pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol ROBO1   
Synonyms DUTT1, SAX3
Description roundabout guidance receptor 1
Transcript NM_001145845   
Other Transcripts NM_002941 , NM_133631   
Expression
Putative miRNA Targets on ROBO1
3'UTR of ROBO1
(miRNA target sites are highlighted)
>ROBO1|NM_001145845|3'UTR
   1 AGACAACCAAGAGGCTTATGAGATCTAATGTGAAAATCATCACTCAAGATGCCTCCTGTCAGATGACACATGACGCCAGA
  81 TAAAATGTTCAGTGCAATCAGAGTGTACAAATTGTCGTTTTTATTCCTCTTATTGGGATATCATTTTAAAAACTTTATTG
 161 GGTTTTTATTGTTGTTGTTTGATCCCTAACCCTACAAAGAGCCTTCCTATTCCCCTCGCTGTTGGAGCAAACCATTATAC
 241 CTTACTTCCAGCAAGCAAAGTGCTTTGACTTCTTGCTTCAGTCATCAGCCAGCAAGAGGGAACAAAACTGTTCTTTTGCA
 321 TTTTGCCGCTGAGATATGGCATTGCACTGCTTATATGCCAAGCTAATTTATAGCAAGATATTGATCAAATATAGAAAGTT
 401 GATATTCAACCTCACAAGGGCTCTCAAAGTATAATCTTTCTATAGCCAACTGCTAATGCAAATTAAAACATATTTCATTT
 481 TAACATGATTTCAAAATCAGTTTTTCATACTACCCTTTGCTGGAAGAAACTAAAAATATAGCAAATGCAGAACCACAAAC
 561 AATTCGAATGGGGTAGAAACATTGTAAATATTTACTCTTTGCAAACCCTGGTGGTATTTTATTTTGGCTTCATTTCAATC
 641 ATTGAAGTATATTCTTATTGGAAATGTACTTTTGGATAAGTAGGGCTAAGCCAGTTGGATCTCTGGTTGTCTAGTCATTG
 721 TCATAAGTAAACCTAGTAAAACCTTGTTCTATTTTTCAATCATCAAAAAGTAATTATAAATACGTATTACAAACAAGTGG
 801 ATGTTTTTAATGACCAATTGAGTAAGAACATCCCTGTCTTAACTGGCCTAAATTTCTTCTGGTAGTGTCAGTTCAACTTT
 881 CAGAAGTGCCACTTAAGGAAGTTTGATTTTTGTTTTTGTAATGCACTGTTTTTAATCTCTCTCTCTTTTTTTTTTTTTTT
 961 TTGGTTTTAAAAGCACAATCACTAAACTTTATTTGTAAACCATTGTAACTATTAACCTTTTTTGTCTTATTGAAAAAAAA
1041 AATGTTGAGAAGCGTTTTTAACCTGTTTTGTTAATGCTCTATGTTTGTATTTGGAATATTTGAATAATGACAGATGGTGA
1121 AGTAACATGCATACTTTATTGTGGGCCATGAACCAAATGGTTCTTACTTTTCCTGGACTTAAAGAAAAAAAGAGGTTTAA
1201 GTTTGTTGTGGCCAATGTCGAAACCTACAAGATTTCCTTAAAATCTCTAATAGAGGCATTACTTGCTTTCAATTGACAAA
1281 TGATGCCCTCTGACTAGTAGATTTCTATGATCCTTTTTTGTCATTTTATGAATATCATTGATTTTATAATTGGTGCTATT
1361 TGAAGAAAAAAATGTACATTTATTCATAGATAGATAAGTATCAGGTCTGACCCCAGTGGAAAACAAAGCCAAACAAAACT
1441 GAACCACAAAAAAAAAGGCTGGTGTTCACCAAAACCAAACTTGTTCATTTAGATAATTTGAAAAAGTTCCATAGAAAAGG
1521 CGTGCAGTACTAAGGGAACAATCCATGTGATTAATGTTTTCATTATGTTCATGTAAGAAGCCCCTTATTTTTAGCCATAA
1601 TTTTGCATACTGAAAATCCAATAATCAGAAAAGTAATTTTGTCACATTATTTATTAAAAATGTTCTCAAATACATAAAAA
1681 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGU---UUUCA-----UUAACACCAAAAa 5'
            |||||   |:|||     |||||| ||||| 
Target 5' caGTGCAATCAGAGTGTACAAATTGTCGTTTTt 3'
90 - 122 151.00 -14.30
2
miRNA  3' acCACGUU---UUCAUUAACACCAAAAa 5'
            |||| |   ||| || | || |||| 
Target 5' aaGTGCCACTTAAGGAAGTTTGATTTTt 3'
884 - 911 139.00 -6.00
3
miRNA  3' accACGUUUU--CAUUAACACCAAAAa 5'
             | :||||   | |||  |||||| 
Target 5' catTTTAAAAACTTTATT-GGGTTTTt 3'
142 - 167 127.00 -7.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31533473 1 COSMIC
COSN30497438 10 COSMIC
COSN16833654 15 COSMIC
COSN166935 16 COSMIC
COSN30504517 32 COSMIC
COSN31553038 43 COSMIC
COSN31499408 60 COSMIC
COSN30133469 62 COSMIC
COSN30155841 62 COSMIC
COSN14081632 75 COSMIC
COSN510460 95 COSMIC
COSN30526770 106 COSMIC
COSN31588602 116 COSMIC
COSN14081628 117 COSMIC
COSN30135722 147 COSMIC
COSN30117437 153 COSMIC
COSN24387919 218 COSMIC
COSN28230255 257 COSMIC
COSN31959876 284 COSMIC
COSN30161255 303 COSMIC
COSN31486137 313 COSMIC
COSN26576811 342 COSMIC
COSN31595752 344 COSMIC
COSN31563087 347 COSMIC
COSN23050212 363 COSMIC
COSN31519547 377 COSMIC
COSN20098689 399 COSMIC
COSN18851571 427 COSMIC
COSN17078443 432 COSMIC
COSN31572670 535 COSMIC
COSN28373662 653 COSMIC
COSN30173775 820 COSMIC
COSN7709904 828 COSMIC
COSN31608579 856 COSMIC
COSN26643429 881 COSMIC
COSN26584400 944 COSMIC
COSN20098685 945 COSMIC
COSN26579763 945 COSMIC
COSN20098686 946 COSMIC
COSN31572402 946 COSMIC
COSN25793371 947 COSMIC
COSN26641862 973 COSMIC
COSN25914616 1024 COSMIC
COSN20098684 1033 COSMIC
COSN8368074 1153 COSMIC
COSN21069048 1173 COSMIC
COSN31513940 1219 COSMIC
COSN22496958 1492 COSMIC
COSN32057046 1505 COSMIC
COSN31519824 1570 COSMIC
COSN29657245 1636 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1208828116 3 dbSNP
rs1290377519 4 dbSNP
rs3207673 5 dbSNP
rs752750568 18 dbSNP
rs765272231 19 dbSNP
rs557214338 24 dbSNP
rs772247553 25 dbSNP
rs372554809 30 dbSNP
rs191046760 31 dbSNP
rs1373223209 37 dbSNP
rs769129302 39 dbSNP
rs554606843 43 dbSNP
rs766266308 45 dbSNP
rs749615667 49 dbSNP
rs368427468 53 dbSNP
rs1380216117 55 dbSNP
rs1043717173 61 dbSNP
rs1456614580 63 dbSNP
rs1162861796 70 dbSNP
rs1393260098 71 dbSNP
rs1028896657 74 dbSNP
rs534590561 75 dbSNP
rs1340465039 77 dbSNP
rs1010867050 97 dbSNP
rs1297137771 101 dbSNP
rs1457785063 102 dbSNP
rs1243672319 104 dbSNP
rs974854346 105 dbSNP
rs1361408453 108 dbSNP
rs773964355 116 dbSNP
rs957849974 117 dbSNP
rs1486168592 123 dbSNP
rs912032490 123 dbSNP
rs113428217 124 dbSNP
rs983671655 128 dbSNP
rs186459709 129 dbSNP
rs1444213631 130 dbSNP
rs879062785 133 dbSNP
rs758282241 134 dbSNP
rs771630699 136 dbSNP
rs1027292098 138 dbSNP
rs1454798939 145 dbSNP
rs1291119716 148 dbSNP
rs879589051 152 dbSNP
rs552217155 156 dbSNP
rs969747847 157 dbSNP
rs1384556364 161 dbSNP
rs1210220740 164 dbSNP
rs1308305545 171 dbSNP
rs1317263681 177 dbSNP
rs1488086428 180 dbSNP
rs1254162997 182 dbSNP
rs554021428 184 dbSNP
rs1046039256 185 dbSNP
rs1203119842 190 dbSNP
rs1243773245 197 dbSNP
rs1023169921 198 dbSNP
rs1176967279 199 dbSNP
rs1380127007 205 dbSNP
rs1420033491 210 dbSNP
rs1207293943 217 dbSNP
rs75780073 218 dbSNP
rs894851806 221 dbSNP
rs1407608165 225 dbSNP
rs1444179453 228 dbSNP
rs1330243544 236 dbSNP
rs1373860895 237 dbSNP
rs1048618311 243 dbSNP
rs1225255291 245 dbSNP
rs895640958 246 dbSNP
rs540772086 248 dbSNP
rs750308165 251 dbSNP
rs1224000111 261 dbSNP
rs1263875388 261 dbSNP
rs998782294 262 dbSNP
rs1224735723 275 dbSNP
rs1232512425 288 dbSNP
rs931571562 288 dbSNP
rs1332465304 289 dbSNP
rs765254682 297 dbSNP
rs1037623926 298 dbSNP
rs1265646182 305 dbSNP
rs944107658 308 dbSNP
rs1430857209 317 dbSNP
rs534177196 327 dbSNP
rs550773579 328 dbSNP
rs531053590 333 dbSNP
rs1291601394 336 dbSNP
rs914611405 338 dbSNP
rs1369974801 344 dbSNP
rs1366606932 347 dbSNP
rs1166828876 352 dbSNP
rs1467716108 359 dbSNP
rs562405440 361 dbSNP
rs761088832 362 dbSNP
rs763353866 363 dbSNP
rs1378443998 367 dbSNP
rs568152632 371 dbSNP
rs1216878227 378 dbSNP
rs1272301722 380 dbSNP
rs1432384881 381 dbSNP
rs912081313 389 dbSNP
rs1266567043 391 dbSNP
rs1264098943 394 dbSNP
rs1490283086 396 dbSNP
rs371110152 397 dbSNP
rs367612422 399 dbSNP
rs1200856128 402 dbSNP
rs1271680166 402 dbSNP
rs113692951 404 dbSNP
rs369919627 404 dbSNP
rs1419547647 407 dbSNP
rs1483357223 409 dbSNP
rs1162233463 416 dbSNP
rs1411342699 416 dbSNP
rs989364015 420 dbSNP
rs957945401 429 dbSNP
rs1304658064 430 dbSNP
rs1425059492 430 dbSNP
rs1193585577 432 dbSNP
rs1346579390 436 dbSNP
rs1030818543 442 dbSNP
rs1399263617 445 dbSNP
rs1269701119 447 dbSNP
rs983555398 456 dbSNP
rs1216602508 472 dbSNP
rs978344166 473 dbSNP
rs1359260702 476 dbSNP
rs1223696155 477 dbSNP
rs970618014 478 dbSNP
rs766484625 482 dbSNP
rs920869444 486 dbSNP
rs1215664295 490 dbSNP
rs1487607224 490 dbSNP
rs776660545 496 dbSNP
rs973616532 506 dbSNP
rs141050600 511 dbSNP
rs1232127266 512 dbSNP
rs970134661 519 dbSNP
rs1384224603 521 dbSNP
rs915539852 523 dbSNP
rs1321828804 529 dbSNP
rs1165258846 530 dbSNP
rs1290624703 531 dbSNP
rs1012030268 532 dbSNP
rs746416837 533 dbSNP
rs528468517 536 dbSNP
rs1400089033 537 dbSNP
rs1318869993 540 dbSNP
rs1345925129 557 dbSNP
rs959785742 558 dbSNP
rs1326875901 563 dbSNP
rs894778268 563 dbSNP
rs559501215 565 dbSNP
rs1403090686 566 dbSNP
rs995690185 575 dbSNP
rs897423823 582 dbSNP
rs1449171350 591 dbSNP
rs1468449092 591 dbSNP
rs996742638 597 dbSNP
rs900507076 600 dbSNP
rs1039011817 611 dbSNP
rs1185016281 614 dbSNP
rs1378310375 618 dbSNP
rs1469430197 620 dbSNP
rs1159145655 623 dbSNP
rs764365859 624 dbSNP
rs1173572214 626 dbSNP
rs760870612 626 dbSNP
rs1412629205 627 dbSNP
rs1174400858 637 dbSNP
rs1405391018 638 dbSNP
rs546248707 638 dbSNP
rs1050263944 641 dbSNP
rs1250970111 642 dbSNP
rs1441936637 644 dbSNP
rs1280442739 646 dbSNP
rs1179658204 648 dbSNP
rs932731769 650 dbSNP
rs1256305941 652 dbSNP
rs914537714 653 dbSNP
rs1217932607 654 dbSNP
rs990168338 657 dbSNP
rs920727827 663 dbSNP
rs1323598616 667 dbSNP
rs1038361614 672 dbSNP
rs1235977008 680 dbSNP
rs148128920 683 dbSNP
rs1321007883 690 dbSNP
rs775843486 691 dbSNP
rs978060256 694 dbSNP
rs1270339820 698 dbSNP
rs557151018 699 dbSNP
rs143710335 702 dbSNP
rs1428751588 705 dbSNP
rs1278292638 713 dbSNP
rs1470340964 728 dbSNP
rs759988696 733 dbSNP
rs1394622072 738 dbSNP
rs774876825 743 dbSNP
rs574714289 751 dbSNP
rs1330002652 755 dbSNP
rs1341087820 755 dbSNP
rs959674465 757 dbSNP
rs866465559 759 dbSNP
rs1345670642 763 dbSNP
rs1255541659 765 dbSNP
rs1450634893 766 dbSNP
rs1195980750 770 dbSNP
rs1338370236 770 dbSNP
rs1391122417 774 dbSNP
rs977162529 777 dbSNP
rs1449633831 783 dbSNP
rs1198686177 784 dbSNP
rs1269526382 785 dbSNP
rs1321536347 792 dbSNP
rs1201708556 797 dbSNP
rs959132396 801 dbSNP
rs535379925 802 dbSNP
rs181846806 819 dbSNP
rs534629107 820 dbSNP
rs968548641 824 dbSNP
rs781441406 828 dbSNP
rs1473750149 829 dbSNP
rs1168685251 830 dbSNP
rs1021431035 831 dbSNP
rs565642429 840 dbSNP
rs995119709 850 dbSNP
rs1368499650 858 dbSNP
rs1182450466 866 dbSNP
rs997187189 867 dbSNP
rs1459657392 869 dbSNP
rs1366753183 880 dbSNP
rs1249494381 896 dbSNP
rs1209042232 906 dbSNP
rs1023559504 912 dbSNP
rs1227771991 925 dbSNP
rs1271563467 926 dbSNP
rs1356737639 931 dbSNP
rs1464707789 935 dbSNP
rs1221483609 938 dbSNP
rs1282662307 939 dbSNP
rs1212107944 940 dbSNP
rs1490828099 940 dbSNP
rs963966478 941 dbSNP
rs1427978705 942 dbSNP
rs112456591 943 dbSNP
rs113147148 944 dbSNP
rs112938602 945 dbSNP
rs1163372412 946 dbSNP
rs1442950562 946 dbSNP
rs1019936434 947 dbSNP
rs1386210107 947 dbSNP
rs1427154116 947 dbSNP
rs569462944 947 dbSNP
rs1244732841 948 dbSNP
rs1361299789 948 dbSNP
rs753975440 948 dbSNP
rs1367522172 949 dbSNP
rs1008924201 950 dbSNP
rs890455469 951 dbSNP
rs1205810573 954 dbSNP
rs1434707018 956 dbSNP
rs78600405 961 dbSNP
rs1183193462 963 dbSNP
rs1244186419 963 dbSNP
rs1263889514 963 dbSNP
rs1403222729 963 dbSNP
rs1446809479 963 dbSNP
rs1460176542 963 dbSNP
rs201745120 963 dbSNP
rs35691197 963 dbSNP
rs397875825 963 dbSNP
rs878950734 963 dbSNP
rs1491041963 964 dbSNP
rs995679190 964 dbSNP
rs1389469008 965 dbSNP
rs377441369 965 dbSNP
rs1305957859 976 dbSNP
rs538308245 978 dbSNP
rs1047809773 982 dbSNP
rs1241052927 987 dbSNP
rs1315999468 990 dbSNP
rs1321478839 991 dbSNP
rs962958362 991 dbSNP
rs1406952794 994 dbSNP
rs1391381259 995 dbSNP
rs1250209204 1000 dbSNP
rs1420242958 1001 dbSNP
rs376455803 1003 dbSNP
rs993503056 1004 dbSNP
rs1468826536 1005 dbSNP
rs1176437043 1010 dbSNP
rs899358686 1010 dbSNP
rs767850342 1012 dbSNP
rs747703133 1017 dbSNP
rs1391527271 1024 dbSNP
rs1373750461 1026 dbSNP
rs948885721 1028 dbSNP
rs1457519262 1030 dbSNP
rs1222995877 1032 dbSNP
rs896849178 1038 dbSNP
rs1202658054 1043 dbSNP
rs72399578 1043 dbSNP
rs780847398 1043 dbSNP
rs777677055 1045 dbSNP
rs1240652670 1048 dbSNP
rs1208000597 1051 dbSNP
rs1267381733 1053 dbSNP
rs1480364521 1054 dbSNP
rs1199543745 1063 dbSNP
rs1224252717 1065 dbSNP
rs1008513557 1068 dbSNP
rs1426414436 1069 dbSNP
rs1289785256 1070 dbSNP
rs891255173 1076 dbSNP
rs1049929133 1079 dbSNP
rs1057503667 1081 dbSNP
rs1463330131 1083 dbSNP
rs191850516 1087 dbSNP
rs893240417 1094 dbSNP
rs1405437623 1101 dbSNP
rs1284046389 1108 dbSNP
rs1369789756 1112 dbSNP
rs141646103 1113 dbSNP
rs1268139543 1114 dbSNP
rs1295117841 1115 dbSNP
rs1308229074 1117 dbSNP
rs7626143 1121 dbSNP
rs1223844699 1122 dbSNP
rs1247999662 1123 dbSNP
rs147888141 1126 dbSNP
rs1185642209 1127 dbSNP
rs1042661783 1129 dbSNP
rs1302439558 1130 dbSNP
rs1450890265 1131 dbSNP
rs975301813 1135 dbSNP
rs964202808 1139 dbSNP
rs1425275346 1145 dbSNP
rs949332296 1152 dbSNP
rs1422726229 1166 dbSNP
rs1371819336 1170 dbSNP
rs1168674196 1172 dbSNP
rs917717821 1175 dbSNP
rs1288300158 1181 dbSNP
rs547203174 1182 dbSNP
rs1230839782 1183 dbSNP
rs866128291 1184 dbSNP
rs1313430926 1188 dbSNP
rs1359149859 1188 dbSNP
rs990625403 1189 dbSNP
rs1292640133 1191 dbSNP
rs1214476498 1192 dbSNP
rs1416930044 1192 dbSNP
rs987086538 1192 dbSNP
rs1192631500 1193 dbSNP
rs954711799 1203 dbSNP
rs1268682887 1204 dbSNP
rs959226490 1215 dbSNP
rs186432917 1217 dbSNP
rs973832379 1220 dbSNP
rs899283278 1223 dbSNP
rs961020514 1238 dbSNP
rs181741299 1243 dbSNP
rs376324563 1244 dbSNP
rs894625402 1246 dbSNP
rs1057385703 1249 dbSNP
rs1437613836 1251 dbSNP
rs1334954553 1252 dbSNP
rs1008857747 1256 dbSNP
rs938876516 1257 dbSNP
rs955668714 1263 dbSNP
rs1280993721 1273 dbSNP
rs1453845168 1278 dbSNP
rs1286263414 1282 dbSNP
rs1371847608 1286 dbSNP
rs546227286 1296 dbSNP
rs1028882484 1298 dbSNP
rs1223685275 1300 dbSNP
rs1345428437 1301 dbSNP
rs1282427412 1302 dbSNP
rs1402987591 1303 dbSNP
rs1352266866 1305 dbSNP
rs902871340 1306 dbSNP
rs1440827630 1307 dbSNP
rs1041377595 1314 dbSNP
rs1210149324 1320 dbSNP
rs947023175 1320 dbSNP
rs914351104 1321 dbSNP
rs1230927364 1324 dbSNP
rs975567164 1324 dbSNP
rs1177693989 1328 dbSNP
rs1177760823 1328 dbSNP
rs997006236 1330 dbSNP
rs893333937 1332 dbSNP
rs758418341 1334 dbSNP
rs1405644676 1337 dbSNP
rs1473825035 1338 dbSNP
rs369310390 1339 dbSNP
rs1054544088 1341 dbSNP
rs201270017 1343 dbSNP
rs1177202196 1346 dbSNP
rs1280644059 1347 dbSNP
rs1479682394 1351 dbSNP
rs1221164740 1352 dbSNP
rs1239337974 1352 dbSNP
rs188155841 1356 dbSNP
rs75945484 1359 dbSNP
rs1323853686 1362 dbSNP
rs1201787931 1368 dbSNP
rs972060838 1372 dbSNP
rs527261653 1373 dbSNP
rs963703858 1373 dbSNP
rs903141434 1375 dbSNP
rs1016381825 1383 dbSNP
rs1479384323 1387 dbSNP
rs1197393959 1396 dbSNP
rs1478505787 1397 dbSNP
rs373435593 1397 dbSNP
rs530873739 1397 dbSNP
rs1045747163 1398 dbSNP
rs1174518902 1398 dbSNP
rs1409753706 1398 dbSNP
rs1262208680 1401 dbSNP
rs1372968294 1401 dbSNP
rs758172392 1422 dbSNP
rs949297154 1437 dbSNP
rs1331030351 1440 dbSNP
rs1036246174 1444 dbSNP
rs1223195996 1447 dbSNP
rs1268041535 1456 dbSNP
rs1338273509 1457 dbSNP
rs569723093 1457 dbSNP
rs947077053 1460 dbSNP
rs892787243 1463 dbSNP
rs1452244848 1467 dbSNP
rs749191055 1468 dbSNP
rs1054988672 1472 dbSNP
rs1371569269 1473 dbSNP
rs937842565 1476 dbSNP
rs919793624 1478 dbSNP
rs1448217527 1481 dbSNP
rs1404917016 1483 dbSNP
rs973753792 1483 dbSNP
rs1303063232 1484 dbSNP
rs1390913441 1492 dbSNP
rs961161389 1493 dbSNP
rs942419512 1495 dbSNP
rs1334352646 1498 dbSNP
rs1325515324 1499 dbSNP
rs1435316389 1502 dbSNP
rs543969062 1505 dbSNP
rs1050913769 1506 dbSNP
rs574540806 1508 dbSNP
rs986500613 1519 dbSNP
rs560948405 1521 dbSNP
rs955238220 1522 dbSNP
rs918540211 1526 dbSNP
rs1259694776 1536 dbSNP
rs973951698 1537 dbSNP
rs1189433148 1544 dbSNP
rs1028565048 1550 dbSNP
rs1250356794 1552 dbSNP
rs963416371 1553 dbSNP
rs909167530 1556 dbSNP
rs1417879121 1557 dbSNP
rs1459857450 1559 dbSNP
rs1156337928 1560 dbSNP
rs991608052 1567 dbSNP
rs1416007254 1570 dbSNP
rs541274969 1571 dbSNP
rs1380031183 1585 dbSNP
rs997133718 1594 dbSNP
rs957521053 1595 dbSNP
rs1342227304 1607 dbSNP
rs1033188579 1615 dbSNP
rs998913141 1622 dbSNP
rs1259088082 1628 dbSNP
rs1328560479 1630 dbSNP
rs1209672394 1633 dbSNP
rs760656716 1637 dbSNP
rs1460107394 1644 dbSNP
rs1444143071 1647 dbSNP
rs1257256262 1650 dbSNP
rs1241521716 1653 dbSNP
rs1003065795 1656 dbSNP
rs1362777014 1656 dbSNP
rs967537654 1661 dbSNP
rs1012209586 1662 dbSNP
rs1020583246 1662 dbSNP
rs1468928631 1665 dbSNP
rs1303252025 1667 dbSNP
rs1404055535 1673 dbSNP
rs144605599 1673 dbSNP
rs1214934880 1674 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6091.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000436010.2 | 3UTR | UUUUAAAAGCACAAUCACUAAACUUUAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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