miRTarBase - #MIRT555127


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pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PTPRG   
Synonyms HPTPG, PTPG, R-PTP-GAMMA, RPTPG
Description protein tyrosine phosphatase, receptor type G
Transcript NM_002841   
Expression
Putative miRNA Targets on PTPRG
3'UTR of PTPRG
(miRNA target sites are highlighted)		 
>PTPRG|NM_002841|3'UTR
   1 CTGGAATCCTGAAAGGGCACTTAATTTGTAAACTTCTGAAGACTGAGAACTTTTTTGAGGCCTTTTTTGCCAGACTCTAG
  81 GTTATACAATAACCCAGTTACTTTTTTACACTGATAAAAGTTTTGATATTTATTTTTTGCCATTTTATGTCTTAATGGTA
 161 TCCTACTGAGCATTTGCACCTCTGTTCATTTCACACAGTGAAACGCAATTTTACCTAGTTTGCACTATATGATCAGTGTT
 241 ACTGCCTATAATCTTATACAACAGCAAACCCTGATGTGACATTCCATGACGACATACATGCTACTTTTTTTTAGTTCAAT
 321 ACAGTGAAGGTCTTTGTTATGACAGTGAATATTGCTTTTATTATTATTATTGCTGAAGTGGTTGCATTCTACTAGCAGGC
 401 AATGCTGTACTTTTCTTCAGTCCTCCTCTCCTTTTTATTTTAGGCACTGTTCAATACTGTATGCCTTCTGTATTTTAATG
 481 GAGTGGATAGCATTGTTTTCTTTTACAGACTAGCAGGCTACTGGGACCTAAAAAGGTCTGTTAATGTCATGGCCTTGAAA
 561 CAGTTCCATTTATGCTGGTTAAGAGATCCCTTAAGAAGTTAGAAGGCTTAAGAACTGCTTCATGTGAACATCCCTTATTA
 641 GTTACAAAGTTATATTCACAGTTTTTTAAAAATGTGTCAAAATAAAGGATAACTCTGTATTACAGCTTTCACAGTAGCTA
 721 TGTGGACAATGTGTTATTTCCATTTTGACTCTCTAAAATAGCTACATCCTAAAATCAGGGCTATCTTTAACAATAGCAAG
 801 ATAGCAATATTATATACAACTCAGTTATGAGACCCTTTAGTTATTCTCCATTAATGCTTCTTAGTTTGTAATACCATACC
 881 TCACAGTAGGTAGAAGAATGAAAACTTCTGCAGGTGTGTAATTTTGAAACTAGTCCTCTAAAAATTCCCTATTACTCCTA
 961 TAGCAATCTAATAAAAACTACCTACATAGTTACTGTTTTCTTTCCTTCTTTGCCAAATGTTTTATAATAAATCTCTTAAT
1041 TACATACATTTTTCTACTTAAGATTAAATTGGAAATACTGTCTTAGCAAAAGTCTTGGGACTATCTAAACTCCCACACAT
1121 AGATAAATCTGATTTGGAGAGAGAAATTTAAAATATTTAATTAAAGGTGATACCCACATTTTCAAGTTTTTAAAAGAGGG
1201 AGATGGCTTTGTATGCTTTTGTGTAGTTTAGAACAGATACACATTAGTAAAAGATACCAATAATCATTAGAGCTCAAGGA
1281 AGTTATTAGGTGCAGCCTCTGGAGCCATACTCACGCTGCAGTGCATAATGGGAAAATTAGGAGCATTAATAAGAAATTTC
1361 AGTAGTGTTTGTAAGGAAAATAAGCTACTTACTGAGATCTGTTTCTTCTATTGCATGTTTGCTTTTGAGGGACAGCTTCT
1441 GTCAAAAGTGAAATCATCACCAGAACTGGGCCTGTTAGGAAGAATAGGGTTTTATTTACTTTTTATGTCAATTAACTTCA
1521 ACAAAAAGGCCACGCTGGCTGCTGTCATGCCATCTGGGTATGCATTAAACATTAATGATGATCAGCACTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGACCUACGUUUAAAAu 5'
            || |||  ||:|||| 
Target 5' caCT-GATAAAAGTTTTg 3'
 109 - 125 135.00 -6.30
2 
miRNA  3' agGACCU-AC-GUUUAAAau 5'
            :||||  |  ||||||  
Target 5' atTTGGAGAGAGAAATTTaa 3'
 1132 - 1151 124.00 -6.50
3 
miRNA  3' agGAC--CUACG-UUUAAAAu 5'
            |||  |:||:  |||||| 
Target 5' ttCTGCAGGTGTGTAATTTTg 3'
 906 - 926 122.00 -7.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30474530 10 COSMIC
COSN30118727 16 COSMIC
COSN31576661 25 COSMIC
COSN26991039 27 COSMIC
COSN23093892 58 COSMIC
COSN31535808 83 COSMIC
COSN31581236 123 COSMIC
COSN31596104 125 COSMIC
COSN31549467 193 COSMIC
COSN30159031 205 COSMIC
COSN31545251 232 COSMIC
COSN16318114 251 COSMIC
COSN31514677 313 COSMIC
COSN31589468 422 COSMIC
COSN26585923 464 COSMIC
COSN31606520 501 COSMIC
COSN24299705 511 COSMIC
COSN24299706 524 COSMIC
COSN32056692 689 COSMIC
COSN17076007 976 COSMIC
COSN31962078 995 COSMIC
COSN9556534 1513 COSMIC
COSN1956043 1647 COSMIC
COSN18010449 1676 COSMIC
COSN21061265 1720 COSMIC
COSN25485650 1738 COSMIC
COSN9556535 1783 COSMIC
COSN25086415 2143 COSMIC
COSN9556536 2264 COSMIC
COSN516305 2717 COSMIC
COSN8926653 2734 COSMIC
COSN25652155 3198 COSMIC
COSN27296786 3358 COSMIC
COSN25089914 3387 COSMIC
COSN25820730 3926 COSMIC
COSN25402418 4016 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1371491192 1 dbSNP
rs772600524 10 dbSNP
rs778215512 12 dbSNP
rs747103270 15 dbSNP
rs565878675 16 dbSNP
rs771152015 20 dbSNP
rs1320162967 21 dbSNP
rs776924029 24 dbSNP
rs373489706 26 dbSNP
rs768518924 31 dbSNP
rs1321915284 32 dbSNP
rs1272928427 33 dbSNP
rs774168781 34 dbSNP
rs1004639305 36 dbSNP
rs368879993 37 dbSNP
rs767485096 38 dbSNP
rs1331163266 39 dbSNP
rs1181961303 50 dbSNP
rs773079317 51 dbSNP
rs1040495144 53 dbSNP
rs116271575 55 dbSNP
rs569277010 62 dbSNP
rs1002293174 63 dbSNP
rs1035144142 71 dbSNP
rs1172202017 74 dbSNP
rs1478446918 75 dbSNP
rs1379593254 86 dbSNP
rs1029144960 87 dbSNP
rs751016941 95 dbSNP
rs1464518259 96 dbSNP
rs1249165108 100 dbSNP
rs960815245 114 dbSNP
rs1211165530 126 dbSNP
rs1460255614 133 dbSNP
rs1001070347 141 dbSNP
rs1030962542 143 dbSNP
rs1278427352 144 dbSNP
rs1201401082 146 dbSNP
rs1345200327 159 dbSNP
rs1276274629 161 dbSNP
rs1225521569 169 dbSNP
rs1363883589 175 dbSNP
rs1298241243 177 dbSNP
rs972504137 180 dbSNP
rs1357374809 185 dbSNP
rs569938539 188 dbSNP
rs1333185532 195 dbSNP
rs1374581452 197 dbSNP
rs1412879537 201 dbSNP
rs919246423 201 dbSNP
rs879530446 205 dbSNP
rs984638497 206 dbSNP
rs1390935866 209 dbSNP
rs756787196 211 dbSNP
rs910387779 228 dbSNP
rs1443258302 229 dbSNP
rs780769135 233 dbSNP
rs943244767 238 dbSNP
rs1326923479 246 dbSNP
rs184153852 252 dbSNP
rs1188628444 256 dbSNP
rs1444546893 261 dbSNP
rs1280263985 262 dbSNP
rs1267884486 270 dbSNP
rs917969764 284 dbSNP
rs1340831905 289 dbSNP
rs142945046 291 dbSNP
rs567840899 292 dbSNP
rs1376836664 296 dbSNP
rs1283550571 299 dbSNP
rs1448452266 300 dbSNP
rs927143435 302 dbSNP
rs1306398028 305 dbSNP
rs1429413329 305 dbSNP
rs934406523 305 dbSNP
rs534660221 320 dbSNP
rs1219223432 330 dbSNP
rs1413639340 332 dbSNP
rs1182997883 338 dbSNP
rs1473977646 344 dbSNP
rs892776060 346 dbSNP
rs368060281 353 dbSNP
rs1482487183 354 dbSNP
rs1252128973 355 dbSNP
rs1206619525 356 dbSNP
rs773575370 358 dbSNP
rs745498028 361 dbSNP
rs1289020882 363 dbSNP
rs1228884602 374 dbSNP
rs1358184088 382 dbSNP
rs1408991699 384 dbSNP
rs755864717 385 dbSNP
rs1191127608 400 dbSNP
rs756349826 403 dbSNP
rs1434362587 421 dbSNP
rs907547562 422 dbSNP
rs1349444879 448 dbSNP
rs940311720 449 dbSNP
rs1407522858 456 dbSNP
rs779685068 459 dbSNP
rs1410409811 464 dbSNP
rs1158839910 465 dbSNP
rs905442756 470 dbSNP
rs1412223894 480 dbSNP
rs1002409025 482 dbSNP
rs74337771 484 dbSNP
rs1245681506 486 dbSNP
rs1193186777 496 dbSNP
rs1393477019 497 dbSNP
rs901613803 501 dbSNP
rs1453185148 503 dbSNP
rs1266194075 505 dbSNP
rs749158176 509 dbSNP
rs1432671000 523 dbSNP
rs1227499348 534 dbSNP
rs931742345 536 dbSNP
rs1329664247 537 dbSNP
rs1160234255 541 dbSNP
rs1290442505 541 dbSNP
rs1217751220 544 dbSNP
rs961099970 544 dbSNP
rs577670815 546 dbSNP
rs1051070925 549 dbSNP
rs1026741718 550 dbSNP
rs1387025411 553 dbSNP
rs1320532550 554 dbSNP
rs903990644 560 dbSNP
rs1391369108 575 dbSNP
rs1160825125 590 dbSNP
rs1431036881 590 dbSNP
rs553174062 591 dbSNP
rs1191225741 593 dbSNP
rs1455208347 597 dbSNP
rs1246088800 599 dbSNP
rs1031183323 601 dbSNP
rs1465174952 606 dbSNP
rs1269728456 613 dbSNP
rs964584452 623 dbSNP
rs892483443 624 dbSNP
rs768668011 632 dbSNP
rs1302273846 634 dbSNP
rs1014024896 635 dbSNP
rs1363168626 642 dbSNP
rs1297502345 643 dbSNP
rs1368300591 644 dbSNP
rs1024960215 656 dbSNP
rs1391486194 660 dbSNP
rs923103942 662 dbSNP
rs1465879555 668 dbSNP
rs934416853 671 dbSNP
rs1358162713 676 dbSNP
rs1176394820 683 dbSNP
rs1350592768 684 dbSNP
rs1387848648 686 dbSNP
rs1187407655 690 dbSNP
rs1449934740 690 dbSNP
rs1263807133 691 dbSNP
rs1052842341 693 dbSNP
rs1482834232 693 dbSNP
rs1292143783 698 dbSNP
rs774461060 702 dbSNP
rs1213110360 704 dbSNP
rs1251444123 715 dbSNP
rs914227218 716 dbSNP
rs1229239019 728 dbSNP
rs969912563 730 dbSNP
rs151092428 734 dbSNP
rs371863557 737 dbSNP
rs1380398016 741 dbSNP
rs28485602 743 dbSNP
rs1303057346 749 dbSNP
rs1416184830 750 dbSNP
rs1034189066 754 dbSNP
rs1167375646 760 dbSNP
rs951827507 765 dbSNP
rs1469596228 766 dbSNP
rs1162647474 768 dbSNP
rs1156698334 772 dbSNP
rs1423026226 781 dbSNP
rs984719245 781 dbSNP
rs907771664 786 dbSNP
rs141073506 787 dbSNP
rs1251401119 794 dbSNP
rs1205895328 795 dbSNP
rs1264170226 798 dbSNP
rs976182192 799 dbSNP
rs1391851122 803 dbSNP
rs188783516 804 dbSNP
rs1408423400 808 dbSNP
rs1330002845 809 dbSNP
rs931726573 810 dbSNP
rs1409871955 820 dbSNP
rs1237307066 832 dbSNP
rs1057053260 835 dbSNP
rs771147914 838 dbSNP
rs1050147187 840 dbSNP
rs904042851 841 dbSNP
rs557063017 842 dbSNP
rs1471498307 844 dbSNP
rs1271290084 851 dbSNP
rs887849998 853 dbSNP
rs905059225 861 dbSNP
rs936816850 866 dbSNP
rs1052532613 872 dbSNP
rs776829822 874 dbSNP
rs575409937 880 dbSNP
rs1459262700 884 dbSNP
rs892746184 885 dbSNP
rs1013831748 888 dbSNP
rs1006205906 890 dbSNP
rs759671847 906 dbSNP
rs1265289351 909 dbSNP
rs1017539901 911 dbSNP
rs1025437823 915 dbSNP
rs964615441 919 dbSNP
rs1275627000 921 dbSNP
rs765535119 932 dbSNP
rs975940976 939 dbSNP
rs905154930 940 dbSNP
rs1287320710 942 dbSNP
rs1239395318 944 dbSNP
rs1002708289 946 dbSNP
rs1298471118 951 dbSNP
rs1027043641 958 dbSNP
rs577812458 959 dbSNP
rs1391303392 961 dbSNP
rs1327898389 967 dbSNP
rs192093350 979 dbSNP
rs775693357 980 dbSNP
rs1420023233 981 dbSNP
rs1376168583 983 dbSNP
rs1471244725 983 dbSNP
rs1198197196 986 dbSNP
rs1433898138 990 dbSNP
rs1255410517 1002 dbSNP
rs1207466852 1011 dbSNP
rs1475459453 1018 dbSNP
rs149857871 1019 dbSNP
rs1414963795 1020 dbSNP
rs1466879787 1022 dbSNP
rs914362635 1026 dbSNP
rs1207264318 1027 dbSNP
rs975986323 1037 dbSNP
rs72878165 1049 dbSNP
rs931636390 1057 dbSNP
rs1231857217 1063 dbSNP
rs985859100 1068 dbSNP
rs1356676562 1070 dbSNP
rs540099250 1072 dbSNP
rs1305527152 1081 dbSNP
rs1491967 1083 dbSNP
rs1291549575 1093 dbSNP
rs1364383208 1093 dbSNP
rs1320937708 1094 dbSNP
rs764541765 1104 dbSNP
rs1400312386 1106 dbSNP
rs563259089 1111 dbSNP
rs1251011595 1112 dbSNP
rs1397032136 1120 dbSNP
rs1186772055 1121 dbSNP
rs747319839 1125 dbSNP
rs1052583471 1135 dbSNP
rs185334671 1142 dbSNP
rs1441096711 1149 dbSNP
rs769174802 1154 dbSNP
rs1193867533 1157 dbSNP
rs1276025931 1157 dbSNP
rs1259271954 1163 dbSNP
rs1056678776 1165 dbSNP
rs1281768573 1169 dbSNP
rs1225591983 1170 dbSNP
rs1341313532 1174 dbSNP
rs1270752638 1179 dbSNP
rs551475789 1187 dbSNP
rs1432604671 1195 dbSNP
rs1338553024 1201 dbSNP
rs1333740036 1202 dbSNP
rs1485974208 1212 dbSNP
rs1415567623 1214 dbSNP
rs1187072784 1224 dbSNP
rs779502459 1224 dbSNP
rs949673971 1226 dbSNP
rs1046611667 1232 dbSNP
rs1429211128 1235 dbSNP
rs1391300863 1245 dbSNP
rs199962027 1252 dbSNP
rs372778811 1252 dbSNP
rs905206735 1254 dbSNP
rs570037178 1256 dbSNP
rs1237321944 1258 dbSNP
rs757823285 1260 dbSNP
rs1429817280 1262 dbSNP
rs1188693987 1269 dbSNP
rs1255172668 1270 dbSNP
rs538970319 1279 dbSNP
rs1259213198 1289 dbSNP
rs190262841 1291 dbSNP
rs1216318072 1294 dbSNP
rs1372203613 1300 dbSNP
rs1283316462 1303 dbSNP
rs1460102126 1305 dbSNP
rs888561770 1315 dbSNP
rs372287184 1316 dbSNP
rs900474211 1334 dbSNP
rs997393627 1337 dbSNP
rs146413376 1339 dbSNP
rs1404033651 1348 dbSNP
rs1311649921 1349 dbSNP
rs1413706322 1351 dbSNP
rs1166047097 1355 dbSNP
rs1342907308 1363 dbSNP
rs776995061 1366 dbSNP
rs567989107 1367 dbSNP
rs1030289571 1370 dbSNP
rs535015627 1372 dbSNP
rs1232895791 1395 dbSNP
rs1206014593 1396 dbSNP
rs1030224006 1399 dbSNP
rs953397235 1402 dbSNP
rs988692350 1406 dbSNP
rs367674087 1408 dbSNP
rs1289085775 1411 dbSNP
rs1214068920 1414 dbSNP
rs1235639564 1416 dbSNP
rs968475299 1417 dbSNP
rs1282222853 1423 dbSNP
rs1286672645 1424 dbSNP
rs1228072729 1425 dbSNP
rs1281286541 1426 dbSNP
rs1348380054 1426 dbSNP
rs979820409 1436 dbSNP
rs1278191026 1453 dbSNP
rs926954605 1460 dbSNP
rs1486798431 1461 dbSNP
rs1386981123 1467 dbSNP
rs1158910520 1470 dbSNP
rs1186605774 1473 dbSNP
rs985787394 1475 dbSNP
rs1408309505 1479 dbSNP
rs924939959 1483 dbSNP
rs749993190 1486 dbSNP
rs938367482 1488 dbSNP
rs1194257522 1489 dbSNP
rs117411313 1503 dbSNP
rs1207880270 1504 dbSNP
rs987813120 1504 dbSNP
rs1395290382 1519 dbSNP
rs914065933 1523 dbSNP
rs1217520497 1529 dbSNP
rs779780564 1531 dbSNP
rs748996833 1534 dbSNP
rs879662016 1535 dbSNP
rs1454651333 1536 dbSNP
rs1345391438 1538 dbSNP
rs1412253153 1543 dbSNP
rs1454698377 1543 dbSNP
rs1394012773 1548 dbSNP
rs1193727369 1552 dbSNP
rs1455480232 1557 dbSNP
rs1246147794 1565 dbSNP
rs571282617 1566 dbSNP
rs1486095986 1572 dbSNP
rs1288394610 1581 dbSNP
rs1244055635 1586 dbSNP
rs1208354917 1591 dbSNP
rs938249072 1592 dbSNP
rs1311845059 1599 dbSNP
rs1048460152 1600 dbSNP
rs1443163539 1603 dbSNP
rs888408578 1606 dbSNP
rs1004307780 1608 dbSNP
rs1037088397 1609 dbSNP
rs897670170 1620 dbSNP
rs1383093713 1625 dbSNP
rs1364602999 1628 dbSNP
rs1233365789 1634 dbSNP
rs997561843 1638 dbSNP
rs754827043 1643 dbSNP
rs1173670139 1644 dbSNP
rs997381605 1646 dbSNP
rs1300910573 1647 dbSNP
rs1436066502 1647 dbSNP
rs1169738452 1653 dbSNP
rs1428882882 1659 dbSNP
rs1030565354 1664 dbSNP
rs953353550 1677 dbSNP
rs1485446676 1681 dbSNP
rs1258517983 1686 dbSNP
rs1007426077 1691 dbSNP
rs1213085920 1706 dbSNP
rs1216362893 1708 dbSNP
rs891736171 1709 dbSNP
rs1251236566 1710 dbSNP
rs1228860400 1711 dbSNP
rs1031972546 1717 dbSNP
rs1310943664 1718 dbSNP
rs1214987466 1726 dbSNP
rs957670212 1727 dbSNP
rs562196230 1730 dbSNP
rs1416086895 1735 dbSNP
rs1467744542 1743 dbSNP
rs1192163808 1745 dbSNP
rs1368230915 1748 dbSNP
rs1462378167 1771 dbSNP
rs748085458 1771 dbSNP
rs1374758319 1773 dbSNP
rs76411305 1784 dbSNP
rs982332269 1785 dbSNP
rs1418806246 1791 dbSNP
rs529600658 1793 dbSNP
rs938284173 1795 dbSNP
rs1249829745 1803 dbSNP
rs372438482 1805 dbSNP
rs182400325 1811 dbSNP
rs1463140419 1812 dbSNP
rs1326647764 1822 dbSNP
rs984337137 1823 dbSNP
rs1264224720 1826 dbSNP
rs909896465 1833 dbSNP
rs1213432117 1837 dbSNP
rs1336007689 1838 dbSNP
rs939980166 1842 dbSNP
rs781099540 1850 dbSNP
rs1168249074 1853 dbSNP
rs551040788 1865 dbSNP
rs1375196264 1869 dbSNP
rs1224110569 1873 dbSNP
rs984072920 1874 dbSNP
rs901284626 1884 dbSNP
rs934059146 1893 dbSNP
rs554479808 1894 dbSNP
rs746006715 1895 dbSNP
rs572949407 1901 dbSNP
rs888906237 1913 dbSNP
rs140837767 1914 dbSNP
rs1007440730 1916 dbSNP
rs922050461 1926 dbSNP
rs1363471165 1932 dbSNP
rs1182553149 1944 dbSNP
rs1421007031 1955 dbSNP
rs1467774966 1959 dbSNP
rs1211378712 1975 dbSNP
rs1265881467 1983 dbSNP
rs1193623450 1984 dbSNP
rs144655338 1987 dbSNP
rs1469315996 1988 dbSNP
rs1032194791 1989 dbSNP
rs577651139 1995 dbSNP
rs1234233352 2001 dbSNP
rs1481185897 2006 dbSNP
rs1207263613 2007 dbSNP
rs1176982418 2008 dbSNP
rs893493408 2013 dbSNP
rs1249105890 2022 dbSNP
rs1009212099 2026 dbSNP
rs769856425 2027 dbSNP
rs1239103597 2028 dbSNP
rs1337082167 2030 dbSNP
rs552406937 2036 dbSNP
rs1440000148 2037 dbSNP
rs1371640839 2039 dbSNP
rs1021026845 2042 dbSNP
rs1476439863 2042 dbSNP
rs933383949 2043 dbSNP
rs1417205340 2044 dbSNP
rs970539306 2049 dbSNP
rs1301482825 2051 dbSNP
rs982267564 2053 dbSNP
rs1033860237 2056 dbSNP
rs1172872871 2057 dbSNP
rs138627002 2058 dbSNP
rs1442744696 2061 dbSNP
rs1375943376 2069 dbSNP
rs1173095261 2078 dbSNP
rs1455054865 2093 dbSNP
rs1297382708 2096 dbSNP
rs1348575303 2099 dbSNP
rs1416475821 2101 dbSNP
rs891763276 2108 dbSNP
rs775807591 2112 dbSNP
rs984390879 2113 dbSNP
rs1226085571 2114 dbSNP
rs1042956055 2143 dbSNP
rs1056291 2150 dbSNP
rs1348440174 2152 dbSNP
rs530898816 2154 dbSNP
rs1428347338 2165 dbSNP
rs1325701812 2166 dbSNP
rs369698853 2167 dbSNP
rs940240315 2170 dbSNP
rs1307701441 2173 dbSNP
rs972790383 2185 dbSNP
rs922590717 2188 dbSNP
rs1400374994 2193 dbSNP
rs934092464 2196 dbSNP
rs1435474454 2206 dbSNP
rs1249909167 2207 dbSNP
rs1167337510 2215 dbSNP
rs1486957845 2217 dbSNP
rs1050239739 2221 dbSNP
rs888962966 2225 dbSNP
rs1373935323 2226 dbSNP
rs1195781397 2232 dbSNP
rs1448326975 2233 dbSNP
rs185785254 2235 dbSNP
rs763232789 2236 dbSNP
rs1209499871 2238 dbSNP
rs1485734717 2239 dbSNP
rs1282375658 2244 dbSNP
rs1257407837 2246 dbSNP
rs148852255 2247 dbSNP
rs1188359000 2248 dbSNP
rs893753493 2261 dbSNP
rs1409550234 2262 dbSNP
rs746683881 2270 dbSNP
rs1014390753 2275 dbSNP
rs1009891194 2281 dbSNP
rs1020659041 2284 dbSNP
rs528665421 2287 dbSNP
rs1326946685 2288 dbSNP
rs1436327183 2290 dbSNP
rs1003307160 2293 dbSNP
rs1397869740 2297 dbSNP
rs951077349 2311 dbSNP
rs1472042661 2313 dbSNP
rs547329669 2313 dbSNP
rs1313447902 2314 dbSNP
rs983751678 2317 dbSNP
rs1475339156 2320 dbSNP
rs1258925420 2328 dbSNP
rs1033821721 2335 dbSNP
rs1271369713 2336 dbSNP
rs959092695 2343 dbSNP
rs1362231924 2354 dbSNP
rs1197304913 2359 dbSNP
rs1332498631 2363 dbSNP
rs188149134 2369 dbSNP
rs770134773 2370 dbSNP
rs1017104168 2380 dbSNP
rs1272964735 2384 dbSNP
rs1350565530 2391 dbSNP
rs961659324 2397 dbSNP
rs973355251 2399 dbSNP
rs1277806992 2404 dbSNP
rs1441588877 2411 dbSNP
rs1336846810 2413 dbSNP
rs547665559 2418 dbSNP
rs955529586 2421 dbSNP
rs985582163 2422 dbSNP
rs538663701 2425 dbSNP
rs1460199230 2428 dbSNP
rs922080102 2433 dbSNP
rs911332634 2449 dbSNP
rs2242352 2455 dbSNP
rs913235056 2456 dbSNP
rs533228840 2461 dbSNP
rs1469220873 2463 dbSNP
rs1475229020 2464 dbSNP
rs1183978974 2468 dbSNP
rs1467096877 2468 dbSNP
rs1043065107 2469 dbSNP
rs1214127158 2470 dbSNP
rs915074894 2474 dbSNP
rs1397080998 2475 dbSNP
rs1282476380 2497 dbSNP
rs1455472491 2511 dbSNP
rs759123307 2512 dbSNP
rs1374227988 2513 dbSNP
rs945316216 2519 dbSNP
rs1042668312 2530 dbSNP
rs1370951916 2531 dbSNP
rs1174013343 2532 dbSNP
rs1374784577 2534 dbSNP
rs1326939141 2537 dbSNP
rs906216004 2538 dbSNP
rs568797548 2548 dbSNP
rs1351231447 2549 dbSNP
rs1003644550 2553 dbSNP
rs1412617820 2557 dbSNP
rs1399604966 2559 dbSNP
rs1408006394 2563 dbSNP
rs1452453259 2568 dbSNP
rs1319751346 2570 dbSNP
rs1194001318 2578 dbSNP
rs1469682144 2580 dbSNP
rs1240571060 2585 dbSNP
rs1054782699 2595 dbSNP
rs1317756358 2603 dbSNP
rs894929478 2611 dbSNP
rs1347766349 2623 dbSNP
rs1317774954 2627 dbSNP
rs1236954645 2629 dbSNP
rs535970167 2632 dbSNP
rs1360390445 2640 dbSNP
rs1345216259 2647 dbSNP
rs1055647094 2650 dbSNP
rs35231824 2650 dbSNP
rs895603231 2654 dbSNP
rs1014004810 2658 dbSNP
rs1294999457 2675 dbSNP
rs1025851970 2685 dbSNP
rs1005300507 2686 dbSNP
rs1174256375 2687 dbSNP
rs886856740 2687 dbSNP
rs1303064347 2688 dbSNP
rs1185748931 2691 dbSNP
rs1486289005 2703 dbSNP
rs1343503881 2708 dbSNP
rs1208780891 2709 dbSNP
rs1485426227 2711 dbSNP
rs554624015 2714 dbSNP
rs1306278340 2721 dbSNP
rs1285544816 2722 dbSNP
rs1295249397 2724 dbSNP
rs1215541326 2725 dbSNP
rs963618399 2738 dbSNP
rs1446536547 2747 dbSNP
rs566303893 2751 dbSNP
rs994444020 2764 dbSNP
rs1030305355 2769 dbSNP
rs1374379654 2776 dbSNP
rs1206897328 2779 dbSNP
rs1312972587 2782 dbSNP
rs955634511 2786 dbSNP
rs985896466 2787 dbSNP
rs1255187758 2796 dbSNP
rs180953645 2797 dbSNP
rs1169459534 2799 dbSNP
rs911214508 2800 dbSNP
rs957491152 2803 dbSNP
rs1186156177 2816 dbSNP
rs987655238 2829 dbSNP
rs760265818 2831 dbSNP
rs1160278215 2832 dbSNP
rs1202283773 2834 dbSNP
rs1408585905 2835 dbSNP
rs1399682940 2837 dbSNP
rs765881599 2839 dbSNP
rs1251288593 2841 dbSNP
rs990155542 2843 dbSNP
rs1205622379 2844 dbSNP
rs753559449 2846 dbSNP
rs533723675 2847 dbSNP
rs913335843 2849 dbSNP
rs1354432157 2857 dbSNP
rs1396244367 2858 dbSNP
rs946134034 2859 dbSNP
rs778846432 2860 dbSNP
rs1297608455 2861 dbSNP
rs1325692909 2872 dbSNP
rs978774767 2873 dbSNP
rs1329666201 2878 dbSNP
rs1162537973 2885 dbSNP
rs1241579924 2892 dbSNP
rs925914664 2903 dbSNP
rs1350571469 2908 dbSNP
rs1417444456 2908 dbSNP
rs1250423378 2909 dbSNP
rs1178344699 2913 dbSNP
rs1055679057 2924 dbSNP
rs1042204086 2929 dbSNP
rs551492263 2934 dbSNP
rs1275054980 2936 dbSNP
rs1213491889 2944 dbSNP
rs1333678510 2955 dbSNP
rs1265705124 2958 dbSNP
rs927899929 2959 dbSNP
rs752578698 2961 dbSNP
rs1265509485 2962 dbSNP
rs143524243 2964 dbSNP
rs1379069846 2969 dbSNP
rs1323593578 2970 dbSNP
rs894771159 2978 dbSNP
rs1395449432 2979 dbSNP
rs1005237357 2980 dbSNP
rs1005313285 2988 dbSNP
rs1233446144 2993 dbSNP
rs1363239473 2997 dbSNP
rs1038095009 2998 dbSNP
rs1251734032 3013 dbSNP
rs897341645 3023 dbSNP
rs1469244210 3027 dbSNP
rs1016569075 3031 dbSNP
rs1211208144 3040 dbSNP
rs1484693245 3042 dbSNP
rs576724363 3044 dbSNP
rs1461665340 3053 dbSNP
rs1029698186 3060 dbSNP
rs954969702 3061 dbSNP
rs1301204974 3067 dbSNP
rs1233283107 3068 dbSNP
rs545040528 3072 dbSNP
rs1331523554 3073 dbSNP
rs1325292565 3077 dbSNP
rs1384563773 3087 dbSNP
rs1163805869 3099 dbSNP
rs1289471836 3102 dbSNP
rs1421639909 3104 dbSNP
rs1393804804 3110 dbSNP
rs62243889 3112 dbSNP
rs1388123480 3113 dbSNP
rs988069416 3114 dbSNP
rs758245286 3119 dbSNP
rs955848728 3121 dbSNP
rs777785938 3129 dbSNP
rs1408495044 3130 dbSNP
rs978805605 3133 dbSNP
rs925944340 3139 dbSNP
rs937361851 3143 dbSNP
rs1356231547 3147 dbSNP
rs1209997164 3161 dbSNP
rs991496892 3165 dbSNP
rs1007093831 3171 dbSNP
rs1326051535 3174 dbSNP
rs2131098 3177 dbSNP
rs1018234503 3181 dbSNP
rs1263969838 3187 dbSNP
rs1491506985 3187 dbSNP
rs1405015193 3188 dbSNP
rs1435845770 3188 dbSNP
rs372878928 3188 dbSNP
rs1166498496 3198 dbSNP
rs957334573 3199 dbSNP
rs372698227 3204 dbSNP
rs949981911 3204 dbSNP
rs990211193 3207 dbSNP
rs563541413 3211 dbSNP
rs569828197 3213 dbSNP
rs1273369405 3223 dbSNP
rs1254685615 3247 dbSNP
rs967475845 3254 dbSNP
rs1482707686 3257 dbSNP
rs769918915 3259 dbSNP
rs908344839 3261 dbSNP
rs927814171 3265 dbSNP
rs575546626 3268 dbSNP
rs1186203477 3274 dbSNP
rs868017396 3276 dbSNP
rs899589481 3279 dbSNP
rs185416141 3282 dbSNP
rs1292701546 3300 dbSNP
rs990699807 3313 dbSNP
rs1448915184 3315 dbSNP
rs1342755311 3317 dbSNP
rs916260752 3321 dbSNP
rs996503573 3322 dbSNP
rs940983961 3323 dbSNP
rs1366362630 3326 dbSNP
rs1401402144 3329 dbSNP
rs1173276438 3335 dbSNP
rs1038024661 3337 dbSNP
rs1168884377 3339 dbSNP
rs896928471 3342 dbSNP
rs34685648 3343 dbSNP
rs746313002 3343 dbSNP
rs929735721 3344 dbSNP
rs1461597592 3346 dbSNP
rs1396163894 3352 dbSNP
rs1051740811 3358 dbSNP
rs76796384 3360 dbSNP
rs80201533 3361 dbSNP
rs890721417 3374 dbSNP
rs148039442 3379 dbSNP
rs1009120201 3380 dbSNP
rs891256077 3381 dbSNP
rs1376589823 3388 dbSNP
rs1442027506 3399 dbSNP
rs62243890 3415 dbSNP
rs1310593895 3419 dbSNP
rs1333728609 3423 dbSNP
rs1439223807 3425 dbSNP
rs1391794413 3427 dbSNP
rs1018454163 3428 dbSNP
rs1163707363 3431 dbSNP
rs893370488 3432 dbSNP
rs1011560618 3445 dbSNP
rs1415254254 3448 dbSNP
rs528728502 3449 dbSNP
rs1469523698 3450 dbSNP
rs1380897979 3452 dbSNP
rs1180247120 3454 dbSNP
rs1467026305 3463 dbSNP
rs1252592701 3466 dbSNP
rs1222505923 3469 dbSNP
rs1228379712 3474 dbSNP
rs1270578430 3475 dbSNP
rs547191684 3483 dbSNP
rs1223312942 3491 dbSNP
rs1341262375 3499 dbSNP
rs1312147645 3510 dbSNP
rs1202750422 3512 dbSNP
rs769095935 3513 dbSNP
rs1020276192 3515 dbSNP
rs1294495532 3520 dbSNP
rs1436702686 3527 dbSNP
rs73087853 3537 dbSNP
rs1315590371 3538 dbSNP
rs981507593 3542 dbSNP
rs533590753 3545 dbSNP
rs141767822 3569 dbSNP
rs1452513544 3583 dbSNP
rs1424120283 3605 dbSNP
rs1253409955 3609 dbSNP
rs960540433 3613 dbSNP
rs990752299 3621 dbSNP
rs768909730 3628 dbSNP
rs1488696847 3629 dbSNP
rs941247603 3636 dbSNP
rs1347826909 3641 dbSNP
rs1193513896 3651 dbSNP
rs1389134635 3652 dbSNP
rs973770816 3666 dbSNP
rs1369243298 3668 dbSNP
rs1268114536 3675 dbSNP
rs1398829964 3681 dbSNP
rs1448120498 3693 dbSNP
rs147227789 3699 dbSNP
rs567442031 3710 dbSNP
rs879239325 3719 dbSNP
rs1299507655 3725 dbSNP
rs568784077 3735 dbSNP
rs1358531637 3744 dbSNP
rs1050833737 3746 dbSNP
rs1417634633 3755 dbSNP
rs375100589 3762 dbSNP
rs774678333 3765 dbSNP
rs982686829 3772 dbSNP
rs113961795 3777 dbSNP
rs1382830828 3778 dbSNP
rs1483194988 3780 dbSNP
rs1257135402 3782 dbSNP
rs941237424 3783 dbSNP
rs942894054 3812 dbSNP
rs1317958617 3819 dbSNP
rs1272763711 3820 dbSNP
rs552872382 3828 dbSNP
rs1340781071 3841 dbSNP
rs1225913734 3842 dbSNP
rs868513618 3845 dbSNP
rs921036005 3848 dbSNP
rs1378309976 3849 dbSNP
rs529661542 3850 dbSNP
rs1449938804 3860 dbSNP
rs932378297 3862 dbSNP
rs1305269291 3863 dbSNP
rs1011781325 3867 dbSNP
rs1051214797 3869 dbSNP
rs1423383841 3871 dbSNP
rs1257459908 3876 dbSNP
rs548014719 3878 dbSNP
rs1020704557 3889 dbSNP
rs890763195 3889 dbSNP
rs1199690250 3890 dbSNP
rs1318142167 3900 dbSNP
rs1259637628 3904 dbSNP
rs773773351 3910 dbSNP
rs1003381587 3911 dbSNP
rs1229922549 3913 dbSNP
rs1174141165 3915 dbSNP
rs1371120465 3917 dbSNP
rs1035753234 3918 dbSNP
rs139012487 3920 dbSNP
rs1402719741 3923 dbSNP
rs1324200844 3927 dbSNP
rs1470500721 3931 dbSNP
rs1457602695 3937 dbSNP
rs1205200550 3941 dbSNP
rs1247092196 3943 dbSNP
rs1167047721 3944 dbSNP
rs1033162260 3957 dbSNP
rs1463225245 3960 dbSNP
rs1012117633 3964 dbSNP
rs1179619411 3967 dbSNP
rs1195902085 3970 dbSNP
rs533785382 3974 dbSNP
rs1239604237 3986 dbSNP
rs558319996 3988 dbSNP
rs1487971831 4003 dbSNP
rs1265464581 4005 dbSNP
rs1246407468 4007 dbSNP
rs962661591 4007 dbSNP
rs1433140792 4008 dbSNP
rs1308527706 4016 dbSNP
rs1024737600 4021 dbSNP
rs143050189 4027 dbSNP
rs1366031295 4031 dbSNP
rs971384056 4035 dbSNP
rs746438489 4040 dbSNP
rs1391757296 4041 dbSNP
rs973978315 4050 dbSNP
rs1295342589 4059 dbSNP
rs767538996 4068 dbSNP
rs918256410 4069 dbSNP
rs1159846735 4070 dbSNP
rs1158442353 4073 dbSNP
rs147480883 4077 dbSNP
rs986974099 4080 dbSNP
rs1198626187 4084 dbSNP
rs1432212996 4089 dbSNP
rs878993381 4091 dbSNP
rs912342290 4093 dbSNP
rs942444809 4099 dbSNP
rs1039887825 4100 dbSNP
rs1211102176 4106 dbSNP
rs1368097656 4109 dbSNP
rs538853963 4114 dbSNP
rs914703591 4115 dbSNP
rs1217159551 4123 dbSNP
rs1355811824 4132 dbSNP
rs1253979173 4133 dbSNP
rs1232326782 4136 dbSNP
rs190177436 4139 dbSNP
rs1303764846 4141 dbSNP
rs1270297802 4144 dbSNP
rs1298888777 4144 dbSNP
rs1398217180 4144 dbSNP
rs74968885 4144 dbSNP
rs921065788 4144 dbSNP
rs74649864 4145 dbSNP
rs1377827589 4146 dbSNP
rs1388614 4147 dbSNP
rs1476635850 4148 dbSNP
rs1299188859 4154 dbSNP
rs1041941612 4158 dbSNP
rs397938383 4159 dbSNP
rs756840888 4159 dbSNP
rs1318643292 4160 dbSNP
rs1239156503 4161 dbSNP
rs960414576 4166 dbSNP
rs1326678100 4168 dbSNP
rs1257558216 4170 dbSNP
rs1216959177 4171 dbSNP
rs1215127633 4173 dbSNP
rs988878974 4176 dbSNP
rs1401967740 4177 dbSNP
rs1042061255 4179 dbSNP
rs1253217691 4184 dbSNP
rs1397133108 4188 dbSNP
rs1404713129 4189 dbSNP
rs1166544369 4195 dbSNP
rs903459248 4210 dbSNP
rs1422544290 4212 dbSNP
rs936215891 4213 dbSNP
rs1054644220 4216 dbSNP
rs894616043 4217 dbSNP
rs1013421206 4221 dbSNP
rs1158557270 4224 dbSNP
rs1257963725 4226 dbSNP
rs1024433611 4236 dbSNP
rs1463057251 4241 dbSNP
rs563331606 4243 dbSNP
rs1220527983 4252 dbSNP
rs1354263254 4254 dbSNP
rs183319474 4259 dbSNP
rs554792317 4263 dbSNP
rs1342801251 4265 dbSNP
rs1329703438 4268 dbSNP
rs1015524542 4271 dbSNP
rs1399092098 4274 dbSNP
rs962614209 4276 dbSNP
rs1375458673 4283 dbSNP
rs1410305406 4289 dbSNP
rs1410904950 4291 dbSNP
rs1002897618 4297 dbSNP
rs973927176 4298 dbSNP
rs1057438755 4301 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5793.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002841 | 3UTR | AUUUCACACAGUGAAACGCAAUUUUACCUAGUUUGCACUAUAUGAUCAGUGUUACUGCCUAUAAUCUUAUACAACAGCAAACCCUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002841 | 3UTR | UCUGUUCAUUUCACACAGUGAAACGCAAUUUUACCUAGUUUGCACUAUAUGAUCAGUGUUACUGCCUAUAAUCUUAUACAACAGCAAACCCUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002841 | 3UTR | UACUGAGCAUUUGCACCUCUGUUCAUUUCACACAGUGAAACGCAAUUUUACCUAGUUUGCACUAUAUGAUCAGUGUUACUGCCUAUAAUCUUAUACAACAGCAAACCCUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002841 | 3UTR | CUCUGUUCAUUUCACACAGUGAAACGCAAUUUUACCUAGUUUGCACUAUAUGAUCAGUGUUACUGCCUAUAAUCUUAUACAACAGCAAACCCUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002841 | 3UTR | GUAUCCUACUGAGCAUUUGCACCUCUGUUCAUUUCACACAGUGAAACGCAAUUUUACCUAGUUUGCACUAUAUGAUCAGUGUUACUGCCUAUAAUCUUAUACAACAGCAAACCCUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000474889.1 | 3UTR | CAAUUUUACCUAGUUUGCACUAUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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