miRTarBase - #MIRT554337


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pre-miRNA Information
pre-miRNA hsa-mir-6871   
Genomic Coordinates chr20: 41169023 - 41169078
Description Homo sapiens miR-6871 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6871-3p
Sequence 35| CAGCACCCUGUGGCUCCCACAG |56
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN16670239 4 COSMIC
COSN1872096 9 COSMIC
COSM1741616 16 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs545076040 1 dbSNP
rs1273348199 2 dbSNP
rs1202373059 5 dbSNP
rs1340707970 7 dbSNP
rs372994756 8 dbSNP
rs869070782 15 dbSNP
rs931272568 16 dbSNP
rs1333765165 18 dbSNP
Putative Targets

Gene Information
Gene Symbol SH3GLB1   
Synonyms Bif-1, CGI-61, PPP1R70, dJ612B15.2
Description SH3 domain containing GRB2 like, endophilin B1
Transcript NM_016009   
Expression
Putative miRNA Targets on SH3GLB1
3'UTR of SH3GLB1
(miRNA target sites are highlighted)		 
>SH3GLB1|NM_016009|3'UTR
   1 GTAGGTGGACTATGGAAAGGTTGCCCATCATGACTTTGTATTTATATACAATTAACTCTAAATAAAGCAGGTTAAGTATC
  81 TTCCATGTTAATGTGTTAAGAGACTGAAAATACCAGCCATCAGAAACTGGCCTTTCTGCCAATAAAGTTGCATGGTAAAT
 161 ATTTCATTACAGAATTTATGTTAGAGCTTTCATGCCAAGAATGTTTTCTTACAAAATTCTCTTTTTATTGAGGTTTCACT
 241 AATAAGCAGCTTCTACTTTTGAGCCTCAACTTAAAGCAGAACTGTTTTCTACTGGATTTTTCATTAACAGCAAGCTTTTT
 321 CTTTTATGTAAAATAAATCTATTGTGAATTGATATCAGCGACTCATTTATTAGGTATAAATAATAGCCAAAGAATAAAAT
 401 TAAAATTTATTTTAAACTTTCGGTCTTAAAAAGAGCTGTAGGATATAAACCTCTTTTGTGAAAAGTAGAATTTTCTGAAT
 481 GCTTTCATAGACAAAAACGCATTTAAACTATGTTTACCTGGTTTTCCAACAGAAATCAAATGATTTTAATATTATGTTTT
 561 GATGGGTTATTTTCAGAGTTGTTTGGTTTTTTAAACACTACTGAATGGTTTCTTTTAAATTTAAGAACAACTAGTTCTTG
 641 AAAAGCAATACCGTATTTCTCTGATAAATTTGTAGTTAAGGTTCTAGAAAATCTAGGACAAATTTACTTCATTAAACATA
 721 AAGTTTTTAAGATTATTCAGTTGGCACAATTTAATGCATAATTGGGATTGGATCCATTTACTGTACTGTGGTACAGTAAA
 801 GAGAATGTGTTCTTATTGAACAGCAGATTTGTATACAAATACGGAATAATGCAACTACATTATAAATTGTATACGAACAA
 881 AATAAATTGGGTCACTCTGAGCTTACTATTAAAACATTGAAAATTTATTAATGAACACAGGCTATCTTGATGAGGATCTC
 961 TGCTTATGAAACACATACTAATGAAATTATTAGTGACACATTGGAAGCTAGAAAATTGCTGTTGGGGCCATTGCTATAAA
1041 TCATTGTTTCCATGTTAAGACTTCTGTTCTAATTCATTCATTCAACAAACATTTGTTGAGGGCCAGATACTGTGCTGGTC
1121 AACTGGGGATACTGTCCTGAACAATATGCACACAGTTCTTGCCCCTGCAGAGCTTAAAGACCATTAAAGGATACAGAAAA
1201 TTAAGCAATTATCCTATAGTAGGATTCGTGGTGTGATGGGGAAAATACAAGGTACTGTATTTGGGAGTCATGTAACTCCA
1281 GTTTTGGGAGTGAGAGAGGGTCTGGGGAAGAACTGTTCCAGATAAAAAGATGTGTAACCAAGATAGCATAGCACATTCTG
1361 ACAACTAAAGCAATTTACTCTAACTTAAGCATGAAGTACAAAAGTATAGTTCATTTATTGAGGGAATGTTAAGCTATTAA
1441 AATGATACTTTTTGGTACTTTTAAAAAAATGAATACTTAAACACCGTTTTAAAATTTTGTGTTAAGAGCTCCTAATAAGA
1521 ACTTGGTAAACATGTTGACAATTTAACTCACAGTCTAAACTTTAAAAGTAGTAGTTACCCTTTTATTTCTGTGCCATGAG
1601 ACAAATTCTTCTGCAGTTTTATAGTTGTACAAGATGTTTTGACTCACTCTCAATTGCCATATTCTTAAAGAAACCCTGAA
1681 AAGCTGCTCAAGCTGGTCAGTTTTCTGTAAAACCAAGTAAATGAAATTTTCTCTCCCCTCAGAAAGGAAGTTCTACAGCC
1761 TAGAGTACCATCTATTGTGTTTTATAAGTCCAGATTTAGGCTTTGAAAGATCATACCAAAACTTCAGATCGACTTAAACA
1841 GCAACTATGAATTAGGTTTATGGGAAATGTAGTAATACAGGGGAAAGAATATCGGTAATGGAGTGAAATGGTCCTGGGTT
1921 CAAATCCAGTCTTCCTCACATATTGTGCTCTTTAAGCTTCAAATGAGATGTATAACTGCCTTTTCCTTACCAGTAAAATG
2001 AGGACAATAATTATGACACCATAGGGTGGTTGTGAGGATTAGCAAATGTTATCTTGTATTTCAGGTGCCTTTCAGGGAAA
2081 GGCTTGGCACATAGTAAACACATCCTGTAAATATCAGTTTCCCCTTGTTAGCCCCTGTAGCATCCTGACCTACCAAGTCT
2161 ATAGGCCTTGCATATCACTGTGCACCAGAGATACCTCTTTTACATCTGGGCTCTGTTTTCTCTCTATCAATCCTATCCTC
2241 CACCCTCTTTAAATCAGACCCCAGGTTTAACCTTCCCACAGTCAGTATAAATCATTTTTCAGAACTTTCAGCTTTCCATC
2321 AAGTGAAAGTTGATTTTAGTTACCCAGTAATGTACAGAAACCTTCAATAATGTTAAGCTTCAAAGGCTTCTGGTACGTTT
2401 GTCTACCACAGAACCACCACAATATATATGCTTGTTCTTAGGTTTATTGCTTTTTATTTTAATGGGGTTTGGTTGTTTGG
2481 GTTTTATTTTGGTTTTGGCTTATTTTAAAGTCAAGTTTAGTTTTTACTCAGGTAAAGGCCTGAAGTTTCTTGGGCGTGGA
2561 AGAAAAAGCTTGGGAAGCCTATTAATTCATGGTGCAGTTCAGAATTGTTTAAATAAGCTCTGTGCCACTGAGCTTAATCT
2641 GAAAGTATAGTGACATGTGAAGGATGCACATATGAATGAAAAACTAAAATAATTGTAGGCTCTTCTATAAATGAAAAAAA
2721 AAGTGATTGGATTGTGTCTACCTTTTTCCTCAAAGTAATCTAACCTAAACGGTCATGGTGTTAAAACTTTTTATGGTGCT
2801 AATCAGAAAAATTGATGTTGCAAGAAATGAGGTCTCAAAAATGGGAATGTGCCTCCTCACTCTGCGTCACATGGGAAATA
2881 AATCCTGAGGCCAGGATCACCAGTGGGGTAGAGTCATCTTCATAGTCTCCTGTTATCCTCCCCCTGAACAAAGAACAAAG
2961 TGAGACTGGGAAGCTAGTGTTGGGGAAACATTTCTGGGATAAACTGTGGAGTGGAGAAGACAATGGAGGGCAAGGCAAAA
3041 ACCCACAGACTTGTTTACCCATAGAGGCCCCACTCACCTCCATGCTGACAGAATTCCAGAAAAATTCCTTCCCTATCTCC
3121 CAAACACCTGAAATTCTGAAATATTGCCCTACTATTTAGCACTTTAAGCTTCAGTGAGGTGCTGTAATGGAGAGATAGCT
3201 TCATAGTTTAGCCTATAGCCAACTTTGCCTCAAGACCTCCAGATAAGATGAAGTGGCTTTTACCTCATGTGAGTCTCAAA
3281 CGCTGGAGAGAGAGTTCCACAACCACCCCTGCCCTTTCTCCCATATTACGCTCATTAGAAAGTCTACTCAGGGCTGGGTG
3361 CCGTGGCTCATGCCTGTAATCCCAGCACTTTGGAGGCTGAGGCGGGTGGATCATCTGAGGTCAGGAGTTCGAGACCAGCC
3441 TGGCCAACATGGGGAAACCCTGTCTCTACTGAAAATATAAAAATTAGCCGGGCATGGTGGCGTGCACCTGTAATTCCAGC
3521 TACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCCAGAGGCAGAGGCTACAGTGAGCCAAGATTGCACCACTGCACT
3601 CCAACCTGGGTGATAGAATAAGACTCTTGTCTCAAGGAAAGAAAAAATGTCTACTCAGTAGAGCAGTGATTGGCAAAGTG
3681 TGAGACCCCAGACCGGCAATATTGGCATCTCCTGGAGACTTGTTTAAAATGCTGATTACTATTTTCAAGAACTTTCTACC
3761 TTCATTTTTACTTATTTTTTGTTTTCAAGGGCTCATGGAATCAGTCTTCCATGTGACAGCTTTTTAAATATTTTAAGACA
3841 AAAACTGAGTCTTCTAATCTTAATTGTGTTCTAGCAGTAGTCATTGTAATTATAGTTATTTTTATAATTTATTTGTTTAG
3921 TGTATATCTGTCACTCTAGAATGTAGGCTCCCTGAGATAAAAACTATAATTCTTTTGATGGCAGTTACATTCCCAACTCT
4001 TAGCACAAGATCTAGGACATAGTATGAACTCAATAAATTTTTGTTGAATGAAAGAAAAATGCAAATTTATAAGCCTTTTC
4081 AGAGACCTACTGAATCAAACTCTGAGAGTGGAGCCCAGCAATCTGTTGTAAAAGCTGTTTGAGTAATACTGTTGCACTCT
4161 AAGCTTGAGAACCACTGCAATAGAACTAAGAGAACATTCATTTCACCTTCAGGCCTATTCTCTGACATCACTTGAAAAAT
4241 CCTCTCTGCCTTCTGTAACCCTTAACCAACAACAGTGCCCTGTCCATGTAGGGGAAACTTCTGGGCTGTATTACAAGTGG
4321 GTAGGAAGGTATAAGGATATCATAGTGGGAAGTATTGCTTAGAATGCCAGTACTTGTTTGCTGTGGAAGGTTTCTAGGAA
4401 TGGATTGCTTAGTCTAAAGTAAGCACTACCACCATCCACGTTTTCACTCAACACAGTGCCTTTTAATTGGTGACTAACAT
4481 CAAAACACCTTGACAAACCGTTAAAACAGTATCAGAAACCATGTGTACATCCCTGTGCCTCTTAGATTGCTAAGTTCTGC
4561 TCTCATTCTTACTTCAAAGGACACTTTTTAAAGAATTGTTAATGCTTTTTTATAATACAAGTCATAGCCCTGTTGGCAAA
4641 AAGAAAAAAGATTCAGTGAGAAAGAAAAATCACTGATAATTCCATCATCCAGGGAGAACCACTGTTATTTAAGTATATGG
4721 CCTTCCAGACTTTTCTGTGCATTTATAGATATTTTTAATGGGATCAAAGTGTACATACTGTTTTGTAACTTTTTTTCACT
4801 CAACAATACCATGACTGTCTTGCTGTGTCAAGTATATTTCTACATCTCTTAATGGCTGCATGATATTCCATCATATGTGC
4881 CACATTTTATTAAACTACTGTTCAATTTTTAGGTTTCCAACTTTCATTAATAAAGTGCTTTAAAGAACAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacACCCUCGGUGUCCCACGAc 5'
             ||  | |||:|||||| | 
Target 5' ttaTGACA-CCATAGGGTGGTt 3'
 2011 - 2031 130.00 -18.02
2 
miRNA  3' gacaccCUCGGUGUCCCACGac 5'
                |:||:   ||||||  
Target 5' tactcaGGGCT---GGGTGCcg 3'
 3345 - 3363 125.00 -13.80
3 
miRNA  3' gacacccUCGGUGU--C-CCACGAc 5'
                 |||: ||  | |||||| 
Target 5' cactttaAGCTTCAGTGAGGTGCTg 3'
 3160 - 3184 121.00 -18.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN18725379 36 COSMIC
COSN5265837 36 COSMIC
COSN30452849 130 COSMIC
COSN31546781 220 COSMIC
COSN31546376 362 COSMIC
COSN31607771 459 COSMIC
COSN31527441 538 COSMIC
COSN31585529 613 COSMIC
COSN17772552 950 COSMIC
COSN7472155 1317 COSMIC
COSN30021367 1414 COSMIC
COSN25997164 1630 COSMIC
COSN21646541 1909 COSMIC
COSN1461864 2383 COSMIC
COSN1109537 2700 COSMIC
COSN31524381 2756 COSMIC
COSN31544118 2824 COSMIC
COSN5860900 3024 COSMIC
COSN6526848 3027 COSMIC
COSN23183047 3155 COSMIC
COSN17981995 3456 COSMIC
COSN16459731 3619 COSMIC
COSN21317246 3725 COSMIC
COSN31584495 3786 COSMIC
COSN31513903 4057 COSMIC
COSN31533322 4065 COSMIC
COSN31568283 4092 COSMIC
COSN23784748 4181 COSMIC
COSN27550269 4264 COSMIC
COSN20094994 4266 COSMIC
COSN7285830 4353 COSMIC
COSN8146075 4508 COSMIC
COSN22794418 4589 COSMIC
COSN1461865 4772 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs200149176 6 dbSNP
rs1172228803 8 dbSNP
rs371139653 9 dbSNP
rs779407839 14 dbSNP
rs1221082595 16 dbSNP
rs1410393297 16 dbSNP
rs890482416 18 dbSNP
rs1398080966 20 dbSNP
rs1442335624 24 dbSNP
rs748827628 28 dbSNP
rs1326523572 30 dbSNP
rs766783331 35 dbSNP
rs7805 36 dbSNP
rs778709456 39 dbSNP
rs751913614 41 dbSNP
rs747890781 45 dbSNP
rs771746115 47 dbSNP
rs1220889448 50 dbSNP
rs773130665 53 dbSNP
rs1344423707 65 dbSNP
rs182277538 66 dbSNP
rs547768073 71 dbSNP
rs906367755 86 dbSNP
rs999328115 87 dbSNP
rs1167319070 101 dbSNP
rs186477456 114 dbSNP
rs878861189 116 dbSNP
rs372453155 120 dbSNP
rs192547923 128 dbSNP
rs758840996 130 dbSNP
rs1269926099 141 dbSNP
rs1233396160 142 dbSNP
rs115786910 143 dbSNP
rs982538121 152 dbSNP
rs1250188955 153 dbSNP
rs118078895 161 dbSNP
rs866879507 179 dbSNP
rs992917866 186 dbSNP
rs1342042065 187 dbSNP
rs915556495 188 dbSNP
rs998448165 191 dbSNP
rs1029835760 195 dbSNP
rs1283603460 196 dbSNP
rs1406377770 210 dbSNP
rs1210194745 211 dbSNP
rs1327859893 213 dbSNP
rs951562211 218 dbSNP
rs982888149 222 dbSNP
rs1170715277 229 dbSNP
rs1469388542 238 dbSNP
rs1430065433 257 dbSNP
rs948652116 268 dbSNP
rs1471697111 270 dbSNP
rs1363621194 272 dbSNP
rs962756812 278 dbSNP
rs1042970500 281 dbSNP
rs1439897840 285 dbSNP
rs1254738601 290 dbSNP
rs925814968 294 dbSNP
rs934462585 303 dbSNP
rs1460535789 305 dbSNP
rs1184741400 308 dbSNP
rs1427118018 313 dbSNP
rs1055807 317 dbSNP
rs1224970700 323 dbSNP
rs1053220411 324 dbSNP
rs535902788 328 dbSNP
rs890556112 339 dbSNP
rs1337274120 340 dbSNP
rs1008958456 342 dbSNP
rs1451806327 344 dbSNP
rs1039449551 352 dbSNP
rs760445376 355 dbSNP
rs900468654 356 dbSNP
rs1321392873 360 dbSNP
rs1388410187 365 dbSNP
rs867453365 365 dbSNP
rs915911384 378 dbSNP
rs1455866567 379 dbSNP
rs1384590573 384 dbSNP
rs549401137 385 dbSNP
rs1295625580 387 dbSNP
rs950053892 388 dbSNP
rs1368961396 402 dbSNP
rs1286153786 421 dbSNP
rs1027862052 422 dbSNP
rs1046320544 428 dbSNP
rs1367074386 428 dbSNP
rs1445696476 437 dbSNP
rs950908717 440 dbSNP
rs1243253394 466 dbSNP
rs1204962992 493 dbSNP
rs1004994747 495 dbSNP
rs1386698090 498 dbSNP
rs1035123275 499 dbSNP
rs960079576 500 dbSNP
rs1352642957 501 dbSNP
rs565940041 509 dbSNP
rs1312564206 511 dbSNP
rs1300067215 521 dbSNP
rs1383380583 536 dbSNP
rs780634949 546 dbSNP
rs1433039800 553 dbSNP
rs1325927441 555 dbSNP
rs1319296945 566 dbSNP
rs1229860609 567 dbSNP
rs1163291710 581 dbSNP
rs1425870779 583 dbSNP
rs569877534 587 dbSNP
rs1328249077 595 dbSNP
rs915595877 596 dbSNP
rs1213433481 598 dbSNP
rs893592592 601 dbSNP
rs1240998781 602 dbSNP
rs1010651986 606 dbSNP
rs1448334127 614 dbSNP
rs534947914 624 dbSNP
rs969747884 632 dbSNP
rs1190492345 635 dbSNP
rs1359852645 645 dbSNP
rs899503147 649 dbSNP
rs998231199 653 dbSNP
rs1266866421 654 dbSNP
rs1270776681 657 dbSNP
rs1473589296 661 dbSNP
rs747362052 662 dbSNP
rs538768884 664 dbSNP
rs1405977153 666 dbSNP
rs1167324692 672 dbSNP
rs1409836269 675 dbSNP
rs934533912 682 dbSNP
rs1052956737 685 dbSNP
rs911686934 687 dbSNP
rs1476096640 703 dbSNP
rs146178664 708 dbSNP
rs1436411910 718 dbSNP
rs263476 741 dbSNP
rs556690703 742 dbSNP
rs1270709225 749 dbSNP
rs1343131860 753 dbSNP
rs748203849 756 dbSNP
rs573411065 757 dbSNP
rs1273826790 759 dbSNP
rs769861982 771 dbSNP
rs1216450496 776 dbSNP
rs1321457020 782 dbSNP
rs1282955347 783 dbSNP
rs1411076915 787 dbSNP
rs542304053 792 dbSNP
rs148528174 806 dbSNP
rs1296741115 811 dbSNP
rs774284350 813 dbSNP
rs370236588 817 dbSNP
rs1023438103 821 dbSNP
rs1411218899 827 dbSNP
rs1221702580 836 dbSNP
rs74635891 838 dbSNP
rs184671274 839 dbSNP
rs1175215060 841 dbSNP
rs1035154696 843 dbSNP
rs115686750 844 dbSNP
rs1289440020 845 dbSNP
rs1483980155 847 dbSNP
rs1460082503 855 dbSNP
rs1183041511 870 dbSNP
rs1262523758 875 dbSNP
rs80179040 876 dbSNP
rs1468853081 881 dbSNP
rs1183761052 885 dbSNP
rs1305106301 888 dbSNP
rs190177169 894 dbSNP
rs1223621281 895 dbSNP
rs1374505231 896 dbSNP
rs139775213 900 dbSNP
rs1451027906 906 dbSNP
rs193068181 909 dbSNP
rs946507265 924 dbSNP
rs1022692614 926 dbSNP
rs1039468516 935 dbSNP
rs17129455 940 dbSNP
rs1162247936 942 dbSNP
rs1408426233 948 dbSNP
rs1178892244 949 dbSNP
rs372495516 964 dbSNP
rs777991244 973 dbSNP
rs116809966 976 dbSNP
rs528493941 997 dbSNP
rs1439574462 1005 dbSNP
rs558613873 1018 dbSNP
rs1317916674 1021 dbSNP
rs1286707204 1022 dbSNP
rs887395042 1025 dbSNP
rs1382632422 1026 dbSNP
rs1316317567 1030 dbSNP
rs370921223 1033 dbSNP
rs1452778010 1037 dbSNP
rs1380695938 1044 dbSNP
rs551725523 1045 dbSNP
rs1286815731 1054 dbSNP
rs1452531316 1057 dbSNP
rs1345567877 1062 dbSNP
rs571212425 1067 dbSNP
rs536907163 1070 dbSNP
rs1160191790 1072 dbSNP
rs955941888 1073 dbSNP
rs556778238 1076 dbSNP
rs1422491777 1077 dbSNP
rs1004418702 1081 dbSNP
rs1017103546 1082 dbSNP
rs898672113 1089 dbSNP
rs567120634 1094 dbSNP
rs758036869 1100 dbSNP
rs535968888 1101 dbSNP
rs1013475020 1104 dbSNP
rs1023069030 1117 dbSNP
rs1379646639 1118 dbSNP
rs988691725 1119 dbSNP
rs911763600 1123 dbSNP
rs1262891938 1129 dbSNP
rs971871994 1142 dbSNP
rs981471382 1144 dbSNP
rs1293224311