miRTarBase - #MIRT554220


—
pre-miRNA Information
pre-miRNA hsa-mir-4641   
Genomic Coordinates chr6: 41598723 - 41598788
Description Homo sapiens miR-4641 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4641
Sequence 42| UGCCCAUGCCAUACUUUUGCCUCA |65
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26639373 2 COSMIC
COSN26565394 8 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1373321216 2 dbSNP
rs1308336996 3 dbSNP
rs77674981 8 dbSNP
rs1207697996 10 dbSNP
rs764486175 13 dbSNP
rs751699264 14 dbSNP
rs1264377902 18 dbSNP
rs1359658375 21 dbSNP
rs757278893 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC2A3   
Synonyms GLUT3
Description solute carrier family 2 member 3
Transcript NM_006931   
Expression
Putative miRNA Targets on SLC2A3
3'UTR of SLC2A3
(miRNA target sites are highlighted)		 
>SLC2A3|NM_006931|3'UTR
   1 GTCGTGCCTCCTTCCACCTCCCTCCCGGCATGGGAAAGCCACCTCTCCCTCAACAAGGGAGAGACCTCATCAGGATGAAC
  81 CCAGGACGCTTCTGAATGCTGCTACTTAATTCCTTTCTCATCCCACGCACTCCATGAGCACCCCAAGGCTGCGGTTTGTT
 161 GGATCTTCAATGGCTTTTTAAATTTTATTTCCTGGACATCCTCTTCTGCTTAGGAGAGACCGAGTGAACCTACCTTCATT
 241 TCAGGAGGGATTGGCCGCTTGGCACATGACAACTTTGCCAGCTTTTCCTCCCTTGGGTTCTGATATTGCCGCACTAGGGG
 321 ATATAGGAGAGGAAAAGTAAGGTGCAGTTCCCCCAACCTCAGACTTACCAGGAAGCAGATACATATGAGTGTGGAAGCCG
 401 GAGGGTGTTTATGTAAGAGCACCTTCCTCACTTCCATACAGCTCTACGTGGCAAATTAACTTGAGTTTTATTTATTTTAT
 481 CCTCTGGTTTAATTACATAATTTTTTTTTTTTAACTTTAAGTTTCAGGATACATGTGCCGAATGTGCAGGTTTGTTACAT
 561 AGGTATATATATGCCATGATGGAAATATTTATTTTTTTAAGCGTAATTTTGCCAAATAATAAAAACAGAAGGAAATTGAG
 641 ATTAGAGGGAGGTGTTTAAAGAGAGGTTATAGAGTAGAAGATTTGATGCTGGAGAGGTTAAGGTGCAATAAGAATTTAGG
 721 GAGAAATGTTGTTCATTATTGGAGGGTAAATGATGTGGTGCCTGAGGTCTGTACGTTACCTCTTAACAATTTCTGTCCTT
 801 CAGATGGAAACTCTTTAACTTCTCGTAAAAGTCATATACCTATATAATAAAGCTACTGATTTCCTTTGGAGCTTTTTTCT
 881 TTAAGATAATAGTTTACATGTAGTAGTACTTGAAATCTAGGATTATTAACTAATATGGGCATTGTAGTTAATGATGGTTG
 961 ATGGGTTCTAATTTTGGATGGAGTCCAGGGAAGAGAAAGTGATTTCTAGAAAGCCTGTTCCCCTCACTGGATGAAATAAC
1041 TCCTTCTTGTAGTAGTCTCATTACTTTTGAAGTAATCCCGCCACCTATCTCGTGGGAGAGCCATCCAAATAAGAAACCTA
1121 AAATAATTGGTTCTTGGTAGAGATTCATTATTTTTCCACTTTGTTCTTTAGGAGATTTTAGGTGTTGATTTTCTGTTGTA
1201 TTTTAACTCATACCTTTAAAGGAATTCCCCAAAGAATGTTTATAGCAAACTTGGAATTTGTAACCTCAGCTCTGGGAGAG
1281 GATTTTTTTCTGAGCGATTATTATCTAAAGTGTGTTGTTGCTTTAGGCTCACGGCACGCTTGCGTATGTCTGTTACCATG
1361 TCACTGTGGTCCTATGCCGAATGCCCTCAGGGGACTTGAATCTTTCCAATAAACCAGGTTTAGACAGTATGAGTCAATGT
1441 GCAGTGTAGCCCACACTTGAGAGGATGAATGTATGTGCACTGTCACTTTGCTCTGGGTGGAAGTACGTTATTGTTGACTT
1521 ATTTTCTCTGTGTTTGTTCCTACAGCCCCTTTTTCATATGTTGCTCAGTCTCCCTTTCCCTTCTTGGTGCTTACACATCT
1601 CAGACCCTTTAGCCAAACCCTTGTCAGTGACAGTATTTTGGTTCTTAGTTCTCACTGTTCCCTCTGCTCCTGGAGCCTTT
1681 GAATAAAAATGCACGTAGCTGAGGCCGGATGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGCGGGCG
1761 GTCAGGGGTTCGAGACCAGTCTGGCCAACATCGTGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCCGGGCGTGGTG
1841 GCGGGCGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCGGGAGAATCATGTGAACCCGGGACGCAGGGGTTGCAGTGAG
1921 CGGAGATCGCATCATTGCACTCTAGCCTGGGCCACAGGGCGAGACTCCGTCTCAAAAAAAAAAAAATGCACATAGCTATC
2001 AAGTGTGCTTTAGCTTGAAAAGGTGACCTTGCAACTTCATGTCAACTTCTGGCTCCTCAAACAGTAGGTTGGCAGTAAGG
2081 CAGGGTCCCATTTCTCACTGAGAAGATTGTGAATATTTCCATATGGATTTTCTATTGTTACTCTGGTTCTTTGTTTTAAA
2161 ATAAAAATTCTGAATGTACACGACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acUCCGUUUUCAU--ACCGUACCCGu 5'
            ||| |  | ||  |  :|||||| 
Target 5' ctAGG-ATTATTAACTAATATGGGCa 3'
 917 - 941 131.00 -13.30
2 
miRNA  3' acuccguuuucauaCCGUACCCgu 5'
                        ||||||||  
Target 5' tccacctccctcccGGCATGGGaa 3'
 13 - 36 130.00 -14.50
3 
miRNA  3' acuccguuuUCAUACCGUACCCGu 5'
                   | | | || ||||| 
Target 5' catcattgcACTCTAGCCTGGGCc 3'
 1930 - 1953 119.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19730193 3 COSMIC
COSN26507562 4 COSMIC
COSN30617582 7 COSMIC
COSN30518541 10 COSMIC
COSN30451154 11 COSMIC
COSN30132284 18 COSMIC
COSN30482049 20 COSMIC
COSN13420490 26 COSMIC
COSN26995179 26 COSMIC
COSN26995178 27 COSMIC
COSN30516495 27 COSMIC
COSN26995186 28 COSMIC
COSN30166136 31 COSMIC
COSN30152317 34 COSMIC
COSN31506311 61 COSMIC
COSN31524938 63 COSMIC
COSN30516420 65 COSMIC
COSN1152520 66 COSMIC
COSN1152519 68 COSMIC
COSN31489434 74 COSMIC
COSN26995181 88 COSMIC
COSN30515695 101 COSMIC
COSN15322327 108 COSMIC
COSN15324778 112 COSMIC
COSN13420486 127 COSMIC
COSN30511355 139 COSMIC
COSN31582332 140 COSMIC
COSN15305280 153 COSMIC
COSN30185169 162 COSMIC
COSN31536803 201 COSMIC
COSN20568959 256 COSMIC
COSN30624511 257 COSMIC
COSN20077667 311 COSMIC
COSN21636794 315 COSMIC
COSN31480072 337 COSMIC
COSN23987852 350 COSMIC
COSN32063762 385 COSMIC
COSN31533356 393 COSMIC
COSN28824382 500 COSMIC
COSN20109148 513 COSMIC
COSN20109146 820 COSMIC
COSN25504758 895 COSMIC
COSN23909354 1154 COSMIC
COSN28787616 1198 COSMIC
COSN31535021 1227 COSMIC
COSN1587419 1228 COSMIC
COSN9478413 1722 COSMIC
COSN16396401 1949 COSMIC
COSN8586786 2087 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760093817 1 dbSNP
rs377067449 3 dbSNP
rs151144610 4 dbSNP
rs1188788870 6 dbSNP
rs776371186 6 dbSNP
rs1237343045 7 dbSNP
rs768246503 8 dbSNP
rs980577037 9 dbSNP
rs202135221 15 dbSNP
rs1336335186 16 dbSNP
rs749632493 19 dbSNP
rs772073924 20 dbSNP
rs745801622 22 dbSNP
rs779093684 26 dbSNP
rs757432997 27 dbSNP
rs1364418930 28 dbSNP
rs753913910 31 dbSNP
rs1312059018 32 dbSNP
rs1443125522 38 dbSNP
rs1395323782 40 dbSNP
rs1257371354 46 dbSNP
rs1304624889 47 dbSNP
rs760620682 48 dbSNP
rs1456639083 49 dbSNP
rs778024274 50 dbSNP
rs1448752740 53 dbSNP
rs1344587592 55 dbSNP
rs1310517817 59 dbSNP
rs868621198 66 dbSNP
rs868102771 68 dbSNP
rs1373432995 73 dbSNP
rs1442618357 74 dbSNP
rs1305440458 82 dbSNP
rs969593554 87 dbSNP
rs1237529449 88 dbSNP
rs1399205565 88 dbSNP
rs1024925930 98 dbSNP
rs111815763 108 dbSNP
rs113911085 112 dbSNP
rs1356952645 117 dbSNP
rs1422841975 123 dbSNP
rs1421494887 124 dbSNP
rs1176773749 126 dbSNP
rs1359808014 127 dbSNP
rs1174720153 128 dbSNP
rs563135864 138 dbSNP
rs956428020 140 dbSNP
rs1433448838 148 dbSNP
rs1318635408 149 dbSNP
rs1367557744 150 dbSNP
rs1436129142 151 dbSNP
rs1274597917 152 dbSNP
rs759017387 153 dbSNP
rs1221424627 157 dbSNP
rs1030684669 164 dbSNP
rs148642648 170 dbSNP
rs1239094893 178 dbSNP
rs12579221 186 dbSNP
rs1482552028 192 dbSNP
rs996390394 196 dbSNP
rs1210908649 206 dbSNP
rs745455754 211 dbSNP
rs1411064887 213 dbSNP
rs1455596082 216 dbSNP
rs1156982274 220 dbSNP
rs771496452 222 dbSNP
rs1040655475 228 dbSNP
rs1239614645 229 dbSNP
rs940927970 232 dbSNP
rs143969533 233 dbSNP
rs1350358881 238 dbSNP
rs1227128666 240 dbSNP
rs1269449683 247 dbSNP
rs1329307974 251 dbSNP
rs149898511 256 dbSNP
rs1393116329 257 dbSNP
rs1376847291 278 dbSNP
rs1301821155 282 dbSNP
rs866594336 287 dbSNP
rs1452984334 297 dbSNP
rs768603991 302 dbSNP
rs758314555 310 dbSNP
rs112455712 311 dbSNP
rs1414258983 314 dbSNP
rs980148921 318 dbSNP
rs780029097 333 dbSNP
rs755670285 343 dbSNP
rs187618911 348 dbSNP
rs796501383 350 dbSNP
rs947936013 352 dbSNP
rs756421993 356 dbSNP
rs1422654916 357 dbSNP
rs1351645417 358 dbSNP
rs991976583 360 dbSNP
rs1256055648 362 dbSNP
rs778046839 364 dbSNP
rs767561229 368 dbSNP
rs1486698709 385 dbSNP
rs1283922428 391 dbSNP
rs1481984151 395 dbSNP
rs1216192553 398 dbSNP
rs1278764091 399 dbSNP
rs1354655695 400 dbSNP
rs1261132755 405 dbSNP
rs1240911898 406 dbSNP
rs1473882707 422 dbSNP
rs1164507247 426 dbSNP
rs1389934632 430 dbSNP
rs1319914868 444 dbSNP
rs766786745 446 dbSNP
rs1310250667 447 dbSNP
rs752792318 448 dbSNP
rs1415244845 449 dbSNP
rs1331586738 452 dbSNP
rs1356846575 455 dbSNP
rs751442739 464 dbSNP
rs1295754938 469 dbSNP
rs774771121 476 dbSNP
rs967696032 485 dbSNP
rs1246241012 497 dbSNP
rs1399060011 500 dbSNP
rs1339641881 502 dbSNP
rs1028783890 513 dbSNP
rs1230271319 513 dbSNP
rs1491586906 513 dbSNP
rs58652875 513 dbSNP
rs200501289 514 dbSNP
rs996312914 514 dbSNP
rs36093902 515 dbSNP
rs376005890 515 dbSNP
rs1184286491 516 dbSNP
rs1247579375 529 dbSNP
rs1456729452 532 dbSNP
rs1368190429 539 dbSNP
rs754300681 540 dbSNP
rs1170828490 549 dbSNP
rs775835549 559 dbSNP
rs1465959568 576 dbSNP
rs1171397851 592 dbSNP
rs1403716033 599 dbSNP
rs760970664 602 dbSNP
rs752457234 603 dbSNP
rs886695687 605 dbSNP
rs1295993627 611 dbSNP
rs1311443375 612 dbSNP
rs1230964725 613 dbSNP
rs1257618702 623 dbSNP
rs1345640693 631 dbSNP
rs1261188140 636 dbSNP
rs1049270205 640 dbSNP
rs1463686715 640 dbSNP
rs1190804408 643 dbSNP
rs767042317 645 dbSNP
rs1192998611 647 dbSNP
rs1447864630 653 dbSNP
rs994832740 657 dbSNP
rs758849957 663 dbSNP
rs905871451 666 dbSNP
rs1044514506 668 dbSNP
rs147295807 680 dbSNP
rs1458507209 682 dbSNP
rs1278600795 686 dbSNP
rs1289023966 697 dbSNP
rs1487383309 699 dbSNP
rs1366468973 702 dbSNP
rs182167938 717 dbSNP
rs1233842750 723 dbSNP
rs1056702808 734 dbSNP
rs750709474 734 dbSNP
rs1336820018 743 dbSNP
rs191806000 748 dbSNP
rs1310591726 757 dbSNP
rs773679330 758 dbSNP
rs1218219191 761 dbSNP
rs1261603248 761 dbSNP
rs1327094513 761 dbSNP
rs1488271146 766 dbSNP
rs1208478353 771 dbSNP
rs1217472822 774 dbSNP
rs761265914 775 dbSNP
rs1409141680 779 dbSNP
rs1473246386 789 dbSNP
rs979339339 797 dbSNP
rs1456038182 807 dbSNP
rs1295104405 812 dbSNP
rs1365913401 817 dbSNP
rs1409149908 819 dbSNP
rs199729467 822 dbSNP
rs772159105 822 dbSNP
rs967727288 824 dbSNP
rs921587342 825 dbSNP
rs1307768631 832 dbSNP
rs767999444 834 dbSNP
rs1390496335 838 dbSNP
rs1490598213 839 dbSNP
rs762991197 842 dbSNP
rs1463510626 843 dbSNP
rs748044650 844 dbSNP
rs1170135017 846 dbSNP
rs1177318348 853 dbSNP
rs1412397141 865 dbSNP
rs1421712644 868 dbSNP
rs769773588 871 dbSNP
rs754816858 874 dbSNP
rs1428948040 879 dbSNP
rs371175626 879 dbSNP
rs1305939110 886 dbSNP
rs1372382365 891 dbSNP
rs772316903 909 dbSNP
rs1378462144 914 dbSNP
rs1018658238 919 dbSNP
rs1317340625 921 dbSNP
rs1451202846 924 dbSNP
rs571923754 925 dbSNP
rs1272897247 930 dbSNP
rs1309819984 934 dbSNP
rs1205780595 937 dbSNP
rs1214094291 940 dbSNP
rs1469815056 944 dbSNP
rs1481951746 953 dbSNP
rs879131303 954 dbSNP
rs879154097 955 dbSNP
rs1448479226 958 dbSNP
rs764218799 963 dbSNP
rs367616109 965 dbSNP
rs1391741995 974 dbSNP
rs1271381733 976 dbSNP
rs1410484592 988 dbSNP
rs1230670817 991 dbSNP
rs1175198734 995 dbSNP
rs1044810037 996 dbSNP
rs773569529 999 dbSNP
rs866572623 999 dbSNP
rs764093499 1011 dbSNP
rs186954156 1015 dbSNP
rs895893854 1017 dbSNP
rs1053198901 1024 dbSNP
rs780525813 1032 dbSNP
rs1215671867 1043 dbSNP
rs923749452 1044 dbSNP
rs1443546023 1049 dbSNP
rs1398485298 1075 dbSNP
rs1263183526 1079 dbSNP
rs555482917 1080 dbSNP
rs1243644754 1084 dbSNP
rs1471302717 1086 dbSNP
rs1475579146 1089 dbSNP
rs946631185 1091 dbSNP
rs1398749846 1092 dbSNP
rs1178721398 1093 dbSNP
rs1406862864 1095 dbSNP
rs750764489 1101 dbSNP
rs1347178574 1103 dbSNP
rs1432005256 1110 dbSNP
rs776192666 1111 dbSNP
rs761547227 1118 dbSNP
rs772136179 1120 dbSNP
rs1283392380 1123 dbSNP
rs1195674803 1130 dbSNP
rs1455427774 1131 dbSNP
rs1236094331 1134 dbSNP
rs965707494 1136 dbSNP
rs182415802 1141 dbSNP
rs983219390 1144 dbSNP
rs1274553440 1145 dbSNP
rs950910143 1150 dbSNP
rs878879621 1154 dbSNP
rs1199991714 1157 dbSNP
rs1346773017 1161 dbSNP
rs1280616356 1162 dbSNP
rs1235952474 1167 dbSNP
rs1387479519 1172 dbSNP
rs1375182088 1181 dbSNP
rs879155143 1182 dbSNP
rs1323347815 1186 dbSNP
rs535532348 1198 dbSNP
rs1443619621 1202 dbSNP
rs1338015919 1203 dbSNP
rs1407311240 1218 dbSNP
rs1304207755 1229 dbSNP
rs1226098245 1236 dbSNP
rs1280760502 1247 dbSNP
rs1027790653 1268 dbSNP
rs369058434 1275 dbSNP
rs1413992717 1283 dbSNP
rs1287488854 1286 dbSNP
rs1490761022 1287 dbSNP
rs1210330892 1295 dbSNP
rs879223939 1303 dbSNP
rs772219148 1305 dbSNP
rs1376081235 1311 dbSNP
rs1482020068 1312 dbSNP
rs774957708 1321 dbSNP
rs1365568499 1322 dbSNP
rs772865567 1328 dbSNP
rs17847961 1332 dbSNP
rs1383780029 1335 dbSNP
rs374605217 1337 dbSNP
rs1164589074 1338 dbSNP
rs1370531140 1340 dbSNP
rs1023181974 1344 dbSNP
rs1335777343 1346 dbSNP
rs1446846263 1348 dbSNP
rs1014702875 1351 dbSNP
rs1234518406 1352 dbSNP
rs1361137495 1354 dbSNP
rs1486281893 1374 dbSNP
rs1273613723 1375 dbSNP
rs1340009810 1375 dbSNP
rs1185250972 1376 dbSNP
rs1197434907 1378 dbSNP
rs895811482 1379 dbSNP
rs1438401186 1389 dbSNP
rs1186922657 1393 dbSNP
rs1241592911 1395 dbSNP
rs1032195397 1409 dbSNP
rs1389890960 1412 dbSNP
rs1460933771 1413 dbSNP
rs1170084979 1420 dbSNP
rs998925955 1433 dbSNP
rs1257556957 1434 dbSNP
rs1413471904 1440 dbSNP
rs774221182 1446 dbSNP
rs1212602442 1447 dbSNP
rs1384596509 1454 dbSNP
rs1351017254 1463 dbSNP
rs1296625353 1469 dbSNP
rs1324412096 1470 dbSNP
rs1229523617 1472 dbSNP
rs1251884805 1473 dbSNP
rs904580551 1475 dbSNP
rs769824441 1480 dbSNP
rs759299920 1485 dbSNP
rs1261298995 1492 dbSNP
rs1224679196 1494 dbSNP
rs150830214 1506 dbSNP
rs900426909 1507 dbSNP
rs1038942392 1513 dbSNP
rs1195763921 1516 dbSNP
rs1447898378 1523 dbSNP
rs1356201271 1534 dbSNP
rs7975767 1537 dbSNP
rs1407591657 1543 dbSNP
rs1398431255 1545 dbSNP
rs757503547 1548 dbSNP
rs148293586 1550 dbSNP
rs1382319146 1558 dbSNP
rs1383761440 1564 dbSNP
rs1295996982 1565 dbSNP
rs1158175586 1570 dbSNP
rs1221565443 1572 dbSNP
rs983049860 1575 dbSNP
rs1325681687 1578 dbSNP
rs1204384441 1579 dbSNP
rs768781206 1580 dbSNP
rs375371160 1581 dbSNP
rs1207304912 1583 dbSNP
rs973549326 1589 dbSNP
rs970190573 1594 dbSNP
rs1197821200 1596 dbSNP
rs1430789951 1607 dbSNP
rs1480516548 1622 dbSNP
rs1474809752 1624 dbSNP
rs780575012 1633 dbSNP
rs1454990008 1636 dbSNP
rs557542374 1637 dbSNP
rs1389682791 1643 dbSNP
rs771004797 1646 dbSNP
rs1487141061 1648 dbSNP
rs1224256648 1653 dbSNP
rs1306344714 1666 dbSNP
rs1315388048 1667 dbSNP
rs1432460535 1671 dbSNP
rs1031686326 1672 dbSNP
rs191676870 1673 dbSNP
rs1490269184 1676 dbSNP
rs113786758 1684 dbSNP
rs1271754174 1692 dbSNP
rs750844335 1693 dbSNP
rs904613160 1694 dbSNP
rs1021686503 1695 dbSNP
rs1233262268 1696 dbSNP
rs777845893 1699 dbSNP
rs781641670 1704 dbSNP
rs1159298436 1706 dbSNP
rs537762313 1707 dbSNP
rs368099639 1712 dbSNP
rs867926832 1713 dbSNP
rs745628651 1720 dbSNP
rs781083291 1722 dbSNP
rs1409094564 1723 dbSNP
rs1039388121 1727 dbSNP
rs751287872 1731 dbSNP
rs1289669294 1732 dbSNP
rs1371204927 1746 dbSNP
rs944627265 1751 dbSNP
rs1308056045 1754 dbSNP
rs550618698 1755 dbSNP
rs1358979545 1759 dbSNP
rs772994977 1759 dbSNP
rs865851062 1765 dbSNP
rs890344572 1766 dbSNP
rs1360826577 1768 dbSNP
rs1047387667 1772 dbSNP
rs756821223 1773 dbSNP
rs1177263743 1774 dbSNP
rs1442364591 1791 dbSNP
rs1127448 1792 dbSNP
rs767180300 1793 dbSNP
rs763642588 1798 dbSNP
rs973122648 1800 dbSNP
rs1476559113 1802 dbSNP
rs1463644463 1803 dbSNP
rs769082494 1809 dbSNP
rs1382355664 1818 dbSNP
rs916066869 1824 dbSNP
rs1317635416 1828 dbSNP
rs752237309 1830 dbSNP
rs112736665 1831 dbSNP
rs747584595 1834 dbSNP
rs977429233 1835 dbSNP
rs968698677 1837 dbSNP
rs780923963 1838 dbSNP
rs1213457357 1841 dbSNP
rs1469354189 1842 dbSNP
rs9668074 1843 dbSNP
rs1197226413 1846 dbSNP
rs749110348 1847 dbSNP
rs1429017637 1851 dbSNP
rs964932414 1858 dbSNP
rs1216594071 1859 dbSNP
rs1405373572 1859 dbSNP
rs1338866066 1860 dbSNP
rs373797370 1864 dbSNP
rs1301061173 1868 dbSNP
rs1364742711 1872 dbSNP
rs1009106435 1879 dbSNP
rs186791079 1880 dbSNP
rs1263434853 1888 dbSNP
rs369599864 1889 dbSNP
rs1213433219 1890 dbSNP
rs1243589176 1891 dbSNP
rs1486163909 1898 dbSNP
rs1394864788 1899 dbSNP
rs1428685393 1901 dbSNP
rs183931157 1903 dbSNP
rs757991307 1904 dbSNP
rs1426195379 1906 dbSNP
rs1460361678 1908 dbSNP
rs1316711884 1909 dbSNP
rs1353470498 1912 dbSNP
rs1432119432 1913 dbSNP
rs890385731 1914 dbSNP
rs1344156424 1921 dbSNP
rs1170496606 1922 dbSNP
rs1047629715 1924 dbSNP
rs375155868 1929 dbSNP
rs993160472 1933 dbSNP
rs768834507 1934 dbSNP
rs1317218185 1936 dbSNP
rs1037441163 1938 dbSNP
rs1266749352 1941 dbSNP
rs948509406 1942 dbSNP
rs1454984996 1952 dbSNP
rs1255239229 1960 dbSNP
rs192262122 1961 dbSNP
rs1304528138 1965 dbSNP
rs915623889 1968 dbSNP
rs1410435329 1969 dbSNP
rs1177337815 1973 dbSNP
rs78978061 1986 dbSNP
rs1163315268 1987 dbSNP
rs138345021 1987 dbSNP
rs1451297338 1987 dbSNP
rs76062060 1987 dbSNP
rs769823931 1987 dbSNP
rs1057304698 1992 dbSNP
rs1252001687 1993 dbSNP
rs1280994073 1996 dbSNP
rs1373582637 2000 dbSNP
rs12842 2001 dbSNP
rs1310720668 2003 dbSNP
rs1279894855 2008 dbSNP
rs1289278562 2008 dbSNP
rs765528868 2039 dbSNP
rs938818078 2056 dbSNP
rs924893817 2061 dbSNP
rs1234861149 2064 dbSNP
rs977667619 2066 dbSNP
rs199751223 2068 dbSNP
rs761289777 2071 dbSNP
rs1383717590 2087 dbSNP
rs757606690 2089 dbSNP
rs1164272313 2098 dbSNP
rs1396399060 2099 dbSNP
rs1298312965 2107 dbSNP
rs1330279152 2127 dbSNP
rs754410577 2134 dbSNP
rs975791553 2146 dbSNP
rs1384640154 2147 dbSNP
rs773415104 2151 dbSNP
rs1020081884 2159 dbSNP
rs1337341336 2162 dbSNP
rs1194189250 2172 dbSNP
rs1275156398 2178 dbSNP
rs943013023 2181 dbSNP
rs954699142 2182 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6515.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acuccguuUUCAUACCGUACCCGu 5'
                  || ||   :|||||| 
Target 5' --auuauuAACUA--AUAUGGGCa 3'
 		1 - 20
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_006931 | 3UTR | ACAUGUAGUAGUACUUGAAAUCUAGGAUUAUUAACUAAUAUGGGCAUUGUAGUUAAUGAUGGUUGAUGGGUUCUAAUUUUGGAUGGAGUCCAGGGAAGAGAAAGUGAUUUCUAGAAAGCCUGUUCCCCUCACUGGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_006931 | 3UTR | AUGUAGUAGUACUUGAAAUCUAGGAUUAUUAACUAAUAUGGGCAUUGUAGUUAAUGAUGGUUGAUGGGUUCUAAUUUUGGAUGGAGUCCAGGGAAGAGAAAGUGAUUUCUAGAAAGCCUGUUCCCCUCACUGGAUGAAAUAACUCCUUCUUGUAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000075120.7 | 3UTR | AUUAUUAACUAAUAUGGGCAUUGUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
47 hsa-miR-4641 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082839 ZNF460 zinc finger protein 460 2 6
MIRT153778 NCOA3 nuclear receptor coactivator 3 2 2
MIRT168563 HMGA1 high mobility group AT-hook 1 2 2
MIRT192245 BTF3L4 basic transcription factor 3 like 4 2 4
MIRT195168 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 4
MIRT233689 IGF1R insulin like growth factor 1 receptor 2 2
MIRT256315 CDC42SE2 CDC42 small effector 2 2 2
MIRT277105 CDCA8 cell division cycle associated 8 2 2
MIRT358532 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT452315 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT454556 WARS tryptophanyl-tRNA synthetase 2 2
MIRT465518 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT468196 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT473446 MCOLN2 mucolipin 2 2 8
MIRT478074 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT494943 IFFO2 intermediate filament family orphan 2 2 2
MIRT495545 ANKRD65 ankyrin repeat domain 65 2 2
MIRT501671 PFN1 profilin 1 2 8
MIRT506311 PANK3 pantothenate kinase 3 2 4
MIRT507871 CBX6 chromobox 6 2 2
MIRT514031 BNIP2 BCL2 interacting protein 2 2 2
MIRT527792 KLRD1 killer cell lectin like receptor D1 2 2
MIRT529896 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT546702 RORA RAR related orphan receptor A 2 4
MIRT554220 SLC2A3 solute carrier family 2 member 3 2 2
MIRT554253 SIX4 SIX homeobox 4 2 2
MIRT557722 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT573043 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT573998 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT574694 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT611607 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT624505 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT630620 CXCR6 C-X-C motif chemokine receptor 6 2 2
MIRT634862 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT640371 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT641515 CREBBP CREB binding protein 2 2
MIRT645031 DVL1 dishevelled segment polarity protein 1 2 2
MIRT649688 SLC1A1 solute carrier family 1 member 1 2 2
MIRT665113 DNASE2 deoxyribonuclease 2, lysosomal 2 2
MIRT700687 POLR3D RNA polymerase III subunit D 2 2
MIRT703456 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT705286 B4GALT1 beta-1,4-galactosyltransferase 1 2 2
MIRT708277 ZNF101 zinc finger protein 101 2 2
MIRT709670 AJAP1 adherens junctions associated protein 1 2 2
MIRT712896 TGFA transforming growth factor alpha 2 2
MIRT717596 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT719008 TMEM184C transmembrane protein 184C 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4641 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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