Gene Symbol |
PIP5K1C
|
Synonyms |
LCCS3, PIP5K-GAMMA, PIP5K1-gamma, PIP5Kgamma |
Description |
phosphatidylinositol-4-phosphate 5-kinase type 1 gamma |
Transcript |
NM_012398
|
Expression |
|
Putative miRNA Targets on PIP5K1C |
|
3'UTR of PIP5K1C (miRNA target sites are highlighted) |
>PIP5K1C|NM_012398|3'UTR
1 TTTCTATGCAGCCCCCGACCCAGAGCCGAGCTCCACTTCTGCTCCGGCTGCCCCCGAAGGCGCTGCCCACCCCGCTGAGG
81 CCCAGAGCTCGGGAGATGCCCGCCTCGCCGCCCCACCGGACCTCGTCCTCCCCCTGCACGGATGCCGACGGCCGGGCCCC
161 TCCCCGACAAGCCTCCCAGGGCCCCGGCACCCCGGTCGGCAGCCTGCCCCTGTGAGACCCACCCTCCCGAGCGGCCAATC
241 GCATTTGAGTCCTTATTTGGCACAGAGACGGAAGCACGTGTGTGCCGTTTTAGGAAAAGAACAAAAAAGACACAAACAAA
321 CCAACCAGAGGGAGAAGAGCCCCTGCCCACTGCACTCTTTGGTTCTCTGCTGTGCCTGCCTGTGTCCTGAGGAAGAAGCC
401 AGGCTGTTCGCGGTGGCCTCTGGGGACCTGAGCCCCGGGGGCCCCATCGGCCTGCAGAGGGGACGGCTGGGGTCCCGAGC
481 AACTCTGCCTCCATCCACGTGGGAAGCGGACCCTCCTGCCCTCAGCTTGGGTTTGGGGGCCTCAGTGCAGGACATCTGGC
561 CTGAACATCGACTGTGGGGACAGCCCTCGCCCTGCCAAGCACTGCGGCCACTCAGCAGCTATGTTCCCGCCGCAGTGGGG
641 CCCTGACGCCCACCTCCCAGGTGCCCCTCGAGCAAAAACCTCTGGCGCCTCCAATCCAGACCCACCACAGCTGGAGGGCC
721 AGGCCTCCTCTTCCCCAGGCTGCCACCCACGCTGGCGGAGCTCAGGGCTGGGGACTTGTCCTTCTCTTCCAACGTAGGCC
801 ACTCAGCAACTGGCATGGAGGGCCCAGGCAACGGAGACGTTTTCTCCATGGCAGGACAGAGCGGGAGGCCGGGCCTTGGG
881 CCACAGGAGACCAGCTCAGGGCGGAAGGTCAGGCTCCCCGCCCCCTCCACGTGGAGACATGGCCTAGGGGGCCAGGCCCG
961 GCTCCACAGGAGTCTCCTTCAGGACTGGTGTGGATGTCCGCCGCCTCTTTCTTGTTTAAGTGATGTGATGTCTCCGAGGA
1041 GGGGAGAGAAGACTTTGTTTCCGACTCATCACCCTCCAAGAGGGCAGCGCTCCCAGTGGTGGGACTCAGCCCAGACTGCC
1121 CTGGGGCAGCTTCCTGGGCCCGCTGCGCTCAGAGGGTGCTGGTTGGAGGCCAGAGCTCGGCAGAGTCACCCACCCTGCCC
1201 TTCCCCAGGACCCCTGAGAGGGGCTTATTGGTGATGGCTGTGGGAATCCCCCACTTCCAAGATGTGCCCAGGATGTGAGG
1281 AGCTGGAGTGGAAGCTGCACCTTTGGGAAGAATTCCTCTCCAGACCTGGCAGAGCCTGGTGTGGGGTCTGAGACGGCCGG
1361 AGAACCTCCCAGGCAGGGCTCTGTGTTTTGTCTGTTACAACCTCCGTATGACGCCACGCCACCCGCTGTTCACGTCCCGT
1441 CGGCCTCCTGCACAGCCCACACGCTGCGCCCGGAAGGCCCCTGCTGTGGAGAAGCCGGACCCATCCCCGAGGTCCCCAGC
1521 GAGGACACACACTCCACGAGAGCAGCCCCTCCACTCTGCCCAGGAGAGGGGCCGACCCTCCTCGGGAACCGGCCAGCCGC
1601 GTGGCTCCCAGCATCCATCAGGACAAGCCCACGTGGGGTCCTCCCTGCGTGCTCAGAGGGTCTGTCCAGCCCTGGGAAGC
1681 GACCTTGGCCTCAGTTCACAGCCTGGTGCTCATCTGCTGGCACCGGGCATCCACCCATCAGCCCCCGCCCTGTCCCTCCG
1761 AAGGACACCCAGCAGGCACCCCCCGGGGAGGCAGGGGCAGAGGTCAGAAGGGGTGTCTGGGACCTGGATGGCCAGCAGGG
1841 ACAGGGGCATTGTCATCTCAAAGGCCCAACCCCCAGAGGCCACACCAGTCCTCCCAGGGAGTCCTCGAGTCGCCCTGCCC
1921 AGAGCCCTGGCACCAGAGACGCCAAGAGCCTGTGGGGTGACTCGGAGCAGCAGGTGTGGCCCCGGGCGGGCGGCACCGCG
2001 TCCAGGGCAGCCTCCCTCCGCTGAGTGACACGGGACACCAGTGCCCGGCCGACGCGCCTTTGCAGGAGAAATGTGCAAAC
2081 CTCTGTGGATACCATTTCATTTCCATTCTTGTGTTGTCTCCAAGGCCCTTTTGGAGATATACTTGGTGTTGGTTGTGTTT
2161 TTTGGTTCCTTTTCAGAGAACTGTAAACCGAGGCTGACGTGCTCCACTGACTGTGCCGAGGGGCGGGGGCAGGAGGACGG
2241 CAAGACCTATTTATAATATTTAGCGAACTCGGTCTCCCTCAGATCCCCCGCGAGGGAGGCTGCTGGACCCACCCCGCTGT
2321 CCCCCATGATAGAAGTCTGTAAATACCTTGGTGACCAATGCCCACTTCCCCTCCTGGGTCACCTCTGATGGCTGCTGTCC
2401 ACTGAGAACGTGGGCAGTGTCCAAATTCCTGTACTGTAAAGACTAAAAGGCGTTTGCTCTGAGACTGACAAGGCGGAAAC
2481 TTCCATGTGTCTCCTGCCAGGCTCTGTCCCCCTACGCCATCCCGACACGTCCCCGTTCCCCCGAAACCTGGCTCAGTGCA
2561 ATACTCCCATTGCCATGGGGTCCTTCACCATGGTACTGTCTCCACAGCCCTCAGTCCCCACCCCAGGAGAGGCGCCTGCC
2641 ACCTCCTCCTCATCTCCGGTGGTTCAATCGCTCCGCCTGTCCCCAACCCAGTCCCATTTTTATGGCCAAACTGATTCTGA
2721 AACAAAATGAAACTGCAAACCTCGTGTGTCTTAACTCCCCCCAGGGATGCCACTCCATTCCTCCGCCCCGTGGTCTGGTG
2801 CGTGACAATCCAAAGCGCCGAGACGAGGGTGCTGTGTCCCTCAAACCCAGAGTGGTGGGCGCCTCTGAAACCATACAGCC
2881 ACTCCTGGCCCCAAACACTGGTTTGCATCCCAGGTTCCTCGCCCACCTACCCCCGCCACACCCCGTCTTTTTAGAGATCT
2961 CTCTAATAAATCGGGTAATAAGCATC
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' gaccucucucucuCCGAGUCa 5'
|||||||
Target 5' tcccccgaaacctGGCTCAGt 3'
|
2537 - 2557
|
140.00 |
-11.90 |
2
|
miRNA 3' gaccucuCUCUCUCCGAGUca 5'
|||||:||||:|
Target 5' gacccctGAGAGGGGCTTAtt 3'
|
1209 - 1229
|
130.00 |
-16.80 |
3
|
miRNA 3' gaccUCUCUCUCUCCGAGUCa 5'
|| |||| ||||||
Target 5' ccacAG-GAGACCAGCTCAGg 3'
|
881 - 900
|
124.00 |
-12.80 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|