pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol UEVLD   
Synonyms ATTP, UEV3
Description UEV and lactate/malate dehyrogenase domains
Transcript NM_018314   
Other Transcripts NM_001040697   
Expression
Putative miRNA Targets on UEVLD
3'UTR of UEVLD
(miRNA target sites are highlighted)
>UEVLD|NM_018314|3'UTR
   1 ATAGTGAAGTGTTTTTAAGTTTGCCTTGCATCCTTGGAACCAATGGAGTATCTGAAGTTATCAAAACCACACTGAAAGAA
  81 GATACAGTTACTGAGAAACTCCAAAGCAGTGCATCCTCAATCCACAGTCTCCAACAACAGTTAAAACTTTGATTCTCAAA
 161 TGCAATTTGAGAGGCTGGACTTCTACCTAAAGGGAAAAGTCATTTAATTTTACCTATATATAGGTTTGAGGATTTCTGTA
 241 TCCTGCTACTTACTTTTACAAACTGCTTGGTTAAAGTAGAGGGTTTCTTGATTAGCTTTGTGATGTAAATCCTTAAGGAG
 321 TTATACAAGGAGGGGAAAAATTAATTTTATTTGGGGTTCTTGAGATATCTATGCTGTTCTTTAAATCTACAGCAGGGGTA
 401 AACATTCATCTGCAGTGTGCATCAATTTAAATCATATATCCTAAACTAAAAGCACAATTCATACTTCGGGAATATTTTAT
 481 AAGTAATATATCTTTAAAAGAAAATTACCCTTTGACTTTTATAATCAACATAAGTTCCAGGCCCAGTATGGATTTACAAA
 561 ATCTGTGTCAGTTGTACATTCACAGGATCCACAGCTTAAGTTACTAATGTTTCTTGTGTAAAATCCTGTTGGTAGTAATA
 641 GTAAAGCATTGTATTTCCCTTCTTCAAATTAATTACCTACCAAAAAATGGAAAAGAATTTTACATGCACTTTAAAATAGT
 721 AAAATGGAAAGTGAATTTTTAAAATATATGCATTAAAAGTTTACTTTAATTTCCAGTGGGACTTCCTTTATGAAATTTTC
 801 CATAACCTCTTCCTGGAGTATTACAAGATCTCCAACATCTCATAAACTAATTGTGATATTAGTGGAACCATAAGCAAATA
 881 TATATTTTTAGTGGAAATAGATTATGAATGAAAGCCAAGCACCTTACTTTAAAGCCAAAATATGAGATTTTCATTAAAAA
 961 CATTGGTCATAATAGGGAGAGGTTTTTTATTTGTTCTGAGCAAATCCTTTAACCTCTCCTGATGATACAGTTCAGAGTAC
1041 ACACACTTTGGTGATGGATCAAGAGCAAT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||  ||| ||||||| 
Target 5' tcCTTTATG-AAATTTTc 3'
784 - 800 151.00 -6.60
2
miRNA  3' aggACC-UACGUUUAAAAu 5'
             ||| | |::|||||| 
Target 5' aaaTGGAAAGTGAATTTTt 3'
722 - 740 139.00 -5.30
3
miRNA  3' aggACCUACGUUUAAAAu 5'
             ||||   :|||||| 
Target 5' aaaTGGAAAAGAATTTTa 3'
685 - 702 135.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM3397599 2 COSMIC
COSM7403102 28 COSMIC
COSM2092695 32 COSMIC
COSM6572828 52 COSMIC
COSM925662 59 COSMIC
COSM8415031 64 COSMIC
COSM4465683 131 COSMIC
COSN8437864 181 COSMIC
COSN31558835 210 COSMIC
COSN5258944 220 COSMIC
COSN30508184 267 COSMIC
COSN30117032 281 COSMIC
COSN30129165 287 COSMIC
COSN32058227 519 COSMIC
COSN15692234 1076 COSMIC
COSN25614937 1532 COSMIC
COSN29153077 2090 COSMIC
COSN1522914 2098 COSMIC
COSN22088848 2819 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1418415445 2 dbSNP
rs758308521 4 dbSNP
rs1422129975 8 dbSNP
rs1482714587 12 dbSNP
rs138493180 14 dbSNP
rs1177977308 17 dbSNP
rs765037651 25 dbSNP
rs1236771935 33 dbSNP
rs373226564 40 dbSNP
rs776725250 43 dbSNP
rs767790676 44 dbSNP
rs952172110 45 dbSNP
rs1169262180 47 dbSNP
rs1220271656 48 dbSNP
rs1319368118 56 dbSNP
rs1466939018 58 dbSNP
rs147462573 61 dbSNP
rs974856202 62 dbSNP
rs1012447596 68 dbSNP
rs375386050 69 dbSNP
rs771433671 70 dbSNP
rs1450316414 71 dbSNP
rs1031163010 78 dbSNP
rs137861180 78 dbSNP
rs763394788 81 dbSNP
rs773570831 83 dbSNP
rs780273880 87 dbSNP
rs868557144 87 dbSNP
rs201262176 91 dbSNP
rs748592484 93 dbSNP
rs1293612922 94 dbSNP
rs201635931 98 dbSNP
rs1019020373 99 dbSNP
rs768472705 102 dbSNP
rs1378634057 107 dbSNP
rs1195953458 110 dbSNP
rs746496039 114 dbSNP
rs779461595 115 dbSNP
rs758305119 123 dbSNP
rs1041404770 126 dbSNP
rs745804785 127 dbSNP
rs1487108390 128 dbSNP
rs199745123 129 dbSNP
rs1460301790 130 dbSNP
rs1215810121 132 dbSNP
rs1293667710 134 dbSNP
rs1352604703 135 dbSNP
rs1009171786 138 dbSNP
rs1238589199 140 dbSNP
rs757038575 144 dbSNP
rs1483252780 147 dbSNP
rs753686352 154 dbSNP
rs756263934 156 dbSNP
rs767700886 157 dbSNP
rs755189668 158 dbSNP
rs538141198 163 dbSNP
rs766384684 165 dbSNP
rs377239638 169 dbSNP
rs773852041 173 dbSNP
rs373743427 175 dbSNP
rs1468056137 177 dbSNP
rs1435780577 181 dbSNP
rs368805291 184 dbSNP
rs1055167182 186 dbSNP
rs1287190953 187 dbSNP
rs1197149978 191 dbSNP
rs777177233 193 dbSNP
rs768382560 194 dbSNP
rs1431606506 195 dbSNP
rs746662681 195 dbSNP
rs1279885003 197 dbSNP
rs746267540 197 dbSNP
rs775005532 198 dbSNP
rs771486182 199 dbSNP
rs940607453 204 dbSNP
rs907880686 207 dbSNP
rs984792465 216 dbSNP
rs570620109 217 dbSNP
rs1267766319 226 dbSNP
rs952118616 228 dbSNP
rs1479293923 238 dbSNP
rs1192716155 240 dbSNP
rs1425693901 244 dbSNP
rs1001871461 249 dbSNP
rs916689286 252 dbSNP
rs1313170031 259 dbSNP
rs1397361002 260 dbSNP
rs1156901163 265 dbSNP
rs906316603 266 dbSNP
rs546138364 270 dbSNP
rs764173801 287 dbSNP
rs1046127597 305 dbSNP
rs950223581 309 dbSNP
rs112143982 324 dbSNP
rs1438945009 327 dbSNP
rs1373106445 328 dbSNP
rs1035603282 329 dbSNP
rs760837802 333 dbSNP
rs1288806390 334 dbSNP
rs1355171293 337 dbSNP
rs1362978405 357 dbSNP
rs1290506300 368 dbSNP
rs1048024666 371 dbSNP
rs1296947588 375 dbSNP
rs930842214 379 dbSNP
rs1247048725 383 dbSNP
rs920613730 385 dbSNP
rs566934803 389 dbSNP
rs1382100835 394 dbSNP
rs964723594 397 dbSNP
rs1363861110 407 dbSNP
rs138841074 412 dbSNP
rs1407260556 412 dbSNP
rs1354260419 413 dbSNP
rs1167364917 415 dbSNP
rs1422234145 421 dbSNP
rs911992676 423 dbSNP
rs1312010353 433 dbSNP
rs772224361 434 dbSNP
rs1245960183 439 dbSNP
rs1313699821 441 dbSNP
rs1353709906 448 dbSNP
rs987545888 464 dbSNP
rs966535748 467 dbSNP
rs193223638 468 dbSNP
rs1050154328 470 dbSNP
rs188831864 478 dbSNP
rs774079096 479 dbSNP
rs1436946397 481 dbSNP
rs957985003 483 dbSNP
rs1196542757 488 dbSNP
rs1033601798 489 dbSNP
rs901637933 524 dbSNP
rs550812486 530 dbSNP
rs1383436218 543 dbSNP
rs1214276643 544 dbSNP
rs940613195 545 dbSNP
rs1265763517 548 dbSNP
rs770834793 550 dbSNP
rs1419074793 561 dbSNP
rs184273912 563 dbSNP
rs150138141 571 dbSNP
rs930623649 576 dbSNP
rs916592614 577 dbSNP
rs540408893 579 dbSNP
rs939432178 585 dbSNP
rs1246357497 594 dbSNP
rs1047891467 608 dbSNP
rs930790144 612 dbSNP
rs1284366057 615 dbSNP
rs928150092 651 dbSNP
rs1275761984 652 dbSNP
rs1399870368 654 dbSNP
rs752299731 658 dbSNP
rs920884444 659 dbSNP
rs1202047677 679 dbSNP
rs1456757693 680 dbSNP
rs1444134975 682 dbSNP
rs1039274443 683 dbSNP
rs1241655040 690 dbSNP
rs1474545478 691 dbSNP
rs1173158770 700 dbSNP
rs1424729077 704 dbSNP
rs773010893 717 dbSNP
rs966938240 727 dbSNP
rs943378217 729 dbSNP
rs13377281 741 dbSNP
rs1174826173 746 dbSNP
rs1171743791 748 dbSNP
rs1022576207 752 dbSNP
rs1421505010 767 dbSNP
rs1334243426 769 dbSNP
rs1193072559 784 dbSNP
rs1427812786 786 dbSNP
rs1279721551 790 dbSNP
rs1268024724 800 dbSNP
rs1222674503 815 dbSNP
rs911874233 824 dbSNP
rs571877648 826 dbSNP
rs553550666 853 dbSNP
rs989748243 856 dbSNP
rs749249446 859 dbSNP
rs956993797 864 dbSNP
rs1279802087 873 dbSNP
rs4757670 880 dbSNP
rs1480281801 881 dbSNP
rs995937312 884 dbSNP
rs1379803280 903 dbSNP
rs530856525 904 dbSNP
rs901625463 919 dbSNP
rs913981803 943 dbSNP
rs1004698629 946 dbSNP
rs886293381 958 dbSNP
rs1299582234 960 dbSNP
rs879224422 961 dbSNP
rs1404011655 964 dbSNP
rs989314398 965 dbSNP
rs1048936058 966 dbSNP
rs1319569648 968 dbSNP
rs1332648279 972 dbSNP
rs930567961 975 dbSNP
rs1278922397 989 dbSNP
rs895108936 995 dbSNP
rs1218911792 998 dbSNP
rs957880820 999 dbSNP
rs1055572893 1006 dbSNP
rs1034039256 1014 dbSNP
rs1208329203 1021 dbSNP
rs939443879 1027 dbSNP
rs1434138602 1028 dbSNP
rs1379007129 1049 dbSNP
rs980682406 1053 dbSNP
rs769524273 1060 dbSNP
rs978265024 1077 dbSNP
rs1332148164 1079 dbSNP
rs1304127183 1094 dbSNP
rs755713134 1098 dbSNP
rs1385451245 1100 dbSNP
rs1392572587 1110 dbSNP
rs1367264069 1114 dbSNP
rs1332478681 1117 dbSNP
rs12222154 1120 dbSNP
rs1328037937 1123 dbSNP
rs780872813 1127 dbSNP
rs1374555962 1128 dbSNP
rs1170024914 1146 dbSNP
rs1242313656 1149 dbSNP
rs567809315 1153 dbSNP
rs192322377 1156 dbSNP
rs1358881301 1158 dbSNP
rs954317256 1158 dbSNP
rs1466663353 1164 dbSNP
rs1003972156 1167 dbSNP
rs974845341 1175 dbSNP
rs141758888 1176 dbSNP
rs1236789798 1186 dbSNP
rs1459475796 1191 dbSNP
rs1026732768 1194 dbSNP
rs1019088576 1196 dbSNP
rs556204541 1206 dbSNP
rs1380350687 1207 dbSNP
rs1431371739 1211 dbSNP
rs995033251 1221 dbSNP
rs754647096 1226 dbSNP
rs886237511 1237 dbSNP
rs1027445410 1252 dbSNP
rs1039712466 1253 dbSNP
rs1458786714 1269 dbSNP
rs1255803333 1270 dbSNP
rs776213101 1286 dbSNP
rs750799304 1293 dbSNP
rs1382072568 1299 dbSNP
rs1394367868 1299 dbSNP
rs994708796 1314 dbSNP
rs895087119 1324 dbSNP
rs890462477 1337 dbSNP
rs764618981 1338 dbSNP
rs1199778067 1343 dbSNP
rs1243079836 1350 dbSNP
rs1482613445 1359 dbSNP
rs1051750788 1373 dbSNP
rs1423999322 1384 dbSNP
rs906551792 1388 dbSNP
rs1449522891 1392 dbSNP
rs1421146863 1405 dbSNP
rs555889270 1422 dbSNP
rs1467018209 1439 dbSNP
rs945379366 1447 dbSNP
rs914014366 1453 dbSNP
rs1374928806 1455 dbSNP
rs1304651242 1456 dbSNP
rs1380026937 1467 dbSNP
rs765527802 1467 dbSNP
rs936513001 1472 dbSNP
rs1445464905 1478 dbSNP
rs1342698198 1485 dbSNP
rs926452772 1490 dbSNP
rs377166325 1492 dbSNP
rs945447556 1498 dbSNP
rs981097755 1500 dbSNP
rs1377142943 1501 dbSNP
rs1212909571 1506 dbSNP
rs544485111 1511 dbSNP
rs1330996072 1512 dbSNP
rs757726484 1514 dbSNP
rs970636061 1516 dbSNP
rs1404359424 1519 dbSNP
rs1024889019 1534 dbSNP
rs982483481 1544 dbSNP
rs1194098182 1545 dbSNP
rs577232469 1553 dbSNP
rs1431335676 1554 dbSNP
rs1178200514 1558 dbSNP
rs1026749038 1561 dbSNP
rs1158992773 1562 dbSNP
rs558918624 1564 dbSNP
rs932879001 1571 dbSNP
rs899332313 1576 dbSNP
rs1017739603 1588 dbSNP
rs1008134310 1589 dbSNP
rs186817285 1590 dbSNP
rs1274598149 1621 dbSNP
rs890755023 1622 dbSNP
rs566589953 1630 dbSNP
rs768156179 1634 dbSNP
rs1221390163 1642 dbSNP
rs1051949917 1645 dbSNP
rs754365781 1646 dbSNP
rs945410498 1653 dbSNP
rs892436280 1654 dbSNP
rs555041584 1655 dbSNP
rs921539848 1657 dbSNP
rs1216937980 1661 dbSNP
rs1198265611 1662 dbSNP
rs1245890298 1663 dbSNP
rs1053815831 1667 dbSNP
rs536349129 1669 dbSNP
rs1485615181 1684 dbSNP
rs1192808033 1685 dbSNP
rs1425803886 1686 dbSNP
rs936727986 1699 dbSNP
rs1382290371 1707 dbSNP
rs1420518691 1708 dbSNP
rs926455073 1710 dbSNP
rs1242755019 1712 dbSNP
rs10734260 1723 dbSNP
rs1279338299 1724 dbSNP
rs537422951 1726 dbSNP
rs1342505714 1727 dbSNP
rs75071633 1728 dbSNP
rs1395564815 1740 dbSNP
rs1374748649 1744 dbSNP
rs1298806457 1745 dbSNP
rs1306411724 1746 dbSNP
rs1355289944 1746 dbSNP
rs368909643 1746 dbSNP
rs562726509 1746 dbSNP
rs59281820 1746 dbSNP
rs1421448077 1747 dbSNP
rs1378189521 1748 dbSNP
rs1157807100 1752 dbSNP
rs1044938267 1755 dbSNP
rs1472900778 1768 dbSNP
rs1176759895 1771 dbSNP
rs1369882696 1776 dbSNP
rs532401229 1779 dbSNP
rs61884683 1780 dbSNP
rs1162823918 1781 dbSNP
rs1411912837 1783 dbSNP
rs1407348194 1795 dbSNP
rs1165919641 1802 dbSNP
rs950508073 1803 dbSNP
rs34226030 1804 dbSNP
rs917863226 1805 dbSNP
rs1181919815 1809 dbSNP
rs1483051872 1814 dbSNP
rs1264520754 1823 dbSNP
rs1219340253 1824 dbSNP
rs547020831 1829 dbSNP
rs982666888 1830 dbSNP
rs1283154926 1831 dbSNP
rs951045846 1841 dbSNP
rs1229716600 1842 dbSNP
rs1273556772 1846 dbSNP
rs959300535 1847 dbSNP
rs1196637497 1850 dbSNP
rs919553302 1870 dbSNP
rs1438414381 1872 dbSNP
rs1283940331 1875 dbSNP
rs974238885 1882 dbSNP
rs1235868332 1890 dbSNP
rs1473878538 1891 dbSNP
rs1210841814 1895 dbSNP
rs1358697882 1897 dbSNP
rs377051556 1899 dbSNP
rs140423444 1901 dbSNP
rs906488547 1904 dbSNP
rs1280189595 1913 dbSNP
rs1401646526 1913 dbSNP
rs1401715034 1914 dbSNP
rs1414469914 1917 dbSNP
rs1042453045 1928 dbSNP
rs1238407491 1936 dbSNP
rs1338241416 1937 dbSNP
rs574970960 1943 dbSNP
rs1317338400 1954 dbSNP
rs1339528533 1963 dbSNP
rs551754689 1965 dbSNP
rs1216586594 1966 dbSNP
rs1259814031 1974 dbSNP
rs1405792774 1990 dbSNP
rs893924376 1994 dbSNP
rs1018440263 1996 dbSNP
rs1161168217 1997 dbSNP
rs932791900 2007 dbSNP
rs1211815711 2011 dbSNP
rs182494467 2021 dbSNP
rs760716309 2024 dbSNP
rs944304189 2027 dbSNP
rs911543317 2038 dbSNP
rs769440270 2047 dbSNP
rs1171362074 2053 dbSNP
rs1399389380 2062 dbSNP
rs1195237721 2065 dbSNP
rs1313049982 2080 dbSNP
rs1359486216 2080 dbSNP
rs1397821238 2109 dbSNP
rs1279821114 2115 dbSNP
rs771589846 2115 dbSNP
rs1030551549 2116 dbSNP
rs920368018 2125 dbSNP
rs1199998217 2135 dbSNP
rs374073826 2146 dbSNP
rs1009748809 2150 dbSNP
rs892467495 2163 dbSNP
rs973145602 2167 dbSNP
rs1285488031 2179 dbSNP
rs749862082 2189 dbSNP
rs1453745166 2194 dbSNP
rs1001264810 2205 dbSNP
rs146658462 2209 dbSNP
rs1262808566 2216 dbSNP
rs1045537300 2220 dbSNP
rs1451429884 2224 dbSNP
rs1213238856 2232 dbSNP
rs529768785 2235 dbSNP
rs1455132301 2237 dbSNP
rs949276357 2245 dbSNP
rs759682233 2251 dbSNP
rs566977838 2259 dbSNP
rs190235823 2273 dbSNP
rs917733756 2275 dbSNP
rs1299674291 2287 dbSNP
rs1359758990 2290 dbSNP
rs1269588104 2296 dbSNP
rs1385350687 2297 dbSNP
rs544204444 2319 dbSNP
rs1386013976 2328 dbSNP
rs576947112 2330 dbSNP
rs1332534616 2337 dbSNP
rs1323658793 2340 dbSNP
rs1234982205 2345 dbSNP
rs1460546520 2359 dbSNP
rs1351626850 2366 dbSNP
rs970704211 2377 dbSNP
rs1261537187 2379 dbSNP
rs1020955878 2380 dbSNP
rs929845874 2381 dbSNP
rs1208419898 2382 dbSNP
rs919834875 2383 dbSNP
rs973806453 2388 dbSNP
rs1469277109 2390 dbSNP
rs1178617092 2392 dbSNP
rs1463650390 2394 dbSNP
rs964033469 2402 dbSNP
rs911004748 2409 dbSNP
rs893831620 2412 dbSNP
rs986929661 2414 dbSNP
rs1364033166 2424 dbSNP
rs1457144041 2431 dbSNP
rs774137827 2434 dbSNP
rs1030415879 2440 dbSNP
rs1392681450 2447 dbSNP
rs1441486109 2448 dbSNP
rs1330627938 2452 dbSNP
rs558881517 2470 dbSNP
rs1009780900 2480 dbSNP
rs533702019 2482 dbSNP
rs1307873886 2499 dbSNP
rs1321348711 2503 dbSNP
rs78805444 2507 dbSNP
rs572945283 2508 dbSNP
rs1193438593 2514 dbSNP
rs1335936327 2519 dbSNP
rs899958326 2528 dbSNP
rs1256721789 2531 dbSNP
rs1456029177 2533 dbSNP
rs1178417432 2539 dbSNP
rs1458360497 2540 dbSNP
rs1250697246 2546 dbSNP
rs554473852 2547 dbSNP
rs1184992910 2548 dbSNP
rs1419709930 2551 dbSNP
rs144622040 2564 dbSNP
rs1196818601 2566 dbSNP
rs1307063060 2570 dbSNP
rs905178817 2576 dbSNP
rs1398015109 2577 dbSNP
rs1463524408 2578 dbSNP
rs1279433502 2592 dbSNP
rs568990345 2600 dbSNP
rs1394459786 2607 dbSNP
rs1013635901 2609 dbSNP
rs1315140242 2609 dbSNP
rs1300929517 2616 dbSNP
rs187292811 2619 dbSNP
rs896327891 2621 dbSNP
rs7926511 2627 dbSNP
rs1205878847 2633 dbSNP
rs1377152741 2636 dbSNP
rs1378074100 2643 dbSNP
rs1198306955 2653 dbSNP
rs929790557 2659 dbSNP
rs1475366835 2686 dbSNP
rs1192664740 2699 dbSNP
rs1421265755 2701 dbSNP
rs1430212625 2707 dbSNP
rs898437588 2712 dbSNP
rs1038678311 2713 dbSNP
rs752946012 2716 dbSNP
rs1464610043 2727 dbSNP
rs910858169 2735 dbSNP
rs571355856 2738 dbSNP
rs879565533 2739 dbSNP
rs1376276715 2740 dbSNP
rs1399699932 2750 dbSNP
rs1296704097 2755 dbSNP
rs773250454 2761 dbSNP
rs933709544 2765 dbSNP
rs1215630007 2778 dbSNP
rs1301192203 2785 dbSNP
rs1439388597 2798 dbSNP
rs1311043855 2799 dbSNP
rs781281565 2801 dbSNP
rs1353356024 2812 dbSNP
rs1281931953 2813 dbSNP
rs912976892 2823 dbSNP
rs1485778138 2830 dbSNP
rs1176184553 2835 dbSNP
rs988309309 2836 dbSNP
rs1393849915 2851 dbSNP
rs111284421 2859 dbSNP
rs1486742069 2861 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55293.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000396197.3 | 3UTR | AAUUUUACAUGCACUUUAAAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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