 225 dbSNP
rs1026119026 226 dbSNP
rs768936274 226 dbSNP
rs1211513068 227 dbSNP
rs879239237 229 dbSNP
rs1004746172 230 dbSNP
rs111736834 243 dbSNP
rs925581009 244 dbSNP
rs545506189 248 dbSNP
rs896156417 250 dbSNP
rs1295137369 251 dbSNP
rs935671439 256 dbSNP
rs3087952 258 dbSNP
rs1326420589 264 dbSNP
rs1316809608 271 dbSNP
rs1011832039 273 dbSNP
rs1479425079 274 dbSNP
rs1198590358 277 dbSNP
rs1419407609 281 dbSNP
rs1474791625 282 dbSNP
rs372350897 284 dbSNP
rs967799836 286 dbSNP
rs375408097 299 dbSNP
rs979341057 300 dbSNP
rs528203371 303 dbSNP
rs956310554 304 dbSNP
rs1268951731 314 dbSNP
rs1052204521 316 dbSNP
rs922991666 317 dbSNP
rs141011904 318 dbSNP
rs1439138915 322 dbSNP
rs12692910 324 dbSNP
rs530233404 328 dbSNP
rs1408915576 330 dbSNP
rs550306767 333 dbSNP
rs12692911 335 dbSNP
rs1475664302 336 dbSNP
rs1007138023 337 dbSNP
rs539290131 338 dbSNP
rs1469650650 354 dbSNP
rs1255178204 365 dbSNP
rs1222516878 376 dbSNP
rs974744664 377 dbSNP
rs558708957 378 dbSNP
rs994718972 379 dbSNP
rs868518287 380 dbSNP
rs1343568541 385 dbSNP
rs1303307821 387 dbSNP
rs111267796 390 dbSNP
rs1373620001 394 dbSNP
rs1269941230 398 dbSNP
rs1049398710 399 dbSNP
rs1013662469 401 dbSNP
rs1224940580 405 dbSNP
rs1410030459 407 dbSNP
rs907708608 408 dbSNP
rs1024095431 423 dbSNP
rs940486908 425 dbSNP
rs1289694992 426 dbSNP
rs1490202191 431 dbSNP
rs1455436426 438 dbSNP
rs535172709 439 dbSNP
rs1191995354 444 dbSNP
rs1263772035 445 dbSNP
rs979351126 451 dbSNP
rs896376904 456 dbSNP
rs1206797685 460 dbSNP
rs1483405022 462 dbSNP
rs868109795 465 dbSNP
rs1011884644 466 dbSNP
rs1209296554 473 dbSNP
rs1044717565 477 dbSNP
rs1190786137 487 dbSNP
rs1370804294 498 dbSNP
rs903628735 498 dbSNP
rs555104065 499 dbSNP
rs1311023024 501 dbSNP
rs1436433969 502 dbSNP
rs1359536516 508 dbSNP
rs879106924 509 dbSNP
rs1406112377 510 dbSNP
rs184910873 512 dbSNP
rs956196497 513 dbSNP
rs1256847966 516 dbSNP
rs1010376107 517 dbSNP
rs1382917040 518 dbSNP
rs1257087199 519 dbSNP
rs1019222558 520 dbSNP
rs1285935193 521 dbSNP
rs537260804 522 dbSNP
rs770283034 523 dbSNP
rs557092760 524 dbSNP
rs577094049 525 dbSNP
rs1341379876 526 dbSNP
rs898773746 527 dbSNP
rs534878969 532 dbSNP
rs1346693465 533 dbSNP
rs1047711267 536 dbSNP
rs1457907103 538 dbSNP
rs1313156605 541 dbSNP
rs1417268153 541 dbSNP
rs907930016 544 dbSNP
rs763310295 546 dbSNP
rs546065530 548 dbSNP
rs766863145 548 dbSNP
rs1241001488 549 dbSNP
rs917855710 563 dbSNP
rs947983521 564 dbSNP
rs1045163856 572 dbSNP
rs1486813922 573 dbSNP
rs1234634465 576 dbSNP
rs1203241182 580 dbSNP
rs1321771930 582 dbSNP
rs866265072 584 dbSNP
rs936295668 585 dbSNP
rs1394851727 587 dbSNP
rs1439877817 588 dbSNP
rs1052199543 591 dbSNP
rs559123303 595 dbSNP
rs1010428588 603 dbSNP
rs1019107283 605 dbSNP
rs1185104423 607 dbSNP
rs113586716 608 dbSNP
rs867315627 609 dbSNP
rs181495249 610 dbSNP
rs1030621139 611 dbSNP
rs1215124194 613 dbSNP
rs1364970519 618 dbSNP
rs184937359 619 dbSNP
rs952084303 623 dbSNP
rs985165400 625 dbSNP
rs530487302 627 dbSNP
rs941764327 628 dbSNP
rs1454884696 632 dbSNP
rs1388669183 633 dbSNP
rs1335091834 635 dbSNP
rs962082735 636 dbSNP
rs1392612456 637 dbSNP
rs1169756736 639 dbSNP
rs1454124210 641 dbSNP
rs1393615805 642 dbSNP
rs991981016 643 dbSNP
rs111567263 644 dbSNP
rs917741218 646 dbSNP
rs1447719133 655 dbSNP
rs948004439 656 dbSNP
rs1210014593 657 dbSNP
rs980716623 664 dbSNP
rs1315195267 671 dbSNP
rs371518337 680 dbSNP
rs563883914 681 dbSNP
rs532728219 691 dbSNP
rs1324053809 696 dbSNP
rs1205368554 697 dbSNP
rs1306520422 699 dbSNP
rs1389795376 700 dbSNP
rs1240988339 704 dbSNP
rs200268167 704 dbSNP
rs936364929 706 dbSNP
rs1047271401 707 dbSNP
rs1466873191 708 dbSNP
rs1177360401 711 dbSNP
rs896654857 713 dbSNP
rs111620696 715 dbSNP
rs1045192578 716 dbSNP
rs1484681719 716 dbSNP
rs892246065 717 dbSNP
rs1280640682 718 dbSNP
rs905302052 719 dbSNP
rs1349651598 720 dbSNP
rs943758078 722 dbSNP
rs566330204 723 dbSNP
rs1416764403 726 dbSNP
rs1289003651 734 dbSNP
rs1040600886 741 dbSNP
rs1414233473 742 dbSNP
rs752026882 748 dbSNP
rs1354188321 751 dbSNP
rs1336688278 757 dbSNP
rs1415454236 759 dbSNP
rs1000939174 760 dbSNP
rs1156481090 767 dbSNP
rs1458431624 768 dbSNP
rs1181762638 771 dbSNP
rs1412230313 778 dbSNP
rs1032379174 781 dbSNP
rs1239185161 784 dbSNP
rs1473920092 784 dbSNP
rs535027162 786 dbSNP
rs892464821 787 dbSNP
rs1009902917 789 dbSNP
rs1029257952 790 dbSNP
rs189448631 791 dbSNP
rs985948945 793 dbSNP
rs1006244250 794 dbSNP
rs1466397643 794 dbSNP
rs568592307 795 dbSNP
rs1300102750 796 dbSNP
rs1014863791 798 dbSNP
rs537533170 799 dbSNP
rs1388969876 801 dbSNP
rs1324775425 802 dbSNP
rs556914609 803 dbSNP
rs1459432361 805 dbSNP
rs962134265 816 dbSNP
rs992200486 817 dbSNP
rs1346098177 818 dbSNP
rs1225209486 822 dbSNP
rs963130476 830 dbSNP
rs1024976159 834 dbSNP
rs1204854486 837 dbSNP
rs1252665183 840 dbSNP
rs576955398 845 dbSNP
rs969257001 846 dbSNP
rs980985355 852 dbSNP
rs1479428772 855 dbSNP
rs1194754470 857 dbSNP
rs983451998 872 dbSNP
rs1366315181 878 dbSNP
rs1268903956 881 dbSNP
rs1324837662 889 dbSNP
rs1481707552 892 dbSNP
rs200279857 893 dbSNP
rs539394855 902 dbSNP
rs1045288236 903 dbSNP
rs1429459037 904 dbSNP
rs1449859255 905 dbSNP
rs905354351 906 dbSNP
rs1193272555 907 dbSNP
rs1477133043 910 dbSNP
rs1353010534 912 dbSNP
rs1461628870 919 dbSNP
rs1222494364 924 dbSNP
rs1437304458 929 dbSNP
rs1273124642 931 dbSNP
rs936779868 932 dbSNP
rs1053832895 933 dbSNP
rs553233099 935 dbSNP
rs925244151 937 dbSNP
rs1303071710 940 dbSNP
rs936568103 940 dbSNP
rs1217811314 943 dbSNP
rs1369334495 944 dbSNP
rs892492601 945 dbSNP
rs572758880 946 dbSNP
rs932234974 951 dbSNP
rs913564284 954 dbSNP
rs1430281163 955 dbSNP
rs1374646228 970 dbSNP
rs541439143 973 dbSNP
rs1415961556 977 dbSNP
rs1344699672 979 dbSNP
rs943810520 981 dbSNP
rs7589199 982 dbSNP
rs575023560 983 dbSNP
rs544279771 986 dbSNP
rs1483696976 988 dbSNP
rs563776184 993 dbSNP
rs7575394 994 dbSNP
rs1291954300 995 dbSNP
rs963180221 1000 dbSNP
rs1278904866 1001 dbSNP
rs994581105 1005 dbSNP
rs1026050958 1006 dbSNP
rs1289623741 1008 dbSNP
rs1346869229 1011 dbSNP
rs1268762967 1012 dbSNP
rs1051012824 1013 dbSNP
rs1486456973 1014 dbSNP
rs950458743 1018 dbSNP
rs1188683831 1020 dbSNP
rs1359461116 1021 dbSNP
rs992524078 1022 dbSNP
rs1456868377 1025 dbSNP
rs888063653 1026 dbSNP
rs1006420161 1027 dbSNP
rs866903124 1028 dbSNP
rs376690192 1031 dbSNP
rs1036360174 1034 dbSNP
rs1302580156 1047 dbSNP
rs980979502 1048 dbSNP
rs1484444411 1050 dbSNP
rs368799097 1051 dbSNP
rs185206217 1054 dbSNP
rs1326694375 1061 dbSNP
rs1359595369 1063 dbSNP
rs1025028519 1065 dbSNP
rs936812696 1066 dbSNP
rs1315282172 1067 dbSNP
rs1310495906 1068 dbSNP
rs528769355 1070 dbSNP
rs1361023580 1071 dbSNP
rs1288122367 1077 dbSNP
rs374587441 1079 dbSNP
rs568452169 1081 dbSNP
rs1322791030 1082 dbSNP
rs1457847371 1088 dbSNP
rs914009850 1093 dbSNP
rs189676753 1094 dbSNP
rs1218479038 1095 dbSNP
rs957860708 1096 dbSNP
rs890414590 1098 dbSNP
rs1463817157 1099 dbSNP
rs1007471697 1103 dbSNP
rs182027521 1105 dbSNP
rs994612209 1106 dbSNP
rs1246327562 1108 dbSNP
rs1026542376 1110 dbSNP
rs913773551 1111 dbSNP
rs1408722740 1115 dbSNP
rs1300099101 1116 dbSNP
rs1436035027 1117 dbSNP
rs965114043 1118 dbSNP
rs1390134369 1120 dbSNP
rs1291906615 1122 dbSNP
rs1326433751 1122 dbSNP
rs1459478077 1128 dbSNP
rs1168451038 1129 dbSNP
rs1448054072 1130 dbSNP
rs570812959 1133 dbSNP
rs976523894 1134 dbSNP
rs1432289531 1135 dbSNP
rs1211188215 1139 dbSNP
rs1014386003 1142 dbSNP
rs539630964 1143 dbSNP
rs932323291 1144 dbSNP
rs1050666020 1145 dbSNP
rs1343265630 1146 dbSNP
rs909458495 1150 dbSNP
rs552716648 1151 dbSNP
rs1233262982 1156 dbSNP
rs1337104246 1156 dbSNP
rs1330780171 1159 dbSNP
rs1299456065 1166 dbSNP
rs969708222 1168 dbSNP
rs981053068 1169 dbSNP
rs566453480 1175 dbSNP
rs1313745484 1179 dbSNP
rs1373427820 1181 dbSNP
rs1226038390 1183 dbSNP
rs1169669790 1186 dbSNP
rs1375637347 1190 dbSNP
rs1282748120 1193 dbSNP
rs1433271270 1196 dbSNP
rs186068899 1205 dbSNP
rs1179951498 1207 dbSNP
rs958255159 1208 dbSNP
rs1275224601 1209 dbSNP
rs1265320587 1214 dbSNP
rs1235646753 1215 dbSNP
rs989680084 1215 dbSNP
rs1183217154 1216 dbSNP
rs1233580180 1218 dbSNP
rs1471186617 1219 dbSNP
rs1395821464 1220 dbSNP
rs914024961 1221 dbSNP
rs376642564 1226 dbSNP
rs1466186583 1229 dbSNP
rs1052279537 1230 dbSNP
rs1252518571 1237 dbSNP
rs1456595558 1240 dbSNP
rs1176905766 1241 dbSNP
rs943360987 1242 dbSNP
rs1257955020 1244 dbSNP
rs1200802851 1245 dbSNP
rs1226713680 1245 dbSNP
rs541406715 1245 dbSNP
rs1038951369 1246 dbSNP
rs554978381 1247 dbSNP
rs930533346 1247 dbSNP
rs1396940153 1248 dbSNP
rs1467970859 1251 dbSNP
rs1458368633 1252 dbSNP
rs1333082556 1257 dbSNP
rs1162617213 1258 dbSNP
rs1047564363 1259 dbSNP
rs1370090296 1262 dbSNP
rs1188080165 1263 dbSNP
rs1335887224 1264 dbSNP
rs1247657889 1266 dbSNP
rs1206988389 1267 dbSNP
rs1443706992 1270 dbSNP
rs1277229681 1274 dbSNP
rs190566557 1275 dbSNP
rs1247240800 1278 dbSNP
rs1224585582 1279 dbSNP
rs1294992421 1280 dbSNP
rs543814279 1283 dbSNP
rs1388893118 1284 dbSNP
rs1321835293 1289 dbSNP
rs1322353477 1290 dbSNP
rs1392869392 1290 dbSNP
rs1203327416 1291 dbSNP
rs1273938222 1297 dbSNP
rs1451612320 1298 dbSNP
rs1242884149 1299 dbSNP
rs1198328535 1307 dbSNP
rs1449922647 1308 dbSNP
rs1439734826 1311 dbSNP
rs1223783509 1312 dbSNP
rs557843676 1313 dbSNP
rs577630104 1315 dbSNP
rs1231035794 1318 dbSNP
rs370773265 1319 dbSNP
rs1273867350 1326 dbSNP
rs1472227821 1332 dbSNP
rs1200058137 1335 dbSNP
rs886232096 1336 dbSNP
rs1479322767 1338 dbSNP
rs1171681081 1340 dbSNP
rs1396809630 1341 dbSNP
rs1172150564 1344 dbSNP
rs1411232072 1345 dbSNP
rs1248483314 1346 dbSNP
rs1326280207 1347 dbSNP
rs1369393927 1349 dbSNP
rs1483040719 1353 dbSNP
rs1207811571 1354 dbSNP
rs559962884 1357 dbSNP
rs528826675 1358 dbSNP
rs1344066411 1360 dbSNP
rs542528342 1361 dbSNP
rs1271086171 1362 dbSNP
rs1341753729 1367 dbSNP
rs1408655853 1371 dbSNP
rs1309757081 1372 dbSNP
rs1348628856 1372 dbSNP
rs376640677 1372 dbSNP
rs1212959110 1374 dbSNP
rs1413032709 1377 dbSNP
rs71003094 1378 dbSNP
rs1177332122 1379 dbSNP
rs1272466588 1379 dbSNP
rs1472299926 1379 dbSNP
rs1410420371 1380 dbSNP
rs1490531025 1381 dbSNP
rs1481183493 1383 dbSNP
rs1223202732 1384 dbSNP
rs1208431610 1386 dbSNP
rs1270924110 1389 dbSNP
rs1489829074 1390 dbSNP
rs1197937161 1391 dbSNP
rs1373362736 1393 dbSNP
rs13394217 1394 dbSNP
rs13394041 1397 dbSNP
rs1408653678 1401 dbSNP
rs13394219 1402 dbSNP
rs1386494471 1406 dbSNP
rs1389065611 1407 dbSNP
rs1180544715 1409 dbSNP
rs1424706792 1410 dbSNP
rs373984245 1410 dbSNP
rs1243387045 1411 dbSNP
rs1207634414 1413 dbSNP
rs1304388597 1416 dbSNP
rs1463183720 1418 dbSNP
rs1269422268 1419 dbSNP
rs1215848243 1421 dbSNP
rs1364274623 1421 dbSNP
rs1229839037 1422 dbSNP
rs1316032815 1426 dbSNP
rs7601937 1427 dbSNP
rs1290749900 1431 dbSNP
rs1454369049 1431 dbSNP
rs1349868019 1432 dbSNP
rs1319395900 1433 dbSNP
rs1426947190 1434 dbSNP
rs1386206658 1435 dbSNP
rs1187560171 1437 dbSNP
rs530941005 1438 dbSNP
rs1249504109 1439 dbSNP
rs1186662150 1440 dbSNP
rs1428960368 1441 dbSNP
rs1297099552 1442 dbSNP
rs1223622629 1444 dbSNP
rs370072429 1445 dbSNP
rs1273710882 1447 dbSNP
rs1248286526 1448 dbSNP
rs1363371972 1449 dbSNP
rs374599471 1450 dbSNP
rs1289626491 1452 dbSNP
rs1382859713 1454 dbSNP
rs550661907 1455 dbSNP
rs1366707055 1458 dbSNP
rs1168425506 1459 dbSNP
rs1209156350 1463 dbSNP
rs1262252561 1465 dbSNP
rs1170631370 1466 dbSNP
rs1432124090 1471 dbSNP
rs1448489339 1472 dbSNP
rs13394247 1473 dbSNP
rs1014042486 1481 dbSNP
rs1202831488 1482 dbSNP
rs1247056897 1483 dbSNP
rs1444823743 1486 dbSNP
rs1228373214 1490 dbSNP
rs1164940484 1492 dbSNP
rs1382790088 1493 dbSNP
rs1406844800 1497 dbSNP
rs533242187 1501 dbSNP
rs1307902899 1508 dbSNP
rs1408396918 1510 dbSNP
rs1399034716 1512 dbSNP
rs1159646667 1515 dbSNP
rs13410229 1515 dbSNP
rs113272430 1517 dbSNP
rs1375542853 1518 dbSNP
rs879234042 1520 dbSNP
rs1411163367 1522 dbSNP
rs1320246542 1524 dbSNP
rs566315268 1527 dbSNP
rs1454715263 1528 dbSNP
rs529813613 1532 dbSNP
rs1339944825 1533 dbSNP
rs1244029326 1534 dbSNP
rs1227044090 1535 dbSNP
rs13422003 1537 dbSNP
rs1308212192 1547 dbSNP
rs1395806544 1547 dbSNP
rs1399686490 1548 dbSNP
rs71154654 1553 dbSNP
rs1338229059 1554 dbSNP
rs1469871974 1555 dbSNP
rs1261220065 1558 dbSNP
rs555245472 1559 dbSNP
rs71359499 1559 dbSNP
rs569015881 1561 dbSNP
rs1206625315 1563 dbSNP
rs1471145720 1564 dbSNP
rs1364276013 1565 dbSNP
rs1186650817 1567 dbSNP
rs1421776931 1569 dbSNP
rs1241540767 1572 dbSNP
rs1024465251 1575 dbSNP
rs1267186294 1576 dbSNP
rs537862254 1577 dbSNP
rs1185035145 1580 dbSNP
rs878860479 1580 dbSNP
rs569778089 1581 dbSNP
rs1240799380 1583 dbSNP
rs1316754848 1584 dbSNP
rs531965734 1585 dbSNP
rs552174139 1586 dbSNP
rs1318000593 1587 dbSNP
rs1366078296 1594 dbSNP
rs1385601767 1596 dbSNP
rs1452209930 1596 dbSNP
rs1456230458 1596 dbSNP
rs905554002 1597 dbSNP
rs577694102 1598 dbSNP
rs1247639590 1602 dbSNP
rs1191196891 1603 dbSNP
rs1285579874 1605 dbSNP
rs71154655 1606 dbSNP
rs71208013 1606 dbSNP
rs71134228 1607 dbSNP
rs1209724397 1608 dbSNP
rs1357769245 1609 dbSNP
rs1407288983 1610 dbSNP
rs1294460068 1611 dbSNP
rs1247130441 1612 dbSNP
rs188576031 1613 dbSNP
rs71619256 1614 dbSNP
rs1326467000 1617 dbSNP
rs1334938071 1618 dbSNP
rs1367337843 1621 dbSNP
rs1164047446 1624 dbSNP
rs1428856324 1625 dbSNP
rs1401651791 1626 dbSNP
rs553641704 1630 dbSNP
rs879020699 1630 dbSNP
rs573468781 1631 dbSNP
rs1309188822 1634 dbSNP
rs1337469843 1635 dbSNP
rs1223761066 1638 dbSNP
rs1226437860 1639 dbSNP
rs1215914413 1641 dbSNP
rs1287553188 1642 dbSNP
rs1273778668 1643 dbSNP
rs1221154273 1648 dbSNP
rs1347385158 1649 dbSNP
rs1385042613 1649 dbSNP
rs1408991698 1650 dbSNP
rs1323986039 1653 dbSNP
rs1001180811 1656 dbSNP
rs542397551 1658 dbSNP
rs1205219078 1659 dbSNP
rs71396918 1662 dbSNP
rs1482695086 1663 dbSNP
rs1032652237 1666 dbSNP
rs958286206 1667 dbSNP
rs1200734540 1668 dbSNP
rs1482946708 1669 dbSNP
rs1231577211 1673 dbSNP
rs1207033798 1677 dbSNP
rs1277466650 1682 dbSNP
rs1438115595 1682 dbSNP
rs1036480897 1684 dbSNP
rs990101786 1685 dbSNP
rs1471902179 1687 dbSNP
rs1283882999 1688 dbSNP
rs1021163123 1689 dbSNP
rs1430482479 1690 dbSNP
rs1481612683 1694 dbSNP
rs76655184 1695 dbSNP
rs967273598 1696 dbSNP
rs76798281 1698 dbSNP
rs898026645 1707 dbSNP
rs1013605393 1708 dbSNP
rs562379932 1709 dbSNP
rs1177217440 1712 dbSNP
rs1046934976 1714 dbSNP
rs911959472 1717 dbSNP
rs1406423640 1719 dbSNP
rs1179382543 1726 dbSNP
rs1470685782 1728 dbSNP
rs760374709 1741 dbSNP
rs1002622851 1742 dbSNP
rs1032218746 1744 dbSNP
rs1407992819 1745 dbSNP
rs191321841 1746 dbSNP
rs974727959 1751 dbSNP
rs1286246214 1760 dbSNP
rs920560483 1761 dbSNP
rs183253343 1763 dbSNP
rs1314662411 1767 dbSNP
rs1020784191 1769 dbSNP
rs144125247 1770 dbSNP
rs1450789170 1772 dbSNP
rs1385224143 1774 dbSNP
rs1337553674 1777 dbSNP
rs1453133975 1778 dbSNP
rs1048101860 1779 dbSNP
rs1161832609 1779 dbSNP
rs1384945188 1780 dbSNP
rs1182104967 1781 dbSNP
rs75897917 1785 dbSNP
rs949907929 1786 dbSNP
rs1187448943 1787 dbSNP
rs1000240778 1790 dbSNP
rs1484573673 1793 dbSNP
rs186980177 1797 dbSNP
rs1243778983 1800 dbSNP
rs1045505675 1801 dbSNP
rs1311250986 1803 dbSNP
rs879154674 1815 dbSNP
rs1216351263 1816 dbSNP
rs1227620269 1821 dbSNP
rs142813498 1822 dbSNP
rs1315932786 1828 dbSNP
rs1381730582 1834 dbSNP
rs1481770588 1835 dbSNP
rs1291164692 1839 dbSNP
rs976471424 1840 dbSNP
rs1001252946 1841 dbSNP
rs568360832 1861 dbSNP
rs1162133162 1869 dbSNP
rs1490972996 1872 dbSNP
rs546680476 1883 dbSNP
rs566376193 1887 dbSNP
rs1169226412 1899 dbSNP
rs1426249616 1900 dbSNP
rs1421088069 1903 dbSNP
rs1429398572 1905 dbSNP
rs1172799860 1906 dbSNP
rs1297863083 1909 dbSNP
rs1491049850 1909 dbSNP
rs199728346 1909 dbSNP
rs202065989 1909 dbSNP
rs369001534 1909 dbSNP
rs753999385 1909 dbSNP
rs77146558 1909 dbSNP
rs1388441758 1910 dbSNP
rs984190648 1912 dbSNP
rs1301773430 1914 dbSNP
rs1407150087 1917 dbSNP
rs1164239562 1918 dbSNP
rs1366538553 1919 dbSNP
rs1021613267 1920 dbSNP
rs1297942950 1920 dbSNP
rs909583766 1921 dbSNP
rs866553984 1922 dbSNP
rs76061761 1923 dbSNP
rs1479793161 1924 dbSNP
rs62171309 1925 dbSNP
rs1427122944 1927 dbSNP
rs942274506 1936 dbSNP
rs972311425 1943 dbSNP
rs919402396 1944 dbSNP
rs376517427 1952 dbSNP
rs1382479192 1957 dbSNP
rs949567102 1968 dbSNP
rs1339579404 1976 dbSNP
rs1227075580 1981 dbSNP
rs1046440146 1990 dbSNP
rs905276780 1993 dbSNP
rs1322828671 1999 dbSNP
rs1281961485 2001 dbSNP
rs1225836053 2002 dbSNP
rs1346662420 2004 dbSNP
rs1362239969 2013 dbSNP
rs1219986881 2026 dbSNP
rs1390019455 2027 dbSNP
rs1261444003 2029 dbSNP
rs964772610 2030 dbSNP
rs1246558674 2033 dbSNP
rs191248600 2034 dbSNP
rs1054186428 2040 dbSNP
rs1177934635 2043 dbSNP
rs781098251 2046 dbSNP
rs1009466721 2047 dbSNP
rs1179463573 2049 dbSNP
rs569154195 2068 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 129880.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgaGAAAAGUA----AUUACAUcugu 5'
             ||||||||    |  ||||    
Target 5' agaCUUUUCAUUUUGUUCUGUAcuaa 3'
 		8 - 33
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000295240.3 | 3UTR | ACAUGGGAGACUUUUCAUUUUGUUCUGUACUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
29 hsa-miR-3618 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378435 SOX4 SRY-box 4 2 2
MIRT459627 GABARAP GABA type A receptor-associated protein 2 2
MIRT471295 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471369 PDZD8 PDZ domain containing 8 2 2
MIRT504886 MRPL51 mitochondrial ribosomal protein L51 2 2
MIRT505938 RBM33 RNA binding motif protein 33 2 8
MIRT525461 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT526767 ZNF527 zinc finger protein 527 2 2
MIRT526990 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528669 PDE4DIP phosphodiesterase 4D interacting protein 2 6
MIRT538462 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT542899 HSBP1 heat shock factor binding protein 1 2 2
MIRT550274 AHI1 Abelson helper integration site 1 2 2
MIRT551674 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT551689 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT551755 TRIM42 tripartite motif containing 42 2 2
MIRT555769 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556241 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT556926 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT562638 ARID1A AT-rich interaction domain 1A 2 2
MIRT571348 RPL37 ribosomal protein L37 2 2
MIRT612818 KLHL3 kelch like family member 3 2 2
MIRT619329 TIPRL TOR signaling pathway regulator 2 4
MIRT653927 SERPINC1 serpin family C member 1 2 2
MIRT659150 DDHD1 DDHD domain containing 1 2 2
MIRT688334 FAM126B family with sequence similarity 126 member B 2 2
MIRT694760 FZD2 frizzled class receptor 2 2 2
MIRT700477 PUM1 pumilio RNA binding family member 1 2 2
MIRT702375 KLF10 Kruppel like factor 10 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3618 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-3618 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-3618 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-3618 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3618 Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3618 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-3618 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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