pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-5p
Sequence 6| UUGUGUGAGUACAGAGAGCAUC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs763248242 2 dbSNP
rs186621048 3 dbSNP
rs1455267770 12 dbSNP
rs1170462641 19 dbSNP
rs1435853423 22 dbSNP
Putative Targets

Gene Information
Gene Symbol SNAP29   
Synonyms CEDNIK, SNAP-29
Description synaptosome associated protein 29
Transcript NM_004782   
Expression
Putative miRNA Targets on SNAP29
3'UTR of SNAP29
(miRNA target sites are highlighted)
>SNAP29|NM_004782|3'UTR
   1 AGACAGACGGATTTCCACTCTATTGTGATGAAAAGATTTGAAAGATCTTTTTTTGAACTTCCAAGAAATTTCATTTACTA
  81 TTTTAGTATGTAAATTAATGTGTGTTTGCAAATGTTATAATAGAGTAGGTCTTAAGACATTTTTGCTGTTATAAGGAAGT
 161 GTTTGTCCCACATTTTCCTAGGGTTAACACCTCACCAAGTTCTTCCAGCAAAATGCTTATTAGAGTTTTTGTCTGAGCAC
 241 AGTAGCCTGGCCCTGCATATCTTGGGCGTTTGATTACCATGCTGGAATAAGAAGAGTTGCATTTCTCATTTTAATGAGCA
 321 TATGGAAAGATGGGAACAGAATTTCAGTCTTGCAGCCATGAGCCTCTATTTCTCATTCCTAAGCCTTACCATGAGTCAGA
 401 GTGTTAAGGGGGCCTGTGAACCAGTCGTTTGGTGGAGGAGGGTCCTTCCCACACCTTTGTTTAGGAGTCATCATTCACAC
 481 ACACACACACACACACACACACACACACACACACACACACTCTCTGAGCACATTATCTGTGATTCTTTCATCCTCCCAGA
 561 AAGGATCAGTGTTAGAATGGGAAATAGAGTGTGCCATCTTGCTCTTTTGTTGGCAGATGTCCCCGCTTCCCTCCAGCCCC
 641 CCATCCTTGGCATGTATATTAGTAGGAGGGCTTCACACCAGCACTGCTCACTGCGACTCCTGGAAATGTGTGGGGAATTG
 721 GGTGAGCCCCTCTTCCCCACGTGCTCCCATCTGTAACTCTCCATCTGTGATTTGCAACAGGTCTTCCACTGGCTCGAGGC
 801 TGCGAGGCTGACCGACAGGGGCGCCCAATAGAGTTTGTGGGAATGGAGTATTGCACAGATGCAGCTGCACAATGGTCTTC
 881 CTCCACCCCTCTGGGAATCACCATTAGGCAGGCCTCAGTAGGGCAAAATGTTTATTTGGTACCGGGGGTCTCCTGACCTG
 961 TCTAGCATTCCCACCCACTCTTCTGCACTTCTTGCAAGGTAACTTGAATCATCACTTATTTCTCTGCCACCTGGTTTTAG
1041 GACTGGCACTCTATAAATGACGCTGACTTTGTATAGAAGGATTTTGCTAAGGGGGCAAAAAGCCCAGATACCATTTTAAC
1121 TGGCCCAGTTCATTTTCTCCTTTCATTTTACAAAAGAAATCATGCAGAAGCATCAATTAAAACTGATTTATTTATGTTGG
1201 TACATCCAACAAAATAGTTGGAGCCACAAGGCCCTTGTCTTTTTAAAAAAACAAAATATTTTGAAGATGGTGAAAGTGAC
1281 TGATTTTAATAATGAGATAGGTCACTTAAAATAACAGTGCCTTTGACCTTAAAACATGGCACTGGCCCATGTGACCTTTG
1361 CCATTTCCCAGTACTTCCCTTTACAGTCTGCAGCCTATAAACAGTGGTGTCTCAAAGCAAAGGAAACCTCCACAAGTGCT
1441 GCAACAGTGCATTAGTTTTTATGTAGCAATTTGTTTATAAAAATTCCCATCCCATAATGCATGACCTTCCTAAAAATATC
1521 CACAGCCTCCATAGGCAAGGTGAGCTTTCTGTGCTACCCACTTGTTAGATTCCAGCCACCTCAGGGATTCTGATCCATGT
1601 CATTAACGACCATCCCAGGGTGTGAGGGCCTGATTAAAGCTTATCGAACTAGACATTTGTTTATTAGATGAGCTCGGCAT
1681 TATTATTTTCTCAATAACTGGTAGAAGGGAAATTTTAAACATAACACTCAACCCAAACAAAACTACTTCGTGAGGCTTTC
1761 AGCAAAAAGGCTGCTTAAAAGCATGAACCCGGGATGCAGAGCAGCTTTTGTGCACGGTTCCACTTACTGTAATTGTTTCT
1841 GGTTCTTTCCTCTAACACCTTCCATGTATGTCAACTTTTTATCACCGTCAGGCATAGACTCGTGGAGATTAGTCATTATA
1921 GCTCAGACCTAAGCTAATTATTTAAAATAAATACATGTAAAGGCCACTGCCACATTCTCAGCAGACTTCCACTTGCCTAA
2001 TGAGATTAGTGATTCAACTGACTTGAAGCACAGTAACATCTTATTTTATGCACATTCCCTGTCTTTTGCTGGACTGATGA
2081 AGCCAGTCACCCGCCCTTCTCTGTTTTTTGGTTTTTTTTTTCTTAACCCCAGGTATATGGAAGGGGAGTTGCCTTCACTT
2161 TTCTGGAAATTTGTCTTCGTCTGACATATTAGAGGGCCTCGTTTTGTCCTGTTCTTGTTCAGACCCTCTCGTTCTACGTC
2241 CTGTGCTGAGGGGACTGTCCGTAAGCTACAGGACAGCGAGCTGGTCCTTTCTGCCACTTCTTCCCCACTCCCATGCCCAG
2321 GAAGGCCTGGTTGCTGATGCTACTTTATAAATGAGTTGCTTGCATTTTCACAGAGAATGAAGGAAGACGTAACATGGCTC
2401 CAGAAACTTTTCACATGATGATTGGGATCGACAAAAAAATGCTACCCTCTAGACTAGACACATTTCATGGAGACAAGCAA
2481 AATGGTGCCAGGGCTGGGCTGACTGTGGGATGGGATTTGGTACTGCAGACAGATTTTGATTTCCACAGTTGAGCTGGAAA
2561 CAAACTGTGCCTTCAAAAAATGACTTTTCTAACTTAAGGTTGGTTATATGTTAAGTGTGCTACTAACTTAAAAAATAGTG
2641 GCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCGGGGGGATCACGAGGTCAGGAGATCGAG
2721 ACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAACACACAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTG
2801 TAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGACAGCG
2881 CCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATAGTGCACTCTCTGGC
2961 TGGTCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGAAGGCCAAGGCAGGCGGATCACGAGGTCAGAAGATCGAGAC
3041 CATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGTCGGGCATGGTGGCGGGCGCCTGTAGT
3121 CCCAACTACTCGGGAGACTGAGGCAGAAGAATGGCGTGAACTCAGGAGGCGGAGCTTGCAGTGAGCCAAGGCGACAGAGC
3201 AAGACTCTGTCTCAAAAAATAAAAAATAGTGCACTGTCCTTCGAGAAAGTTTTCTAACATCTAGTAATTTGTAACTTAGA
3281 AGTGGAGTTGCCTTGTGGATGTCTTTTTTGCATTCTGTAGGAAATGAAACGTGAATTTAACTCGGGTTGCAAGAAATAAA
3361 AATGTCAGTGCATTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuACGAG-----AGACAUGAGUGUGUu 5'
            ||:|:     ||   |:||||||| 
Target 5' ttTGTTTAGGAGTCATCATTCACACAc 3'
456 - 482 148.00 -9.40
2
miRNA  3' cuACGAGAGACA-UGAGUGUGuu 5'
            || || | || :|||||:|  
Target 5' gcTGGTCACGGTGGCTCACGCct 3'
2959 - 2981 128.00 -12.50
3
miRNA  3' cuacGAGA-GACAUGAGUGUGUu 5'
              |||| ||  |  |||||| 
Target 5' ccatCTCTACTAAAAACACACAa 3'
2747 - 2769 126.00 -12.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
901296 7 ClinVar
901297 27 ClinVar
901298 62 ClinVar
340838 124 ClinVar
340839 139 ClinVar
901299 211 ClinVar
340840 241 ClinVar
901845 243 ClinVar
340841 256 ClinVar
901846 268 ClinVar
340842 421 ClinVar
340843 473 ClinVar
340844 476 ClinVar
340845 476 ClinVar
340846 476 ClinVar
340847 476 ClinVar
901847 497 ClinVar
340848 504 ClinVar
901848 508 ClinVar
340850 512 ClinVar
340849 514 ClinVar
340851 516 ClinVar
340852 518 ClinVar
340853 520 ClinVar
340854 522 ClinVar
902756 591 ClinVar
340855 615 ClinVar
902757 625 ClinVar
340856 741 ClinVar
902758 756 ClinVar
340857 781 ClinVar
340858 817 ClinVar
900192 823 ClinVar
340859 841 ClinVar
900193 949 ClinVar
900194 992 ClinVar
340860 1062 ClinVar
340861 1130 ClinVar
900195 1175 ClinVar
340862 1316 ClinVar
901361 1438 ClinVar
901362 1439 ClinVar
340863 1491 ClinVar
340864 1520 ClinVar
340865 1544 ClinVar
340866 1564 ClinVar
340867 1571 ClinVar
340868 1590 ClinVar
340869 1668 ClinVar
901904 1676 ClinVar
340870 1790 ClinVar
901905 1875 ClinVar
340871 2029 ClinVar
901906 2040 ClinVar
340872 2053 ClinVar
902816 2060 ClinVar
340873 2106 ClinVar
340874 2112 ClinVar
340875 2112 ClinVar
340876 2144 ClinVar
340877 2169 ClinVar
902817 2172 ClinVar
340878 2180 ClinVar
340879 2262 ClinVar
340880 2262 ClinVar
900254 2278 ClinVar
900255 2281 ClinVar
340881 2305 ClinVar
900256 2365 ClinVar
340882 2412 ClinVar
900257 2413 ClinVar
900258 2485 ClinVar
340883 2502 ClinVar
340884 2552 ClinVar
340885 2562 ClinVar
901416 2679 ClinVar
340886 2693 ClinVar
901417 2713 ClinVar
901418 2739 ClinVar
901419 2750 ClinVar
340887 2778 ClinVar
340888 2784 ClinVar
340889 2792 ClinVar
340890 2796 ClinVar
901966 2797 ClinVar
340891 2817 ClinVar
340892 2857 ClinVar
901967 2869 ClinVar
340893 2873 ClinVar
340894 2880 ClinVar
902989 2893 ClinVar
340895 2913 ClinVar
340896 2923 ClinVar
340897 2923 ClinVar
902990 2945 ClinVar
340898 2962 ClinVar
902991 3015 ClinVar
340899 3016 ClinVar
340900 3036 ClinVar
340901 3108 ClinVar
899374 3157 ClinVar
340902 3172 ClinVar
340903 3194 ClinVar
899375 3234 ClinVar
899376 3247 ClinVar
340904 3253 ClinVar
900496 3269 ClinVar
900497 3284 ClinVar
900498 3285 ClinVar
900499 3286 ClinVar
COSN1259454 9 COSMIC
COSN8892133 17 COSMIC
COSN510808 21 COSMIC
COSN30171278 28 COSMIC
COSN30107976 43 COSMIC
COSN31512431 48 COSMIC
COSN30455247 63 COSMIC
COSN30114665 98 COSMIC
COSN31566979 116 COSMIC
COSN17431854 421 COSMIC
COSN20117160 514 COSMIC
COSN20117161 516 COSMIC
COSN14627862 520 COSMIC
COSN27322018 521 COSMIC
COSN23987323 522 COSMIC
COSN17316848 1129 COSMIC
COSN14458254 2112 COSMIC
COSN28471803 2122 COSMIC
COSN32055857 2255 COSMIC
COSN32170576 2502 COSMIC
COSN5989108 2563 COSMIC
COSN32170577 2654 COSMIC
COSN18002529 2700 COSMIC
COSN23953982 2739 COSMIC
COSN25611813 2750 COSMIC
COSN32170578 2857 COSMIC
COSN21779509 3163 COSMIC
COSN32170579 3184 COSMIC
COSN14539070 3280 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs982756199 6 dbSNP
rs370326257 7 dbSNP
rs759358535 9 dbSNP
rs373817661 10 dbSNP
rs1371459086 17 dbSNP
rs920562754 22 dbSNP
rs568585873 23 dbSNP
rs144082104 27 dbSNP
rs1228812388 29 dbSNP
rs749180383 30 dbSNP
rs1232508501 36 dbSNP
rs768473559 39 dbSNP
rs184813167 46 dbSNP
rs1203228339 47 dbSNP
rs747960930 48 dbSNP
rs1489277935 50 dbSNP
rs1238290226 52 dbSNP
rs571007119 53 dbSNP
rs539155980 62 dbSNP
rs3202072 66 dbSNP
rs944491618 70 dbSNP
rs1440265790 79 dbSNP
rs556620539 97 dbSNP
rs761553472 99 dbSNP
rs1052023587 100 dbSNP
rs1486461857 101 dbSNP
rs1192363105 104 dbSNP
rs569612850 109 dbSNP
rs1164679258 115 dbSNP
rs892140839 118 dbSNP
rs3171741 124 dbSNP
rs759793507 125 dbSNP
rs1165109785 126 dbSNP
rs1043955349 131 dbSNP
rs375995790 139 dbSNP
rs1183046526 149 dbSNP
rs1002763606 152 dbSNP
rs1035211100 153 dbSNP
rs1205444325 157 dbSNP
rs987913914 160 dbSNP
rs1403451998 168 dbSNP
rs961045700 181 dbSNP
rs1322309494 184 dbSNP
rs943483547 197 dbSNP
rs1226608040 198 dbSNP
rs751705316 203 dbSNP
rs920449599 210 dbSNP
rs1015563368 211 dbSNP
rs1364098809 214 dbSNP
rs962699875 216 dbSNP
rs1293358277 217 dbSNP
rs974104566 218 dbSNP
rs1027972405 222 dbSNP
rs1370660603 231 dbSNP
rs886057265 241 dbSNP
rs538225254 243 dbSNP
rs1338440381 248 dbSNP
rs911743326 254 dbSNP
rs187586025 256 dbSNP
rs987854202 258 dbSNP
rs1473391011 263 dbSNP
rs540777135 265 dbSNP
rs913695397 268 dbSNP
rs946380249 269 dbSNP
rs1043394935 275 dbSNP
rs1012021392 282 dbSNP
rs1328564011 288 dbSNP
rs1289143183 310 dbSNP
rs905417666 314 dbSNP
rs1283264981 317 dbSNP
rs1329510258 319 dbSNP
rs1300882675 320 dbSNP
rs1387634331 322 dbSNP
rs1393341010 323 dbSNP
rs1319115366 349 dbSNP
rs1023099324 353 dbSNP
rs150339331 356 dbSNP
rs938288423 357 dbSNP
rs1056999513 360 dbSNP
rs1159319718 369 dbSNP
rs1486332340 374 dbSNP
rs111283820 377 dbSNP
rs1004422391 388 dbSNP
rs1015678121 392 dbSNP
rs898610917 398 dbSNP
rs543685574 399 dbSNP
rs1028343470 403 dbSNP
rs956510953 404 dbSNP
rs1408397513 407 dbSNP
rs178077 421 dbSNP
rs531705080 428 dbSNP
rs1234313775 431 dbSNP
rs964744983 433 dbSNP
rs1377184509 434 dbSNP
rs974803237 436 dbSNP
rs1436737551 452 dbSNP
rs1019156033 464 dbSNP
rs535250778 468 dbSNP
rs1323178082 471 dbSNP
rs1334883503 472 dbSNP
rs1401874375 472 dbSNP
rs886057266 472 dbSNP
rs1171630471 474 dbSNP
rs1301450037 475 dbSNP
rs1169574424 476 dbSNP
rs1188275342 476 dbSNP
rs1192678921 476 dbSNP
rs1204721308 476 dbSNP
rs1249810947 476 dbSNP
rs1332979160 476 dbSNP
rs1363748977 476 dbSNP
rs1367940914 476 dbSNP
rs1376850992 476 dbSNP
rs1390616744 476 dbSNP
rs1428796802 476 dbSNP
rs1444231243 476 dbSNP
rs575240461 476 dbSNP
rs760058624 476 dbSNP
rs767127977 476 dbSNP
rs886057267 476 dbSNP
rs886057268 476 dbSNP
rs965849561 476 dbSNP
rs1483579431 478 dbSNP
rs372797140 479 dbSNP
rs1446028768 480 dbSNP
rs1285328880 481 dbSNP
rs1281673241 482 dbSNP
rs1378021799 483 dbSNP
rs1356827953 484 dbSNP
rs987970700 486 dbSNP
rs930471484 488 dbSNP
rs1240073684 490 dbSNP
rs1408907921 490 dbSNP
rs542254334 491 dbSNP
rs1307785628 492 dbSNP
rs913643130 493 dbSNP
rs1211026269 494 dbSNP
rs1403415482 496 dbSNP
rs1389874859 497 dbSNP
rs907767630 498 dbSNP
rs1277263763 500 dbSNP
rs939294621 501 dbSNP
rs1440370989 502 dbSNP
rs1206105936 503 dbSNP
rs368659383 504 dbSNP
rs775805983 504 dbSNP
rs886057269 504 dbSNP
rs755038603 506 dbSNP
rs764550787 506 dbSNP
rs1451394898 507 dbSNP
rs1176542350 508 dbSNP
rs1336293874 510 dbSNP
rs757531727 510 dbSNP
rs758064158 510 dbSNP
rs750690559 512 dbSNP
rs771299879 512 dbSNP
rs886057270 512 dbSNP
rs1454642137 514 dbSNP
rs371833796 514 dbSNP
rs780186197 514 dbSNP
rs1056105375 516 dbSNP
rs1433950101 516 dbSNP
rs376990505 516 dbSNP
rs767197022 516 dbSNP
rs1324112972 518 dbSNP
rs747974281 518 dbSNP
rs766278567 518 dbSNP
rs1189704840 520 dbSNP
rs1491520721 520 dbSNP
rs200263284 520 dbSNP
rs1173257481 521 dbSNP
rs869080225 521 dbSNP
rs361998 522 dbSNP
rs1412984681 525 dbSNP
rs1331068002 528 dbSNP
rs1401282115 529 dbSNP
rs947750822 532 dbSNP
rs1463973275 536 dbSNP
rs1043486800 550 dbSNP
rs1446594755 556 dbSNP
rs1207506819 559 dbSNP
rs903642661 570 dbSNP
rs1329240334 572 dbSNP
rs946485062 575 dbSNP
rs1217179415 578 dbSNP
rs1032283808 585 dbSNP
rs1275268674 586 dbSNP
rs892016031 590 dbSNP
rs1362886220 595 dbSNP
rs979477592 603 dbSNP
rs1480082382 608 dbSNP
rs1435828188 609 dbSNP
rs1018910474 612 dbSNP
rs192171507 615 dbSNP
rs974750838 620 dbSNP
rs1273741410 621 dbSNP
rs1175867830 623 dbSNP
rs372543595 625 dbSNP
rs1247876560 626 dbSNP
rs199502846 634 dbSNP
rs1027693594 635 dbSNP
rs1485902199 637 dbSNP
rs1056714802 641 dbSNP
rs1207549743 642 dbSNP
rs896774601 643 dbSNP
rs1236174317 655 dbSNP
rs1339813697 657 dbSNP
rs1296762222 663 dbSNP
rs1435806496 667 dbSNP
rs1364127412 670 dbSNP
rs1301215888 673 dbSNP
rs1447422059 675 dbSNP
rs940158430 678 dbSNP
rs1037226907 685 dbSNP
rs1390011043 686 dbSNP
rs1430852091 690 dbSNP
rs939242951 695 dbSNP
rs1196580347 696 dbSNP
rs750329338 703 dbSNP
rs1482663869 704 dbSNP
rs898558826 706 dbSNP
rs1212644119 708 dbSNP
rs1481945818 709 dbSNP
rs1273695814 716 dbSNP
rs1228032723 719 dbSNP
rs1468884694 727 dbSNP
rs571012382 728 dbSNP
rs916534542 730 dbSNP
rs947697329 731 dbSNP
rs1295336686 732 dbSNP
rs756459625 735 dbSNP
rs79383799 741 dbSNP
rs116984278 756 dbSNP
rs935086540 757 dbSNP
rs1164701825 759 dbSNP
rs1422673831 773 dbSNP
rs1418028657 778 dbSNP
rs543150102 781 dbSNP
rs1471432701 783 dbSNP
rs1053265735 794 dbSNP
rs1008686087 796 dbSNP
rs1397059646 801 dbSNP
rs891964171 804 dbSNP
rs1323550216 814 dbSNP
rs1317275126 815 dbSNP
rs1335543644 817 dbSNP
rs886057271 817 dbSNP
rs570028475 818 dbSNP
rs535040690 822 dbSNP
rs769097170 823 dbSNP
rs1278255772 824 dbSNP
rs576879349 829 dbSNP
rs1308021258 830 dbSNP
rs1216370094 834 dbSNP
rs554942555 841 dbSNP
rs1020755919 849 dbSNP
rs1365949723 853 dbSNP
rs1293451002 854 dbSNP
rs1458897442 861 dbSNP
rs1394543660 879 dbSNP
rs1166402915 880 dbSNP
rs1455216377 881 dbSNP
rs967735766 885 dbSNP
rs1410679876 901 dbSNP
rs1356715076 904 dbSNP
rs879155204 914 dbSNP
rs979206207 915 dbSNP
rs12161075 918 dbSNP
rs926404555 922 dbSNP
rs952102525 925 dbSNP
rs1005395741 929 dbSNP
rs1275001226 935 dbSNP
rs959061372 944 dbSNP
rs1328590793 945 dbSNP
rs992263090 962 dbSNP
rs1014725468 963 dbSNP
rs918154820 977 dbSNP
rs940274540 982 dbSNP
rs960813901 987 dbSNP
rs992043602 989 dbSNP
rs868124207 992 dbSNP
rs184187563 994 dbSNP
rs1442125631 996 dbSNP
rs920100567 998 dbSNP
rs1263930999 1003 dbSNP
rs1319134526 1012 dbSNP
rs188591324 1020 dbSNP
rs1383689449 1021 dbSNP
rs1158782214 1023 dbSNP
rs534403735 1025 dbSNP
rs1455060719 1026 dbSNP
rs1375700399 1028 dbSNP
rs1477622737 1030 dbSNP
rs1049835659 1044 dbSNP
rs557600796 1062 dbSNP
rs889904652 1063 dbSNP
rs1458800655 1068 dbSNP
rs577744141 1076 dbSNP
rs796238581 1078 dbSNP
rs1262560011 1080 dbSNP
rs1163008049 1091 dbSNP
rs1207092670 1095 dbSNP
rs1389271004 1096 dbSNP
rs1402903289 1097 dbSNP
rs1008217526 1099 dbSNP
rs1255658258 1103 dbSNP
rs1235392632 1104 dbSNP
rs1350518320 1107 dbSNP
rs1296029588 1112 dbSNP
rs770590063 1122 dbSNP
rs543269890 1126 dbSNP
rs165801 1130 dbSNP
rs1383440294 1159 dbSNP
rs1399561862 1160 dbSNP
rs1020703681 1162 dbSNP
rs967851745 1167 dbSNP
rs1435042925 1173 dbSNP
rs115096183 1177 dbSNP
rs542990607 1186 dbSNP
rs944869306 1189 dbSNP
rs1040544962 1190 dbSNP
rs1373592730 1201 dbSNP
rs1195363889 1219 dbSNP
rs1440773380 1224 dbSNP
rs1255660509 1232 dbSNP
rs1211935240 1245 dbSNP
rs1033421789 1246 dbSNP
rs562057059 1256 dbSNP
rs1272986008 1257 dbSNP
rs780725194 1269 dbSNP
rs1205049167 1270 dbSNP
rs1340616166 1274 dbSNP
rs959406628 1283 dbSNP
rs1228890899 1287 dbSNP
rs991814926 1290 dbSNP
rs917603023 1298 dbSNP
rs1217193816 1311 dbSNP
rs961587397 1312 dbSNP
rs41277337 1316 dbSNP
rs1377022964 1318 dbSNP
rs1191595307 1337 dbSNP
rs1305896117 1342 dbSNP
rs541495023 1350 dbSNP
rs1397038557 1352 dbSNP
rs1004918419 1357 dbSNP
rs931492373 1384 dbSNP
rs1050379412 1387 dbSNP
rs1015419162 1392 dbSNP
rs1188884798 1394 dbSNP
rs960844592 1397 dbSNP
rs1249918914 1399 dbSNP
rs73390442 1400 dbSNP
rs1367046783 1403 dbSNP
rs1438760634 1403 dbSNP
rs1208643662 1413 dbSNP
rs1353644628 1414 dbSNP
rs1272039662 1433 dbSNP
rs1233386542 1434 dbSNP
rs1356926944 1438 dbSNP
rs1286072196 1443 dbSNP
rs1441133900 1445 dbSNP
rs1336187324 1448 dbSNP
rs796619891 1469 dbSNP
rs1393800911 1472 dbSNP
rs1165685102 1481 dbSNP
rs533532149 1484 dbSNP
rs181576723 1487 dbSNP
rs12168260 1491 dbSNP
rs956568438 1499 dbSNP
rs1470711129 1507 dbSNP
rs165861 1520 dbSNP
rs762945292 1528 dbSNP
rs9613204 1544 dbSNP
rs943832787 1552 dbSNP
rs1000685750 1553 dbSNP
rs1254208545 1559 dbSNP
rs11577 1564 dbSNP
rs534348201 1571 dbSNP
rs1331395320 1574 dbSNP
rs1265831751 1580 dbSNP
rs1222917634 1589 dbSNP
rs530035476 1590 dbSNP
rs1281119615 1596 dbSNP
rs1049293098 1597 dbSNP
rs1024608498 1607 dbSNP
rs367558383 1608 dbSNP
rs571265554 1608 dbSNP
rs896532167 1625 dbSNP
rs1386623882 1633 dbSNP
rs1158653294 1635 dbSNP
rs972431403 1636 dbSNP
rs1171140791 1640 dbSNP
rs1027219264 1642 dbSNP
rs537203663 1646 dbSNP
rs985614866 1647 dbSNP
rs1469414083 1655 dbSNP
rs556874078 1655 dbSNP
rs911384597 1656 dbSNP
rs370941828 1668 dbSNP
rs1214603952 1669 dbSNP
rs1308532797 1674 dbSNP
rs944104520 1676 dbSNP
rs546890957 1677 dbSNP
rs1217197850 1679 dbSNP
rs1214607365 1683 dbSNP
rs913359642 1704 dbSNP
rs946033487 1707 dbSNP
rs905036659 1708 dbSNP
rs1363084148 1710 dbSNP
rs1043069279 1711 dbSNP
rs1431606485 1718 dbSNP
rs1347113058 1722 dbSNP
rs184756058 1728 dbSNP
rs956674777 1733 dbSNP
rs1176042127 1736 dbSNP
rs936603736 1745 dbSNP
rs1419450530 1750 dbSNP
rs1054926444 1751 dbSNP
rs894979147 1753 dbSNP
rs750612890 1767 dbSNP
rs1019292092 1770 dbSNP
rs965478291 1778 dbSNP
rs1280835191 1782 dbSNP
rs1212911950 1783 dbSNP
rs1013458921 1784 dbSNP
rs572445975 1789 dbSNP
rs756339493 1790 dbSNP
rs142612920 1791 dbSNP
rs896929315 1792 dbSNP
rs993819180 1805 dbSNP
rs1027077535 1806 dbSNP
rs1459414914 1807 dbSNP
rs1179648953 1812 dbSNP
rs1414435801 1813 dbSNP
rs921046092 1816 dbSNP
rs1315108864 1828 dbSNP
rs932148790 1834 dbSNP
rs564562266 1839 dbSNP
rs952957235 1842 dbSNP
rs909440624 1850 dbSNP
rs1421073691 1851 dbSNP
rs1177626341 1853 dbSNP
rs986126482 1855 dbSNP
rs1474707763 1856 dbSNP
rs1018564895 1886 dbSNP
rs965927932 1887 dbSNP
rs1036746455 1888 dbSNP
rs976913581 1890 dbSNP
rs1479551332 1895 dbSNP
rs1465235156 1900 dbSNP
rs1300779151 1902 dbSNP
rs896485694 1903 dbSNP
rs1447303166 1907 dbSNP
rs1271414070 1911 dbSNP
rs1232768350 1917 dbSNP
rs578034277 1922 dbSNP
rs1330403940 1925 dbSNP
rs1374600328 1929 dbSNP
rs1356263128 1942 dbSNP
rs1295382354 1950 dbSNP
rs1236355045 1957 dbSNP
rs1408336134 1961 dbSNP
rs771626176 1964 dbSNP
rs1312791531 1965 dbSNP
rs913307088 1970 dbSNP
rs1445072927 1973 dbSNP
rs946149409 1977 dbSNP
rs1355757741 1982 dbSNP
rs1162098334 1983 dbSNP
rs1232602541 1992 dbSNP
rs189574681 1997 dbSNP
rs1166711517 2000 dbSNP
rs1417053978 2003 dbSNP
rs1459234319 2009 dbSNP
rs1199715105 2014 dbSNP
rs1249640883 2020 dbSNP
rs1177699621 2021 dbSNP
rs563529946 2029 dbSNP
rs1251068081 2034 dbSNP
rs1213104811 2035 dbSNP
rs779333114 2038 dbSNP
rs746231023 2040 dbSNP
rs1032207097 2045 dbSNP
rs74557072 2053 dbSNP
rs1173308922 2054 dbSNP
rs895101231 2058 dbSNP
rs1393512417 2059 dbSNP
rs186489004 2060 dbSNP
rs1425393855 2070 dbSNP
rs1439498017 2079 dbSNP
rs1394638188 2093 dbSNP
rs1009505781 2094 dbSNP
rs190922576 2097 dbSNP
rs1169735946 2098 dbSNP
rs1362878585 2102 dbSNP
rs1397769199 2105 dbSNP
rs5752201 2106 dbSNP
rs1028010905 2112 dbSNP
rs551094177 2112 dbSNP
rs886057272 2112 dbSNP
rs965022857 2112 dbSNP
rs531862444 2113 dbSNP
rs1366810777 2121 dbSNP
rs536738724 2122 dbSNP
rs1261530585 2126 dbSNP
rs1241567666 2129 dbSNP
rs181627874 2138 dbSNP
rs1303277996 2139 dbSNP
rs1235760618 2140 dbSNP
rs1320294330 2143 dbSNP
rs370242754 2144 dbSNP
rs1380033996 2148 dbSNP
rs1383745836 2153 dbSNP
rs1289112058 2161 dbSNP
rs1421265406 2162 dbSNP
rs984894233 2164 dbSNP
rs536474432 2166 dbSNP
rs886057273 2169 dbSNP
rs866349039 2175 dbSNP
rs553271593 2180 dbSNP
rs972349238 2186 dbSNP
rs888104939 2187 dbSNP
rs1262629993 2189 dbSNP
rs1006598562 2191 dbSNP
rs918200774 2197 dbSNP
rs755372395 2201 dbSNP
rs965629445 2202 dbSNP
rs1268966314 2204 dbSNP
rs146027253 2206 dbSNP
rs1020428754 2211 dbSNP
rs1295808310 2215 dbSNP
rs1401534771 2220 dbSNP
rs1045115539 2225 dbSNP
rs1188977200 2226 dbSNP
rs1311980665 2227 dbSNP
rs926683465 2232 dbSNP
rs1264658854 2238 dbSNP
rs967396570 2239 dbSNP
rs978822617 2250 dbSNP
rs534968594 2261 dbSNP
rs165744 2262 dbSNP
rs775605635 2270 dbSNP
rs115923524 2278 dbSNP
rs543535379 2281 dbSNP
rs949293280 2287 dbSNP
rs1046237598 2296 dbSNP
rs1486871194 2301 dbSNP
rs1040963696 2303 dbSNP
rs886057274 2305 dbSNP
rs901120462 2306 dbSNP
rs563469455 2307 dbSNP
rs1332123202 2309 dbSNP
rs1349276426 2312 dbSNP
rs573867053 2316 dbSNP
rs1342090394 2327 dbSNP
rs1301403362 2330 dbSNP
rs1390811517 2339 dbSNP
rs918434313 2343 dbSNP
rs1397144775 2346 dbSNP
rs1342371584 2365 dbSNP
rs929831198 2367 dbSNP
rs756798079 2372 dbSNP
rs760927522 2389 dbSNP
rs1027957112 2390 dbSNP
rs1165988051 2401 dbSNP
rs186251828 2408 dbSNP
rs139989203 2412 dbSNP
rs528779987 2413 dbSNP
rs901410064 2415 dbSNP
rs1016809067 2416 dbSNP
rs998395400 2419 dbSNP
rs1199936073 2425 dbSNP
rs1332055578 2430 dbSNP
rs1020375078 2431 dbSNP
rs967511223 2436 dbSNP
rs1313824469 2443 dbSNP
rs552092485 2445 dbSNP
rs1321678176 2446 dbSNP
rs972682815 2447 dbSNP
rs1000408198 2448 dbSNP
rs1219924578 2449 dbSNP
rs1287561006 2450 dbSNP
rs918159439 2456 dbSNP
rs1438776550 2457 dbSNP
rs970999413 2457 dbSNP
rs1260639622 2463 dbSNP
rs1393888229 2468 dbSNP
rs564712017 2469 dbSNP
rs1326821307 2477 dbSNP
rs532316531 2482 dbSNP
rs1473562132 2484 dbSNP
rs367880062 2485 dbSNP
rs1182254567 2493 dbSNP
rs958845967 2495 dbSNP
rs112984030 2502 dbSNP
rs1470733341 2504 dbSNP
rs1382647313 2509 dbSNP
rs1192356053 2510 dbSNP
rs1421987696 2511 dbSNP
rs1160323112 2514 dbSNP
rs1251903009 2514 dbSNP
rs917269858 2518 dbSNP
rs567385933 2523 dbSNP
rs529877604 2536 dbSNP
rs1361070981 2546 dbSNP
rs73162856 2552 dbSNP
rs1297636222 2556 dbSNP
rs1351196995 2558 dbSNP
rs1311329181 2562 dbSNP
rs886057275 2562 dbSNP
rs1232079102 2566 dbSNP
rs1364106157 2567 dbSNP
rs936701336 2584 dbSNP
rs1053884107 2585 dbSNP
rs1343680921 2587 dbSNP
rs566704425 2589 dbSNP
rs191563769 2599 dbSNP
rs1343611254 2607 dbSNP
rs1317930166 2622 dbSNP
rs183376538 2624 dbSNP
rs1378827724 2625 dbSNP
rs1172304430 2630 dbSNP
rs569328966 2639 dbSNP
rs1454178311 2644 dbSNP
rs1226954848 2648 dbSNP
rs1312184473 2650 dbSNP
rs918549333 2651 dbSNP
rs201729661 2660 dbSNP
rs1214682151 2671 dbSNP
rs1283201755 2675 dbSNP
rs1443816656 2676 dbSNP
rs537067283 2679 dbSNP
rs1236689801 2689 dbSNP
rs1280991716 2693 dbSNP
rs148419415 2693 dbSNP
rs942483754 2694 dbSNP
rs1360013519 2696 dbSNP
rs1180246055 2697 dbSNP
rs1380896452 2698 dbSNP
rs1039738399 2704 dbSNP
rs1431832434 2705 dbSNP
rs1342629694 2712 dbSNP
rs1158159445 2713 dbSNP
rs1434524759 2717 dbSNP
rs1049342460 2718 dbSNP
rs1416855003 2719 dbSNP
rs1185557233 2724 dbSNP
rs1405797538 2725 dbSNP
rs1416395142 2734 dbSNP
rs1335174074 2738 dbSNP
rs1358798270 2739 dbSNP
rs888120492 2746 dbSNP
rs1333759236 2750 dbSNP
rs1212197689 2754 dbSNP
rs1005662258 2762 dbSNP
rs1446646804 2764 dbSNP
rs1277266461 2766 dbSNP
rs1272311247 2768 dbSNP
rs1346430231 2768 dbSNP
rs1015343265 2770 dbSNP
rs896923461 2776 dbSNP
rs900854231 2777 dbSNP
rs374333957 2778 dbSNP
rs1414528901 2780 dbSNP
rs142566638 2784 dbSNP
rs766229233 2785 dbSNP
rs1305109043 2791 dbSNP
rs187911143 2792 dbSNP
rs1033193587 2793 dbSNP
rs9625042 2796 dbSNP
rs562935601 2797 dbSNP
rs1033645756 2802 dbSNP
rs1457269562 2804 dbSNP
rs958056491 2806 dbSNP
rs1176640022 2810 dbSNP
rs545358344 2816 dbSNP
rs165739 2817 dbSNP
rs1173204852 2821 dbSNP
rs1424784025 2822 dbSNP
rs1271474590 2823 dbSNP
rs972084975 2828 dbSNP
rs1025555041 2829 dbSNP
rs1173313220 2832 dbSNP
rs1401395075 2841 dbSNP
rs1446707014 2847 dbSNP
rs1327499183 2848 dbSNP
rs1333324928 2849 dbSNP
rs1436637732 2856 dbSNP
rs9625044 2857 dbSNP
rs1401890992 2860 dbSNP
rs1323471044 2862 dbSNP
rs1460647020 2866 dbSNP
rs554030574 2868 dbSNP
rs544238315 2872 dbSNP
rs111581119 2873 dbSNP
rs1166602446 2874 dbSNP
rs922440344 2876 dbSNP
rs140626919 2880 dbSNP
rs536489429 2881 dbSNP
rs546755935 2893 dbSNP
rs932535066 2896 dbSNP
rs886057276 2913 dbSNP
rs1488890966 2919 dbSNP
rs1267486525 2920 dbSNP
rs1193853861 2922 dbSNP
rs1214028870 2922 dbSNP
rs1259823818 2923 dbSNP
rs1294979639 2923 dbSNP
rs1300550853 2923 dbSNP
rs1310586548 2923 dbSNP
rs1316746104 2923 dbSNP
rs1385766236 2923 dbSNP
rs1390946992 2923 dbSNP
rs1393202147 2923 dbSNP
rs1421380468 2923 dbSNP
rs1451323037 2923 dbSNP
rs361606 2923 dbSNP
rs765313174 2923 dbSNP
rs772687254 2923 dbSNP
rs886057277 2923 dbSNP
rs1291992847 2928 dbSNP
rs1452085202 2929 dbSNP
rs1193042544 2930 dbSNP
rs1433865492 2931 dbSNP
rs1199700862 2938 dbSNP
rs1185035865 2945 dbSNP
rs1485741542 2945 dbSNP
rs1049622406 2946 dbSNP
rs1479581423 2949 dbSNP
rs888400973 2950 dbSNP
rs941020906 2952 dbSNP
rs165715 2962 dbSNP
rs896876459 2963 dbSNP
rs1465492154 2966 dbSNP
rs984338036 2969 dbSNP
rs909719644 2970 dbSNP
rs1179823820 2978 dbSNP
rs942409768 2979 dbSNP
rs975125385 2980 dbSNP
rs150394347 2983 dbSNP
rs1171975507 2985 dbSNP
rs1466588509 2995 dbSNP
rs1379509691 3001 dbSNP
rs767162203 3015 dbSNP
rs145199625 3016 dbSNP
rs1264171115 3019 dbSNP
rs903415199 3022 dbSNP
rs936283381 3023 dbSNP
rs1002408958 3025 dbSNP
rs1169587113 3028 dbSNP
rs1054989810 3030 dbSNP
rs886057278 3036 dbSNP
rs1013543663 3037 dbSNP
rs958560156 3042 dbSNP
rs1024379410 3048 dbSNP
rs1316879705 3050 dbSNP
rs1278467456 3052 dbSNP
rs1401592459 3056 dbSNP
rs1353371465 3064 dbSNP
rs1333420879 3068 dbSNP
rs907316918 3070 dbSNP
rs1278519954 3071 dbSNP
rs1404281762 3072 dbSNP
rs1339411689 3077 dbSNP
rs1225034211 3078 dbSNP
rs1285684499 3080 dbSNP
rs993470074 3081 dbSNP
rs1357003031 3082 dbSNP
rs562345974 3083 dbSNP
rs1424581382 3084 dbSNP
rs569148033 3084 dbSNP
rs976811010 3092 dbSNP
rs1218879095 3095 dbSNP
rs371214200 3096 dbSNP
rs1477604454 3097 dbSNP
rs1444571105 3099 dbSNP
rs1191531358 3100 dbSNP
rs1370500168 3101 dbSNP
rs1473422429 3104 dbSNP
rs886057279 3108 dbSNP
rs755881253 3109 dbSNP
rs1283318946 3111 dbSNP
rs1332390129 3111 dbSNP
rs1245245974 3112 dbSNP
rs556933912 3113 dbSNP
rs1421033482 3123 dbSNP
rs1298253057 3124 dbSNP
rs575309035 3126 dbSNP
rs1401213310 3130 dbSNP
rs1333606638 3132 dbSNP
rs963908541 3133 dbSNP
rs567363956 3134 dbSNP
rs1335941790 3138 dbSNP
rs374710912 3146 dbSNP
rs1164159534 3147 dbSNP
rs1340786269 3148 dbSNP
rs1243774895 3157 dbSNP
rs1312914845 3163 dbSNP
rs922721206 3164 dbSNP
rs536332118 3165 dbSNP
rs1242463727 3167 dbSNP
rs1238315517 3171 dbSNP
rs1438535126 3171 dbSNP
rs886057280 3172 dbSNP
rs1485669610 3176 dbSNP
rs1466808395 3179 dbSNP
rs1210192900 3193 dbSNP
rs369028501 3193 dbSNP
rs553460221 3194 dbSNP
rs573331335 3196 dbSNP
rs933755042 3198 dbSNP
rs1443420737 3200 dbSNP
rs1277702079 3204 dbSNP
rs1239414391 3205 dbSNP
rs909791267 3205 dbSNP
rs977031867 3206 dbSNP
rs1438846645 3209 dbSNP
rs1330695486 3210 dbSNP
rs941290726 3214 dbSNP
rs1407401462 3216 dbSNP
rs868828878 3216 dbSNP
rs1036678609 3230 dbSNP
rs191082970 3234 dbSNP
rs1420777105 3238 dbSNP
rs1382702765 3239 dbSNP
rs1179922736 3240 dbSNP
rs949796841 3243 dbSNP
rs936215174 3244 dbSNP
rs149152565 3247 dbSNP
rs376610436 3253 dbSNP
rs1281817296 3259 dbSNP
rs1451193557 3262 dbSNP
rs1002359913 3264 dbSNP
rs1055312902 3269 dbSNP
rs773222364 3283 dbSNP
rs916175198 3284 dbSNP
rs948903807 3285 dbSNP
rs112322969 3286 dbSNP
rs1438947161 3288 dbSNP
rs1011577596 3291 dbSNP
rs560856661 3297 dbSNP
rs768094811 3304 dbSNP
rs967103739 3310 dbSNP
rs1362949198 3318 dbSNP
rs993584757 3327 dbSNP
rs1412259659 3331 dbSNP
rs1047726376 3332 dbSNP
rs887778110 3333 dbSNP
rs12484354 3342 dbSNP
rs1006672681 3344 dbSNP
rs985232824 3345 dbSNP
rs1488523537 3363 dbSNP
rs1016833343 3364 dbSNP
rs1316475715 3372 dbSNP
rs962620519 3373 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9342.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuacgagagacaUGAGUGUGUu 5'
                      |:||||||| 
Target 5' ------------AUUCACACAc 3'
1 - 10
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202478. RNA binding protein: AGO2. Condition:S3_LV_36yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuacgagagacaUGAGUGUGUu 5'
                      |:||||||| 
Target 5' ------------AUUCACACAc 3'
1 - 10
Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000215730.7 | 3UTR | AUUCACACACACACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
140 hsa-miR-6818-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071796 RNF11 ring finger protein 11 2 2
MIRT077120 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT079951 RNF138 ring finger protein 138 2 2
MIRT102968 EN2 engrailed homeobox 2 2 4
MIRT115694 MGRN1 mahogunin ring finger 1 2 2
MIRT121074 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT143171 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT145635 LASP1 LIM and SH3 protein 1 2 2
MIRT282026 ARID3B AT-rich interaction domain 3B 2 6
MIRT301684 EP300 E1A binding protein p300 2 2
MIRT328627 AKIRIN1 akirin 1 2 2
MIRT340977 IPO5 importin 5 2 2
MIRT371401 STC2 stanniocalcin 2 2 2
MIRT378008 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT445185 CCDC88C coiled-coil domain containing 88C 2 2
MIRT447120 DUSP16 dual specificity phosphatase 16 2 2
MIRT449153 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT450200 ABHD15 abhydrolase domain containing 15 2 2
MIRT453853 ZNF12 zinc finger protein 12 2 2
MIRT459077 LSM1 LSM1 homolog, mRNA degradation associated 2 2
MIRT461304 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT464137 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT468114 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT471401 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT478220 DDX52 DExD-box helicase 52 2 2
MIRT479695 CCNT1 cyclin T1 2 2
MIRT479779 CCND1 cyclin D1 2 2
MIRT484980 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485016 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485034 TMEM189 transmembrane protein 189 2 8
MIRT485221 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490143 TERF2IP TERF2 interacting protein 2 6
MIRT508908 DOK6 docking protein 6 2 6
MIRT513877 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT515966 C9orf156 tRNA methyltransferase O 2 4
MIRT517892 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT518660 CLVS2 clavesin 2 2 4
MIRT520027 YOD1 YOD1 deubiquitinase 2 6
MIRT523884 EPHA5 EPH receptor A5 2 4
MIRT529237 PORCN porcupine O-acyltransferase 2 2
MIRT535337 PFN1 profilin 1 2 2
MIRT537532 EZR ezrin 2 2
MIRT537695 ELOVL6 ELOVL fatty acid elongase 6 2 2
MIRT538494 CLOCK clock circadian regulator 2 2
MIRT539140 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT541380 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT545018 PLP1 proteolipid protein 1 2 2
MIRT547732 KIF23 kinesin family member 23 2 4
MIRT548257 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT550372 MYLK3 myosin light chain kinase 3 2 2
MIRT551867 TMEM47 transmembrane protein 47 2 2
MIRT552289 SNAP29 synaptosome associated protein 29 2 2
MIRT552902 VSNL1 visinin like 1 2 8
MIRT552990 VAMP4 vesicle associated membrane protein 4 2 4
MIRT554729 RHOC ras homolog family member C 2 2
MIRT555301 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT556832 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT557523 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT558238 EDA2R ectodysplasin A2 receptor 2 2
MIRT558920 CBX1 chromobox 1 2 2
MIRT559198 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT559611 AMER1 APC membrane recruitment protein 1 2 2
MIRT559769 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT564648 ZNF487P zinc finger protein 487 1 1
MIRT565856 NHS NHS actin remodeling regulator 2 2
MIRT569044 ZNF655 zinc finger protein 655 2 2
MIRT569154 SIGMAR1 sigma non-opioid intracellular receptor 1 2 2
MIRT569166 DMD dystrophin 2 2
MIRT569205 CASZ1 castor zinc finger 1 2 2
MIRT569264 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT569431 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT569476 CTSE cathepsin E 2 2
MIRT570232 NCAN neurocan 2 2
MIRT570519 SHH sonic hedgehog 2 2
MIRT570680 FZD5 frizzled class receptor 5 2 2
MIRT572161 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT575142 Cd93 CD93 antigen 2 3
MIRT575644 Mitf microphthalmia-associated transcription factor 2 3
MIRT575653 Synpo synaptopodin 2 4
MIRT576375 Runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 2 2
MIRT576388 Fhl2 four and a half LIM domains 2 2 3
MIRT576413 Pla2g16 phospholipase A2, group XVI 2 2
MIRT576697 Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT606872 CHST11 carbohydrate sulfotransferase 11 2 4
MIRT606940 GFRA1 GDNF family receptor alpha 1 2 6
MIRT607025 ZEB1 zinc finger E-box binding homeobox 1 2 2
MIRT607028 PPY pancreatic polypeptide 2 4
MIRT607081 MITF melanogenesis associated transcription factor 2 3
MIRT607769 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2 6
MIRT607881 SATB1 SATB homeobox 1 2 2
MIRT607996 BTBD9 BTB domain containing 9 2 2
MIRT608124 TSC22D2 TSC22 domain family member 2 2 2
MIRT608132 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT608209 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT608337 SPN sialophorin 2 2
MIRT608416 SYNPO synaptopodin 2 5
MIRT608459 CD93 CD93 molecule 2 3
MIRT608555 SBK1 SH3 domain binding kinase 1 2 6
MIRT608585 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT608785 JAKMIP2 janus kinase and microtubule interacting protein 2 2 4
MIRT608791 CDH12 cadherin 12 2 2
MIRT608816 ONECUT3 one cut homeobox 3 2 6
MIRT608876 CNTF ciliary neurotrophic factor 2 6
MIRT608881 CLIC6 chloride intracellular channel 6 2 2
MIRT608894 ZNF860 zinc finger protein 860 2 2
MIRT608954 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609007 HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT609045 INVS inversin 2 4
MIRT619037 CASS4 Cas scaffolding protein family member 4 2 2
MIRT625226 RPSAP58 ribosomal protein SA pseudogene 58 2 4
MIRT625545 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit 2 2
MIRT627333 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT627954 NLK nemo like kinase 2 2
MIRT629280 UNC13A unc-13 homolog A 2 2
MIRT634982 TNFAIP8 TNF alpha induced protein 8 2 2
MIRT646129 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646370 SLC22A6 solute carrier family 22 member 6 2 2
MIRT652743 TGFA transforming growth factor alpha 2 4
MIRT653984 SEMA6A semaphorin 6A 2 2
MIRT660038 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT663504 NKAPL NFKB activating protein like 2 4
MIRT667117 OCIAD2 OCIA domain containing 2 2 2
MIRT683747 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT683922 SLC43A3 solute carrier family 43 member 3 2 2
MIRT684101 LHFP LHFPL tetraspan subfamily member 6 2 2
MIRT684224 FGF14 fibroblast growth factor 14 2 2
MIRT685560 SRD5A3 steroid 5 alpha-reductase 3 2 2
MIRT687408 NRXN1 neurexin 1 2 2
MIRT687467 NHSL2 NHS like 2 2 2
MIRT687695 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT688094 GLRA3 glycine receptor alpha 3 2 2
MIRT688255 FHL2 four and a half LIM domains 2 2 3
MIRT688851 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT700293 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT704679 CHST2 carbohydrate sulfotransferase 2 2 2
MIRT706392 PPID peptidylprolyl isomerase D 2 2
MIRT707388 SLC35F6 solute carrier family 35 member F6 2 2
MIRT707509 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT709808 AR androgen receptor 2 2
MIRT715491 MAZ MYC associated zinc finger protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6818-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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