pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RAB3D   
Synonyms D2-2, GOV, RAB16, RAD3D
Description RAB3D, member RAS oncogene family
Transcript NM_004283   
Expression
Putative miRNA Targets on RAB3D
3'UTR of RAB3D
(miRNA target sites are highlighted)
>RAB3D|NM_004283|3'UTR
   1 AGATGGCCCCCAACCCCCCACCCACCCCTCTCCTGCCTCGGCAGGGACTGTGATCGAGGCGTGAGCCACAGTGGTTATCT
  81 CCAAGCTCAGGGCAATCCCTTCCCTCCTGTCAACTGCTCCCCGACTCCTGCATGGCTCATTCCTTCACAATGTCGCCGTG
 161 GCTGCCAGGTTCCTCAGGCAGCCCCGGTGGGAGGCTGCGGACCATGGGGACTCAGCTCTGCATGGCAGGCAGAGGCCCAG
 241 GGACACTGACGTGCATGAGCTTGCTGCTTTCCAGGGTGTGTTGAGGGTGGCCATGGGTGACACGTCCCACTCTTTCTGAT
 321 GGAGGGGCATCCGTGGTGCCTTCTAGCTTAGAACCATTTTCCAGGTCTCTTCTGGGTTGGGCAGGACTGATATTCCCAAG
 401 CTGGTGGAAGATGGTTCATCTTCCTCGCACAGTGTGGGTTCTTGGAGTTCATCCAGGGAAGGCGGCGCCTCTTTCTCAGG
 481 TCCTGCAGGCTGGTCTCTGAGCCTGCCCCCACGAACTTTCTGGATTCCAAGGTGGGATGGTGATCCCTTTGACCCCTGCA
 561 GACCCTCTACTTGCGAAAAGCAGCATTGAAGCAGCCTTTTCCCATTGTAGAAGGGACAGGGAGTCAGATCCCCTCAACCC
 641 CCCGGCTTCAGGGACCCCAGAAGTGCCTTCCAAGCTTCCCCCAAGATCCACATCACCCACGACCCTGCCACTGTTTTTGC
 721 TGTGTTCACCACATCTCTGATCCTGAAGTGAATTCTGGAACTATGGACCACATTAGACTGGGCAGAGATTCGCCCAACCC
 801 CTAGCACTCCGGCTCTGGGCTTTCGGCCAGAAGTTAATTAACCTCAGAGCCAGGAGCCTGGGGCTGGGGCCTCCCTCCCA
 881 GGCCCTGTTTAGCTGTTTAGCTGGTTGTGTTTTAAGCAAGTTCTTGCCCAATCATGCATCCTGCTAGAAAAGGAAATGAA
 961 GCAACGTTCCCAGCCACCGCAGGCAGTTGTCGGCGACTTTCTGATGTAAGCACCTGGGCTCCGACTTGAGGGGGGCCCTT
1041 CAAGACCCAATGTCCATTTCCCAATCCTTGTCATCGGCAGGGCCCAGGGATGTGACAATTTTTGCTAATGGAGGAGTCAC
1121 TTCTTTTTTTTTTTTTTTCTTTTTGAGATGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTCAC
1201 CACAGCCTCAAACTAGGGGTCACTTCTAAGGGATGCTGGGGGTTGGGCGGAAGGGGTGAGGAGGTAGGATTGAGTAACTT
1281 GCTGTCACTGCTTGTACTTTGTAGACAGCCTGAGAGTGGCAGGACCTTATGTGAATGGGGGGGATGGACTGTGATCAGTG
1361 CCGGGGAGTCTCTGAAGCTGGGGTCCCCACCTCCAGGGGCTTCTGCTCAGAGGTTACGTGTGCAGTTTGAAGATGTACAT
1441 CTTGACCTCCGGTTTAGAGGCACTTTCTGCCCATCAGATTCCAAACTCTAGGGGCGCAGCACCTTTTCTTTGCTCCCAAA
1521 CACCAACCAACACCCCTTCACAGGACCAGCACTGTTAGGATGGCTAAGTGGATGTTTTATGTTCCCACGTCCCTGACTCT
1601 GTTTCAGAGGTTGTGTCTGCTCTCCCAGCCCCTGAAGCCAAAATGACTTCCTGCAGCTTTCATGAGCTCAGCCTCTTCCC
1681 TGGGGTATGTGTGAGGGGGAAAGCCTGGTTCAAGTTTAGATTTATTTCTAGGGAGCCCTGGTTTCTTCATACCAGAGGCT
1761 ACCCTTAGAACTTTGGAGTGGGGTATCTTTTTTTCATTTGTTTTTTTGATACAGAGTCTCGCTCTATTGCCCAGGCTGGA
1841 GTGCGGTGGCACAATCTCAGCTTACTGCAACCTCCACCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAG
1921 CTGGCATTACAGGCACCTGCCACCACACCCGGCTAAATTTTGTATTTTTAGTAGAGAAGGGGTTTCACCATGTTGGTGAG
2001 GCTTGTCTCAAACTGACTTCAAGTGATCCACTTGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCACGC
2081 CCAGCCGAGGGTATCTTTTATACCAACAAATTAGATGACTGAGGTGTAATGGACAAATCCTATGCACAAAGTGAGGGTAT
2161 CTGAATATGTGGGCGGGAGTCAAAAATTTTTAGCTACTTTAACACTAAAGTCAAACTAAAGTAGCTTCAAAAAGACTTCT
2241 CAAGATGCAGTATGGCCTGCTGAGGTTTTTTTGTTTTTTTTTTTTTTAAGACAGAGAGTCGCTCGTCGCCCAGGCCGCAG
2321 TGCAGTAGCATGATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTAAGTAGC
2401 TGGGACTACAGGCACCTGCCACCACGCCCATCTAAGTTTTGCATTTTTAGTAGCGACGGTTTCACCTTGTTGGCCAGGCT
2481 GGTTTTGTTGGCCAATTGTCTCTAAACTGCTGTCAAAAAAAGGAATGGATCAGATTGTCTTGAATAGGGCAGAGCTAACC
2561 TGTAATCACCTGTGTGATGAGAAACAGCTTTGACTGCATTTTACTCCTGACCTGGCCTAAGCTTTCTGTTTACATAAGAT
2641 TTTTCAAGAATTCAACTTCAAGTAGCAGCCGAGAGAGCTGCCTCAGGATTCTCTCAAAAACTGGGAATAATATGGGAACA
2721 TTTGTTTCTTCTAAAAATAAGGCAAATGTTACATTGAATGATTTGGGGGGTGAGGTTTAATTGGAAATGGTCTCTGGGGA
2801 CTGAAAACTGATGTTTTTGCAGATTACCTCAGGGAAACGGAGGTTTGTTGAGTTTACAGACACATTAAACCAAAGGCCGT
2881 GGGAAAACCCCTCTCCAGCTCCAGGGGATTGGTCAGGACCACCCACTAACCAGTGCCTTCCTTCTTAACATTCACTTTTA
2961 GCAGCTTGTGTTTATTTTACATGGGCAGTTTTGATGGGAAATTGCCATGACCACAGGGGTTTGGAGTTCTGCTTTTTTTT
3041 TTTCTTCTTCTTTTTCGGGGGACTGGGGGACTCCTCCCAAGATCACATTTTAGCATCTTTCTCTCCTACTCCATTTAGAA
3121 AAATAAGTAACAGGTGAAATGTGGTCTCAGTGTTAACGGGATAATTCTGCTACCGGCTCCTCCCTGATGATTCTGAAATA
3201 CACTACTGAACGAGCTCTGGCTGGTCCTTTCTATCCTGGATGTGGTTCTTCTGTGTAGCAATTCCTTGATGTCCAGTTTG
3281 GAAAGATGTACTCTTCTCAACAAGAAAAACTTAAATCCGTCGTGCCCAAATATAGTTGTGCTTTTATTTCCAAAAAAAAA
3361 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  |:|||||||| 
Target 5' cgTCGCCCAGGCCGCAGTGCAGt 3'
2304 - 2326 165.00 -26.30
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
1160 - 1182 157.00 -19.40
3
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: |||||:| 
Target 5' tattgcCCAGGCTGGAGTGCGGt 3'
1825 - 1847 133.00 -15.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31537995 60 COSMIC
COSN31549814 79 COSMIC
COSN30162355 88 COSMIC
COSN19403565 185 COSMIC
COSN31531138 221 COSMIC
COSN5849284 313 COSMIC
COSN17075713 397 COSMIC
COSN22316974 450 COSMIC
COSN30543960 546 COSMIC
COSN26643310 707 COSMIC
COSN22650192 750 COSMIC
COSN30162340 755 COSMIC
COSN15663309 858 COSMIC
COSN22728890 965 COSMIC
COSN15668244 1051 COSMIC
COSN27571707 1342 COSMIC
COSN21822594 1604 COSMIC
COSN19268887 1622 COSMIC
COSN31961498 1974 COSMIC
COSN23796836 2273 COSMIC
COSN17870049 2277 COSMIC
COSN7353769 2469 COSMIC
COSN1760312 2538 COSMIC
COSN29024689 2572 COSMIC
COSN17038343 2573 COSMIC
COSN30306347 3040 COSMIC
COSN9347561 3059 COSMIC
COSN17360189 3069 COSMIC
COSN14888751 3111 COSMIC
rs148273964 2143 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1430440473 2 dbSNP
rs766135488 5 dbSNP
rs1248681604 6 dbSNP
rs923244149 8 dbSNP
rs1477668662 9 dbSNP
rs1251015342 10 dbSNP
rs1184540643 12 dbSNP
rs1394375560 13 dbSNP
rs773112600 15 dbSNP
rs1215375254 16 dbSNP
rs1468730294 17 dbSNP
rs1257096753 18 dbSNP
rs769901224 19 dbSNP
rs1170240577 20 dbSNP
rs1483427132 20 dbSNP
rs762163610 21 dbSNP
rs912808126 24 dbSNP
rs545455413 27 dbSNP
rs943420005 32 dbSNP
rs200753789 39 dbSNP
rs1306233071 40 dbSNP
rs1442165326 42 dbSNP
rs1400016396 43 dbSNP
rs747478536 45 dbSNP
rs1329642044 46 dbSNP
rs557052434 49 dbSNP
rs1355279640 50 dbSNP
rs904427619 55 dbSNP
rs1021976766 56 dbSNP
rs112427764 60 dbSNP
rs894150307 61 dbSNP
rs780133564 63 dbSNP
rs567380223 70 dbSNP
rs1213123460 77 dbSNP
rs938426842 82 dbSNP
rs542083310 86 dbSNP
rs1251285772 88 dbSNP
rs1467082138 90 dbSNP
rs886898714 97 dbSNP
rs1047868283 99 dbSNP
rs1373588702 108 dbSNP
rs1052676379 113 dbSNP
rs1165981992 117 dbSNP
rs971317669 120 dbSNP
rs574679234 122 dbSNP
rs1023937898 123 dbSNP
rs1324627170 123 dbSNP
rs1012585221 141 dbSNP
rs576246668 145 dbSNP
rs1017080367 149 dbSNP
rs1286379218 154 dbSNP
rs111588110 155 dbSNP
rs1005324316 157 dbSNP
rs887917126 158 dbSNP
rs1047901905 169 dbSNP
rs929528868 176 dbSNP
rs1262304897 178 dbSNP
rs943344908 182 dbSNP
rs1259432190 183 dbSNP
rs764372753 185 dbSNP
rs987501174 186 dbSNP
rs556429898 195 dbSNP
rs954772399 196 dbSNP
rs1031782347 198 dbSNP
rs977255164 199 dbSNP
rs1336556541 224 dbSNP
rs936118477 225 dbSNP
rs968976706 228 dbSNP
rs924412010 229 dbSNP
rs1280933070 231 dbSNP
rs172757 232 dbSNP
rs1331526491 233 dbSNP
rs1345534704 233 dbSNP
rs1269346633 234 dbSNP
rs1260276655 236 dbSNP
rs971258979 240 dbSNP
rs1203239897 245 dbSNP
rs1013259988 250 dbSNP
rs1485846704 251 dbSNP
rs991432774 257 dbSNP
rs1254916681 263 dbSNP
rs1420559444 265 dbSNP
rs1216778531 266 dbSNP
rs1342246619 268 dbSNP
rs1298316456 272 dbSNP
rs894431517 275 dbSNP
rs1035316833 276 dbSNP
rs958339845 287 dbSNP
rs1016617202 290 dbSNP
rs1005682157 303 dbSNP
rs1311494249 303 dbSNP
rs951168128 304 dbSNP
rs1414673715 312 dbSNP
rs1306563150 321 dbSNP
rs1333994185 326 dbSNP
rs1002518076 333 dbSNP
rs993625542 339 dbSNP
rs7247089 344 dbSNP
rs1424914540 364 dbSNP
rs1278000451 366 dbSNP
rs1481410103 367 dbSNP
rs1195955253 372 dbSNP
rs1187330819 376 dbSNP
rs1040593312 380 dbSNP
rs1047264188 386 dbSNP
rs1396177973 396 dbSNP
rs1454267372 406 dbSNP
rs1194206302 409 dbSNP
rs1007789279 413 dbSNP
rs1347320959 419 dbSNP
rs889092877 421 dbSNP
rs1211135180 426 dbSNP
rs558157374 427 dbSNP
rs539406731 431 dbSNP
rs367763257 433 dbSNP
rs1256813195 437 dbSNP
rs1462824728 446 dbSNP
rs1054474189 448 dbSNP
rs1394640142 463 dbSNP
rs770245636 464 dbSNP
rs1272055066 465 dbSNP
rs146615622 466 dbSNP
rs1319922162 467 dbSNP
rs924716384 470 dbSNP
rs1371627675 489 dbSNP
rs1233566851 490 dbSNP
rs1041858435 493 dbSNP
rs1308980603 496 dbSNP
rs1037920276 498 dbSNP
rs943608723 499 dbSNP
rs1215002877 500 dbSNP
rs910843990 504 dbSNP
rs550652906 506 dbSNP
rs374201619 509 dbSNP
rs1192240433 512 dbSNP
rs746371380 513 dbSNP
rs1429440422 536 dbSNP
rs1285414109 545 dbSNP
rs1170233231 553 dbSNP
rs776943814 555 dbSNP
rs933322822 562 dbSNP
rs529491223 564 dbSNP
rs770431390 571 dbSNP
rs191546333 574 dbSNP
rs79333286 575 dbSNP
rs1393747167 578 dbSNP
rs968549375 579 dbSNP
rs748145223 580 dbSNP
rs1329766055 581 dbSNP
rs1467447976 582 dbSNP
rs1291666973 586 dbSNP
rs1401467434 587 dbSNP
rs528803494 592 dbSNP
rs1382543947 595 dbSNP
rs1294648704 596 dbSNP
rs1315676568 606 dbSNP
rs958661167 609 dbSNP
rs1164916795 613 dbSNP
rs1333460127 615 dbSNP
rs914382496 619 dbSNP
rs909502816 623 dbSNP
rs1486505287 624 dbSNP
rs112154058 630 dbSNP
rs1476395807 637 dbSNP
rs951162732 641 dbSNP
rs185900988 643 dbSNP
rs1035600817 644 dbSNP
rs1161429261 644 dbSNP
rs1176561809 655 dbSNP
rs1346869783 656 dbSNP
rs1458967974 658 dbSNP
rs1454307226 661 dbSNP
rs535995444 678 dbSNP
rs563418329 681 dbSNP
rs1416412885 683 dbSNP
rs1220789765 685 dbSNP
rs1025352530 698 dbSNP
rs181049822 700 dbSNP
rs925472901 702 dbSNP
rs898276466 704 dbSNP
rs1038271734 714 dbSNP
rs541921816 716 dbSNP
rs574716481 718 dbSNP
rs1318046906 720 dbSNP
rs553222406 722 dbSNP
rs1259501219 724 dbSNP
rs1486831873 727 dbSNP
rs1189136635 729 dbSNP
rs1228352780 733 dbSNP
rs1257041024 745 dbSNP
rs116230310 748 dbSNP
rs747931715 765 dbSNP
rs1179012265 772 dbSNP
rs1408725246 774 dbSNP
rs1400206436 776 dbSNP
rs1158222512 780 dbSNP
rs1358580687 782 dbSNP
rs1000192517 792 dbSNP
rs1313309664 806 dbSNP
rs1306704532 810 dbSNP
rs144388694 811 dbSNP
rs1378164857 817 dbSNP
rs1041804157 820 dbSNP
rs924616858 824 dbSNP
rs1041757155 825 dbSNP
rs1350733105 842 dbSNP
rs754850166 842 dbSNP
rs917058007 844 dbSNP
rs1280140571 846 dbSNP
rs1400135078 850 dbSNP
rs1378533543 851 dbSNP
rs947455636 855 dbSNP
rs914686192 856 dbSNP
rs1440515571 864 dbSNP
rs370593576 869 dbSNP
rs111306182 871 dbSNP
rs374685933 871 dbSNP
rs1055640680 880 dbSNP
rs1175594530 881 dbSNP
rs991719252 882 dbSNP
rs1487482491 887 dbSNP
rs1174021789 890 dbSNP
rs750623482 893 dbSNP
rs1248318859 899 dbSNP
rs139489541 904 dbSNP
rs1412563965 904 dbSNP
rs377503873 904 dbSNP
rs1330418027 908 dbSNP
rs1311244538 911 dbSNP
rs573517716 916 dbSNP
rs1221678863 921 dbSNP
rs958546602 926 dbSNP
rs373667726 931 dbSNP
rs1373810969 938 dbSNP
rs370659520 940 dbSNP
rs1303328779 950 dbSNP
rs1343252409 953 dbSNP
rs981326035 955 dbSNP
rs951017432 957 dbSNP
rs1437509347 963 dbSNP
rs139782948 965 dbSNP
rs1353914312 966 dbSNP
rs191030620 971 dbSNP
rs986266157 974 dbSNP
rs953706797 978 dbSNP
rs778768031 979 dbSNP
rs144813075 988 dbSNP
rs1419763997 991 dbSNP
rs1409070304 992 dbSNP
rs1167913761 994 dbSNP
rs1000878478 995 dbSNP
rs1018050574 998 dbSNP
rs575231301 1005 dbSNP
rs1358743933 1009 dbSNP
rs1271193623 1010 dbSNP
rs557062308 1019 dbSNP
rs1007710096 1022 dbSNP
rs1216956706 1023 dbSNP
rs754931809 1024 dbSNP
rs1420558412 1025 dbSNP
rs1335498232 1026 dbSNP
rs1030556827 1027 dbSNP
rs1213183302 1032 dbSNP
rs367946682 1033 dbSNP
rs1394661274 1036 dbSNP
rs997762148 1037 dbSNP
rs1449844246 1039 dbSNP
rs903474495 1046 dbSNP
rs1175096883 1049 dbSNP
rs551418785 1050 dbSNP
rs186292971 1059 dbSNP
rs1190992349 1064 dbSNP
rs1427006432 1065 dbSNP
rs1419611133 1067 dbSNP
rs947440271 1070 dbSNP
rs893182867 1073 dbSNP
rs73922643 1075 dbSNP
rs1487909373 1076 dbSNP
rs1163645279 1082 dbSNP
rs1389182780 1085 dbSNP
rs888306888 1088 dbSNP
rs1218120767 1091 dbSNP
rs1326153738 1099 dbSNP
rs1398568312 1113 dbSNP
rs1488418173 1119 dbSNP
rs979580124 1123 dbSNP
rs1356385589 1126 dbSNP
rs1232731126 1128 dbSNP
rs1254995557 1131 dbSNP
rs1263818653 1133 dbSNP
rs1048290147 1139 dbSNP
rs561740577 1139 dbSNP
rs969501557 1139 dbSNP
rs1191283733 1145 dbSNP
rs1259150465 1150 dbSNP
rs929902336 1151 dbSNP
rs1314374403 1152 dbSNP
rs928478994 1165 dbSNP
rs976395533 1178 dbSNP
rs766356327 1192 dbSNP
rs1159607112 1202 dbSNP
rs929890511 1204 dbSNP
rs918532322 1216 dbSNP
rs546792496 1222 dbSNP
rs962416445 1230 dbSNP
rs1018402409 1238 dbSNP
rs1310853205 1243 dbSNP
rs149352488 1248 dbSNP
rs1239897610 1249 dbSNP
rs955142898 1253 dbSNP
rs1467747424 1256 dbSNP
rs111292801 1270 dbSNP
rs751641204 1278 dbSNP
rs903422823 1284 dbSNP
rs1020549576 1288 dbSNP
rs1485876934 1290 dbSNP
rs1011970173 1297 dbSNP
rs1439006124 1300 dbSNP
rs967629133 1307 dbSNP
rs753623134 1322 dbSNP
rs916661711 1324 dbSNP
rs1438455132 1329 dbSNP
rs893137760 1330 dbSNP
rs1396000609 1332 dbSNP
rs1055770160 1337 dbSNP
rs1301268561 1338 dbSNP
rs552590574 1339 dbSNP
rs1014260568 1344 dbSNP
rs1328340780 1344 dbSNP
rs371075512 1344 dbSNP
rs992168250 1344 dbSNP
rs907337015 1345 dbSNP
rs1305549032 1349 dbSNP
rs1348262647 1352 dbSNP
rs1232303424 1354 dbSNP
rs1045523343 1357 dbSNP
rs530552958 1359 dbSNP
rs1481441729 1361 dbSNP
rs562362957 1362 dbSNP
rs563254979 1363 dbSNP
rs542571842 1365 dbSNP
rs114526539 1366 dbSNP
rs375844342 1369 dbSNP
rs1174456731 1382 dbSNP
rs929876596 1383 dbSNP
rs1462747754 1391 dbSNP
rs1170237734 1400 dbSNP
rs1398126423 1406 dbSNP
rs1443221517 1409 dbSNP
rs1198358514 1417 dbSNP
rs910883202 1418 dbSNP
rs1385992152 1425 dbSNP
rs1061327 1427 dbSNP
rs1280584222 1439 dbSNP
rs150646450 1442 dbSNP
rs1299002719 1444 dbSNP
rs985163411 1447 dbSNP
rs573521011 1450 dbSNP
rs541232650 1451 dbSNP
rs1029448632 1466 dbSNP
rs910910137 1474 dbSNP
rs1398028816 1476 dbSNP
rs1488472541 1477 dbSNP
rs1189835940 1481 dbSNP
rs1264218425 1482 dbSNP
rs12980573 1489 dbSNP
rs967592108 1490 dbSNP
rs1421796114 1494 dbSNP
rs1463053503 1495 dbSNP
rs1020915431 1496 dbSNP
rs1397834452 1502 dbSNP
rs1172819627 1508 dbSNP
rs765646046 1512 dbSNP
rs1367430817 1526 dbSNP
rs1184713616 1536 dbSNP
rs957890272 1546 dbSNP
rs1425215885 1549 dbSNP
rs979339756 1550 dbSNP
rs1277138444 1552 dbSNP
rs1034307939 1557 dbSNP
rs1234578572 1558 dbSNP
rs77792518 1561 dbSNP
rs76724383 1563 dbSNP
rs77766316 1564 dbSNP
rs399878 1569 dbSNP
rs1320595614 1571 dbSNP
rs181952691 1572 dbSNP
rs907283168 1582 dbSNP
rs1486372943 1585 dbSNP
rs1260391715 1586 dbSNP
rs540321807 1588 dbSNP
rs1199879777 1589 dbSNP
rs994382088 1596 dbSNP
rs539923627 1601 dbSNP
rs1034784793 1606 dbSNP
rs896995286 1613 dbSNP
rs1038645730 1615 dbSNP
rs1162539983 1620 dbSNP
rs1263790328 1626 dbSNP
rs1001598219 1637 dbSNP
rs1420053565 1654 dbSNP
rs941285940 1678 dbSNP
rs1026782146 1680 dbSNP
rs994405091 1682 dbSNP
rs1247001268 1684 dbSNP
rs572712071 1703 dbSNP
rs911165061 1711 dbSNP
rs1040921359 1741 dbSNP
rs575269627 1751 dbSNP
rs767048282 1758 dbSNP
rs556958215 1766 dbSNP
rs535410612 1779 dbSNP
rs933659589 1783 dbSNP
rs1444839180 1793 dbSNP
rs1237142151 1795 dbSNP
rs1482295543 1802 dbSNP
rs922325288 1809 dbSNP
rs777153695 1810 dbSNP
rs1410050540 1814 dbSNP
rs1440310338 1818 dbSNP
rs771375377 1820 dbSNP
rs375725587 1821 dbSNP
rs1445140668 1822 dbSNP
rs143927936 1826 dbSNP
rs747826194 1842 dbSNP
rs1307734795 1843 dbSNP
rs1160950605 1844 dbSNP
rs553181045 1845 dbSNP
rs778375036 1846 dbSNP
rs1310718026 1848 dbSNP
rs1157746685 1851 dbSNP
rs75520400 1854 dbSNP
rs28602391 1863 dbSNP
rs980512674 1865 dbSNP
rs1177879656 1876 dbSNP
rs1236314509 1877 dbSNP
rs1455393898 1884 dbSNP
rs146994440 1892 dbSNP
rs1024310467 1893 dbSNP
rs1400325791 1896 dbSNP
rs1445430529 1906 dbSNP
rs994235581 1908 dbSNP
rs994255882 1914 dbSNP
rs749000711 1915 dbSNP
rs961170772 1918 dbSNP
rs537357657 1922 dbSNP
rs1357230444 1925 dbSNP
rs1285364349 1927 dbSNP
rs1238304158 1930 dbSNP
rs1356057664 1944 dbSNP
rs1216486089 1946 dbSNP
rs142803808 1950 dbSNP
rs548213618 1951 dbSNP
rs756099105 1957 dbSNP
rs1008064153 1962 dbSNP
rs1256054264 1964 dbSNP
rs889681202 1988 dbSNP
rs1199302074 1989 dbSNP
rs529676294 1995 dbSNP
rs1476926896 1997 dbSNP
rs1049702726 2002 dbSNP
rs559086019 2003 dbSNP
rs1464624464 2004 dbSNP
rs1365703348 2010 dbSNP
rs1000930258 2013 dbSNP
rs751731166 2020 dbSNP
rs766778347 2023 dbSNP
rs1323490317 2025 dbSNP
rs1417517325 2027 dbSNP
rs903549593 2038 dbSNP
rs1049693647 2039 dbSNP
rs1216859441 2042 dbSNP
rs933606664 2045 dbSNP
rs1159524322 2050 dbSNP
rs1295272900 2055 dbSNP
rs1357148291 2066 dbSNP
rs559532321 2067 dbSNP
rs891943117 2078 dbSNP
rs1042478222 2079 dbSNP
rs76792451 2086 dbSNP
rs938876216 2087 dbSNP
rs914996712 2091 dbSNP
rs1477326310 2092 dbSNP
rs990321413 2093 dbSNP
rs1369629519 2101 dbSNP
rs957547833 2103 dbSNP
rs919955972 2107 dbSNP
rs79316015 2114 dbSNP
rs961448674 2121 dbSNP
rs980323571 2123 dbSNP
rs1019365062 2126 dbSNP
rs868153881 2140 dbSNP
rs1024307846 2142 dbSNP
rs148273964 2143 dbSNP
rs383547 2144 dbSNP
rs1244196867 2146 dbSNP
rs1283499484 2149 dbSNP
rs1344119369 2149 dbSNP
rs1354227933 2157 dbSNP
rs1017449852 2174 dbSNP
rs386670 2175 dbSNP
rs1235388846 2176 dbSNP
rs1286559241 2179 dbSNP
rs1346026566 2192 dbSNP
rs371406412 2194 dbSNP
rs903495975 2204 dbSNP
rs560807347 2206 dbSNP
rs138837051 2209 dbSNP
rs57212914 2209 dbSNP
rs758776687 2209 dbSNP
rs1318641421 2222 dbSNP
rs1442461424 2223 dbSNP
rs749057912 2224 dbSNP
rs1186288198 2229 dbSNP
rs1367222313 2230 dbSNP
rs1413528919 2235 dbSNP
rs896240145 2236 dbSNP
rs143163649 2249 dbSNP
rs938842254 2257 dbSNP
rs998092749 2260 dbSNP
rs1481065735 2267 dbSNP
rs868271452 2273 dbSNP
rs906060763 2273 dbSNP
rs1332344738 2275 dbSNP
rs574486831 2276 dbSNP
rs931595211 2277 dbSNP
rs78152585 2278 dbSNP
rs945064953 2279 dbSNP
rs893526804 2280 dbSNP
rs181198497 2281 dbSNP
rs986874383 2281 dbSNP
rs1345350052 2283 dbSNP
rs1199382993 2287 dbSNP
rs1238135305 2288 dbSNP
rs1436937398 2288 dbSNP
rs1444228669 2288 dbSNP
rs57286334 2288 dbSNP
rs577230932 2289 dbSNP
rs1438188136 2294 dbSNP
rs1209731088 2296 dbSNP
rs953993727 2297 dbSNP
rs1465792016 2298 dbSNP
rs1028176746 2299 dbSNP
rs1402486948 2299 dbSNP
rs558911103 2300 dbSNP
rs1276282092 2301 dbSNP
rs968002343 2304 dbSNP
rs1444292004 2305 dbSNP
rs1020594322 2307 dbSNP
rs567316461 2308 dbSNP
rs927459784 2310 dbSNP
rs376248962 2316 dbSNP
rs553887429 2317 dbSNP
rs445026 2318 dbSNP
rs1193285148 2323 dbSNP
rs972732883 2325 dbSNP
rs1139116 2326 dbSNP
rs1270252788 2336 dbSNP
rs1139117 2338 dbSNP
rs961695822 2340 dbSNP
rs1478174618 2341 dbSNP
rs1016981883 2342 dbSNP
rs1139118 2349 dbSNP
rs1446870432 2353 dbSNP
rs1139119 2354 dbSNP
rs984214321 2356 dbSNP
rs954142690 2361 dbSNP
rs369405103 2362 dbSNP
rs998040262 2371 dbSNP
rs1139120 2372 dbSNP
rs1169246651 2376 dbSNP
rs1467614097 2392 dbSNP
rs901073842 2393 dbSNP
rs898746238 2403 dbSNP
rs1037277920 2405 dbSNP
rs769695455 2408 dbSNP
rs868731879 2415 dbSNP
rs1208475812 2417 dbSNP
rs1184426848 2421 dbSNP
rs411834 2425 dbSNP
rs761164525 2426 dbSNP
rs1421497730 2429 dbSNP
rs445169 2431 dbSNP
rs1319854796 2443 dbSNP
rs531519974 2449 dbSNP
rs761165678 2453 dbSNP
rs554609396 2455 dbSNP
rs950233639 2456 dbSNP
rs189977552 2457 dbSNP
rs973399779 2458 dbSNP
rs1359200376 2459 dbSNP
rs1285650853 2477 dbSNP
rs1229574525 2478 dbSNP
rs1034696106 2490 dbSNP
rs1243063468 2495 dbSNP
rs940004351 2506 dbSNP
rs1002326822 2507 dbSNP
rs1376676870 2522 dbSNP
rs1488828431 2524 dbSNP
rs1216102314 2525 dbSNP
rs1261343897 2528 dbSNP
rs1182568687 2537 dbSNP
rs909867733 2545 dbSNP
rs1329698684 2546 dbSNP
rs1256759649 2550 dbSNP
rs1449678389 2550 dbSNP
rs111522333 2558 dbSNP
rs954090682 2561 dbSNP
rs921374959 2565 dbSNP
rs1423246577 2569 dbSNP
rs1161604399 2573 dbSNP
rs1381876641 2576 dbSNP
rs1420107174 2577 dbSNP
rs1157641073 2580 dbSNP
rs412293 2585 dbSNP
rs749158145 2593 dbSNP
rs965606084 2594 dbSNP
rs370417656 2603 dbSNP
rs571273145 2607 dbSNP
rs1312124581 2617 dbSNP
rs1164496810 2627 dbSNP
rs1004438286 2628 dbSNP
rs779965877 2631 dbSNP
rs1314223621 2632 dbSNP
rs1439297938 2634 dbSNP
rs1379484354 2640 dbSNP
rs891098674 2645 dbSNP
rs769920808 2647 dbSNP
rs1482326709 2650 dbSNP
rs779073063 2656 dbSNP
rs1481575892 2662 dbSNP
rs958021815 2670 dbSNP
rs377363259 2671 dbSNP
rs531392073 2672 dbSNP
rs1051112062 2676 dbSNP
rs749866667 2681 dbSNP
rs1415756038 2682 dbSNP
rs1176350408 2687 dbSNP
rs560894446 2689 dbSNP
rs932690734 2705 dbSNP
rs1467801409 2712 dbSNP
rs542489923 2713 dbSNP
rs549297264 2715 dbSNP
rs1378358183 2716 dbSNP
rs1044233584 2721 dbSNP
rs1278215616 2724 dbSNP
rs1293280556 2727 dbSNP
rs1246319433 2733 dbSNP
rs1278216691 2737 dbSNP
rs530068722 2748 dbSNP
rs946520132 2749 dbSNP
rs913761929 2752 dbSNP
rs1307570611 2756 dbSNP
rs1458207774 2762 dbSNP
rs1242694970 2771 dbSNP
rs559501070 2771 dbSNP
rs988027324 2771 dbSNP
rs1191371869 2772 dbSNP
rs1374494474 2775 dbSNP
rs541384739 2781 dbSNP
rs1479158405 2783 dbSNP
rs1172268451 2796 dbSNP
rs1401659302 2797 dbSNP
rs1465503128 2798 dbSNP
rs1293528119 2802 dbSNP
rs1434906157 2809 dbSNP
rs538004249 2810 dbSNP
rs960619771 2811 dbSNP
rs1274460961 2813 dbSNP
rs1303789956 2814 dbSNP
rs927574787 2814 dbSNP
rs1278847605 2825 dbSNP
rs72992911 2838 dbSNP
rs144879292 2839 dbSNP
rs1453083961 2849 dbSNP
rs1222093893 2850 dbSNP
rs1267716730 2857 dbSNP
rs1046152211 2858 dbSNP
rs973582790 2863 dbSNP
rs1014339594 2864 dbSNP
rs1423654551 2872 dbSNP
rs183589453 2874 dbSNP
rs145220050 2878 dbSNP
rs1037237626 2879 dbSNP
rs191458814 2880 dbSNP
rs1190586875 2890 dbSNP
rs1402013159 2895 dbSNP
rs1299054074 2896 dbSNP
rs1339880248 2897 dbSNP
rs375088390 2902 dbSNP
rs1030369049 2903 dbSNP
rs396384 2905 dbSNP
rs1270438674 2907 dbSNP
rs910157748 2913 dbSNP
rs1043800009 2918 dbSNP
rs186659078 2919 dbSNP
rs932650132 2920 dbSNP
rs1283513000 2931 dbSNP
rs184541883 2939 dbSNP
rs1263501747 2944 dbSNP
rs1445890967 2947 dbSNP
rs1317942930 2950 dbSNP
rs976834966 2951 dbSNP
rs1190467438 2955 dbSNP
rs1239715344 2965 dbSNP
rs1163517485 2968 dbSNP
rs1473372675 2968 dbSNP
rs1052269883 2981 dbSNP
rs939205609 2982 dbSNP
rs1300995147 2985 dbSNP
rs1159442076 2993 dbSNP
rs927895740 2995 dbSNP
rs1336318770 2998 dbSNP
rs1341149249 3004 dbSNP
rs1448595116 3005 dbSNP
rs1314325462 3008 dbSNP
rs981123784 3019 dbSNP
rs965206577 3025 dbSNP
rs947725921 3032 dbSNP
rs538588304 3041 dbSNP
rs973146761 3042 dbSNP
rs571295698 3043 dbSNP
rs961779058 3043 dbSNP
rs1015676895 3044 dbSNP
rs111894199 3044 dbSNP
rs1179718969 3044 dbSNP
rs761760391 3044 dbSNP
rs1363434242 3046 dbSNP
rs1451813996 3047 dbSNP
rs1174551036 3050 dbSNP
rs1414012477 3053 dbSNP
rs201877596 3053 dbSNP
rs1335970850 3056 dbSNP
rs370801537 3056 dbSNP
rs958183087 3057 dbSNP
rs955572501 3061 dbSNP
rs1334960211 3064 dbSNP
rs1236366859 3067 dbSNP
rs1032234141 3069 dbSNP
rs112072519 3070 dbSNP
rs140308799 3097 dbSNP
rs1001801559 3099 dbSNP
rs565353351 3100 dbSNP
rs1022724909 3107 dbSNP
rs1459530559 3112 dbSNP
rs7417 3124 dbSNP
rs1417729561 3130 dbSNP
rs892550590 3139 dbSNP
rs1013746665 3142 dbSNP
rs1174446254 3150 dbSNP
rs897615373 3151 dbSNP
rs1200044055 3152 dbSNP
rs1467062790 3157 dbSNP
rs1037586487 3158 dbSNP
rs1477248163 3163 dbSNP
rs1260370144 3169 dbSNP
rs1004413095 3171 dbSNP
rs939151619 3172 dbSNP
rs1389500048 3173 dbSNP
rs1325085603 3174 dbSNP
rs3087847 3177 dbSNP
rs1044962915 3180 dbSNP
rs1044000 3193 dbSNP
rs1255807039 3201 dbSNP
rs1048693334 3202 dbSNP
rs879913110 3203 dbSNP
rs760974584 3211 dbSNP
rs921272294 3212 dbSNP
rs1212060318 3219 dbSNP
rs920240788 3221 dbSNP
rs1490227689 3226 dbSNP
rs750936496 3227 dbSNP
rs1425802582 3233 dbSNP
rs548730689 3235 dbSNP
rs1171021132 3236 dbSNP
rs1372481138 3251 dbSNP
rs1218554554 3256 dbSNP
rs1338568761 3257 dbSNP
rs907625067 3261 dbSNP
rs556860818 3275 dbSNP
rs1365967600 3282 dbSNP
rs1383012107 3284 dbSNP
rs1378668445 3288 dbSNP
rs1302049790 3292 dbSNP
rs1464407557 3293 dbSNP
rs955550305 3293 dbSNP
rs1382339913 3308 dbSNP
rs534778746 3318 dbSNP
rs560350915 3319 dbSNP
rs1266341115 3320 dbSNP
rs936536866 3321 dbSNP
rs1420869684 3322 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9545.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' --UCACCCAGGCUGGAGUGCAGu 3'
1 - 21
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_004283 | 3UTR | UUUUUUUUUUUAAGACAGAGAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_004283 | 3UTR | GAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_004283 | 3UTR | AAGACAGAGAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_004283 | 3UTR | UUUUUAAGACAGAGAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_004283 | 3UTR | CAGAGAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_004283 | 3UTR | UUUUUUUUUUUAAGACAGAGAGUCGCUCGUCGCCCAGGCCGCAGUGCAGUAGCAUGAUCUCAGCUCACUGCAACCUCCACCUCCCGGGUUCAAGCGAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000222120.3 | 3UTR | UCACCCAGGCUGGAGUGCAGUGGUGCAAUCAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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