miRTarBase - #MIRT552786


—
pre-miRNA Information
pre-miRNA hsa-mir-7156   
Genomic Coordinates chr1: 77060143 - 77060202
Description Homo sapiens miR-7156 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7156-5p
Sequence 1| UUGUUCUCAAACUGGCUGUCAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs907711107 9 dbSNP
rs940406061 22 dbSNP
Putative Targets

Gene Information
Gene Symbol YAF2   
Synonyms -
Description YY1 associated factor 2
Transcript NM_005748   
Expression
Putative miRNA Targets on YAF2
3'UTR of YAF2
(miRNA target sites are highlighted)		 
>YAF2|NM_005748|3'UTR
   1 AGTTTATTTTCTCCAATTTCTTAGTCACTTCTGTCCTACCATGCAAATACACAGATTATGCCAAGAGGTACCACATTTTC
  81 ATGACAGATACATTCATGCACAATCCATAATTTGAGTTTTACATAAAATAGAAATTTGTTAGAATTTGTTAGATTTTATT
 161 GCAATGATGCCTACCAAACATTTCCAGACTTAACATTTTGGTCTCTGCAGTTAAGTGCCATGAAAATGTGGTTGAATTAT
 241 TCATTATGCAGTGTTATTGGTAAGTGTATTTTCACTTTTAGTTTAGTGAATTCTAACACATAATTCTTGAATTCTCTACT
 321 ATTGGCATGTAACGAATTTAAATTTTTTATAACATAGTGCAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAG
 401 ATAGTTATATGTATACAAGTCAAAGAACAACTTAACTATTGCTGCAACAGGTTTTTCTTAATGGTTATCCTCTTAAATAC
 481 ACCTGCTGGTACTTGGTGTGGTTAAATAGGAAAATTGTTATTAAATAAAGAATTTGTATGAACCTTTGCCAATGTTTTTG
 561 ACACGTTTTACTAATTATTGTTCCTGAATTATGTTTCTGGTTTTATCTATTTTTTGAGGTTTTTTTGTTTGCTTATTTTT
 641 CAAAACATTCATTTATTGTAATGTTTACTAGCGGACTAGTAAACAATAAAACATTGATTATTTAGCTTTATAATTCAGGT
 721 TTAGTGCTATTGTCATTGAACACTGGTATTTTCTGTATCATATAAAACATTAAAATTCAAATAATTATAAGCATTTGGCA
 801 AAAACAAGAGAAAAGAAACTTGCCATATTTTACAAGCTGCAATTTTAGAAAAGCTTTAACTTAATGATAGTTTTATCATT
 881 GTTTTCTTGTCCCAAACTTATCCAGGGCCATAGAAGTATGAATCTAATTAAAACAGAAATGGGAATTATTGCACAGAAAT
 961 GGGAAATAACTAATTTTAAATCAGTCAAATTGGCTTCTTATTAAATACAATAATTCTTATGAAAATCATAGTACCCTATT
1041 TTCAGACACAGCTGCCAGTTTACACATTTCTCAGTATCCTGAAAGGAAAAAAGTATAGCCCCACTTATACTATGTAAAAT
1121 TACCAATAAAATATTTTTATGACTACAGATTTTGCATTTTTGTTTACAACTATTTAAAGAGTTTTATGTTGTATTTAGAA
1201 TTTCAACCTAGAAACCACACAGTACTTAAATTCTCCTGGGGTCTCCTGCTTTCTCTTAACCATTTGCTTAATATATATCT
1281 ACCTAAAGGAGACTTCTGAATTGTAAATGAACTTAAAAATAGAATGTGGATGCAAAATATCACATAAGACATCATGATAA
1361 CATTTGAAGAAAAAATAAAACTGTAGACCCTAACAGTTGTGATATTTGGTGGTTTCATGTGGTAATGTAATTTTCTGTTT
1441 AATTACAGTACTTTTTACAGGCACAGTGGTACTGTCTTTTTTGTAAGATGCTAGTTGTGAAATACAATTAATTGCATACA
1521 GTAAAAGTCTGTGATTAAAACATTTATATACCTCATTCTTTAGTGTTGTTAAATGAAAAATTAAAATTTGTGTTTATTAT
1601 AAGATACTTTCAATGGAATACCAGCTAACCAGATATGTTCCTTTAAAACATGAATTTTTTTGTCTTATTCTGTTTTTAAC
1681 ATGTTTCAAATGTTTTATACATTTTTGGAGATAGTAAAAATTTAAAAATGTAATAGGGAAAATATTTAATTTTTAAGTCA
1761 AAAACTATGCTTTAAAGGAATTACATCTTATGATCAAATAACTTTCAGGATGTATTTTAAATGAGCTGCAAGAGAGAAAA
1841 ATCTGACAGGAGATGGGATTTTACCTGAATGGAGCATACTCATATTTCTACATAGGTGGGAAGATACTCATCTTTCTACA
1921 TAGACGGGAACACGGTGTAGCATGGAGATTAAGCGTGCTAACTGACACCTCATGTTTGAATCCTGTTGTAGAATGGAAAT
2001 GAGCTTAAATTACCCAAGCTTACTTTCCATCTATAAAACAGGGCTAATAATGGTAATCACATCTAATTTATAGGGTTTTT
2081 GGGAGGATTAAGTCAATCCGTGTAAAATTCTTAATTATCTGACACATACTGGTCACTCAGTAAATGTGAGCTTTTACCAT
2161 TGTTATAGGTAAAATCCCATTACAAAAATACAAAAATATTTTTTGTAACAGTTATTTTCCTGCCCTCTTGGATGACCTAA
2241 AGTAATAGTGTTTTATAGATTTCACTAAATTTTCAGTGTAATATCAGATGTTTTCTCTGGATGCAGAAAGACCATCTTTC
2321 CATAATTAAAGAACCTGGTGGGTGTGCACTATGAGATTGGAGAAATGAATTAAGTTGACTTGAAATTATTTTACTTTTAT
2401 TAATCACAGGTATCTCAACCTGCCTTTGTTTCACCCTACTTCAAGTACACTTCCACACCAGGAAAACAGACCCAAATTCC
2481 ATAAACAGAACTGACGTTAAAATATGCGAAAGATTCAGAACCTAGGTTTAGGGTACATGTTTTTCTCTGTTTCATGAACT
2561 TACAGTGTGGTTTGAGCACTGGGTTCTTTTAGCCAAATTCCATACAAAAAGAATTTGGATGTTTTCCAGCATTTATTACC
2641 TTACTTTGCTATAAGTAAGAGTGAAGATAGGCCGGGTGTGATGGCTCATGCCAGTAATCCCAGCACTTTGGGCTGAAGCA
2721 GGCAGATATTTTGAGCCCAGGACCAGCCTGGGCAACATGGTGAAAGCTCATCTCTATGAAAAAATTTGAATATACATATA
2801 TATATATATGTATATTTAAAAAGTGAATATAATTTGAGGCACAGAAGAATATTCTTAAAACCTTTTGTATTATACAATAG
2881 AAATAAAGGTTTTATTTTTATTAAATGCTTTCCTAAAATGATAGTGGATAATAGACAAAGTGAAAACATTTAAAAAGGAA
2961 GAGAAACTTCAGCCTTTCTAAGTTGATAGCATGTTTATTAACTTTTAGATAAAGATCCTTATAGACTGAAAGAATGTAGC
3041 CTCTGCATTAATGGTAAATGGTCTAGAAGTTTTCGTTTCCACTGAGGCTTCCGCCACTCGCTTTTTTAAACTTCCTGCTA
3121 TGGTTTGGATATGGTTTGTCCTCACCAAAACTCATGCTGAGGCCTGAGTCCCCAGTTTGATTGTGTTGGTAGGTGGTGCC
3201 TTTAAGAGGTGATTAGGTCATTGAGATGGATTAAAGGCTTTCTCATGAGGCTCAGTTAGTTCTGGAATGGATTCGCTCTT
3281 GCAGGAATGGATGAATTCTCACAAGAGTGGGTTGTTATGAAGTGAGGATGCTTCTTGTGTTCTGTTCTCTTTGCCCTCCT
3361 CAGTTCACCATCTGCTTTCCACCATGAGTTGAAGCAGCATGAGGCCCTCATCAGATGGGCTCCCTGATCTTGGACTCCTC
3441 AGCCTTTGGACTCATAAGCCAAAATAAATCTGTTTTCTTTATAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agACUGUCGGUCAAACUCUUGUu 5'
            | |:|| ||   ||| |||| 
Target 5' gaTAATAGACAAAGTGAAAACAt 3'
 2927 - 2949 129.00 -6.90
2 
miRNA  3' agacUGUCGGUCAAACUCUUGUu 5'
              |||  :||   |:||||| 
Target 5' ttctACA--TAG-ACGGGAACAc 3'
 1914 - 1933 126.00 -8.20
3 
miRNA  3' agACUGUCG-GUCAAACUCUUGuu 5'
            | ||||: ::||||||| ||  
Target 5' acTTACAGTGTGGTTTGAGCACtg 3'
 2558 - 2581 125.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30563115 1 COSMIC
COSN19736477 39 COSMIC
COSN31604113 65 COSMIC
COSN30454497 67 COSMIC
COSN30153168 80 COSMIC
COSN30166578 114 COSMIC
COSN5943485 123 COSMIC
COSN31582568 131 COSMIC
COSN31515307 142 COSMIC
COSN16603731 325 COSMIC
COSN29265466 386 COSMIC
COSN26555331 448 COSMIC
COSN26564238 480 COSMIC
COSN31585335 530 COSMIC
COSN26548124 543 COSMIC
COSN31543798 600 COSMIC
COSN31491013 778 COSMIC
COSN31570417 803 COSMIC
COSN1573009 925 COSMIC
COSN6536287 1402 COSMIC
COSN9560325 1413 COSMIC
COSN9560324 2085 COSMIC
COSN1573008 2388 COSMIC
COSN5943484 2469 COSMIC
COSN16302800 2912 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1347706221 2 dbSNP
rs775557728 5 dbSNP
rs765805791 7 dbSNP
rs769813724 13 dbSNP
rs935910553 21 dbSNP
rs746118433 22 dbSNP
rs1432701001 25 dbSNP
rs1298640772 27 dbSNP
rs1338460376 28 dbSNP
rs781431037 31 dbSNP
rs1415006551 36 dbSNP
rs1408150408 40 dbSNP
rs1167937642 41 dbSNP
rs1354559465 42 dbSNP
rs563396579 43 dbSNP
rs747464590 50 dbSNP
rs1295303791 58 dbSNP
rs899413211 61 dbSNP
rs1322427226 65 dbSNP
rs1238343206 67 dbSNP
rs1259489972 88 dbSNP
rs1353546970 89 dbSNP
rs1036400583 92 dbSNP
rs1280123733 96 dbSNP
rs1484874802 110 dbSNP
rs545193866 116 dbSNP
rs1257764925 122 dbSNP
rs1269693895 129 dbSNP
rs577925331 131 dbSNP
rs977359307 147 dbSNP
rs780537969 148 dbSNP
rs188744818 164 dbSNP
rs895929191 167 dbSNP
rs1432575376 177 dbSNP
rs1315019715 187 dbSNP
rs1380074155 193 dbSNP
rs541363317 195 dbSNP
rs937411349 196 dbSNP
rs1337583697 207 dbSNP
rs1241549027 211 dbSNP
rs986219226 224 dbSNP
rs573186926 230 dbSNP
rs1342490346 248 dbSNP
rs978577933 252 dbSNP
rs1256952098 260 dbSNP
rs1483405446 279 dbSNP
rs1335049140 284 dbSNP
rs1452175547 296 dbSNP
rs78446256 307 dbSNP
rs1194852556 321 dbSNP
rs1247853754 322 dbSNP
rs1440956977 333 dbSNP
rs1401544907 334 dbSNP
rs1333753997 335 dbSNP
rs1408748039 338 dbSNP
rs868155766 339 dbSNP
rs1394338560 340 dbSNP
rs1452341396 342 dbSNP
rs554706218 344 dbSNP
rs1419368565 349 dbSNP
rs1027797246 355 dbSNP
rs1166826104 357 dbSNP
rs1359505091 365 dbSNP
rs1461710490 371 dbSNP
rs1296630113 376 dbSNP
rs1472804968 380 dbSNP
rs1447534645 382 dbSNP
rs1303320189 387 dbSNP
rs1369515820 389 dbSNP
rs1237128167 394 dbSNP
rs1302468288 408 dbSNP
rs1367733706 410 dbSNP
rs1226277238 411 dbSNP
rs1249210902 412 dbSNP
rs995425792 413 dbSNP
rs1198651089 414 dbSNP
rs536659132 416 dbSNP
rs962252810 423 dbSNP
rs913142120 425 dbSNP
rs758660304 438 dbSNP
rs964996511 444 dbSNP
rs1019253364 463 dbSNP
rs1425651473 468 dbSNP
rs1443596047 480 dbSNP
rs1168619286 496 dbSNP
rs575621208 521 dbSNP
rs1238592129 530 dbSNP
rs1466335704 531 dbSNP
rs1325377020 544 dbSNP
rs1200245762 552 dbSNP
rs1392346557 562 dbSNP
rs147617419 564 dbSNP
rs373802629 571 dbSNP
rs1272121758 576 dbSNP
rs953782915 583 dbSNP
rs1294588143 585 dbSNP
rs1361726364 592 dbSNP
rs1213113102 601 dbSNP
rs1292997034 607 dbSNP
rs538832286 609 dbSNP
rs1218845179 616 dbSNP
rs1319638886 616 dbSNP
rs1210354169 627 dbSNP
rs1272036296 627 dbSNP
rs571537088 633 dbSNP
rs906862179 641 dbSNP
rs1029616187 658 dbSNP
rs1247158334 659 dbSNP
rs546888377 661 dbSNP
rs1265046240 663 dbSNP
rs1012650197 672 dbSNP
rs535048888 673 dbSNP
rs1054269469 680 dbSNP
rs1407105129 693 dbSNP
rs1311950893 699 dbSNP
rs567960650 700 dbSNP
rs1440403227 710 dbSNP
rs867907870 719 dbSNP
rs935846082 724 dbSNP
rs369006978 727 dbSNP
rs1015169096 730 dbSNP
rs1341488832 734 dbSNP
rs1400262279 743 dbSNP
rs1292243153 746 dbSNP
rs548658050 748 dbSNP
rs924493097 761 dbSNP
rs1005116959 763 dbSNP
rs1316330253 765 dbSNP
rs1287943783 775 dbSNP
rs1041607295 778 dbSNP
rs1161084814 787 dbSNP
rs1255595344 791 dbSNP
rs1473820356 798 dbSNP
rs1423627162 808 dbSNP
rs895831445 810 dbSNP
rs1057096381 819 dbSNP
rs545613685 820 dbSNP
rs911872764 847 dbSNP
rs753594303 857 dbSNP
rs1232077937 859 dbSNP
rs1361599266 863 dbSNP
rs905942877 864 dbSNP
rs1434428877 870 dbSNP
rs563310695 871 dbSNP
rs1338409136 881 dbSNP
rs1449756996 883 dbSNP
rs1284333052 884 dbSNP
rs1371947269 891 dbSNP
rs1199555208 894 dbSNP
rs1043314943 895 dbSNP
rs1453224538 896 dbSNP
rs1311301247 911 dbSNP
rs1289726096 916 dbSNP
rs1221782724 933 dbSNP
rs947208373 938 dbSNP
rs913174775 941 dbSNP
rs1232412325 943 dbSNP
rs1468623906 949 dbSNP
rs953459546 957 dbSNP
rs988707530 962 dbSNP
rs1454221772 966 dbSNP
rs943924216 972 dbSNP
rs1404777115 982 dbSNP
rs1373112766 988 dbSNP
rs1415863495 993 dbSNP
rs563198855 994 dbSNP
rs1334353447 1000 dbSNP
rs1275775709 1007 dbSNP
rs1353435526 1009 dbSNP
rs1439253906 1020 dbSNP
rs1333285484 1024 dbSNP
rs1377641635 1026 dbSNP
rs1163255952 1027 dbSNP
rs1233456777 1028 dbSNP
rs1467359481 1029 dbSNP
rs1272907484 1034 dbSNP
rs1344119013 1038 dbSNP
rs1300759753 1069 dbSNP
rs1220059110 1070 dbSNP
rs912216945 1078 dbSNP
rs1360599441 1100 dbSNP
rs1160911436 1108 dbSNP
rs529907330 1108 dbSNP
rs985141634 1109 dbSNP
rs1200675962 1110 dbSNP
rs962203251 1112 dbSNP
rs1015136351 1113 dbSNP
rs1192276697 1123 dbSNP
rs1379766277 1128 dbSNP
rs1478531763 1133 dbSNP
rs1172811095 1134 dbSNP
rs953963659 1139 dbSNP
rs1418261726 1143 dbSNP
rs1026723385 1160 dbSNP
rs1463727917 1166 dbSNP
rs1407033046 1169 dbSNP
rs2290539 1172 dbSNP
rs533137412 1176 dbSNP
rs963559645 1184 dbSNP
rs1015074064 1186 dbSNP
rs1332625194 1188 dbSNP
rs559631902 1191 dbSNP
rs960277238 1192 dbSNP
rs572476711 1210 dbSNP
rs970992851 1223 dbSNP
rs1258845628 1225 dbSNP
rs1208600332 1230 dbSNP
rs1036138448 1239 dbSNP
rs1270019876 1240 dbSNP
rs1452550596 1246 dbSNP
rs1192998739 1251 dbSNP
rs1266618385 1258 dbSNP
rs1476663465 1260 dbSNP
rs1001534209 1262 dbSNP
rs1172331746 1271 dbSNP
rs1423756161 1275 dbSNP
rs1023952485 1278 dbSNP
rs1013012875 1297 dbSNP
rs371158321 1306 dbSNP
rs1054618206 1322 dbSNP
rs1488698532 1338 dbSNP
rs905970360 1342 dbSNP
rs1317442767 1344 dbSNP
rs541322418 1350 dbSNP
rs1265415274 1356 dbSNP
rs999934985 1360 dbSNP
rs1316512783 1363 dbSNP
rs1043127060 1369 dbSNP
rs1011593190 1370 dbSNP
rs944600206 1371 dbSNP
rs1267295439 1374 dbSNP
rs891643343 1377 dbSNP
rs1357742065 1378 dbSNP
rs1205037604 1380 dbSNP
rs1284374680 1381 dbSNP
rs1489451783 1381 dbSNP
rs544747619 1388 dbSNP
rs1422876473 1389 dbSNP
rs757113145 1391 dbSNP
rs182469380 1400 dbSNP
rs562037993 1404 dbSNP
rs1473110920 1409 dbSNP
rs1157891374 1412 dbSNP
rs943997680 1417 dbSNP
rs931977045 1422 dbSNP
rs920644576 1426 dbSNP
rs1375134857 1427 dbSNP
rs189751990 1430 dbSNP
rs1314999031 1435 dbSNP
rs912474381 1438 dbSNP
rs973889150 1440 dbSNP
rs1428254727 1458 dbSNP
rs796230181 1462 dbSNP
rs1307643977 1463 dbSNP
rs932318738 1464 dbSNP
rs1356301949 1469 dbSNP
rs575630135 1473 dbSNP
rs940784684 1502 dbSNP
rs1482752966 1504 dbSNP
rs1198343492 1508 dbSNP
rs919565201 1519 dbSNP
rs970942357 1527 dbSNP
rs1159085201 1533 dbSNP
rs558044239 1543 dbSNP
rs961080118 1551 dbSNP
rs557015377 1552 dbSNP
rs1304766387 1554 dbSNP
rs1403027666 1555 dbSNP
rs908041551 1558 dbSNP
rs538795537 1561 dbSNP
rs1379839800 1566 dbSNP
rs958614560 1573 dbSNP
rs1303186455 1580 dbSNP
rs960601017 1582 dbSNP
rs56126783 1584 dbSNP
rs146913641 1587 dbSNP
rs1483292108 1590 dbSNP
rs1197530218 1611 dbSNP
rs553113020 1612 dbSNP
rs1235811067 1613 dbSNP
rs1421776121 1631 dbSNP
rs1179145067 1634 dbSNP
rs1266446065 1637 dbSNP
rs1001963733 1648 dbSNP
rs1178520397 1654 dbSNP
rs1485671325 1656 dbSNP
rs1465288158 1662 dbSNP
rs1168682612 1664 dbSNP
rs371375193 1667 dbSNP
rs1205801151 1672 dbSNP
rs1021551270 1679 dbSNP
rs1293411222 1692 dbSNP
rs1011619531 1698 dbSNP
rs890338268 1711 dbSNP
rs1460305081 1713 dbSNP
rs891878552 1714 dbSNP
rs1052918653 1721 dbSNP
rs149918360 1724 dbSNP
rs891062578 1730 dbSNP
rs899149033 1734 dbSNP
rs1199219198 1737 dbSNP
rs1297129849 1739 dbSNP
rs1212239900 1741 dbSNP
rs1037729288 1745 dbSNP
rs1049686276 1749 dbSNP
rs1360846414 1761 dbSNP
rs181127654 1763 dbSNP
rs907974546 1765 dbSNP
rs919612448 1767 dbSNP
rs1191729357 1787 dbSNP
rs1038001428 1791 dbSNP
rs949587339 1797 dbSNP
rs916795880 1798 dbSNP
rs77883571 1802 dbSNP
rs569695063 1809 dbSNP
rs908282196 1810 dbSNP
rs1340256728 1813 dbSNP
rs958336314 1814 dbSNP
rs1356145969 1818 dbSNP
rs983646723 1828 dbSNP
rs1341847840 1836 dbSNP
rs1033064661 1838 dbSNP
rs1428062628 1839 dbSNP
rs1319908532 1850 dbSNP
rs1223633343 1857 dbSNP
rs1265846652 1863 dbSNP
rs1487813179 1864 dbSNP
rs75405117 1879 dbSNP
rs1265529701 1883 dbSNP
rs751421238 1889 dbSNP
rs1442973756 1890 dbSNP
rs541417059 1903 dbSNP
rs1478270353 1905 dbSNP
rs928771796 1907 dbSNP
rs967067324 1909 dbSNP
rs139145262 1920 dbSNP
rs970681660 1925 dbSNP
rs73127421 1932 dbSNP
rs866755587 1933 dbSNP
rs762673890 1934 dbSNP
rs1362137128 1944 dbSNP
rs547228046 1954 dbSNP
rs996479414 1955 dbSNP
rs1194106454 1964 dbSNP
rs190719233 1969 dbSNP
rs1352727988 1970 dbSNP
rs1214268716 1982 dbSNP
rs1315095146 1987 dbSNP
rs1031699881 1999 dbSNP
rs1008707218 2004 dbSNP
rs1235834918 2006 dbSNP
rs890976882 2011 dbSNP
rs1484248123 2013 dbSNP
rs1182962672 2031 dbSNP
rs376781030 2042 dbSNP
rs1380154376 2049 dbSNP
rs996776651 2053 dbSNP
rs561819948 2057 dbSNP
rs557521832 2063 dbSNP
rs372465847 2070 dbSNP
rs1314119273 2072 dbSNP
rs865959720 2074 dbSNP
rs1447176596 2084 dbSNP
rs1356948848 2086 dbSNP
rs898409979 2092 dbSNP
rs2406568 2094 dbSNP
rs939652252 2099 dbSNP
rs79463144 2100 dbSNP
rs1311230055 2108 dbSNP
rs1351077209 2119 dbSNP
rs563385475 2127 dbSNP
rs1276693187 2134 dbSNP
rs1314026030 2141 dbSNP
rs1200352743 2150 dbSNP
rs1237625272 2154 dbSNP
rs1350589869 2159 dbSNP
rs1181007548 2164 dbSNP
rs1165495322 2165 dbSNP
rs891697564 2179 dbSNP
rs1477872740 2183 dbSNP
rs916715204 2184 dbSNP
rs1055315190 2191 dbSNP
rs1422706994 2191 dbSNP
rs864291 2197 dbSNP
rs540782944 2199 dbSNP
rs978357876 2207 dbSNP
rs116915417 2224 dbSNP
rs553125723 2225 dbSNP
rs1435405595 2232 dbSNP
rs949032511 2236 dbSNP
rs1489078274 2237 dbSNP
rs914814669 2239 dbSNP
rs990133840 2242 dbSNP
rs150756283 2250 dbSNP
rs1257539492 2251 dbSNP
rs1316093197 2255 dbSNP
rs1356844590 2256 dbSNP
rs1029220550 2257 dbSNP
rs1290656537 2266 dbSNP
rs747595490 2272 dbSNP
rs963593568 2278 dbSNP
rs1031606306 2283 dbSNP
rs1239313622 2287 dbSNP
rs780404212 2294 dbSNP
rs1197274884 2300 dbSNP
rs1248801339 2308 dbSNP
rs1478827139 2322 dbSNP
rs1016193840 2324 dbSNP
rs1422315893 2332 dbSNP
rs1172735112 2334 dbSNP
rs1004844037 2338 dbSNP
rs1321396799 2339 dbSNP
rs1332566065 2342 dbSNP
rs186774119 2343 dbSNP
rs1277742123 2348 dbSNP
rs1046455916 2349 dbSNP
rs1220619862 2351 dbSNP
rs763084414 2357 dbSNP
rs895243636 2358 dbSNP
rs1390771625 2372 dbSNP
rs1368164552 2379 dbSNP
rs1055665329 2388 dbSNP
rs574208699 2389 dbSNP
rs936857132 2392 dbSNP
rs925493119 2397 dbSNP
rs1476632299 2402 dbSNP
rs1042610302 2406 dbSNP
rs997074196 2410 dbSNP
rs1365020888 2412 dbSNP
rs898442446 2418 dbSNP
rs1332254420 2421 dbSNP
rs1303546127 2422 dbSNP
rs1297353654 2433 dbSNP
rs555760184 2439 dbSNP
rs912881971 2440 dbSNP
rs780235760 2443 dbSNP
rs954583174 2444 dbSNP
rs1286408919 2458 dbSNP
rs886786450 2467 dbSNP
rs1239961431 2471 dbSNP
rs1056500844 2481 dbSNP
rs1284304254 2482 dbSNP
rs537794521 2493 dbSNP
rs974945432 2495 dbSNP
rs1441278369 2496 dbSNP
rs904933683 2505 dbSNP
rs963208011 2506 dbSNP
rs773224087 2507 dbSNP
rs1044598291 2508 dbSNP
rs1197880455 2509 dbSNP
rs948882687 2524 dbSNP
rs1016141213 2533 dbSNP
rs535031073 2537 dbSNP
rs1054649902 2539 dbSNP
rs779355236 2540 dbSNP
rs1394295483 2541 dbSNP
rs11181355 2545 dbSNP
rs1237973088 2550 dbSNP
rs1384257162 2554 dbSNP
rs1446668113 2580 dbSNP
rs1013593618 2584 dbSNP
rs987201014 2586 dbSNP
rs142107082 2592 dbSNP
rs955515842 2599 dbSNP
rs1240762016 2606 dbSNP
rs921334538 2608 dbSNP
rs747796773 2609 dbSNP
rs1319035644 2611 dbSNP
rs962553481 2619 dbSNP
rs539443326 2628 dbSNP
rs904016720 2629 dbSNP
rs1382985935 2634 dbSNP
rs1042557575 2636 dbSNP
rs1420590899 2637 dbSNP
rs1288673550 2639 dbSNP
rs1377347214 2651 dbSNP
rs1466930520 2659 dbSNP
rs182161243 2664 dbSNP
rs1004139421 2668 dbSNP
rs115646103 2672 dbSNP
rs529057260 2673 dbSNP
rs1329836495 2674 dbSNP
rs891391470 2675 dbSNP
rs1392403665 2677 dbSNP
rs1193225919 2681 dbSNP
rs568293412 2684 dbSNP
rs534629626 2687 dbSNP
rs1230577159 2690 dbSNP
rs549799298 2692 dbSNP
rs921634535 2703 dbSNP
rs1003608619 2712 dbSNP
rs1461653225 2723 dbSNP
rs904965444 2725 dbSNP
rs531464766 2726 dbSNP
rs974511807 2729 dbSNP
rs1481571777 2736 dbSNP
rs941791078 2737 dbSNP
rs1010584382 2738 dbSNP
rs1266382458 2749 dbSNP
rs1264735071 2751 dbSNP
rs909020306 2758 dbSNP
rs1430088398 2761 dbSNP
rs1465109058 2766 dbSNP
rs1168620325 2774 dbSNP
rs1356851647 2785 dbSNP
rs1462926983 2793 dbSNP
rs1003120437 2795 dbSNP
rs564045276 2796 dbSNP
rs1054516177 2797 dbSNP
rs934956351 2806 dbSNP
rs983295750 2806 dbSNP
rs950578050 2808 dbSNP
rs141305278 2810 dbSNP
rs746740097 2810 dbSNP
rs760981497 2810 dbSNP
rs924847515 2810 dbSNP
rs1487354823 2812 dbSNP
rs1051128526 2814 dbSNP
rs754423894 2819 dbSNP
rs1225013299 2823 dbSNP
rs1269955921 2823 dbSNP
rs959393106 2826 dbSNP
rs1191662108 2834 dbSNP
rs1421706232 2847 dbSNP
rs1429664331 2857 dbSNP
rs1034124213 2861 dbSNP
rs1367105240 2863 dbSNP
rs1426869601 2864 dbSNP
rs933964428 2865 dbSNP
rs1365869253 2867 dbSNP
rs1398980068 2869 dbSNP
rs1286651154 2873 dbSNP
rs1270872897 2876 dbSNP
rs1229636175 2877 dbSNP
rs199532044 2897 dbSNP
rs2406567 2912 dbSNP
rs533167728 2917 dbSNP
rs1319850225 2929 dbSNP
rs61940200 2932 dbSNP
rs1292203224 2937 dbSNP
rs1408823867 2938 dbSNP
rs1214679236 2940 dbSNP
rs962753346 2941 dbSNP
rs1021050747 2966 dbSNP
rs909719776 2967 dbSNP
rs139827747 2968 dbSNP
rs569007468 2973 dbSNP
rs1446958038 2980 dbSNP
rs574146960 2983 dbSNP
rs1335085351 2992 dbSNP
rs1380039784 2998 dbSNP
rs1009699407 3008 dbSNP
rs1156429845 3009 dbSNP
rs145931569 3010 dbSNP
rs891339143 3014 dbSNP
rs951305824 3018 dbSNP
rs1380554917 3019 dbSNP
rs1035330810 3020 dbSNP
rs1454480411 3021 dbSNP
rs1352645741 3022 dbSNP
rs1222292168 3027 dbSNP
rs1286517532 3036 dbSNP
rs76646834 3038 dbSNP
rs969474489 3041 dbSNP
rs17091009 3046 dbSNP
rs1370837372 3052 dbSNP
rs1184711585 3054 dbSNP
rs1192073190 3058 dbSNP
rs900154588 3061 dbSNP
rs1179314578 3063 dbSNP
rs1039135040 3074 dbSNP
rs941729959 3075 dbSNP
rs1400906265 3080 dbSNP
rs1010615514 3083 dbSNP
rs1403212686 3084 dbSNP
rs1470927181 3087 dbSNP
rs893556694 3092 dbSNP
rs1375878042 3093 dbSNP
rs114275027 3099 dbSNP
rs1374399367 3100 dbSNP
rs529015392 3103 dbSNP
rs1218839544 3107 dbSNP
rs750235361 3116 dbSNP
rs1197482273 3117 dbSNP
rs929119284 3119 dbSNP
rs917776775 3120 dbSNP
rs144340715 3134 dbSNP
rs1456813309 3136 dbSNP
rs201912476 3138 dbSNP
rs1184484596 3140 dbSNP
rs1233780569 3141 dbSNP
rs1051800096 3144 dbSNP
rs1247020019 3159 dbSNP
rs1426603122 3159 dbSNP
rs1033662574 3161 dbSNP
rs1176509852 3169 dbSNP
rs979416029 3176 dbSNP
rs968071444 3177 dbSNP
rs1020998198 3207 dbSNP
rs1385212711 3214 dbSNP
rs1354861678 3217 dbSNP
rs1009648775 3224 dbSNP
rs200330208 3226 dbSNP
rs891288876 3228 dbSNP
rs1030274153 3237 dbSNP
rs997091731 3242 dbSNP
rs1277619123 3246 dbSNP
rs934230104 3253 dbSNP
rs750381294 3262 dbSNP
rs1198029234 3265 dbSNP
rs577790224 3269 dbSNP
rs1274172829 3272 dbSNP
rs1451332392 3273 dbSNP
rs190796121 3274 dbSNP
rs941464937 3275 dbSNP
rs1490735711 3277 dbSNP
rs765006726 3281 dbSNP
rs73127418 3291 dbSNP
rs1474405264 3301 dbSNP
rs982635800 3304 dbSNP
rs1424932350 3306 dbSNP
rs780698256 3318 dbSNP
rs1404479615 3319 dbSNP
rs929068622 3328 dbSNP
rs1367743146 3329 dbSNP
rs929817498 3332 dbSNP
rs1405745432 3333 dbSNP
rs927791276 3335 dbSNP
rs1324709240 3340 dbSNP
rs1230276108 3341 dbSNP
rs1443854203 3342 dbSNP
rs982447022 3343 dbSNP
rs776806096 3349 dbSNP
rs937915105 3360 dbSNP
rs185471874 3370 dbSNP
rs1222724693 3380 dbSNP
rs1260464345 3383 dbSNP
rs77902404 3389 dbSNP
rs549903831 3395 dbSNP
rs1195245172 3397 dbSNP
rs989101352 3399 dbSNP
rs968019559 3404 dbSNP
rs180969300 3410 dbSNP
rs957809505 3412 dbSNP
rs1161486494 3419 dbSNP
rs370084605 3420 dbSNP
rs13404 3421 dbSNP
rs1223234506 3424 dbSNP
rs1425557520 3428 dbSNP
rs1158211099 3429 dbSNP
rs1382883033 3433 dbSNP
rs913940817 3434 dbSNP
rs1319045481 3438 dbSNP
rs1340457189 3446 dbSNP
rs1289940067 3454 dbSNP
rs758491199 3455 dbSNP
rs988175071 3457 dbSNP
rs796831787 3474 dbSNP
rs955668292 3476 dbSNP
rs1259715190 3481 dbSNP
rs188021011 3482 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10138.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000327791.4 | 3UTR | AACAACUUAACUAUUGCUGCAACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
71 hsa-miR-7156-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071889 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT089448 STAMBP STAM binding protein 2 2
MIRT135061 ADSS adenylosuccinate synthase 2 4
MIRT279713 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT314693 TMEM167A transmembrane protein 167A 2 2
MIRT405292 ARF1 ADP ribosylation factor 1 2 2
MIRT449941 IGF1 insulin like growth factor 1 2 2
MIRT450241 TRIM66 tripartite motif containing 66 2 2
MIRT450266 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450683 RPN2 ribophorin II 2 2
MIRT465595 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT479853 CCDC6 coiled-coil domain containing 6 2 2
MIRT487158 IFRD1 interferon related developmental regulator 1 2 6
MIRT506338 NUP54 nucleoporin 54 2 4
MIRT514596 NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 2 4
MIRT525340 TUBGCP4 tubulin gamma complex associated protein 4 2 2
MIRT528088 UCHL3 ubiquitin C-terminal hydrolase L3 2 2
MIRT529251 TRIM4 tripartite motif containing 4 2 4
MIRT552786 YAF2 YY1 associated factor 2 2 2
MIRT554463 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT557667 GATA6 GATA binding protein 6 2 2
MIRT565808 SDCCAG3 serologically defined colon cancer antigen 3 2 2
MIRT566342 POLDIP2 DNA polymerase delta interacting protein 2 2 2
MIRT567793 DEK DEK proto-oncogene 2 2
MIRT572456 ZNF516 zinc finger protein 516 2 2
MIRT572583 HGFAC HGF activator 2 2
MIRT574650 LMAN2 lectin, mannose binding 2 2 2
MIRT608165 ERBB2 erb-b2 receptor tyrosine kinase 2 2 2
MIRT612019 PAK6 p21 (RAC1) activated kinase 6 2 8
MIRT616033 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT621925 SYAP1 synapse associated protein 1 2 4
MIRT624611 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT635086 AKIRIN1 akirin 1 2 2
MIRT636154 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT638256 SIX1 SIX homeobox 1 2 2
MIRT638485 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT639396 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641787 USP32 ubiquitin specific peptidase 32 2 2
MIRT642300 FPR1 formyl peptide receptor 1 2 2
MIRT644555 SPOP speckle type BTB/POZ protein 2 2
MIRT645901 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT657250 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT659907 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT665371 XIAP X-linked inhibitor of apoptosis 2 2
MIRT667268 NAV1 neuron navigator 1 2 2
MIRT669215 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT674142 ZNF793 zinc finger protein 793 2 2
MIRT698726 STX6 syntaxin 6 2 4
MIRT699789 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT700291 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT710005 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT710408 YTHDC1 YTH domain containing 1 2 2
MIRT710570 TNPO1 transportin 1 2 2
MIRT711055 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT711281 PSME3 proteasome activator subunit 3 2 2
MIRT711385 PLEKHG4B pleckstrin homology and RhoGEF domain containing G4B 2 2
MIRT712718 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713289 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 2 2
MIRT715650 USP6NL USP6 N-terminal like 2 2
MIRT716168 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716757 TRABD2A TraB domain containing 2A 2 2
MIRT718362 SOX1 SRY-box 1 2 2
MIRT719672 SPDYE1 speedy/RINGO cell cycle regulator family member E1 2 2
MIRT720828 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT722185 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 2 2
MIRT722400 BCAS2 BCAS2, pre-mRNA processing factor 2 2
MIRT723461 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT724073 NCKAP1L NCK associated protein 1 like 2 2
MIRT724595 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT725235 PDE1B phosphodiesterase 1B 2 2
MIRT725585 CDH7 cadherin 7 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-7156 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-7156-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-7156-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-7156-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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