miRTarBase - #MIRT556312


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pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAP2K4   
Synonyms JNKK, JNKK1, MAPKK4, MEK4, MKK4, PRKMK4, SAPKK-1, SAPKK1, SEK1, SERK1, SKK1
Description mitogen-activated protein kinase kinase 4
Transcript NM_003010   
Expression
Putative miRNA Targets on MAP2K4
3'UTR of MAP2K4
(miRNA target sites are highlighted)		 
>MAP2K4|NM_003010|3'UTR
   1 TATCGCTGCTACATCAGACTCTAGAAAAAAGGGCTGAGAGGAAGCAAGACGTAAAGAATTTTCATCCCGTATCACAGTGT
  81 TTTTATTGCTCGCCCAGACACCATGTGCAATAAGATTGGTGTTCGTTTCCATCATGTCTGTATACTCCTGTCACCTAGAA
 161 CGTGCATCCTTGTAATACCTGATTGATCACACAGTGTTAGTGCTGGTCAGAGAGACCTCATCCTGCTCTTTTGTGATGAA
 241 CATATTCATGAAATGTGGAAGTCAGTACGATCAAGTTGTTGACTGTGATTAGATCACATCTTAAATTCATTTCTAGACTC
 321 AAAACCTGGAGATGCAGCTACTGGAATGGTGTTTTGTCAGACTTCCAAATCCTGGAAGGACACAGTGATGAATGTACTAT
 401 GTCTGAACATAGAAACTCGGGCTTGAGTGAGAAGAGCTTGCACAGCCAACGAGACACATTGCCTTCTGGAGCTGGGAGAC
 481 AAAGGAGGAATTTACTTTCTTCACCAAGTGCAATAGATTACTGATGTGATATTCTGTTGCTTTACAGTTACAGTTGATGT
 561 TTGGGGATCGATGTGCTCAGCCAAATTTCCTGTTTGAAATATCATGTTAAATTAGAATGAATTTATCTTTACCAAAAACC
 641 ATGTTGCGTTCAAAGAGGTGAACATTAAAATATAGAGACAGGACAGAATGTGTTCTTTTCTCCTTTACCAGTCCTATTTT
 721 TCAATGGGAAGACTCAGGAGTCTGCCACTTGTCAAAGAAGGTGCTGATCCTAAGAATTTTTCATTCTCAGAATTCGGTGT
 801 GCTGCCAACTTGATGTTCCACCTGCCACAAACCACCAGGACTGAAAGAAGAAAACAGTACAGAAGGCAAAGTTTACAGAT
 881 GTTTTTAATTCTAGTATTTTATCTGGAACAACTTGTAGCAGCTATATATTTCCCCTTGGTCCCAAGCCTGATACTTTAGC
 961 CATCATAACTCACTAACAGGGAGAAGTAGCTAGTAGCAATGTGCCTTGATTGATTAGATAAAGATTTCTAGTAGGCAGCA
1041 AAAGACCAAATCTCAGTTGTTTGCTTCTTGCCATCACTGGTCCAGGTCTTCAGTTTCCGAATCTCTTTCCCTTCCCCTGT
1121 GGTCTATTGTCGCTATGTGACTTGCGCTTAATCCAATATTTTGCCTTTTTTCTATATCAAAAAACCTTTACAGTTAGCAG
1201 GGATGTTCCTTACCAAGGATTTTTAGCCCCAAATCTCTCATATTCGCTAGTGTTTAAAAGGCTAAGAATAGTGGGGCCCA
1281 GCCGATGTGGTAGGTGATAAAGAGGCATCTTTTCTAGAGACACATTGGACCAGATGAGGATCCGAAACGGCAGCCTTTAC
1361 GTTCATCACCTGCTAGAACCTCTCGTAGTCCATCACCATTTCTTGGCATTGGAATTCTACTGGAAAAAAATACAAAAAGC
1441 AAAACAAAACCCTCAGCACTGTTACAAGAGGCCATTTAAGTATCTTGTGCTTCTTCACTTACCCATTAGCCAGGTTCTCA
1521 TTAGGTTTTGCTTGGGCCTCCCTGGCACTGAACCTTAGGCTTTGTATGACAGTGAAGCAGCACTGTGAGTGGTTCAAGCA
1601 CACTGGAATATAAAACAGTCATGGCCTGAGATGCAGGTGATGCCATTACAGAACCAAATCGTGGCACGTATTGCTGTGTC
1681 TCCTCTCAGAGTGACAGTCATAAATACTGTCAAACAATAAAGGGAGAATGGTGCTGTTTAAAGTCACATCCCTGTAAATT
1761 GCAGAATTCAAAAGTGATTATCTCTTTGATCTACTTGCCTCATTTCCCTATCTTCTCCCCCACGGTATCCTAAACTTTAG
1841 ACTTCCCACTGTTCTGAAAGGAGACATTGCTCTATGTCTGCCTTCGACCACAGCAAGCCATCATCCTCCATTGCTCCCGG
1921 GGACTCAAGAGGAATCTGTTTCTCTGCTGTCAACTTCCCATCTGGCTCAGCATAGGGTCACTTTGCCATTATGCAAATGG
2001 AGATAAAAGCAATTCTGACTGTCCAGGAGCTAATCTGACCGTTCTATTGTGTGGATGACCACATAAGAAGGCAATTTTAG
2081 TGTATTAATCATAGATTATTATAAACTATAAACTTAAGGGCAAGGAGTTTATTACAATGTATCTTTATTAAAACAAAAGG
2161 GTGTATAGTGTTCACAAACTGTGAAAATAGTGTAAGAACTGTACATTGTGAGCTCTGGTTATTTTTCTCTTGTACCATAG
2241 AAAAATGTATAAAAATTATCAAAAAGCTAATGTGCAGGGATATTGCCTTATTTGTCTGTAAAAAATGGAGCTCAGTAACA
2321 TAACTGCTTCTTGGAGCTTTGGAATATTTTATCCTGTATTCTTGTTTGAATTCCTCCTCTATTTAAGATATATACATGGA
2401 ATCGAAGTGTTTATGTAATAGTTCTATCCTTTTGCCTGCAGGTCAGTTGTAATAAATCTAGGATGTGATGATGACTTTGT
2481 AATTTGATTTTCTGAAATCAGACCCTGAGAGGGGAAAATCTTAAAGTAAATTACATTAAATTATCTGTGCATTTCACACC
2561 AGGGAAAATGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auuAGGUAC----GUGUGUCCUCca 5'
             || |||     || ||||||  
Target 5' tttTCAATGGGAAGACTCAGGAGtc 3'
 718 - 742 132.00 -9.90
2 
miRNA  3' auUAGGUAC--GUGUGUCCUCca 5'
            ||:| ||  ::: ||||||  
Target 5' caATTC-TGACTGTCCAGGAGct 3'
 2010 - 2031 128.00 -10.50
3 
miRNA  3' auuaGGUACGUGUGUCCUCCa 5'
              ||: | || || |||| 
Target 5' gctcCCGGGGACTCAAGAGGa 3'
 1913 - 1933 125.00 -13.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15201838 4 COSMIC
COSN30677854 5 COSMIC
COSN32065052 28 COSMIC
COSN30645882 31 COSMIC
COSN31504262 31 COSMIC
COSN31487689 37 COSMIC
COSN13700681 40 COSMIC
COSN30751905 51 COSMIC
COSN31611911 57 COSMIC
COSN31610256 135 COSMIC
COSN30605360 148 COSMIC
COSN30505182 165 COSMIC
COSN26569892 172 COSMIC
COSN30108106 213 COSMIC
COSN26604435 215 COSMIC
COSN8831289 236 COSMIC
COSN8602349 405 COSMIC
COSN31529127 419 COSMIC
COSN28673266 432 COSMIC
COSN31591115 446 COSMIC
COSN30540989 503 COSMIC
COSN31529669 517 COSMIC
COSN8602350 535 COSMIC
COSN31557405 546 COSMIC
COSN229730 555 COSMIC
COSN31609641 625 COSMIC
COSN31541966 640 COSMIC
COSN31517214 775 COSMIC
COSN31519951 796 COSMIC
COSN26568620 895 COSMIC
COSN21669330 1274 COSMIC
COSN6650014 1329 COSMIC
COSN20188867 1662 COSMIC
COSN1713429 2064 COSMIC
COSN30172676 2068 COSMIC
COSN26508918 2124 COSMIC
COSN20243415 2250 COSMIC
COSN31479761 2314 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759895365 4 dbSNP
rs201971628 5 dbSNP
rs1160522880 8 dbSNP
rs753044476 20 dbSNP
rs189817203 22 dbSNP
rs1177317456 26 dbSNP
rs750313329 28 dbSNP
rs1440414957 29 dbSNP
rs758163020 36 dbSNP
rs1300906062 42 dbSNP
rs1328873603 43 dbSNP
rs757919548 49 dbSNP
rs1444294698 50 dbSNP
rs368292817 51 dbSNP
rs376888511 52 dbSNP
rs1376940685 66 dbSNP
rs1173871300 69 dbSNP
rs182465459 70 dbSNP
rs991391012 77 dbSNP
rs1447077528 78 dbSNP
rs1217388804 83 dbSNP
rs1471455387 86 dbSNP
rs139724158 89 dbSNP
rs565243535 92 dbSNP
rs185329765 104 dbSNP
rs977552536 111 dbSNP
rs755582365 125 dbSNP
rs754518168 126 dbSNP
rs1277957623 128 dbSNP
rs1162191662 130 dbSNP
rs1413774405 136 dbSNP
rs778639435 138 dbSNP
rs541396988 149 dbSNP
rs1401809070 151 dbSNP
rs1278849405 158 dbSNP
rs1320294154 162 dbSNP
rs933099258 163 dbSNP
rs1051435127 173 dbSNP
rs888807017 181 dbSNP
rs1373192745 188 dbSNP
rs943587891 196 dbSNP
rs190190304 202 dbSNP
rs1386400527 207 dbSNP
rs751116797 209 dbSNP
rs1243587953 211 dbSNP
rs1420115201 225 dbSNP
rs899306678 226 dbSNP
rs773452215 232 dbSNP
rs1283517036 234 dbSNP
rs1217729861 238 dbSNP
rs1447362213 241 dbSNP
rs1283547066 242 dbSNP
rs868621549 242 dbSNP
rs1206757986 243 dbSNP
rs575260150 259 dbSNP
rs1225401711 266 dbSNP
rs1232125778 269 dbSNP
rs1353218981 270 dbSNP
rs1433396058 276 dbSNP
rs1346168731 298 dbSNP
rs1317988135 304 dbSNP
rs1281475093 306 dbSNP
rs1464067275 327 dbSNP
rs993682136 336 dbSNP
rs1203885563 344 dbSNP
rs1397268930 352 dbSNP
rs530205553 357 dbSNP
rs1026780896 366 dbSNP
rs548739275 375 dbSNP
rs1411982419 383 dbSNP
rs1188492312 389 dbSNP
rs1462922916 393 dbSNP
rs1241337469 394 dbSNP
rs1049438 402 dbSNP
rs1185791242 403 dbSNP
rs1237265742 410 dbSNP
rs1470773420 419 dbSNP
rs1273702690 430 dbSNP
rs563431936 438 dbSNP
rs1160822984 439 dbSNP
rs1004076840 444 dbSNP
rs146597820 450 dbSNP
rs183470579 451 dbSNP
rs1270006924 452 dbSNP
rs1177410004 456 dbSNP
rs959395850 457 dbSNP
rs1373883498 464 dbSNP
rs570740002 475 dbSNP
rs1327162125 478 dbSNP
rs1450741872 483 dbSNP
rs991338612 498 dbSNP
rs1021515339 502 dbSNP
rs1336161499 509 dbSNP
rs1410765497 512 dbSNP
rs542637158 513 dbSNP
rs977289694 514 dbSNP
rs1277757102 518 dbSNP
rs924479052 521 dbSNP
rs748422493 522 dbSNP
rs1487424435 523 dbSNP
rs1234141930 525 dbSNP
rs954466763 533 dbSNP
rs1223668429 544 dbSNP
rs1306613460 551 dbSNP
rs188410287 555 dbSNP
rs1320887488 564 dbSNP
rs546555189 566 dbSNP
rs910190495 570 dbSNP
rs1255844126 571 dbSNP
rs1366046920 578 dbSNP
rs943033266 579 dbSNP
rs1037916538 585 dbSNP
rs568012626 597 dbSNP
rs535168966 598 dbSNP
rs1250331492 601 dbSNP
rs920852236 601 dbSNP
rs193245128 603 dbSNP
rs576184750 605 dbSNP
rs1047889723 612 dbSNP
rs906720725 618 dbSNP
rs1177318276 626 dbSNP
rs537272159 633 dbSNP
rs1480024657 643 dbSNP
rs1249242020 648 dbSNP
rs141440676 649 dbSNP
rs774589194 652 dbSNP
rs1055150998 655 dbSNP
rs577441740 658 dbSNP
rs541405516 664 dbSNP
rs1310996638 671 dbSNP
rs1010865686 674 dbSNP
rs1224460814 675 dbSNP
rs1349960962 676 dbSNP
rs1286457201 681 dbSNP
rs1416885311 687 dbSNP
rs1376236303 689 dbSNP
rs1021464279 698 dbSNP
rs764885646 704 dbSNP
rs1049439 706 dbSNP
rs1172239991 708 dbSNP
rs1396920620 710 dbSNP
rs968661720 713 dbSNP
rs28921113 717 dbSNP
rs1031489798 718 dbSNP
rs28921114 726 dbSNP
rs386576571 726 dbSNP
rs796558922 726 dbSNP
rs184089088 737 dbSNP
rs1284597734 738 dbSNP
rs910305030 748 dbSNP
rs1232049382 751 dbSNP
rs1475343987 753 dbSNP
rs1251569890 762 dbSNP
rs11555725 767 dbSNP
rs1482472280 771 dbSNP
rs1262803165 773 dbSNP
rs1217135857 791 dbSNP
rs563793589 796 dbSNP
rs1235193997 797 dbSNP
rs59832266 798 dbSNP
rs1048481585 804 dbSNP
rs1363833074 805 dbSNP
rs186704791 806 dbSNP
rs1271080885 814 dbSNP
rs1431564879 818 dbSNP
rs1386304211 820 dbSNP
rs201362372 821 dbSNP
rs1330387946 827 dbSNP
rs1373923998 828 dbSNP
rs1461503672 833 dbSNP
rs1476264484 842 dbSNP
rs1416789044 847 dbSNP
rs191563418 857 dbSNP
rs1429854132 861 dbSNP
rs1264333760 863 dbSNP
rs1187417045 865 dbSNP
rs1464877789 866 dbSNP
rs1266751778 868 dbSNP
rs1369749772 870 dbSNP
rs1425166109 880 dbSNP
rs1215710668 882 dbSNP
rs1055095564 896 dbSNP
rs1264885041 904 dbSNP
rs1304926393 919 dbSNP
rs1242889701 925 dbSNP
rs895242550 926 dbSNP
rs528384363 927 dbSNP
rs777910390 934 dbSNP
rs1363028104 945 dbSNP
rs183860741 955 dbSNP
rs1043689070 957 dbSNP
rs1441474446 959 dbSNP
rs1389390633 969 dbSNP
rs1160906936 978 dbSNP
rs1463216885 995 dbSNP
rs1443041330 998 dbSNP
rs902541481 999 dbSNP
rs998752463 1000 dbSNP
rs565054493 1003 dbSNP
rs1032024002 1019 dbSNP
rs954528193 1031 dbSNP
rs1266804062 1034 dbSNP
rs1208088180 1040 dbSNP
rs1481771015 1049 dbSNP
rs1252105147 1053 dbSNP
rs1227466480 1056 dbSNP
rs1008742120 1057 dbSNP
rs1305270834 1059 dbSNP
rs1295808707 1060 dbSNP
rs1341925536 1072 dbSNP
rs1330396821 1074 dbSNP
rs1017481412 1077 dbSNP
rs1392590604 1081 dbSNP
rs1396857391 1087 dbSNP
rs530627261 1089 dbSNP
rs568009724 1099 dbSNP
rs188576778 1100 dbSNP
rs1388715301 1102 dbSNP
rs1175878255 1108 dbSNP
rs544055289 1109 dbSNP
rs1209380455 1121 dbSNP
rs1377538282 1122 dbSNP
rs192717367 1123 dbSNP
rs973174439 1127 dbSNP
rs1027311137 1132 dbSNP
rs1448913832 1133 dbSNP
rs1204708462 1135 dbSNP
rs1482172052 1136 dbSNP
rs759629494 1137 dbSNP
rs1344267831 1139 dbSNP
rs1273004488 1145 dbSNP
rs568630474 1146 dbSNP
rs1335849108 1147 dbSNP
rs1389291541 1148 dbSNP
rs1287089839 1157 dbSNP
rs1407647100 1160 dbSNP
rs761285228 1164 dbSNP
rs35163626 1166 dbSNP
rs1445060167 1167 dbSNP
rs1165389249 1171 dbSNP
rs928209569 1172 dbSNP
rs539172755 1175 dbSNP
rs1171349870 1179 dbSNP
rs990939743 1185 dbSNP
rs373075028 1187 dbSNP
rs1386539830 1192 dbSNP
rs1259832318 1193 dbSNP
rs1188074227 1203 dbSNP
rs570995174 1205 dbSNP
rs1049441 1216 dbSNP
rs1049442 1227 dbSNP
rs1441621558 1230 dbSNP
rs1276178698 1233 dbSNP
rs1432379329 1244 dbSNP
rs1319532533 1247 dbSNP
rs1266966506 1251 dbSNP
rs946789596 1260 dbSNP
rs377467531 1263 dbSNP
rs1317766247 1265 dbSNP
rs1446758718 1267 dbSNP
rs1340253930 1269 dbSNP
rs1332562342 1273 dbSNP
rs1049443 1282 dbSNP
rs1402972204 1284 dbSNP
rs1320385884 1285 dbSNP
rs1158570722 1286 dbSNP
rs902487359 1290 dbSNP
rs1420373118 1292 dbSNP
rs935329976 1299 dbSNP
rs1053006065 1308 dbSNP
rs1352990895 1325 dbSNP
rs890359018 1326 dbSNP
rs4792219 1329 dbSNP
rs1465328146 1332 dbSNP
rs140706208 1339 dbSNP
rs1185139556 1340 dbSNP
rs1336323354 1343 dbSNP
rs1289886706 1344 dbSNP
rs1227417275 1345 dbSNP
rs542266426 1349 dbSNP
rs1423135285 1350 dbSNP
rs1282839382 1353 dbSNP
rs1433283338 1357 dbSNP
rs900368453 1361 dbSNP
rs1433459464 1362 dbSNP
rs557420020 1371 dbSNP
rs575793095 1385 dbSNP
rs867970900 1386 dbSNP
rs1169468093 1388 dbSNP
rs1449844751 1392 dbSNP
rs1389542979 1393 dbSNP
rs1272207826 1399 dbSNP
rs546021188 1409 dbSNP
rs1316292529 1424 dbSNP
rs150125305 1433 dbSNP
rs1198462744 1436 dbSNP
rs185127839 1442 dbSNP
rs1449551534 1450 dbSNP
rs1157958844 1451 dbSNP
rs1343339167 1460 dbSNP
rs138715568 1460 dbSNP
rs1297243446 1461 dbSNP
rs1226887500 1462 dbSNP
rs991060540 1464 dbSNP
rs1454261804 1465 dbSNP
rs561848490 1466 dbSNP
rs1331118504 1474 dbSNP
rs916718655 1486 dbSNP
rs1389352561 1487 dbSNP
rs1166430649 1489 dbSNP
rs1304915457 1490 dbSNP
rs1377457996 1491 dbSNP
rs1455569997 1492 dbSNP
rs1425743763 1493 dbSNP
rs528827767 1494 dbSNP
rs1476747022 1499 dbSNP
rs550147826 1505 dbSNP
rs1205437959 1510 dbSNP
rs979445489 1511 dbSNP
rs1274404237 1512 dbSNP
rs190166554 1513 dbSNP
rs1331317306 1525 dbSNP
rs1226713597 1530 dbSNP
rs1267596512 1532 dbSNP
rs1324454535 1540 dbSNP
rs1365600685 1546 dbSNP
rs935461626 1556 dbSNP
rs1410688903 1564 dbSNP
rs182288643 1566 dbSNP
rs891149587 1572 dbSNP
rs944594322 1577 dbSNP
rs1359729229 1584 dbSNP
rs1038984510 1590 dbSNP
rs35027510 1598 dbSNP
rs1409568600 1603 dbSNP
rs1182214518 1607 dbSNP
rs1252669600 1627 dbSNP
rs1472090457 1628 dbSNP
rs1249123975 1636 dbSNP
rs1471318987 1638 dbSNP
rs1484435890 1644 dbSNP
rs1180759126 1645 dbSNP
rs1256898851 1651 dbSNP
rs1210067401 1656 dbSNP
rs548929345 1661 dbSNP
rs994677092 1662 dbSNP
rs751434207 1668 dbSNP
rs886181583 1669 dbSNP
rs142822302 1677 dbSNP
rs1299229349 1679 dbSNP
rs1286663558 1683 dbSNP
rs1004674744 1684 dbSNP
rs1302007012 1688 dbSNP
rs1445768108 1693 dbSNP
rs1408539515 1696 dbSNP
rs1035080828 1698 dbSNP
rs1456244991 1711 dbSNP
rs1166665669 1716 dbSNP
rs753340576 1716 dbSNP
rs553603101 1718 dbSNP
rs1221134145 1725 dbSNP
rs568748222 1730 dbSNP
rs1023843732 1732 dbSNP
rs1482585604 1758 dbSNP
rs536188976 1761 dbSNP
rs189374285 1772 dbSNP
rs980000346 1776 dbSNP
rs1266242857 1780 dbSNP
rs1247302010 1781 dbSNP
rs180737708 1783 dbSNP
rs956984930 1793 dbSNP
rs1049444 1799 dbSNP
rs1049445 1800 dbSNP
rs1432148263 1801 dbSNP
rs752444743 1802 dbSNP
rs1394042006 1805 dbSNP
rs539873890 1811 dbSNP
rs1268948453 1812 dbSNP
rs557978166 1816 dbSNP
rs1481152731 1817 dbSNP
rs912540518 1821 dbSNP
rs572955852 1824 dbSNP
rs532604526 1825 dbSNP
rs1458138986 1828 dbSNP
rs1367499450 1829 dbSNP
rs1164597690 1830 dbSNP
rs1038932037 1833 dbSNP
rs1392347369 1843 dbSNP
rs921854614 1849 dbSNP
rs1464808450 1852 dbSNP
rs561571491 1855 dbSNP
rs1488954694 1857 dbSNP
rs930582226 1864 dbSNP
rs747382916 1866 dbSNP
rs1344058810 1875 dbSNP
rs1049365757 1879 dbSNP
rs886298488 1880 dbSNP
rs1005010123 1883 dbSNP
rs1056235463 1886 dbSNP
rs896115338 1887 dbSNP
rs570349832 1889 dbSNP
rs1011874766 1911 dbSNP
rs1023290482 1914 dbSNP
rs968266822 1917 dbSNP
rs1449446024 1919 dbSNP
rs1428329995 1920 dbSNP
rs1201183255 1923 dbSNP
rs1001146096 1927 dbSNP
rs1031572420 1928 dbSNP
rs1438784557 1930 dbSNP
rs1193268392 1933 dbSNP
rs1484137312 1937 dbSNP
rs956909924 1939 dbSNP
rs1275146136 1947 dbSNP
rs987269021 1954 dbSNP
rs1803981 1956 dbSNP
rs374613560 1958 dbSNP
rs1276530509 1966 dbSNP
rs771371631 1972 dbSNP
rs1330002178 1974 dbSNP
rs912655032 1987 dbSNP
rs1309066008 1988 dbSNP
rs1215388789 1989 dbSNP
rs1429511984 2000 dbSNP
rs1395044798 2004 dbSNP
rs1174841059 2009 dbSNP
rs975405184 2032 dbSNP
rs1377173527 2039 dbSNP
rs1197306206 2040 dbSNP
rs573591463 2041 dbSNP
rs1049001581 2042 dbSNP
rs185090127 2047 dbSNP
rs1280385534 2049 dbSNP
rs940538048 2064 dbSNP
rs1056106567 2065 dbSNP
rs1253785833 2070 dbSNP
rs896230052 2073 dbSNP
rs1245630122 2083 dbSNP
rs1287314201 2085 dbSNP
rs1485966651 2086 dbSNP
rs1011989097 2090 dbSNP
rs562100258 2096 dbSNP
rs1044691395 2097 dbSNP
rs532801531 2098 dbSNP
rs1336514202 2100 dbSNP
rs1397148940 2106 dbSNP
rs1402078729 2108 dbSNP
rs1187924346 2114 dbSNP
rs1392393675 2120 dbSNP
rs1458876055 2124 dbSNP
rs1412724964 2132 dbSNP
rs377631607 2138 dbSNP
rs748132714 2142 dbSNP
rs903555542 2142 dbSNP
rs1239008513 2144 dbSNP
rs1001497643 2150 dbSNP
rs1407592410 2151 dbSNP
rs1441813123 2154 dbSNP
rs1031272395 2155 dbSNP
rs1321599710 2155 dbSNP
rs575309080 2162 dbSNP
rs993299076 2168 dbSNP
rs560013150 2178 dbSNP
rs892592198 2180 dbSNP
rs1266865781 2181 dbSNP
rs146989618 2183 dbSNP
rs1357967186 2191 dbSNP
rs546863393 2200 dbSNP
rs568709937 2203 dbSNP
rs964122032 2205 dbSNP
rs1389911014 2213 dbSNP
rs1382916760 2214 dbSNP
rs1335329990 2219 dbSNP
rs975519554 2230 dbSNP
rs1389507585 2235 dbSNP
rs1319914134 2237 dbSNP
rs1399223938 2238 dbSNP
rs775548386 2247 dbSNP
rs1416187277 2248 dbSNP
rs1163694710 2250 dbSNP
rs1358296663 2253 dbSNP
rs1383091869 2261 dbSNP
rs1190442821 2273 dbSNP
rs1026975007 2275 dbSNP
rs1465263417 2281 dbSNP
rs952760609 2283 dbSNP
rs1213013577 2285 dbSNP
rs1226565951 2288 dbSNP
rs985072606 2291 dbSNP
rs1317041176 2299 dbSNP
rs907792847 2300 dbSNP
rs940637164 2312 dbSNP
rs28921115 2315 dbSNP
rs1245885530 2320 dbSNP
rs1231285529 2321 dbSNP
rs1366528672 2323 dbSNP
rs1338784947 2330 dbSNP
rs1463815434 2336 dbSNP
rs538194763 2356 dbSNP
rs1188266269 2357 dbSNP
rs917770650 2359 dbSNP
rs1351896335 2361 dbSNP
rs1324471491 2371 dbSNP
rs947792171 2377 dbSNP
rs1474038251 2378 dbSNP
rs1162005562 2380 dbSNP
rs1044803816 2390 dbSNP
rs28921116 2392 dbSNP
rs771988128 2393 dbSNP
rs551297905 2397 dbSNP
rs1401423730 2404 dbSNP
rs569233824 2405 dbSNP
rs936355059 2419 dbSNP
rs1053083628 2427 dbSNP
rs892713513 2430 dbSNP
rs1272909578 2446 dbSNP
rs1213267304 2447 dbSNP
rs773074624 2461 dbSNP
rs537682530 2479 dbSNP
rs1337104125 2492 dbSNP
rs1008936178 2494 dbSNP
rs1391598759 2501 dbSNP
rs1342063571 2502 dbSNP
rs1309667915 2506 dbSNP
rs539463944 2506 dbSNP
rs1283569342 2507 dbSNP
rs558202320 2510 dbSNP
rs76996718 2512 dbSNP
rs1019775986 2518 dbSNP
rs1373426420 2521 dbSNP
rs1168234794 2527 dbSNP
rs191257357 2530 dbSNP
rs183170582 2531 dbSNP
rs1190100164 2536 dbSNP
rs1027073111 2540 dbSNP
rs952786535 2541 dbSNP
rs1052139112 2542 dbSNP
rs982794513 2544 dbSNP
rs1016048078 2548 dbSNP
rs1232599444 2552 dbSNP
rs777773191 2559 dbSNP
rs1203072758 2562 dbSNP
rs1314410484 2568 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6416.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auuagguacgugugUCCUCCa 5'
                        |||||| 
Target 5' -----------caaAGGAGGa 3'
 		1 - 10
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000415385.3 | 3UTR | CAAAGGAGGAAUUUACUUUCUUCACCAAGUGCAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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