pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NFYB   
Synonyms CBF-A, CBF-B, HAP3, NF-YB
Description nuclear transcription factor Y subunit beta
Transcript NM_006166   
Expression
Putative miRNA Targets on NFYB
3'UTR of NFYB
(miRNA target sites are highlighted)
>NFYB|NM_006166|3'UTR
   1 TCTGAAGAAATGATGGAATGGGGAGTGTAGAGAAATGAGAGTCTGTATGATTCTGGAACAGAGACATCAGAAGGAAAGAC
  81 TGGTGAAAAGATGTATCTTTGTATATTAATAGCTGTAATGTAGCTTCCTGATGCTTGACTAATTGAGGTGTTAATTCTGA
 161 CTTGAGAATCTTTTTCATGAATGATTTTAAAGAAAAATTTGGATTTTAAAGGTATTAAAATATTTTTGTTTTGTACGAGA
 241 GTTTGTTGCTCTGTATGACTCCTGTATGCATTGTATATTGCAATTTATTACTGTCAGAGATTTGTAGACAGTTTCTTATT
 321 TTCATATTGAATCATGTTACTTTTGTAATTCAAGTAAGCGGCTGGGTTAATTCATGATGTTTGCCCTTTTAATAAAATAT
 401 AAGGGTAGAGTTCATTTTGAATGCAAGTTGCCTTTATTATAAATTTGAGTTTGTCTTGGTTATACCTTGCATGATAACCT
 481 AGCTAGATTTCTAGCATTTGCTGTATTTATTAAAATTATTATTTTTTTGGTAAAACATTAATAGTTTAAGCAGCATCATT
 561 TTTTTAAAAAATGTAATTGAATAAGTGTGAATGCAGAAGCAAATATTGTCTGCCCTGTTAAACTTGGTGCCCATTAACAG
 641 TGTTTACACTGTTCATCGTGCCTGTTAATGTAGTTTTAGTTACTGGAGCTTTTTTAAGACTAGATTTGGTTTTGAGTTAC
 721 ATTTTTAAGAATGTGGGAATATATTTAAGTTTAATGTAGTCCTAGTGCTCTTGAAATGGTGCCCCTTTCATTTGGTACAT
 801 GATTTTTTTTCAAATCATATCTTCAAGTACTATAGTATTCTCTTACAGAAGAGGAGTTTTATAGTCTGATGGTAAATGTC
 881 TTCATTTTACCTTTTTAATTGAAATGTCAAGTTTCCTGTTACACTATGGAAACCAAGAAACATCAGACATCATTGCGTGT
 961 ACAGACCTTTTGCATGGGTGAGTGGATGAAATGGAGAACAGAGTGAGTGCTGTGAACGGTGTGAAATAGAAGCCAACTTC
1041 TAGTATGCTGTCTTCATCTCTGCAATAAACTAAACGTAAATAATGTAACTTTGTATAATTTAGTAGTATGTACTTGGATT
1121 GTTTCTTTTTGAAAAGTGAGGATTTGTATTTTCTCATCTATTCTTTTTGGTGTTAATTAACTTGAGGGATTTCTTTTTTA
1201 AGTTTTTAATATCAAAAATTGCTATTGTATAGTTTGCCTAAAAGGAAGTTGGAGTGAATATCATCTTTGAAGGACACTCA
1281 AATTTATAAGGTAGAAGCAATTTCCCAGATATAGGCTGAACAGAAACATTTACTTTGCCAGAAGGAGCCTTTAGGAGTAT
1361 ATGTGGGCTAATCAGAGGTTAATAATGTCCTCATCTCCTACTCTCCATTTAAAAAACAAACTTCATTGTAGTAAATTCAA
1441 ATAGGAAAAAATGGGGGAGTAGTTAAGCAAAATCAACAGTCATCCTACTATGTTGAAAGAACCAATGTTAATATTTTGAT
1521 AAATATCATTTGTCCTTTTACTTTGCTAAATATGTATATTTTTATAAAAATGGGCTCATATTGTGCATACCATTTTGTAA
1601 CCTGCTTTTTTCACTTAACAATATATTGGGAACATCTTTTCCAGGTCATGCATAGTCTTCTGCATCATTTTTATTGGTTT
1681 ATTATTCTGCTGTATGACTCAATCATAATTCATTTAATCTTCTATTGGATATTTTGACTATTTACATCTTTTCACAGTTA
1761 TAAACAGCACTTCACTGAATCCCATGTACATCCATGACTGTTTTCTTAAATTCTTTGAATTGCTGGGTTACCAAATATGC
1841 AAAATTTTAAGGCTTTTGATACTTCGTTATGAGTGTATTTTTGAGATATTTTCCACTTGATCCAAGCAGTGTGTCACTAT
1921 ATAACTGATAAAAGCACTTGGTCTTTGATTATCAGATACTGTCTCTAAAATTATTTTAAAGATTAATATTTGTTCAAGTA
2001 GAGAATGAAGATAAAAAAGGAATTTGAGGCCAGGTATGGGGTGTCTCATGCCTATAATTCCAGCACTTTGGGAGGCCAAG
2081 GCAGGCAGATCACTTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGAGAACCCCCCGTCTCTACAAAAAATACA
2161 AAATTAGCAGGGTGTGGTGGTGCACACCTGTAGTCCCTTACTCCCTGGTGGCTGAGGCATTATCCCTTGAACCTGGGAGG
2241 CAGAGCCTAAAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACACAGCAAGACTCTTGTCTCAAACAAACAG
2321 GAATTTGAGTAAATTTTAAATTAGTATATACTACAACAAATTTCCAAACTTCATAATTTGCTAGTAGTGCTAACTAAAAT
2401 TTTACACCAGGTAAAATCAGGTCACCTTTTTTATGTATTGACTTCATTGTTGGACTTCATACTCTGATGGGAAAGAAAAT
2481 GGACATTCTGAATGTGTCAGGTGCATAATATCCTAATTTATGCTTGTCAGAGCTGGGGTCTCTGTCTTCCTTGGCCCATG
2561 TTGCATTTAACTGAATGTCATGTTTTCTCCTCTGGAACTTCTTATGTATGCAAGCTCCCATGTTAACCTATCATAAAAAT
2641 GTTTTTTATAATTTTGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggcCAGGCAUGUUUGAGACGUc 5'
             |||  | | | ||||||| 
Target 5' gctGTC--TTC-ATCTCTGCAa 3'
1047 - 1065 146.00 -13.00
2
miRNA  3' ggCCAG-GCAUGUU-UGAGACGUc 5'
            |||| :| |:|:  :|||||| 
Target 5' caGGTCATGCATAGTCTTCTGCAt 3'
1642 - 1665 140.00 -15.00
3
miRNA  3' ggCCAGGCAUGUU---------UGAGACGUc 5'
            | |::||||:|         :|||||:| 
Target 5' ttGTTTTGTACGAGAGTTTGTTGCTCTGTAt 3'
226 - 256 136.00 -14.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30531117 22 COSMIC
COSN19691523 36 COSMIC
COSN30494473 37 COSMIC
COSN30153903 39 COSMIC
COSN31613900 45 COSMIC
COSN30160161 56 COSMIC
COSN31565925 90 COSMIC
COSN31487524 130 COSMIC
COSN31580295 166 COSMIC
COSN31525291 196 COSMIC
COSN30168328 202 COSMIC
COSN30526627 214 COSMIC
COSN31587708 236 COSMIC
COSN29149486 512 COSMIC
COSN17132019 529 COSMIC
COSN1555329 806 COSMIC
COSN1555328 862 COSMIC
COSN20092636 1017 COSMIC
COSN28758647 1184 COSMIC
COSN21170280 1398 COSMIC
COSN15660875 2501 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765786379 11 dbSNP
rs1274949502 12 dbSNP
rs1283840358 12 dbSNP
rs1214484159 23 dbSNP
rs1316432063 25 dbSNP
rs1279521479 30 dbSNP
rs780486278 36 dbSNP
rs1362499937 42 dbSNP
rs1383017308 43 dbSNP
rs1365823810 45 dbSNP
rs1282467851 77 dbSNP
rs760245268 78 dbSNP
rs1024373161 85 dbSNP
rs1001215332 93 dbSNP
rs905432594 97 dbSNP
rs1235958268 101 dbSNP
rs561832561 106 dbSNP
rs1046705737 116 dbSNP
rs1351568413 117 dbSNP
rs149944005 120 dbSNP
rs949571330 129 dbSNP
rs887240368 132 dbSNP
rs576184297 134 dbSNP
rs1205360504 135 dbSNP
rs1013538953 143 dbSNP
rs113762520 149 dbSNP
rs1449502979 150 dbSNP
rs1200798011 157 dbSNP
rs1357243616 166 dbSNP
rs1293705094 169 dbSNP
rs1253365017 174 dbSNP
rs1439046080 180 dbSNP
rs1399222604 186 dbSNP
rs555983315 192 dbSNP
rs1156718546 202 dbSNP
rs539335301 203 dbSNP
rs1017611741 211 dbSNP
rs1162721409 213 dbSNP
rs1319957301 217 dbSNP
rs1388708589 218 dbSNP
rs1327029054 220 dbSNP
rs1005767718 221 dbSNP
rs1400921621 222 dbSNP
rs1389410298 231 dbSNP
rs1162119248 237 dbSNP
rs1318043491 241 dbSNP
rs1239213271 242 dbSNP
rs111787202 278 dbSNP
rs772672678 282 dbSNP
rs59855675 303 dbSNP
rs1264327943 306 dbSNP
rs117027469 309 dbSNP
rs942725133 311 dbSNP
rs1046793211 327 dbSNP
rs1273610696 329 dbSNP
rs997833956 332 dbSNP
rs912474123 352 dbSNP
rs1176537667 354 dbSNP
rs1252647548 359 dbSNP
rs987158531 360 dbSNP
rs557700150 369 dbSNP
rs1189228423 370 dbSNP
rs1475329607 384 dbSNP
rs1240705690 394 dbSNP
rs537142430 398 dbSNP
rs1020499939 400 dbSNP
rs1400031829 403 dbSNP
rs1464455101 404 dbSNP
rs990018868 407 dbSNP
rs1447731473 408 dbSNP
rs527689530 419 dbSNP
rs942539119 424 dbSNP
rs569611677 426 dbSNP
rs957319858 431 dbSNP
rs1234768241 432 dbSNP
rs535030806 445 dbSNP
rs184335540 458 dbSNP
rs1054132952 466 dbSNP
rs1252818215 480 dbSNP
rs192685951 493 dbSNP
rs1480935155 500 dbSNP
rs1199756802 514 dbSNP
rs1254183467 524 dbSNP
rs1476189315 544 dbSNP
rs1188740845 550 dbSNP
rs1001182583 556 dbSNP
rs906901546 557 dbSNP
rs1423254626 560 dbSNP
rs935218321 565 dbSNP
rs535620866 566 dbSNP
rs1271660971 577 dbSNP
rs1014214511 579 dbSNP
rs923846218 581 dbSNP
rs1301547952 586 dbSNP
rs2466551 597 dbSNP
rs1416147785 600 dbSNP
rs774106415 606 dbSNP
rs971365829 608 dbSNP
rs1216366275 610 dbSNP
rs187621923 610 dbSNP
rs1442511755 611 dbSNP
rs1394568791 615 dbSNP
rs1166361532 617 dbSNP
rs533639800 623 dbSNP
rs1409836412 627 dbSNP
rs1254249334 636 dbSNP
rs1047643754 639 dbSNP
rs959128848 640 dbSNP
rs1262529176 641 dbSNP
rs1017078367 654 dbSNP
rs139137155 658 dbSNP
rs1475877472 661 dbSNP
rs749144906 664 dbSNP
rs1420689878 675 dbSNP
rs1432902593 675 dbSNP
rs867035748 678 dbSNP
rs898564881 681 dbSNP
rs1397478013 682 dbSNP
rs7309185 683 dbSNP
rs527286077 700 dbSNP
rs942698695 715 dbSNP
rs997886295 726 dbSNP
rs912531710 733 dbSNP
rs1253694299 735 dbSNP
rs1051106942 741 dbSNP
rs1305632287 776 dbSNP
rs561578129 781 dbSNP
rs1018446709 785 dbSNP
rs945932000 789 dbSNP
rs1006619660 790 dbSNP
rs377041342 799 dbSNP
rs1285431616 802 dbSNP
rs1351531250 810 dbSNP
rs574858847 811 dbSNP
rs1242985347 812 dbSNP
rs1488263844 813 dbSNP
rs1053578120 816 dbSNP
rs770861103 817 dbSNP
rs541902622 820 dbSNP
rs1371107773 828 dbSNP
rs879402688 832 dbSNP
rs1297040510 833 dbSNP
rs115086993 839 dbSNP
rs927027856 840 dbSNP
rs183945152 846 dbSNP
rs747417070 846 dbSNP
rs1323683353 856 dbSNP
rs193115633 861 dbSNP
rs950061776 884 dbSNP
rs1308362192 907 dbSNP
rs1281286558 909 dbSNP
rs576689770 910 dbSNP
rs1004565238 911 dbSNP
rs992000207 911 dbSNP
rs758989236 915 dbSNP
rs937471702 926 dbSNP
rs778067702 936 dbSNP
rs553659073 938 dbSNP
rs1469131131 946 dbSNP
rs1395776313 956 dbSNP
rs909939967 957 dbSNP
rs984327446 959 dbSNP
rs2723852 964 dbSNP
rs1025916983 974 dbSNP
rs568908264 975 dbSNP
rs1176656474 977 dbSNP
rs78519510 985 dbSNP
rs1025911525 996 dbSNP
rs1234567856 1001 dbSNP
rs1162276981 1004 dbSNP
rs976964970 1005 dbSNP
rs1461830565 1010 dbSNP
rs1205127323 1017 dbSNP
rs1485254413 1027 dbSNP
rs1039857748 1040 dbSNP
rs1006892664 1045 dbSNP
rs760304818 1046 dbSNP
rs1444241835 1049 dbSNP
rs1280230211 1053 dbSNP
rs1378449862 1063 dbSNP
rs150754603 1075 dbSNP
rs779390117 1076 dbSNP
rs1198468512 1077 dbSNP
rs1256526939 1080 dbSNP
rs893579011 1083 dbSNP
rs1236046120 1084 dbSNP
rs1232968413 1092 dbSNP
rs1348104050 1093 dbSNP
rs1032047573 1103 dbSNP
rs1419658877 1110 dbSNP
rs2468333 1115 dbSNP
rs999346634 1130 dbSNP
rs1169730757 1147 dbSNP
rs902321365 1158 dbSNP
rs1051508349 1163 dbSNP
rs1374838234 1188 dbSNP
rs1358495832 1200 dbSNP
rs755392766 1212 dbSNP
rs1314797050 1217 dbSNP
rs946098219 1219 dbSNP
rs1356392717 1222 dbSNP
rs1218197036 1224 dbSNP
rs895817193 1229 dbSNP
rs1410963812 1236 dbSNP
rs1215677537 1247 dbSNP
rs913123072 1248 dbSNP
rs1311374236 1258 dbSNP
rs754240187 1259 dbSNP
rs1258952028 1261 dbSNP
rs1054419500 1262 dbSNP
rs1229581067 1263 dbSNP
rs1192402507 1264 dbSNP
rs1371145649 1266 dbSNP
rs1476304566 1287 dbSNP
rs1168278561 1294 dbSNP
rs1424424731 1298 dbSNP
rs77150069 1302 dbSNP
rs1376340514 1306 dbSNP
rs1376103056 1310 dbSNP
rs1399633070 1311 dbSNP
rs375714901 1312 dbSNP
rs1328410176 1316 dbSNP
rs979949710 1317 dbSNP
rs879118034 1318 dbSNP
rs1417471922 1322 dbSNP
rs570186305 1346 dbSNP
rs1379965134 1361 dbSNP
rs187894909 1369 dbSNP
rs1410230825 1377 dbSNP
rs1313683882 1382 dbSNP
rs917033508 1389 dbSNP
rs1474800805 1392 dbSNP
rs918737587 1393 dbSNP
rs1212692004 1400 dbSNP
rs977017267 1402 dbSNP
rs1443009606 1409 dbSNP
rs1193695463 1411 dbSNP
rs1485863905 1417 dbSNP
rs1259826186 1418 dbSNP
rs1452537602 1421 dbSNP
rs983502392 1426 dbSNP
rs1395781438 1429 dbSNP
rs1419237110 1430 dbSNP
rs965688381 1431 dbSNP
rs1387461669 1442 dbSNP
rs950450822 1450 dbSNP
rs1318263194 1451 dbSNP
rs556761135 1452 dbSNP
rs1026306936 1453 dbSNP
rs911443444 1458 dbSNP
rs547699419 1459 dbSNP
rs763581367 1462 dbSNP
rs766912899 1472 dbSNP
rs1304885121 1473 dbSNP
rs1376807847 1475 dbSNP
rs1237754295 1482 dbSNP
rs1258410393 1491 dbSNP
rs756645213 1505 dbSNP
rs73177982 1508 dbSNP
rs1417049969 1525 dbSNP
rs571112750 1526 dbSNP
rs1195250794 1540 dbSNP
rs1288568581 1548 dbSNP
rs891198373 1549 dbSNP
rs1253617153 1556 dbSNP
rs1438970847 1564 dbSNP
rs1451815794 1570 dbSNP
rs1347054510 1572 dbSNP
rs1159941189 1575 dbSNP
rs548067539 1576 dbSNP
rs1392543317 1577 dbSNP
rs1051213485 1582 dbSNP
rs1463408546 1582 dbSNP
rs1010650264 1583 dbSNP
rs528017465 1585 dbSNP
rs568035562 1586 dbSNP
rs1400278071 1594 dbSNP
rs1390121979 1601 dbSNP
rs1304271579 1603 dbSNP
rs999191189 1612 dbSNP
rs770402053 1620 dbSNP
rs1239333612 1622 dbSNP
rs547908346 1624 dbSNP
rs966533925 1634 dbSNP
rs1332211088 1643 dbSNP
rs1024735129 1680 dbSNP
rs1013823739 1681 dbSNP
rs895102816 1692 dbSNP
rs1055445099 1695 dbSNP
rs935879844 1702 dbSNP
rs1187306614 1705 dbSNP
rs1416012266 1711 dbSNP
rs142097089 1712 dbSNP
rs761419831 1713 dbSNP
rs1044236473 1718 dbSNP
rs1184407464 1719 dbSNP
rs774018587 1724 dbSNP
rs1300357037 1727 dbSNP
rs1397818390 1728 dbSNP
rs888411647 1739 dbSNP
rs1260822359 1740 dbSNP
rs949885842 1741 dbSNP
rs1048530661 1745 dbSNP
rs916981978 1757 dbSNP
rs763832079 1761 dbSNP
rs1234688703 1764 dbSNP
rs983252163 1780 dbSNP
rs1212474304 1782 dbSNP
rs929053131 1789 dbSNP
rs1306650583 1792 dbSNP
rs1224955015 1794 dbSNP
rs1253078369 1797 dbSNP
rs34781342 1797 dbSNP
rs920237231 1798 dbSNP
rs918663990 1803 dbSNP
rs1255432628 1822 dbSNP
rs1271897805 1823 dbSNP
rs762823081 1838 dbSNP
rs1486794774 1847 dbSNP
rs562255551 1865 dbSNP
rs775226968 1866 dbSNP
rs1235678165 1867 dbSNP
rs962906927 1870 dbSNP
rs1018511679 1890 dbSNP
rs1427169622 1911 dbSNP
rs1295236032 1914 dbSNP
rs985576235 1917 dbSNP
rs1172981615 1921 dbSNP
rs1380768706 1927 dbSNP
rs955606713 1934 dbSNP
rs1434615262 1963 dbSNP
rs1172498566 1965 dbSNP
rs1030153259 1967 dbSNP
rs986080589 1976 dbSNP
rs867752809 1984 dbSNP
rs1010281289 1995 dbSNP
rs769768067 1998 dbSNP
rs1380357551 2001 dbSNP
rs957729846 2004 dbSNP
rs745853383 2006 dbSNP
rs1233424395 2016 dbSNP
rs140320102 2022 dbSNP
rs369297403 2023 dbSNP
rs776989664 2027 dbSNP
rs1000225745 2054 dbSNP
rs1392358156 2066 dbSNP
rs182811793 2073 dbSNP
rs1484997567 2084 dbSNP
rs1188705361 2085 dbSNP
rs1167097424 2091 dbSNP
rs1454243970 2102 dbSNP
rs1192229746 2112 dbSNP
rs559961701 2120 dbSNP
rs966461385 2121 dbSNP
rs1176121116 2138 dbSNP
rs1024678338 2140 dbSNP
rs574677552 2142 dbSNP
rs147129308 2143 dbSNP
rs542651109 2143 dbSNP
rs1248298191 2150 dbSNP
rs1192609196 2157 dbSNP
rs1466806421 2167 dbSNP
rs1373091793 2171 dbSNP
rs1044371414 2173 dbSNP
rs34496617 2178 dbSNP
rs772319267 2178 dbSNP
rs1283620655 2182 dbSNP
rs888464018 2184 dbSNP
rs190697188 2185 dbSNP
rs1489066087 2186 dbSNP
rs576565798 2189 dbSNP
rs994153312 2190 dbSNP
rs1048025774 2201 dbSNP
rs556699621 2209 dbSNP
rs1298685534 2226 dbSNP
rs1455069092 2227 dbSNP
rs920353825 2234 dbSNP
rs1191292091 2240 dbSNP
rs1041515813 2241 dbSNP
rs973031159 2242 dbSNP
rs1233840325 2255 dbSNP
rs944225768 2257 dbSNP
rs748341115 2258 dbSNP
rs943063221 2259 dbSNP
rs1396658880 2262 dbSNP
rs911472286 2264 dbSNP
rs539987506 2265 dbSNP
rs531840316 2266 dbSNP
rs185445006 2267 dbSNP
rs1308063466 2269 dbSNP
rs1334408636 2271 dbSNP
rs989398040 2273 dbSNP
rs868776214 2279 dbSNP
rs1469331691 2281 dbSNP
rs1204361560 2285 dbSNP
rs956135213 2286 dbSNP
rs1479405873 2293 dbSNP
rs1390560144 2294 dbSNP
rs992280928 2295 dbSNP
rs1412308267 2299 dbSNP
rs1474662705 2318 dbSNP
rs959256214 2320 dbSNP
rs1419706250 2327 dbSNP
rs1405884736 2332 dbSNP
rs1328028102 2333 dbSNP
rs1352673948 2334 dbSNP
rs1033903331 2340 dbSNP
rs546639110 2342 dbSNP
rs984630091 2348 dbSNP
rs1355089474 2354 dbSNP
rs564376761 2359 dbSNP
rs1000193172 2389 dbSNP
rs1295506991 2393 dbSNP
rs1335838010 2399 dbSNP
rs1214337296 2403 dbSNP
rs866010764 2408 dbSNP
rs1309747322 2409 dbSNP
rs1436692589 2413 dbSNP
rs1251846176 2432 dbSNP
rs749658479 2435 dbSNP
rs780338886 2437 dbSNP
rs756619053 2445 dbSNP
rs1185255509 2446 dbSNP
rs1194570417 2447 dbSNP
rs1259369209 2450 dbSNP
rs1055324220 2452 dbSNP
rs1473035558 2453 dbSNP
rs1481862531 2454 dbSNP
rs897123755 2468 dbSNP
rs1210452023 2470 dbSNP
rs1417358428 2480 dbSNP
rs1345931071 2485 dbSNP
rs546397847 2487 dbSNP
rs374467543 2494 dbSNP
rs895742064 2503 dbSNP
rs1374857126 2504 dbSNP
rs750965915 2508 dbSNP
rs766969360 2523 dbSNP
rs1315081157 2525 dbSNP
rs756786855 2530 dbSNP
rs554107926 2533 dbSNP
rs1430511316 2536 dbSNP
rs1268763226 2538 dbSNP
rs1342114725 2544 dbSNP
rs993769245 2544 dbSNP
rs751158771 2564 dbSNP
rs777862663 2579 dbSNP
rs1346441213 2581 dbSNP
rs1393000623 2593 dbSNP
rs898903037 2604 dbSNP
rs796170394 2617 dbSNP
rs1442621964 2621 dbSNP
rs936823352 2628 dbSNP
rs376391932 2631 dbSNP
rs1311996665 2640 dbSNP
rs763814363 2643 dbSNP
rs1394392184 2646 dbSNP
rs1433013754 2651 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4801.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggcCAGGCAUGUUUGAGACGUc 5'
             |||  | | | ||||||| 
Target 5' gcuGUC--UUC-AUCUCUGCAa 3'
8 - 26
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000240055.3 | 3UTR | CUAGUAUGCUGUCUUCAUCUCUGCAAUAAACUAAACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC -0.843 0.08 -0.400 0.3 4 Click to see details
HNSC 0.359 0.14 0.427 0.1 11 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
LIHC 0.116 0.38 0.300 0.22 9 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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