miRTarBase - #MIRT554378


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pre-miRNA Information
pre-miRNA hsa-mir-7107   
Genomic Coordinates chr12: 121444273 - 121444352
Description Homo sapiens miR-7107 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7107-5p
Sequence 6| UCGGCCUGGGGAGGAGGAAGGG |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782634189 2 dbSNP
rs782536354 3 dbSNP
rs1230027540 4 dbSNP
rs539127530 5 dbSNP
rs782765349 9 dbSNP
rs55671311 10 dbSNP
rs183760300 11 dbSNP
rs782805318 12 dbSNP
rs782108772 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SETD5   
Synonyms -
Description SET domain containing 5
Transcript NM_001080517   
Expression
Putative miRNA Targets on SETD5
3'UTR of SETD5
(miRNA target sites are highlighted)		 
>SETD5|NM_001080517|3'UTR
   1 GGCTTCTGGATTTGGGCAAACAGAACTGAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAACCTAGGCCGAGCA
  81 TATTGCTGAGGAACGGGGGGTACAAGGTGCCAGAGGATTGGGTCTGGTGGACAAGAAACAAGACTTGTGGTCACAATTGG
 161 CCTCTGGCCTTGGAGAAAGCTGTAAATCTTGTCTGAAGCAGAGACTATAAAGAAGTTTCTCCCTGCTGTCAAGGGTACAT
 241 TGTTGACAAGCAAATGGTGTTTCGGTTAGTAACGGTTCTAAGTGCAATGAGTTGTGTTGAAGCCTCCGTCTCCCATCCTT
 321 GCCTGTAGCCCGTAGTCACTTGTGCAGTGAGGACATCTTTTTAAATTTAAAAAAAAAAAAAAAAAAAGTTTTCAAAGGAA
 401 AAAAAGTTAAAAGAGCCAATCTCAAAGCCCCAAGCCATCTGAGTACTGTTAGGGTTTTATGCACTTAAGAAAAAAGGTAG
 481 GTATGTAAATGTTCATCCTAAGACAACCATTCCAAAAGCAGGTATCTGGCCAATGTGTGTCCACCAAGAATACTGTTTAT
 561 CTTTGTCTTAAGATCACCAAGAAATAGGCAAGGATAGTAAAGCTTGGAACCTGCACCAACTGGAGGGTGCCTGGCTCTTT
 641 GAAGAAAAGCTCATGGTCAGCTCTTGATTATTCGGGAGCAGATTATTTGAGTAGATTGTCTGAGCCTCCAACTGTTACCA
 721 TCCTACTCCCCCTTCCCAAGCTATTTCACAGCTCAGTAACCCATGAAGTAAGTAGACAAGAAAAGGAGGAATGAGACATG
 801 ATATAGGCCAATTGCATTGCTACTTACCAGCTTTTGGCAATAAATTTCATTAGGAAGGATACCGAGTGGTTTGGGAATGC
 881 TTCGAATTTTATTTTTTCTACTCCCAATTAATCAGGAGTTGATGATCCCATGAGCAGGACCGCCTCCATGATTGGGGAGC
 961 ATGCACTTGTGACTGCAGGGTAAGAGTGGGAAGATAGGTTTGTGGAGTGGCACCGACAGGACTGTGATTGTGTGTGGGCC
1041 TGCCCCACATTTCTCTGGGGGATGCTTATGTGAGAGTGGGCCCAGTGAAAGAGTTACCAAGCCACCCACACCCCTAACAC
1121 TGTTCTGGATGAGAGATGAGAGCAGACCGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCT
1201 GGAGCCAGCCCAGGTGGGGTACACAATCTTTTTAAATTCCATATGGTTGCCAGCTTATTTCTTTCACTTGTTTACTGTAA
1281 TATCTGGCGTGTTTTTATTTATCTAATTTTGTATTCAGTTATAACCATGGTAGGGGTAGTGAATATATGACAGGTGTAAT
1361 CCCTGGTGCTGCAGTGGACCTTCTTTTCTTTTGGACAAGATAATACTGTGAGTTTCCCTCCTTCCTTCCCTCTAATTTGT
1441 TTTCCTTTTTTCCCCAGCCTCTTGCATCCCCTTCTTTTCTACCCTGTCCTACAACTATCATATGCACAGTCTTCTCTCTT
1521 TGTGTGTGACTGTTACAAAATTTCACTTTTCAAAATCGAAATCAGGTGTTTGCTCAAATGAGGGGAGATTTTTTTTTTTT
1601 TTTTTTTTTTAAATGCTGAGACCTCAGCAGAGTACTTTTCTTTTTGTTGTTTCCCCCACAAACCCATCAGTCTGGGAGAG
1681 CATTGGGAGTGGAAATCATGTTGCCTGGGATGCTGGTTTCTTTGTATATTATATAAAACGTATGTAAATGTCTCTCCATT
1761 TGGGCTGGGGTTTGCATTCTCCCCTTGGCTATTTAACCAAGGGGAGAGGCCAGCGGGCAGGCGGCCCTCACCCTGCCTGG
1841 CACGTGCAGAGACCCCAGCCACTCTGTGTGGGCAGGGTGCTGTCAAGACCAGACCTCTTGGGGGGGTAGGGGCGGGGGGG
1921 TGGGGGGAACTCTTGGAAGGGAAGAAGTATCACTTCTTTCTCAAGTGGAGTGTTTACACCTTGCTGTAACATTTGAACTT
2001 TCACAAGAGATGTAATAATTTTGATAATAAAATTCTTAACCATAATAATCATAAAGTTGAGAAAAAAAAAAAAAAAAAAA
2081 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggGAAG---GA-GGAG-----GGGUCCGGCu 5'
            ||||   || ||||     ||:|||||| 
Target 5' tcCTTCCAGCTGCCTCTGGAACCTAGGCCGa 3'
 47 - 77 148.00 -32.40
2 
miRNA  3' gggAAGGAGGAGGG-----GUCC-GGCu 5'
             ||  |  ||||     |||| ||| 
Target 5' gagTTGATGATCCCATGAGCAGGACCGc 3'
 916 - 943 115.00 -13.50
3 
miRNA  3' ggGAAGG-AGGA--GGG-GUCCGGCu 5'
            || || ||||  ||: :|| ||| 
Target 5' gtCTCCCATCCTTGCCTGTAGCCCGt 3'
 308 - 333 114.00 -21.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1205727 332 ClinVar
COSM8235341 1 COSMIC
COSN14083423 13 COSMIC
COSN14083424 23 COSMIC
COSN31525762 24 COSMIC
COSN31579576 36 COSMIC
COSN30509084 40 COSMIC
COSN30737636 57 COSMIC
COSN7717943 117 COSMIC
COSN20074791 158 COSMIC
COSN20090763 167 COSMIC
COSN16248510 208 COSMIC
COSN31534377 324 COSMIC
COSN20098083 388 COSMIC
COSN26573578 470 COSMIC
COSN31530312 885 COSMIC
COSN28767360 1033 COSMIC
COSN31562037 1149 COSMIC
COSN21091192 1163 COSMIC
COSN31608267 1262 COSMIC
COSN31520668 1276 COSMIC
COSN26635351 1312 COSMIC
COSN15842899 1380 COSMIC
COSN30173223 1564 COSMIC
COSN31529298 1588 COSMIC
COSN26671765 1641 COSMIC
COSN7717954 1665 COSMIC
COSN31607990 1681 COSMIC
COSN6784880 1739 COSMIC
COSN31479518 2024 COSMIC
COSN1972796 2054 COSMIC
rs2279440 737 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1329713055 9 dbSNP
rs1474698023 11 dbSNP
rs770483513 16 dbSNP
rs773789004 20 dbSNP
rs761939358 22 dbSNP
rs929175073 22 dbSNP
rs550369785 23 dbSNP
rs1214819415 28 dbSNP
rs377088655 29 dbSNP
rs1385659623 32 dbSNP
rs1006148417 33 dbSNP
rs1292760205 33 dbSNP
rs1441972515 37 dbSNP
rs775260332 38 dbSNP
rs369475282 42 dbSNP
rs1264897533 47 dbSNP
rs1228094788 48 dbSNP
rs1328074257 65 dbSNP
rs1276078877 74 dbSNP
rs1382862728 75 dbSNP
rs750636537 76 dbSNP
rs756459872 77 dbSNP
rs1422315451 84 dbSNP
rs868476727 88 dbSNP
rs977041496 92 dbSNP
rs1038784995 94 dbSNP
rs1167931292 95 dbSNP
rs562194227 95 dbSNP
rs529596973 96 dbSNP
rs1477687957 98 dbSNP
rs146711037 99 dbSNP
rs1450036067 100 dbSNP
rs574639643 101 dbSNP
rs1341472048 103 dbSNP
rs985209105 103 dbSNP
rs1256068756 104 dbSNP
rs1456637594 104 dbSNP
rs1217826363 105 dbSNP
rs1284901325 106 dbSNP
rs565669026 108 dbSNP
rs766721714 113 dbSNP
rs891465326 119 dbSNP
rs192905198 120 dbSNP
rs1392611645 125 dbSNP
rs1403145720 131 dbSNP
rs1010224544 134 dbSNP
rs1430456464 136 dbSNP
rs1186127024 145 dbSNP
rs561566665 145 dbSNP
rs754344270 146 dbSNP
rs551047652 157 dbSNP
rs1246345930 158 dbSNP
rs1475993773 163 dbSNP
rs569430092 167 dbSNP
rs1182699673 173 dbSNP
rs184678645 174 dbSNP
rs1421882950 176 dbSNP
rs1236386200 193 dbSNP
rs777323321 194 dbSNP
rs1197954327 196 dbSNP
rs1463754229 199 dbSNP
rs1330234619 209 dbSNP
rs1461665145 210 dbSNP
rs913110940 210 dbSNP
rs1406258939 211 dbSNP
rs1264774667 216 dbSNP
rs1428975353 218 dbSNP
rs1217260696 224 dbSNP
rs76610781 229 dbSNP
rs189465678 250 dbSNP
rs1331559497 258 dbSNP
rs1002354211 264 dbSNP
rs1045657575 265 dbSNP
rs1033821925 273 dbSNP
rs1315808886 274 dbSNP
rs573794988 275 dbSNP
rs1407401032 282 dbSNP
rs992205248 283 dbSNP
rs906519093 284 dbSNP
rs1413111362 288 dbSNP
rs1424791294 303 dbSNP
rs1263982154 306 dbSNP
rs1159395042 308 dbSNP
rs142730352 309 dbSNP
rs1378559282 311 dbSNP
rs1055189067 322 dbSNP
rs1461764654 323 dbSNP
rs888538804 330 dbSNP
rs11928554 332 dbSNP
rs1448110737 333 dbSNP
rs1284647715 335 dbSNP
rs1015769449 344 dbSNP
rs1196405970 345 dbSNP
rs1206550014 356 dbSNP
rs1350980361 359 dbSNP
rs770698236 366 dbSNP
rs779767477 366 dbSNP
rs62246322 367 dbSNP
rs1384260139 368 dbSNP
rs1491582899 368 dbSNP
rs1158183239 369 dbSNP
rs1358855217 369 dbSNP
rs1415925103 369 dbSNP
rs1445291903 369 dbSNP
rs1491513219 369 dbSNP
rs5846639 369 dbSNP
rs867499586 369 dbSNP
rs909156144 369 dbSNP
rs62964260 370 dbSNP
rs998425645 371 dbSNP
rs943170833 372 dbSNP
rs1487144301 376 dbSNP
rs1038860329 387 dbSNP
rs1170334185 389 dbSNP
rs1400818351 390 dbSNP
rs911067777 394 dbSNP
rs753011240 399 dbSNP
rs1360942208 400 dbSNP
rs1287064652 401 dbSNP
rs1227114996 402 dbSNP
rs1299925614 403 dbSNP
rs1396086501 406 dbSNP
rs1029943851 407 dbSNP
rs1402224991 408 dbSNP
rs1399147592 411 dbSNP
rs1283615464 412 dbSNP
rs953714441 417 dbSNP
rs1351710815 419 dbSNP
rs1162699452 424 dbSNP
rs1420137656 432 dbSNP
rs985543164 440 dbSNP
rs933020086 442 dbSNP
rs1262076214 443 dbSNP
rs1255511497 449 dbSNP
rs116540535 452 dbSNP
rs1219524526 457 dbSNP
rs546233346 460 dbSNP
rs1220177177 472 dbSNP
rs564541524 473 dbSNP
rs957349763 479 dbSNP
rs752156125 481 dbSNP
rs745472041 482 dbSNP
rs1044353091 484 dbSNP
rs1277909579 485 dbSNP
rs913058473 490 dbSNP
rs1269868508 501 dbSNP
rs1405796548 503 dbSNP
rs1434571174 506 dbSNP
rs949914291 507 dbSNP
rs1172698519 510 dbSNP
rs1463967355 519 dbSNP
rs1422667219 521 dbSNP
rs981303312 522 dbSNP
rs927218318 523 dbSNP
rs1196283576 529 dbSNP
rs1434610170 531 dbSNP
rs1376617415 534 dbSNP
rs1419768821 538 dbSNP
rs1480654910 545 dbSNP
rs1239425876 546 dbSNP
rs147980693 556 dbSNP
rs1160441092 562 dbSNP
rs1055540235 567 dbSNP
rs1358558733 568 dbSNP
rs1418949073 575 dbSNP
rs888495031 577 dbSNP
rs769523999 584 dbSNP
rs191204680 585 dbSNP
rs1037147302 588 dbSNP
rs897310152 593 dbSNP
rs1369400482 600 dbSNP
rs1218765729 607 dbSNP
rs1374193542 611 dbSNP
rs998373220 613 dbSNP
rs562301351 620 dbSNP
rs1399450173 628 dbSNP
rs1337211595 646 dbSNP
rs1013616960 653 dbSNP
rs1029885811 661 dbSNP
rs1174952898 666 dbSNP
rs1419250731 667 dbSNP
rs1381639245 670 dbSNP
rs74981768 674 dbSNP
rs1006517286 675 dbSNP
rs1238091240 680 dbSNP
rs950759275 682 dbSNP
rs576381521 699 dbSNP
rs984837854 701 dbSNP
rs775320962 712 dbSNP
rs988504924 715 dbSNP
rs1311638353 716 dbSNP
rs1238038607 720 dbSNP
rs548049653 721 dbSNP
rs1242424435 724 dbSNP
rs1020013620 727 dbSNP
rs1376128361 730 dbSNP
rs1283889818 732 dbSNP
rs141809438 733 dbSNP
rs1223820193 734 dbSNP
rs1267659761 736 dbSNP
rs2279440 737 dbSNP
rs1362059183 741 dbSNP
rs974661809 743 dbSNP
rs1189162185 747 dbSNP
rs1380271787 757 dbSNP
rs923068669 762 dbSNP
rs1426027163 764 dbSNP
rs927195658 769 dbSNP
rs1439860330 773 dbSNP
rs937254666 774 dbSNP
rs774368796 778 dbSNP
rs1179971574 783 dbSNP
rs1377904131 800 dbSNP
rs1214592930 805 dbSNP
rs1353113485 810 dbSNP
rs1266057353 812 dbSNP
rs984760734 815 dbSNP
rs1338561841 821 dbSNP
rs1311825470 825 dbSNP
rs532733025 827 dbSNP
rs1342044263 829 dbSNP
rs1295932975 830 dbSNP
rs913007181 836 dbSNP
rs947135716 839 dbSNP
rs1165365120 847 dbSNP
rs1164435746 849 dbSNP
rs1459954650 858 dbSNP
rs1367219099 860 dbSNP
rs1164571813 861 dbSNP
rs762018541 864 dbSNP
rs79402583 865 dbSNP
rs1268152275 866 dbSNP
rs777350114 870 dbSNP
rs934112818 873 dbSNP
rs150583070 884 dbSNP
rs1219054294 885 dbSNP
rs1319775086 885 dbSNP
rs773618963 886 dbSNP
rs1276017903 892 dbSNP
rs938230489 903 dbSNP
rs1055337101 907 dbSNP
rs1325014299 908 dbSNP
rs1384541879 916 dbSNP
rs1389250745 931 dbSNP
rs760921071 932 dbSNP
rs1456188057 940 dbSNP
rs558257432 942 dbSNP
rs1007544650 943 dbSNP
rs1426249341 945 dbSNP
rs1054742587 950 dbSNP
rs772490137 954 dbSNP
rs576781241 958 dbSNP
rs1449227785 962 dbSNP
rs1307207715 977 dbSNP
rs540741668 979 dbSNP
rs1026803937 980 dbSNP
rs1201156446 982 dbSNP
rs1229437403 984 dbSNP
rs886497986 995 dbSNP
rs1199222919 998 dbSNP
rs1315435824 999 dbSNP
rs1320350705 1015 dbSNP
rs536759454 1016 dbSNP
rs754217220 1017 dbSNP
rs1345336074 1023 dbSNP
rs17081119 1033 dbSNP
rs1252179809 1041 dbSNP
rs971125285 1049 dbSNP
rs1016230306 1050 dbSNP
rs1309284110 1057 dbSNP
rs1448171729 1058 dbSNP
rs1002668004 1061 dbSNP
rs1200086556 1066 dbSNP
rs1235879589 1068 dbSNP
rs1456906957 1071 dbSNP
rs765737097 1078 dbSNP
rs567432262 1087 dbSNP
rs574228410 1088 dbSNP
rs1030275538 1113 dbSNP
rs909149893 1117 dbSNP
rs954512314 1126 dbSNP
rs988630435 1130 dbSNP
rs962674669 1136 dbSNP
rs972736980 1137 dbSNP
rs756780660 1149 dbSNP
rs139957215 1150 dbSNP
rs780656569 1155 dbSNP
rs1197819176 1157 dbSNP
rs918634598 1169 dbSNP
rs1442816909 1172 dbSNP
rs1280410851 1184 dbSNP
rs913074178 1195 dbSNP
rs1467429792 1198 dbSNP
rs1309437131 1206 dbSNP
rs1329528894 1219 dbSNP
rs1399737544 1228 dbSNP
rs934059899 1241 dbSNP
rs553196519 1242 dbSNP
rs745544730 1244 dbSNP
rs1341469677 1255 dbSNP
rs1377623903 1258 dbSNP
rs1336497420 1273 dbSNP
rs1412988643 1276 dbSNP
rs755783693 1289 dbSNP
rs571584641 1290 dbSNP
rs1279256337 1293 dbSNP
rs542792700 1294 dbSNP
rs561194565 1295 dbSNP
rs1220130466 1297 dbSNP
rs926953563 1305 dbSNP
rs937048761 1318 dbSNP
rs1055285391 1328 dbSNP
rs1473048656 1330 dbSNP
rs1436808511 1343 dbSNP
rs1185127275 1353 dbSNP
rs1441556392 1355 dbSNP
rs1286247532 1398 dbSNP
rs745609275 1399 dbSNP
rs539794900 1401 dbSNP
rs1284635162 1425 dbSNP
rs942904830 1429 dbSNP
rs1047868796 1431 dbSNP
rs1055090558 1432 dbSNP
rs1286380463 1444 dbSNP
rs1446267241 1447 dbSNP
rs893400136 1451 dbSNP
rs1482248894 1453 dbSNP
rs1299058341 1457 dbSNP
rs1006273867 1462 dbSNP
rs1358710604 1468 dbSNP
rs779766702 1472 dbSNP
rs1158407418 1473 dbSNP
rs1405941633 1482 dbSNP
rs1037826146 1484 dbSNP
rs1009821694 1485 dbSNP
rs749117288 1493 dbSNP
rs1263568365 1495 dbSNP
rs1478679446 1498 dbSNP
rs1261849097 1504 dbSNP
rs1221640819 1505 dbSNP
rs531876765 1505 dbSNP
rs1041364690 1507 dbSNP
rs1292625101 1510 dbSNP
rs866321526 1515 dbSNP
rs1168878380 1517 dbSNP
rs1334650730 1520 dbSNP
rs1279167032 1521 dbSNP
rs1220712740 1531 dbSNP
rs1423194935 1536 dbSNP
rs906913450 1537 dbSNP
rs1178357199 1538 dbSNP
rs900483176 1542 dbSNP
rs996205205 1546 dbSNP
rs1030349081 1547 dbSNP
rs954585532 1550 dbSNP
rs1010571508 1555 dbSNP
rs1003023845 1558 dbSNP
rs1034128168 1559 dbSNP
rs1418341896 1562 dbSNP
rs1191304083 1570 dbSNP
rs1489190997 1572 dbSNP
rs1244437276 1576 dbSNP
rs1212376044 1582 dbSNP
rs918525009 1587 dbSNP
rs1299310068 1588 dbSNP
rs958761513 1588 dbSNP
rs1219985843 1589 dbSNP
rs1259177433 1589 dbSNP
rs1273082259 1589 dbSNP
rs1316337881 1589 dbSNP
rs1333193776 1589 dbSNP
rs1369857190 1589 dbSNP
rs1400922680 1589 dbSNP
rs1440096464 1589 dbSNP
rs1463834365 1589 dbSNP
rs58994037 1589 dbSNP
rs764550942 1589 dbSNP
rs968990818 1593 dbSNP
rs558189001 1598 dbSNP
rs1006067588 1605 dbSNP
rs1176380333 1609 dbSNP
rs1016155492 1611 dbSNP
rs1422466172 1611 dbSNP
rs1454275660 1611 dbSNP
rs1342849458 1612 dbSNP
rs978532076 1613 dbSNP
rs1277892122 1614 dbSNP
rs1338380512 1615 dbSNP
rs1479875579 1618 dbSNP
rs927070029 1623 dbSNP
rs1280192506 1635 dbSNP
rs1309906363 1636 dbSNP
rs929839310 1641 dbSNP
rs550073941 1647 dbSNP
rs1276656932 1650 dbSNP
rs961957537 1653 dbSNP
rs1489195641 1654 dbSNP
rs1311335297 1657 dbSNP
rs1444434853 1658 dbSNP
rs992426166 1664 dbSNP
rs972014612 1666 dbSNP
rs918582148 1667 dbSNP
rs1467314291 1681 dbSNP
rs916933123 1684 dbSNP
rs949624472 1690 dbSNP
rs1419750636 1692 dbSNP
rs1381574527 1700 dbSNP
rs1181087279 1704 dbSNP
rs1417781123 1706 dbSNP
rs1048457881 1711 dbSNP
rs1250272358 1713 dbSNP
rs908030659 1714 dbSNP
rs1484396489 1717 dbSNP
rs1262147722 1727 dbSNP
rs955386104 1740 dbSNP
rs1354545020 1741 dbSNP
rs1047769550 1751 dbSNP
rs1423202196 1753 dbSNP
rs1316259643 1755 dbSNP
rs911326608 1757 dbSNP
rs1397530525 1765 dbSNP
rs1037774462 1769 dbSNP
rs576543991 1774 dbSNP
rs764125151 1777 dbSNP
rs1363013863 1778 dbSNP
rs543896801 1798 dbSNP
rs1400186944 1804 dbSNP
rs1361902985 1806 dbSNP
rs1054636023 1807 dbSNP
rs914783754 1808 dbSNP
rs1466379445 1812 dbSNP
rs555611242 1816 dbSNP
rs890459361 1819 dbSNP
rs1425897181 1820 dbSNP
rs1041981703 1823 dbSNP
rs1020660215 1825 dbSNP
rs927978987 1831 dbSNP
rs1436808161 1844 dbSNP
rs1276248890 1846 dbSNP
rs1203465645 1848 dbSNP
rs939472848 1853 dbSNP
rs1485526674 1866 dbSNP
rs1364951917 1898 dbSNP
rs1246839893 1900 dbSNP
rs1265938458 1900 dbSNP
rs988595233 1900 dbSNP
rs1000015198 1901 dbSNP
rs1034160627 1902 dbSNP
rs958425973 1903 dbSNP
rs1232951043 1907 dbSNP
rs1294650242 1908 dbSNP
rs1459841618 1908 dbSNP
rs1055198586 1909 dbSNP
rs1248368551 1909 dbSNP
rs992540942 1913 dbSNP
rs1379282573 1914 dbSNP
rs763232134 1914 dbSNP
rs7635794 1914 dbSNP
rs77085802 1915 dbSNP
rs77280788 1918 dbSNP
rs75718126 1919 dbSNP
rs1268097154 1920 dbSNP
rs1171415216 1922 dbSNP
rs867496023 1922 dbSNP
rs1272379454 1924 dbSNP
rs776738661 1926 dbSNP
rs916882257 1930 dbSNP
rs1268020089 1931 dbSNP
rs1283355355 1932 dbSNP
rs1451936641 1934 dbSNP
rs13085737 1935 dbSNP
rs1331207524 1935 dbSNP
rs1302693935 1944 dbSNP
rs951157812 1945 dbSNP
rs1325702870 1947 dbSNP
rs1466451116 1957 dbSNP
rs1402850004 1959 dbSNP
rs1166404769 1963 dbSNP
rs1458439842 1965 dbSNP
rs1378290820 1966 dbSNP
rs13085756 1972 dbSNP
rs13085758 1975 dbSNP
rs983721357 1978 dbSNP
rs1245186153 1991 dbSNP
rs1453940409 1994 dbSNP
rs906861192 2002 dbSNP
rs1179072227 2013 dbSNP
rs1458940363 2035 dbSNP
rs1270569355 2042 dbSNP
rs942307101 2046 dbSNP
rs973542452 2061 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55209.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000402198.1 | 3UTR | AAUGAGCCCAUAGCUGCUUCCUUCCAGCUGCCUCUGGAACCUAGGCCGAGCAUAUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
144 hsa-miR-7107-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060580 CCND1 cyclin D1 2 4
MIRT451035 ZNF610 zinc finger protein 610 2 2
MIRT485711 CASP16 caspase 16, pseudogene 2 8
MIRT488402 TDRKH tudor and KH domain containing 2 2
MIRT492084 TCF21 transcription factor 21 2 2
MIRT504213 VAV3 vav guanine nucleotide exchange factor 3 2 13
MIRT505723 SERTAD3 SERTA domain containing 3 2 4
MIRT509007 FBXO6 F-box protein 6 2 2
MIRT509843 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT514761 RBM4B RNA binding motif protein 4B 2 2
MIRT515664 LRRC27 leucine rich repeat containing 27 2 2
MIRT516316 F8A2 coagulation factor VIII associated 2 2 2
MIRT516342 F8A3 coagulation factor VIII associated 3 2 2
MIRT517139 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT518746 C1orf35 chromosome 1 open reading frame 35 2 2
MIRT519299 MLH1 mutL homolog 1 2 2
MIRT521527 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT531756 TXK TXK tyrosine kinase 2 2
MIRT542208 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542235 FUT9 fucosyltransferase 9 2 2
MIRT542791 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT554378 SETD5 SET domain containing 5 2 2
MIRT569908 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570222 SLC27A1 solute carrier family 27 member 1 2 2
MIRT570976 RGS19 regulator of G protein signaling 19 2 2
MIRT573046 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT574954 Vav3 vav 3 oncogene 2 8
MIRT609297 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT612990 GBX2 gastrulation brain homeobox 2 2 2
MIRT613851 SHB SH2 domain containing adaptor protein B 2 2
MIRT613935 POLR3A RNA polymerase III subunit A 2 2
MIRT614243 WDR53 WD repeat domain 53 2 4
MIRT615158 SPIB Spi-B transcription factor 2 2
MIRT616145 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT616389 C1orf87 chromosome 1 open reading frame 87 2 2
MIRT617737 ATCAY ATCAY, caytaxin 2 4
MIRT621449 TCN2 transcobalamin 2 2 2
MIRT625784 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT628556 MELK maternal embryonic leucine zipper kinase 2 2
MIRT632041 ZNF430 zinc finger protein 430 2 2
MIRT634937 GTF2H2C GTF2H2 family member C 2 4
MIRT637208 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT637610 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT637832 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638107 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT638387 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT641689 SPCS1 signal peptidase complex subunit 1 2 2
MIRT642611 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643850 LACTB lactamase beta 2 4
MIRT649575 PALD1 phosphatase domain containing, paladin 1 2 2
MIRT649860 WDR12 WD repeat domain 12 2 2
MIRT651026 ZNF699 zinc finger protein 699 2 2
MIRT652336 TMOD3 tropomodulin 3 2 4
MIRT653286 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT656292 METTL14 methyltransferase like 14 2 2
MIRT656458 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT659539 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661537 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT668042 GTPBP10 GTP binding protein 10 2 2
MIRT668147 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668800 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669818 STOML1 stomatin like 1 2 2
MIRT670490 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670615 NPHP1 nephrocystin 1 2 2
MIRT670892 CYTIP cytohesin 1 interacting protein 2 2
MIRT670943 LIPG lipase G, endothelial type 2 2
MIRT671268 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671903 GBP4 guanylate binding protein 4 2 2
MIRT672239 ABHD15 abhydrolase domain containing 15 2 2
MIRT672326 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT673113 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT674412 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT677718 IRF1 interferon regulatory factor 1 2 2
MIRT678585 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678726 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679338 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT679614 RRP36 ribosomal RNA processing 36 2 2
MIRT679695 SLC1A5 solute carrier family 1 member 5 2 4
MIRT679715 RPL24 ribosomal protein L24 2 2
MIRT680065 CD96 CD96 molecule 2 2
MIRT683379 ESR2 estrogen receptor 2 2 2
MIRT683683 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683865 OCIAD1 OCIA domain containing 1 2 2
MIRT684073 TLR7 toll like receptor 7 2 2
MIRT684126 CEP104 centrosomal protein 104 2 2
MIRT684485 GPR137B G protein-coupled receptor 137B 2 2
MIRT684736 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684778 MYO1F myosin IF 2 2
MIRT685028 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT685189 DCTN5 dynactin subunit 5 2 2
MIRT685307 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685514 MSH3 mutS homolog 3 2 2
MIRT685702 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685944 PTGIS prostaglandin I2 synthase 2 2
MIRT686311 VPS53 VPS53, GARP complex subunit 2 2
MIRT686686 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT687641 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687923 HOOK3 hook microtubule tethering protein 3 2 2
MIRT688117 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688460 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688629 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT688823 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689117 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689166 ZNF665 zinc finger protein 665 2 2
MIRT690070 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690733 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT691324 KIAA1841 KIAA1841 2 2
MIRT691517 ZNF682 zinc finger protein 682 2 2
MIRT691607 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692314 RFK riboflavin kinase 2 2
MIRT692376 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692436 METTL8 methyltransferase like 8 2 2
MIRT692782 SYNPO2L synaptopodin 2 like 2 2
MIRT693136 THEM4 thioesterase superfamily member 4 2 2
MIRT693422 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT693871 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694049 PRIM1 DNA primase subunit 1 2 2
MIRT694092 KIAA0930 KIAA0930 2 2
MIRT694190 ZNF347 zinc finger protein 347 2 2
MIRT695177 SLC25A33 solute carrier family 25 member 33 2 2
MIRT696180 GNB5 G protein subunit beta 5 2 2
MIRT697387 ZMAT3 zinc finger matrin-type 3 2 2
MIRT698924 SPEM1 spermatid maturation 1 2 2
MIRT699314 SLC35F5 solute carrier family 35 member F5 2 4
MIRT701106 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701575 MYPN myopalladin 2 2
MIRT701825 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702047 METTL21A methyltransferase like 21A 2 2
MIRT703034 HAS2 hyaluronan synthase 2 2 4
MIRT704143 DNAL1 dynein axonemal light chain 1 2 2
MIRT704759 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705079 C4orf29 abhydrolase domain containing 18 2 2
MIRT705346 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706104 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT709070 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709534 ZBED1 zinc finger BED-type containing 1 2 2
MIRT712356 NAT14 N-acetyltransferase 14 (putative) 2 2
MIRT713713 PAOX polyamine oxidase 2 2
MIRT714304 ZNF454 zinc finger protein 454 2 2
MIRT714919 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT715792 TBL3 transducin beta like 3 2 2
MIRT717376 RBM41 RNA binding motif protein 41 2 2
MIRT719069 ACOX1 acyl-CoA oxidase 1 2 2
MIRT724548 HAUS2 HAUS augmin like complex subunit 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7107-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-7107-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-7107-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-7107-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-7107-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-7107-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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