pre-miRNA Information | |
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pre-miRNA | hsa-mir-4457 |
Genomic Coordinates | chr5: 1309310 - 1309377 |
Description | Homo sapiens miR-4457 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | ||||||||||||||||||||||
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Mature miRNA | hsa-miR-4457 | |||||||||||||||||||||
Sequence | 43| UCACAAGGUAUUGACUGGCGUA |64 | |||||||||||||||||||||
Evidence | Experimental | |||||||||||||||||||||
Experiments | Illumina | |||||||||||||||||||||
SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | MOAP1 | ||||||||||||||||||||
Synonyms | MAP-1, PNMA4 | ||||||||||||||||||||
Description | modulator of apoptosis 1 | ||||||||||||||||||||
Transcript | NM_022151 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on MOAP1 | |||||||||||||||||||||
3'UTR of MOAP1 (miRNA target sites are highlighted) |
>MOAP1|NM_022151|3'UTR 1 GTCTCAGGGAACCACGAAGGGATATGGCAATGAGTAGAGCATGAAGGTAGAACAGTCTATATACTCTTGTGACACATACA 81 ATCCCTACCTTGTGCTGCCAAGTAACTCATTTTTGTGCAATTCTCAGTATAAGCCCTTTGTCGTTTCTGTGCCTATTTAA 161 AGTCTCCTAAAGGTGTAATTGACTAGGAAGGATGTAGTTCTACACTGCCATTTACCTATTTAAATTCATCCTTGTGAATA 241 TCTTTGTTGTTGTTGTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAT 321 CCTCCGCCTTCCAGGTTTAAGCTATTCTCCTGCCTCAGTTGCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCC 401 AGCTAAGTTTTGCATTATCAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAGTTTCGAACTCCTGACCTCAAGTGAT 481 CCACCTGCTTCGGCCTCTGAAAGTGCTGGGATTACAGGCGTGAGACACTGCGCCCAGCCTCATCCCTGTGAATTTCTTAT 561 TGTACACAAGTTCTTTCACTATCTGTGTGCAGTGCTCTGAGGGGACAGACAAGGCTTGGGTGTATATGCCAACCAGATCT 641 CATTGAAGTATCAGCTTGTTTGGTACTAGGTGCAAGTGTAGCATGTCACATGTGACCATGTTGGATCATTGACAATTTTT 721 AGGTATGTACTGACCTACATTTATGATGAAGATCCTGAGCGGAGGTTAAGATATTAAGTTATTTTCCATATGAATCAGAA 801 TTATATTGATTCTGTGCAATCAAAACAAAAGGCAGAATAGAATGCTGAGATTGGTTAAGTTTGCAATGACCATCTTGAAC 881 CACAGATTTCTGCTATGTGTCATCAAAACATCTAGTTCTGAGTAACATTTTCACGATTGTTATAAAATTATAGGTGTGAA 961 CTTCTAAAATAAAGGAATGCTAATAAAATGAAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | HEK293 | ||||||
Disease | 64112.0 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1
... - Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Kishore S; Jaskiewicz L; Burger L; Hausser et al. - Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
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CLIP-seq Support 1 for dataset GSM4903829 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Human neurons / CTLTD_shCTL_a |
Location of target site | NM_022151 | 3UTR | CAUCCUUGUGAAUAUCU |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161238 |
CLIP-seq Viewer | Link |
CLIP-seq Support 2 for dataset GSM4903833 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Dermal fibroblasts / CTL_TD_21_a |
Location of target site | NM_022151 | 3UTR | AGGUAGAACAGUCUAUAUACUCUUGUGACACAUACAAUCCCUACCUUGUGCUGCCAAGUAACUCAUUUUUGUGCAAUUCUCAGUAUAAGCCCUUUGUCGUUUCUGUGCCUAUUUAAAGUCUCCUAAAG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161239 |
CLIP-seq Viewer | Link |
CLIP-seq Support 3 for dataset GSM4903835 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Dermal fibroblasts / CTL_TD_21_c |
Location of target site | NM_022151 | 3UTR | ACUCUUGUGACACAUACAAUCCCUACCUUGUGCUGCCAAGUAACUCAUUUUUGUGCAAUUCUCAGUAUAAGCCCUUUGUCGUUUCUGUGCCUAUUUAAAGUCUCCUAAAG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161239 |
CLIP-seq Viewer | Link |
CLIP-seq Support 4 for dataset GSM4903837 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Dermal fibroblasts / 124_TD_21_b |
Location of target site | NM_022151 | 3UTR | CCCUACCUUGUGCUGCCAAGUAACUCAUUUUUGUGCAAUUCUCAGUAUAAGCCCUUUGUCGUUUCUGUGCCUAUUUAAAGUCUCCUAAAG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161239 |
CLIP-seq Viewer | Link |
CLIP-seq Support 5 for dataset GSM4903838 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Dermal fibroblasts / 124_TD_21_c |
Location of target site | NM_022151 | 3UTR | ACACAUACAAUCCCUACCUUGUGCUGCCAAGUAACUCAUUUUUGUGCAAUUCUCAGUAUAAGCCCUUUGUCGUUUCUGUGCCUAUUUAAAGUCUCCUAAAG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161239 |
CLIP-seq Viewer | Link |
CLIP-seq Support 6 for dataset GSM714644 | |
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Method / RBP | PAR-CLIP / AGO2 |
Cell line / Condition | HEK293 / completeT1, repA |
Location of target site | ENST00000298894.4 | 3UTR | UACACUGCCAUUUACCUAUUUAAAUUCAUCCUUG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 21572407 / GSE28865 |
CLIP-seq Viewer | Link |
MiRNA-Target Expression Profile | |||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||
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83 hsa-miR-4457 Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT098032 | SOBP | sine oculis binding protein homolog | ![]() |
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2 | 2 | ||||||
MIRT202580 | PCMTD2 | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 | ![]() |
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2 | 6 | ||||||
MIRT247137 | WEE1 | WEE1 G2 checkpoint kinase | ![]() |
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2 | 4 | ||||||
MIRT349266 | PTBP1 | polypyrimidine tract binding protein 1 | ![]() |
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2 | 2 | ||||||
MIRT363756 | EIF4EBP1 | eukaryotic translation initiation factor 4E binding protein 1 | ![]() |
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2 | 2 | ||||||
MIRT443586 | FAM84B | family with sequence similarity 84 member B | ![]() |
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2 | 2 | ||||||
MIRT452333 | EIF5AL1 | eukaryotic translation initiation factor 5A-like 1 | ![]() |
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2 | 2 | ||||||
MIRT453864 | ZBTB40 | zinc finger and BTB domain containing 40 | ![]() |
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2 | 4 | ||||||
MIRT471486 | PDE4D | phosphodiesterase 4D | ![]() |
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2 | 4 | ||||||
MIRT476290 | GMFB | glia maturation factor beta | ![]() |
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2 | 8 | ||||||
MIRT479897 | CCDC117 | coiled-coil domain containing 117 | ![]() |
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2 | 4 | ||||||
MIRT484251 | ANK1 | ankyrin 1 | ![]() |
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2 | 2 | ||||||
MIRT491473 | TMEM214 | transmembrane protein 214 | ![]() |
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2 | 2 | ||||||
MIRT493804 | GAN | gigaxonin | ![]() |
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2 | 6 | ||||||
MIRT499252 | VAV3 | vav guanine nucleotide exchange factor 3 | ![]() |
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2 | 4 | ||||||
MIRT502271 | HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | ![]() |
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2 | 4 | ||||||
MIRT504651 | RPL9 | ribosomal protein L9 | ![]() |
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2 | 6 | ||||||
MIRT505211 | UBN2 | ubinuclein 2 | ![]() |
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2 | 8 | ||||||
MIRT508952 | SNRPB | small nuclear ribonucleoprotein polypeptides B and B1 | ![]() |
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2 | 4 | ||||||
MIRT512691 | POP1 | POP1 homolog, ribonuclease P/MRP subunit | ![]() |
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2 | 2 | ||||||
MIRT513320 | SCUBE3 | signal peptide, CUB domain and EGF like domain containing 3 | ![]() |
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2 | 2 | ||||||
MIRT513870 | HOXA5 | homeobox A5 | ![]() |
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2 | 2 | ||||||
MIRT517342 | ZNF529 | zinc finger protein 529 | ![]() |
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2 | 4 | ||||||
MIRT518947 | LSG1 | large 60S subunit nuclear export GTPase 1 | ![]() |
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2 | 2 | ||||||
MIRT520867 | SUGT1 | SGT1 homolog, MIS12 kinetochore complex assembly cochaperone | ![]() |
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2 | 2 | ||||||
MIRT528325 | GIGYF2 | GRB10 interacting GYF protein 2 | ![]() |
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2 | 2 | ||||||
MIRT531990 | SLCO1B3 | solute carrier organic anion transporter family member 1B3 | ![]() |
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2 | 2 | ||||||
MIRT533298 | USP46 | ubiquitin specific peptidase 46 | ![]() |
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2 | 2 | ||||||
MIRT545257 | TRIM36 | tripartite motif containing 36 | ![]() |
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2 | 4 | ||||||
MIRT547038 | POGZ | pogo transposable element derived with ZNF domain | ![]() |
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2 | 2 | ||||||
MIRT556103 | MOAP1 | modulator of apoptosis 1 | ![]() |
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2 | 2 | ||||||
MIRT558321 | DR1 | down-regulator of transcription 1 | ![]() |
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2 | 2 | ||||||
MIRT558521 | CSRNP3 | cysteine and serine rich nuclear protein 3 | ![]() |
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2 | 2 | ||||||
MIRT560906 | TMED10 | transmembrane p24 trafficking protein 10 | ![]() |
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2 | 2 | ||||||
MIRT568448 | ARPP19 | cAMP regulated phosphoprotein 19 | ![]() |
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2 | 2 | ||||||
MIRT570586 | OTUD7B | OTU deubiquitinase 7B | ![]() |
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2 | 2 | ||||||
MIRT572799 | SIGLEC14 | sialic acid binding Ig like lectin 14 | ![]() |
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2 | 2 | ||||||
MIRT573863 | C9orf78 | chromosome 9 open reading frame 78 | ![]() |
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2 | 2 | ||||||
MIRT575058 | P2ry1 | purinergic receptor P2Y, G-protein coupled 1 | ![]() |
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2 | 5 | ||||||
MIRT609931 | SLC38A1 | solute carrier family 38 member 1 | ![]() |
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2 | 4 | ||||||
MIRT610836 | ZNF585A | zinc finger protein 585A | ![]() |
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2 | 4 | ||||||
MIRT611474 | P2RY1 | purinergic receptor P2Y1 | ![]() |
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2 | 7 | ||||||
MIRT613569 | YY2 | YY2 transcription factor | ![]() |
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2 | 2 | ||||||
MIRT618626 | GREB1 | growth regulation by estrogen in breast cancer 1 | ![]() |
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2 | 2 | ||||||
MIRT620606 | SAP30 | Sin3A associated protein 30 | ![]() |
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2 | 2 | ||||||
MIRT621017 | CLSTN3 | calsyntenin 3 | ![]() |
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2 | 4 | ||||||
MIRT635314 | FAM179A | TOG array regulator of axonemal microtubules 2 | ![]() |
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2 | 2 | ||||||
MIRT635919 | GLTSCR2 | NOP53 ribosome biogenesis factor | ![]() |
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2 | 2 | ||||||
MIRT640598 | TM9SF4 | transmembrane 9 superfamily member 4 | ![]() |
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2 | 2 | ||||||
MIRT641784 | YWHAB | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta | ![]() |
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2 | 4 | ||||||
MIRT644067 | IQCE | IQ motif containing E | ![]() |
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2 | 2 | ||||||
MIRT648288 | TRAPPC2L | trafficking protein particle complex 2 like | ![]() |
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2 | 2 | ||||||
MIRT658085 | FOXR2 | forkhead box R2 | ![]() |
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2 | 2 | ||||||
MIRT659077 | DEPTOR | DEP domain containing MTOR interacting protein | ![]() |
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2 | 2 | ||||||
MIRT665307 | ZBTB37 | zinc finger and BTB domain containing 37 | ![]() |
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2 | 2 | ||||||
MIRT665975 | SYTL4 | synaptotagmin like 4 | ![]() |
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2 | 2 | ||||||
MIRT666302 | SLC25A25 | solute carrier family 25 member 25 | ![]() |
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2 | 2 | ||||||
MIRT674906 | RASSF9 | Ras association domain family member 9 | ![]() |
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2 | 2 | ||||||
MIRT680086 | THAP1 | THAP domain containing 1 | ![]() |
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2 | 2 | ||||||
MIRT681488 | DIP2A | disco interacting protein 2 homolog A | ![]() |
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2 | 2 | ||||||
MIRT691244 | DFNB59 | pejvakin | ![]() |
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2 | 2 | ||||||
MIRT692362 | AGTRAP | angiotensin II receptor associated protein | ![]() |
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2 | 2 | ||||||
MIRT693035 | MB21D1 | Mab-21 domain containing 1 | ![]() |
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2 | 2 | ||||||
MIRT693837 | STAT5A | signal transducer and activator of transcription 5A | ![]() |
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2 | 2 | ||||||
MIRT694479 | LRTOMT | leucine rich transmembrane and O-methyltransferase domain containing | ![]() |
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2 | 2 | ||||||
MIRT696070 | ZNF264 | zinc finger protein 264 | ![]() |
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2 | 2 | ||||||
MIRT696578 | TTC21B | tetratricopeptide repeat domain 21B | ![]() |
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2 | 2 | ||||||
MIRT696760 | MTFMT | mitochondrial methionyl-tRNA formyltransferase | ![]() |
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2 | 2 | ||||||
MIRT697307 | ZNF652 | zinc finger protein 652 | ![]() |
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2 | 2 | ||||||
MIRT700152 | RNF115 | ring finger protein 115 | ![]() |
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2 | 2 | ||||||
MIRT701056 | PARP2 | poly(ADP-ribose) polymerase 2 | ![]() |
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2 | 2 | ||||||
MIRT701198 | OTUD3 | OTU deubiquitinase 3 | ![]() |
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2 | 2 | ||||||
MIRT701335 | NSD1 | nuclear receptor binding SET domain protein 1 | ![]() |
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2 | 2 | ||||||
MIRT702656 | ITGA3 | integrin subunit alpha 3 | ![]() |
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2 | 2 | ||||||
MIRT703618 | FBXO45 | F-box protein 45 | ![]() |
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2 | 2 | ||||||
MIRT704673 | CHTOP | chromatin target of PRMT1 | ![]() |
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2 | 2 | ||||||
MIRT708894 | ZNF780A | zinc finger protein 780A | ![]() |
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2 | 2 | ||||||
MIRT711620 | DGKH | diacylglycerol kinase eta | ![]() |
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2 | 2 | ||||||
MIRT713745 | TMEM81 | transmembrane protein 81 | ![]() |
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2 | 2 | ||||||
MIRT719712 | CD101 | CD101 molecule | ![]() |
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2 | 2 | ||||||
MIRT720294 | DLGAP3 | DLG associated protein 3 | ![]() |
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2 | 2 | ||||||
MIRT722606 | CCDC152 | coiled-coil domain containing 152 | ![]() |
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2 | 2 | ||||||
MIRT724566 | ACSBG1 | acyl-CoA synthetase bubblegum family member 1 | ![]() |
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2 | 2 |
miRNA-Drug Associations | ||||||||||||||||||
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miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||
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