pre-miRNA Information
pre-miRNA hsa-mir-4666a   
Genomic Coordinates chr1: 228462074 - 228462152
Description Homo sapiens miR-4666a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4666a-5p
Sequence 10| AUACAUGUCAGAUUGUAUGCC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1288210208 3 dbSNP
rs1333314792 5 dbSNP
rs562096649 7 dbSNP
rs1324809033 10 dbSNP
rs1027635037 13 dbSNP
rs1351630778 15 dbSNP
rs1034879562 18 dbSNP
rs1383267208 21 dbSNP
Putative Targets

Gene Information
Gene Symbol JAZF1   
Synonyms TIP27, ZNF802
Description JAZF zinc finger 1
Transcript NM_175061   
Expression
Putative miRNA Targets on JAZF1
3'UTR of JAZF1
(miRNA target sites are highlighted)
>JAZF1|NM_175061|3'UTR
   1 CATGCTGGTCATAACTGTGCCAAGAAATCCTCACCAGCAGTTGCTGATTTTGAAAACAGCCACCTTTTTTCAGGGGAAGC
  81 ATTCAGCAACCCTTTAAAGAAAAAGAATTAAATGCATGCTTTAAATTTTTTCTGTAATTTTGGAATGATGTATCTTTGTA
 161 GAGTTAATGATTTTGTACATTTGCACATGTAATCATCATACCCATTTTCATTACTTTGATATAAGGTGCTAAACAAAAAA
 241 AGCTCTAGGTTCTTCAGCACATTTCCCCCAAAACAAAATAAAATTGAGGGCATGTTGCATATTGTTGAATTGTATTGCGG
 321 TGGTATCAACCTGGGGGGAGGAGGGGCTGGCACTGAGATTTTTTTTTCAAGATTGTAATGTGATTGAAGTTTTCAACACA
 401 TCAACTCACATATGTTCAAAACCAAAATAATACCTTCATTATCAAACTGGTTACCATGCCTTACATAATGGAGTTAGTAT
 481 TTGTGAGTAGAAAGACTTTAGGTAATGGAAATATAAATAAGAAAGAATGTTTAACATAATATGCTAAAAATATTTTCATA
 561 TTTAAATAACATACGTAAAGGTGTGCTTTCTGTGTTTTATATTATCTTGCAAATCCTTTTGCCCTTTAAAAAGCTGAAAA
 641 TCTTGCCATCTGACTTACTAGTCATTTTAGTGTTATAAATGGCATTTTGTACAAAATAGTCTATTCAGTTCGTTCATTCA
 721 TTTAACACACATTGATTGAGTGCCTGCTGGGTACAAGGGATTCAATTTATGCCTATTGATATCTGCGGACCAAGATACCC
 801 ATTTAGTGAAATACTTTTTTCCCTGAAATCTGTTAGAAAAGACTTTGAAATACTTCAGTGCAAAGTGTGTGTGTGTGAAG
 881 TTTAGTTATATCTTCATCTTCAGATGAAGTTTTAAAGCACTTTGTAGTTCTCTATTGCCAACAATTTAATGTTTATGTGT
 961 TGCCAATTCTTGCAACCACTGCCCTACCAAACCTGTGGGTTGCAAATCAGAACTAAAATTCTAAGCACGTTTCAAAGATG
1041 AACACTTTTGTTAAGACCCCTATTGCCTCTTCTTCATGCTCATTTTTTACTTTTTTTAAAAGGTACTTTTCTCATCACAT
1121 TGTAGAGAGGTCTGCATTCTCATTGGAAATGTCTGTTTAGCTTTATAAAACAAACACTTTGCTGAAATAGGAAAATGAGC
1201 CTTATTGACAATTAAGTGCTTCTTGCAGCAGGTGGTCAAAGAAAAGCATGACTAATACGACCTATTAGAGTAATCTACAT
1281 CTGGACCATTCCTTAAGTTTTTCCTCACCGACAGTACCATCATGCCTTGAGTGTTCTTTTCTCCCAAGTGCTATTCCTTA
1361 AACACGAGAGTTTACCAGTTGCCTAATAATGCAATAAAAAATGCTTTGAGATAGCTAACTGCCCATAAAACAAACTCAAA
1441 TTGCTTATAAAGTTTCTTCCCATGTTCCCATTTGATGAAAAGTCTTACATCACATATAACTGGGAAGCAGGGGTCCCTCC
1521 TCAATTTTCAGACATTTTGAAAGGATGACAGTTCTGTTTGTTAGATGAGTAAACCTCTATATTCATAAGTTCTAAAATCC
1601 TTCATTATGAGGGATTCAAAGTATTTATAAAAACACTGCCCTCTAAAAATTTCCTCAGATCTGAAGTATGGTCTTGGTCC
1681 TGAATATACAGTGTTATCCTATGTTTAAAAGGGTGATCCAGACATGAGACGCAACTAGTTGGTGCATAAGAAGGCCCCAC
1761 TTGGCTATTTCATATCTACCTACAATTGACCAAAAAAAATTTTTTAGGCCAGCAATTATTATTTAGCTTCGCTCTTTCTA
1841 GTGCAAGAAACTGCAGGCTGGATCAGTAGTTCAACAGCTAAACAGTCATAAAATAGTCATTGTGCATGTTAAATTTCTTT
1921 CAATGCTTTCAAAGATAAATTCCAATTTCTATTTACTTATTCATTGTGACAGTATTACTAAACAGGTAAGGATGGGAATA
2001 TTTTGTTATACTGTGTATAGTGAATGTATTGTACTGTGTCTGTGAAAACTGTGCTTTAAATTATATTTTCATATGTTTTG
2081 TTGGGGACAGAGCACATTAAGTCTGAAAGCAACAGAGGTTTGTTTTAGAACTGAAGGCAATTTAATCAAAATTCCTGTCA
2161 AGAAAAGCTGCTTATAAATGTAAATGAAATCACATTTAAAATAAACTGCCTCTGACCCAAAAATAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ccGUAUGUUAGAC-UGUACAUa 5'
            ::||| ||:|| ||||||| 
Target 5' ttTGTAC-ATTTGCACATGTAa 3'
172 - 192 162.00 -11.70
2
miRNA  3' ccguAUGUUAGACUGUACAua 5'
              ||:| |:| |:||||  
Target 5' aaatTATATTTTCATATGTtt 3'
2058 - 2078 125.00 -5.20
3
miRNA  3' ccgUAUGUUAG--ACUGUACAua 5'
             ||| |||:   |:|||||  
Target 5' aaaATAAAATTGAGGGCATGTtg 3'
275 - 297 124.00 -8.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26980864 59 COSMIC
COSN30738999 67 COSMIC
COSN30513960 74 COSMIC
COSN30498790 122 COSMIC
COSN17183361 125 COSMIC
COSN31574338 130 COSMIC
COSN21415004 186 COSMIC
COSN31536924 328 COSMIC
COSN31607555 392 COSMIC
COSN31556849 545 COSMIC
COSN17038005 685 COSMIC
COSN31527798 711 COSMIC
COSN26640039 743 COSMIC
COSN30538461 786 COSMIC
COSN31543372 806 COSMIC
COSN20091548 841 COSMIC
COSN24302014 1251 COSMIC
COSN31540901 1291 COSMIC
COSN31589990 1365 COSMIC
COSN15838395 1389 COSMIC
COSN28679592 1408 COSMIC
COSN20091547 1445 COSMIC
COSN31519891 1632 COSMIC
COSN22506606 1642 COSMIC
COSN31585891 1651 COSMIC
COSN25817554 1731 COSMIC
COSN31544073 1800 COSMIC
COSN26554048 1810 COSMIC
COSN31530352 1819 COSMIC
COSN31526935 1838 COSMIC
COSN28639688 1847 COSMIC
COSN28201510 1923 COSMIC
COSN31521257 1949 COSMIC
COSN26262888 1981 COSMIC
COSN31548267 2040 COSMIC
COSN28758483 2076 COSMIC
COSN26677430 2088 COSMIC
COSN31548237 2220 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1201213595 7 dbSNP
rs1162287932 9 dbSNP
rs781028816 9 dbSNP
rs1431459295 10 dbSNP
rs199875128 12 dbSNP
rs370104745 17 dbSNP
rs1396565130 20 dbSNP
rs200932726 20 dbSNP
rs1314712404 22 dbSNP
rs377206643 24 dbSNP
rs1271544894 25 dbSNP
rs1342352362 28 dbSNP
rs1413229955 32 dbSNP
rs758064197 34 dbSNP
rs752223733 37 dbSNP
rs372557397 43 dbSNP
rs1221985700 49 dbSNP
rs1272977414 57 dbSNP
rs1164761581 68 dbSNP
rs1480483457 72 dbSNP
rs774215228 82 dbSNP
rs1471709655 85 dbSNP
rs145217792 89 dbSNP
rs1258791028 93 dbSNP
rs572793076 96 dbSNP
rs182104681 97 dbSNP
rs1390453459 99 dbSNP
rs149983347 101 dbSNP
rs774304272 112 dbSNP
rs775371532 120 dbSNP
rs1389340451 123 dbSNP
rs1466305148 133 dbSNP
rs898384939 136 dbSNP
rs866858998 148 dbSNP
rs1039516298 149 dbSNP
rs568525406 150 dbSNP
rs111924759 159 dbSNP
rs1171098294 160 dbSNP
rs952650860 164 dbSNP
rs556734411 165 dbSNP
rs1307288987 166 dbSNP
rs1234415309 170 dbSNP
rs1258346442 177 dbSNP
rs1026992920 180 dbSNP
rs1202528022 186 dbSNP
rs912675437 197 dbSNP
rs991537872 199 dbSNP
rs1465818552 202 dbSNP
rs537847097 204 dbSNP
rs1033624925 219 dbSNP
rs1003772493 221 dbSNP
rs561630689 222 dbSNP
rs1334678883 223 dbSNP
rs1289158942 225 dbSNP
rs1177944178 242 dbSNP
rs1375900176 242 dbSNP
rs906378530 253 dbSNP
rs1411905004 255 dbSNP
rs1020623369 262 dbSNP
rs1009280699 263 dbSNP
rs1437285836 265 dbSNP
rs1348670325 268 dbSNP
rs570850892 271 dbSNP
rs1053383445 280 dbSNP
rs1437346085 282 dbSNP
rs1303818983 285 dbSNP
rs932361299 286 dbSNP
rs771635295 288 dbSNP
rs1041314819 289 dbSNP
rs1269252119 291 dbSNP
rs1350363911 299 dbSNP
rs923950829 312 dbSNP
rs552171097 315 dbSNP
rs908712028 318 dbSNP
rs190282399 319 dbSNP
rs911448832 321 dbSNP
rs745369017 323 dbSNP
rs991036472 325 dbSNP
rs1047141597 330 dbSNP
rs1159355473 333 dbSNP
rs566449507 334 dbSNP
rs1156984785 337 dbSNP
rs1458630567 344 dbSNP
rs201958658 344 dbSNP
rs1035470286 350 dbSNP
rs1409062200 353 dbSNP
rs1003056536 354 dbSNP
rs951108304 356 dbSNP
rs1352848552 357 dbSNP
rs1176099059 358 dbSNP
rs541418718 362 dbSNP
rs201755269 368 dbSNP
rs995095088 368 dbSNP
rs749372266 369 dbSNP
rs778639529 374 dbSNP
rs756794715 377 dbSNP
rs1490144341 378 dbSNP
rs547944536 384 dbSNP
rs1006747318 386 dbSNP
rs529882796 387 dbSNP
rs1471550502 408 dbSNP
rs187048138 411 dbSNP
rs781363827 413 dbSNP
rs1424409971 414 dbSNP
rs1167176152 416 dbSNP
rs970501573 418 dbSNP
rs550680343 430 dbSNP
rs531998356 431 dbSNP
rs957766910 432 dbSNP
rs1219879766 433 dbSNP
rs1032081819 434 dbSNP
rs923980189 447 dbSNP
rs996891139 452 dbSNP
rs946690599 457 dbSNP
rs1310212232 462 dbSNP
rs1358256344 475 dbSNP
rs1228917273 478 dbSNP
rs780761782 479 dbSNP
rs899517892 483 dbSNP
rs1481921059 485 dbSNP
rs1321003738 500 dbSNP
rs1203748242 504 dbSNP
rs1041652237 514 dbSNP
rs1008485575 517 dbSNP
rs1343041180 524 dbSNP
rs1157997829 528 dbSNP
rs887391261 543 dbSNP
rs113399875 547 dbSNP
rs1047256781 566 dbSNP
rs916861899 569 dbSNP
rs748894906 570 dbSNP
rs991462786 572 dbSNP
rs140006286 574 dbSNP
rs73297549 575 dbSNP
rs1360238776 592 dbSNP
rs1055897259 598 dbSNP
rs1449644338 601 dbSNP
rs1334081994 605 dbSNP
rs983604313 611 dbSNP
rs951137353 612 dbSNP
rs1299281902 616 dbSNP
rs1454242833 616 dbSNP
rs560776400 619 dbSNP
rs1213763926 620 dbSNP
rs1210940319 621 dbSNP
rs766993960 621 dbSNP
rs1279311913 626 dbSNP
rs981884225 640 dbSNP
rs1463872054 647 dbSNP
rs758612089 648 dbSNP
rs970617557 650 dbSNP
rs1260346826 655 dbSNP
rs1189462383 660 dbSNP
rs1460885063 660 dbSNP
rs750475255 663 dbSNP
rs1474664670 665 dbSNP
rs1167680067 667 dbSNP
rs1313953393 680 dbSNP
rs1416682230 680 dbSNP
rs1299320003 683 dbSNP
rs1404736723 692 dbSNP
rs368430649 697 dbSNP
rs1322207552 699 dbSNP
rs556023989 703 dbSNP
rs1429822959 706 dbSNP
rs1370128678 708 dbSNP
rs891010662 711 dbSNP
rs957879833 712 dbSNP
rs1359622013 716 dbSNP
rs1032486110 719 dbSNP
rs902632636 731 dbSNP
rs1323009052 734 dbSNP
rs1043819032 736 dbSNP
rs996615070 738 dbSNP
rs149951473 740 dbSNP
rs564595484 740 dbSNP
rs1466262162 743 dbSNP
rs964013869 746 dbSNP
rs1171178230 749 dbSNP
rs374846172 752 dbSNP
rs1007935456 758 dbSNP
rs761889401 765 dbSNP
rs1191112517 767 dbSNP
rs746257776 769 dbSNP
rs1047373613 775 dbSNP
rs1261473369 776 dbSNP
rs1182623128 779 dbSNP
rs1457360973 782 dbSNP
rs1484371889 783 dbSNP
rs995643974 786 dbSNP
rs575131563 787 dbSNP
rs1210213269 796 dbSNP
rs776885807 808 dbSNP
rs1382095711 829 dbSNP
rs556473608 832 dbSNP
rs781579710 840 dbSNP
rs1256942862 841 dbSNP
rs1323745338 841 dbSNP
rs1343045131 841 dbSNP
rs1402868825 843 dbSNP
rs939609857 843 dbSNP
rs556360261 851 dbSNP
rs1275196744 853 dbSNP
rs1282629658 861 dbSNP
rs898682805 862 dbSNP
rs1229133489 865 dbSNP
rs1281380765 865 dbSNP
rs1351009959 865 dbSNP
rs1348567924 871 dbSNP
rs747779021 878 dbSNP
rs759157910 878 dbSNP
rs928199442 878 dbSNP
rs754552153 885 dbSNP
rs1305511678 888 dbSNP
rs984064855 890 dbSNP
rs929470024 892 dbSNP
rs918366438 903 dbSNP
rs973810899 906 dbSNP
rs554472870 917 dbSNP
rs1396442652 918 dbSNP
rs538368622 922 dbSNP
rs1056242688 923 dbSNP
rs937434247 926 dbSNP
rs1392417549 927 dbSNP
rs907320966 933 dbSNP
rs1302270877 934 dbSNP
rs763831692 939 dbSNP
rs985103999 943 dbSNP
rs1045715380 950 dbSNP
rs1411608251 952 dbSNP
rs1326703180 954 dbSNP
rs1413611984 957 dbSNP
rs1334060890 958 dbSNP
rs955509961 959 dbSNP
rs1285060902 966 dbSNP
rs183762027 967 dbSNP
rs946082296 971 dbSNP
rs913793634 975 dbSNP
rs1170956454 977 dbSNP
rs999386965 981 dbSNP
rs902327734 985 dbSNP
rs1022115914 986 dbSNP
rs988039287 987 dbSNP
rs1198087617 992 dbSNP
rs936471706 996 dbSNP
rs1011010796 1000 dbSNP
rs760457604 1004 dbSNP
rs577280379 1013 dbSNP
rs1055538469 1019 dbSNP
rs755543552 1026 dbSNP
rs147478753 1028 dbSNP
rs1047954956 1029 dbSNP
rs1431331475 1030 dbSNP
rs773695136 1033 dbSNP
rs770640806 1035 dbSNP
rs1296446161 1036 dbSNP
rs929535519 1037 dbSNP
rs1019804842 1050 dbSNP
rs748941778 1061 dbSNP
rs1254112655 1070 dbSNP
rs1450744246 1072 dbSNP
rs1314555557 1076 dbSNP
rs1207154369 1079 dbSNP
rs777450955 1082 dbSNP
rs986450536 1083 dbSNP
rs1337346558 1088 dbSNP
rs1037799283 1090 dbSNP
rs1201489070 1096 dbSNP
rs1250732164 1097 dbSNP
rs1459543569 1113 dbSNP
rs1182603141 1114 dbSNP
rs951039249 1118 dbSNP
rs1025878656 1133 dbSNP
rs1245245589 1138 dbSNP
rs995760845 1145 dbSNP
rs533943884 1149 dbSNP
rs1168026816 1157 dbSNP
rs941116791 1158 dbSNP
rs1372471227 1160 dbSNP
rs898777781 1173 dbSNP
rs1174195342 1177 dbSNP
rs1323347644 1177 dbSNP
rs1290992935 1181 dbSNP
rs1336393432 1183 dbSNP
rs1366177511 1188 dbSNP
rs1384315688 1196 dbSNP
rs1293918951 1197 dbSNP
rs1034521433 1200 dbSNP
rs1002134009 1205 dbSNP
rs1265468917 1210 dbSNP
rs907272614 1211 dbSNP
rs1320880866 1225 dbSNP
rs985561340 1235 dbSNP
rs1268419464 1246 dbSNP
rs73075359 1248 dbSNP
rs922532440 1255 dbSNP
rs946028633 1258 dbSNP
rs1433489364 1259 dbSNP
rs1201595995 1264 dbSNP
rs891803529 1264 dbSNP
rs1052272127 1266 dbSNP
rs936582878 1274 dbSNP
rs925228450 1277 dbSNP
rs747368354 1278 dbSNP
rs548127949 1279 dbSNP
rs1345823170 1295 dbSNP
rs1022145525 1299 dbSNP
rs942555636 1299 dbSNP
rs1287271107 1300 dbSNP
rs912285019 1305 dbSNP
rs986565079 1309 dbSNP
rs544254745 1310 dbSNP
rs1473055565 1311 dbSNP
rs1344143542 1325 dbSNP
rs568747422 1337 dbSNP
rs1414529650 1341 dbSNP
rs1033763888 1350 dbSNP
rs1288460628 1351 dbSNP
rs1318145650 1352 dbSNP
rs191500697 1354 dbSNP
rs1179716579 1363 dbSNP
rs1025322129 1365 dbSNP
rs1213224318 1365 dbSNP
rs1488720802 1366 dbSNP
rs1224418115 1370 dbSNP
rs780722614 1373 dbSNP
rs187624610 1377 dbSNP
rs1480087438 1381 dbSNP
rs962974566 1382 dbSNP
rs1035044845 1386 dbSNP
rs182074216 1390 dbSNP
rs1420887508 1392 dbSNP
rs1047690645 1402 dbSNP
rs1425741376 1402 dbSNP
rs993716436 1402 dbSNP
rs780956341 1405 dbSNP
rs546534789 1406 dbSNP
rs1404902045 1414 dbSNP
rs1309101408 1415 dbSNP
rs528133623 1415 dbSNP
rs1037870047 1421 dbSNP
rs553896490 1421 dbSNP
rs1212622779 1425 dbSNP
rs1305917292 1426 dbSNP
rs750535764 1427 dbSNP
rs1321916125 1435 dbSNP
rs560762299 1435 dbSNP
rs757107755 1436 dbSNP
rs910990741 1436 dbSNP
rs1205787590 1437 dbSNP
rs1010286514 1444 dbSNP
rs1334718152 1448 dbSNP
rs751338914 1449 dbSNP
rs1175533295 1451 dbSNP
rs1407576885 1453 dbSNP
rs891912919 1456 dbSNP
rs1445500200 1463 dbSNP
rs1054380133 1471 dbSNP
rs1165647941 1474 dbSNP
rs1302505634 1477 dbSNP
rs1000626497 1481 dbSNP
rs1171805047 1482 dbSNP
rs903754317 1484 dbSNP
rs765279358 1486 dbSNP
rs1392678387 1496 dbSNP
rs1040038541 1498 dbSNP
rs542566615 1500 dbSNP
rs1382824805 1502 dbSNP
rs1454260236 1514 dbSNP
rs1312377310 1523 dbSNP
rs1458134780 1529 dbSNP
rs1391106175 1530 dbSNP
rs922277676 1533 dbSNP
rs1305662338 1534 dbSNP
rs575068606 1537 dbSNP
rs1232391932 1542 dbSNP
rs966620756 1546 dbSNP
rs1157112214 1550 dbSNP
rs1185734750 1555 dbSNP
rs1469642346 1559 dbSNP
rs1241519125 1563 dbSNP
rs142764054 1563 dbSNP
rs73075357 1566 dbSNP
rs1422046132 1569 dbSNP
rs1408737421 1570 dbSNP
rs185104866 1574 dbSNP
rs572150310 1575 dbSNP
rs577218769 1577 dbSNP
rs1034204547 1580 dbSNP
rs1334350486 1585 dbSNP
rs1381557333 1585 dbSNP
rs1003642337 1588 dbSNP
rs1271743205 1590 dbSNP
rs370630294 1591 dbSNP
rs549688037 1591 dbSNP
rs1026273799 1593 dbSNP
rs1279155780 1604 dbSNP
rs764286422 1609 dbSNP
rs1324436124 1611 dbSNP
rs1212805046 1614 dbSNP
rs1261548487 1615 dbSNP
rs929710120 1620 dbSNP
rs993454240 1624 dbSNP
rs899458581 1634 dbSNP
rs538228114 1635 dbSNP
rs1340623634 1636 dbSNP
rs180712662 1636 dbSNP
rs572930839 1640 dbSNP
rs1203018702 1651 dbSNP
rs114700625 1656 dbSNP
rs1400950765 1663 dbSNP
rs1319812305 1664 dbSNP
rs1343216515 1665 dbSNP
rs1429755253 1679 dbSNP
rs1256099620 1696 dbSNP
rs1283906116 1696 dbSNP
rs759422988 1697 dbSNP
rs536108082 1701 dbSNP
rs75940382 1703 dbSNP
rs1286608618 1707 dbSNP
rs945018706 1707 dbSNP
rs1215488476 1713 dbSNP
rs1436263243 1716 dbSNP
rs971557617 1725 dbSNP
rs915192751 1730 dbSNP
rs557072177 1731 dbSNP
rs1400371005 1732 dbSNP
rs552629379 1733 dbSNP
rs1160005402 1735 dbSNP
rs926483944 1737 dbSNP
rs1174366371 1746 dbSNP
rs1024422985 1756 dbSNP
rs1303572032 1759 dbSNP
rs1367157879 1760 dbSNP
rs144683734 1772 dbSNP
rs1302397121 1776 dbSNP
rs982311757 1779 dbSNP
rs1192994621 1785 dbSNP
rs1449785462 1787 dbSNP
rs1281538160 1791 dbSNP
rs571310555 1799 dbSNP
rs777872236 1800 dbSNP
rs1292987186 1807 dbSNP
rs1190517105 1817 dbSNP
rs1361961613 1818 dbSNP
rs1446045384 1824 dbSNP
rs188624103 1830 dbSNP
rs1000170981 1831 dbSNP
rs1469333391 1840 dbSNP
rs972067508 1840 dbSNP
rs900520094 1841 dbSNP
rs1386869411 1842 dbSNP
rs1039583129 1844 dbSNP
rs1162919606 1845 dbSNP
rs1397096052 1853 dbSNP
rs1007227184 1858 dbSNP
rs891081512 1859 dbSNP
rs1331009206 1867 dbSNP
rs528070280 1876 dbSNP
rs1050898152 1880 dbSNP
rs1315915347 1883 dbSNP
rs1331828452 1883 dbSNP
rs1280177288 1885 dbSNP
rs1362122082 1885 dbSNP
rs1265414330 1886 dbSNP
rs929824600 1887 dbSNP
rs1007821599 1892 dbSNP
rs1270289370 1896 dbSNP
rs775537665 1896 dbSNP
rs918313273 1900 dbSNP
rs140941341 1911 dbSNP
rs1229798027 1913 dbSNP
rs998090706 1915 dbSNP
rs1341856141 1917 dbSNP
rs1373388888 1920 dbSNP
rs1166023925 1922 dbSNP
rs1463479273 1922 dbSNP
rs1038547820 1923 dbSNP
rs1465164491 1932 dbSNP
rs1337706678 1934 dbSNP
rs1430520793 1937 dbSNP
rs764397070 1954 dbSNP
rs373101809 1959 dbSNP
rs544647241 1959 dbSNP
rs1336471239 1960 dbSNP
rs1312489827 1967 dbSNP
rs1327334039 1968 dbSNP
rs1268934536 1971 dbSNP
rs1412997994 1971 dbSNP
rs1316825821 1976 dbSNP
rs1203729483 1983 dbSNP
rs1264658232 1984 dbSNP
rs1459724740 1985 dbSNP
rs940997996 1986 dbSNP
rs926962412 1987 dbSNP
rs979829468 1990 dbSNP
rs1172863809 1992 dbSNP
rs549013181 1994 dbSNP
rs1191020050 1996 dbSNP
rs972051928 2007 dbSNP
rs917520509 2009 dbSNP
rs988924664 2015 dbSNP
rs772801836 2025 dbSNP
rs1468444284 2026 dbSNP
rs1302412298 2028 dbSNP
rs183893860 2030 dbSNP
rs879536788 2031 dbSNP
rs981998615 2032 dbSNP
rs1340420753 2033 dbSNP
rs1224616385 2040 dbSNP
rs1284669446 2044 dbSNP
rs1165910143 2054 dbSNP
rs774857678 2054 dbSNP
rs1018014854 2057 dbSNP
rs1237684797 2064 dbSNP
rs1486757770 2064 dbSNP
rs1189646802 2065 dbSNP
rs949208255 2071 dbSNP
rs1431548376 2074 dbSNP
rs1431510704 2078 dbSNP
rs1484368220 2078 dbSNP
rs563040904 2080 dbSNP
rs544785594 2081 dbSNP
rs891035621 2084 dbSNP
rs1360231509 2088 dbSNP
rs1406100704 2090 dbSNP
rs1305416493 2091 dbSNP
rs1343172624 2093 dbSNP
rs1385719385 2095 dbSNP
rs1029599149 2101 dbSNP
rs1318314234 2101 dbSNP
rs3182941 2103 dbSNP
rs993979580 2105 dbSNP
rs1458346694 2109 dbSNP
rs1440034448 2111 dbSNP
rs1369169960 2116 dbSNP
rs963401027 2117 dbSNP
rs1271549905 2119 dbSNP
rs1214344857 2120 dbSNP
rs896994784 2125 dbSNP
rs1038091424 2140 dbSNP
rs1266672536 2150 dbSNP
rs1295288572 2167 dbSNP
rs1231691732 2171 dbSNP
rs182116025 2190 dbSNP
rs544991264 2194 dbSNP
rs1411790751 2208 dbSNP
rs1380077894 2210 dbSNP
rs1425679620 2212 dbSNP
rs1044432330 2215 dbSNP
rs1043364 2224 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 221895.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ccGUAUGUUAGAC-UGUACaua 5'
            ::||| ||:|| |||||   
Target 5' uuUGUAC-AUUUGCACAUG--- 3'
3 - 20
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000283928.5 | 3UTR | AUUUUGUACAUUUGCACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4666a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057266 FAM35A family with sequence similarity 35 member A 2 2
MIRT059969 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT079031 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT079631 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT086974 LANCL1 LanC like 1 2 2
MIRT091804 GOLGA4 golgin A4 2 2
MIRT229501 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT255972 WDR17 WD repeat domain 17 2 2
MIRT262975 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT264774 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT334169 CCND1 cyclin D1 2 6
MIRT345868 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT452477 DDX4 DEAD-box helicase 4 2 2
MIRT455764 TSPAN6 tetraspanin 6 2 4
MIRT461627 DCAF15 DDB1 and CUL4 associated factor 15 2 4
MIRT465169 TRPV2 transient receptor potential cation channel subfamily V member 2 2 4
MIRT468950 RPS14 ribosomal protein S14 2 6
MIRT483236 C2orf72 chromosome 2 open reading frame 72 2 8
MIRT498544 TMEM30B transmembrane protein 30B 2 2
MIRT500633 TXNIP thioredoxin interacting protein 2 4
MIRT504113 GPR158 G protein-coupled receptor 158 2 2
MIRT504428 ZNF85 zinc finger protein 85 2 6
MIRT505036 ZNF451 zinc finger protein 451 2 2
MIRT506526 MRPL17 mitochondrial ribosomal protein L17 2 6
MIRT508773 GSG1 germ cell associated 1 2 2
MIRT517297 ELF4 E74 like ETS transcription factor 4 2 6
MIRT519353 OBFC1 STN1, CST complex subunit 2 4
MIRT523891 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 6
MIRT527509 ZNF134 zinc finger protein 134 2 2
MIRT531218 IFNGR2 interferon gamma receptor 2 2 2
MIRT535957 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT537229 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 4
MIRT537337 FKBP5 FK506 binding protein 5 2 2
MIRT539125 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539910 ISPD isoprenoid synthase domain containing 2 2
MIRT541527 MGAT4C MGAT4 family member C 2 2
MIRT546119 USP25 ubiquitin specific peptidase 25 2 2
MIRT548846 CERCAM cerebral endothelial cell adhesion molecule 2 2
MIRT549892 LINC00955 long intergenic non-protein coding RNA 955 2 2
MIRT549898 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 2 2
MIRT550763 ENOX2 ecto-NOX disulfide-thiol exchanger 2 2 4
MIRT553200 UBE2A ubiquitin conjugating enzyme E2 A 2 2
MIRT553970 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT554092 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555208 PROX1 prospero homeobox 1 2 4
MIRT555834 PAX5 paired box 5 2 4
MIRT556865 JAZF1 JAZF zinc finger 1 2 2
MIRT558594 CREBL2 cAMP responsive element binding protein like 2 2 2
MIRT559690 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT563312 ORC4 origin recognition complex subunit 4 2 2
MIRT563585 FAM229B family with sequence similarity 229 member B 2 2
MIRT563853 ALYREF Aly/REF export factor 2 4
MIRT565146 TUBB2A tubulin beta 2A class IIa 2 2
MIRT565769 SEPHS1 selenophosphate synthetase 1 2 2
MIRT568317 BACH1 BTB domain and CNC homolog 1 2 2
MIRT575387 Unc5b unc-5 netrin receptor B 2 4
MIRT607728 BDH1 3-hydroxybutyrate dehydrogenase 1 2 8
MIRT612691 PLXNA4 plexin A4 2 4
MIRT615916 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT629792 P2RY1 purinergic receptor P2Y1 2 2
MIRT632119 FKBP9 FK506 binding protein 9 2 2
MIRT645554 ZDHHC15 zinc finger DHHC-type containing 15 2 4
MIRT651479 WWC3 WWC family member 3 2 2
MIRT654138 RPH3A rabphilin 3A 2 6
MIRT655191 PHAX phosphorylated adaptor for RNA export 2 2
MIRT665543 UNC5B unc-5 netrin receptor B 2 5
MIRT668057 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT678978 CERS4 ceramide synthase 4 2 4
MIRT679124 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 2
MIRT686776 AZF1 azoospermia factor 1 2 2
MIRT687144 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT691453 C21orf58 chromosome 21 open reading frame 58 2 2
MIRT691469 FAM98B family with sequence similarity 98 member B 2 2
MIRT697031 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT698401 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT702056 RNMT RNA guanine-7 methyltransferase 2 2
MIRT705903 ADAM9 ADAM metallopeptidase domain 9 2 2
MIRT707491 MMADHC methylmalonic aciduria and homocystinuria, cblD type 2 2
MIRT708080 KLHL23 kelch like family member 23 2 2
MIRT709738 TRIM27 tripartite motif containing 27 2 2
MIRT710056 RWDD2A RWD domain containing 2A 2 2
MIRT710226 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT712043 STYK1 serine/threonine/tyrosine kinase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4666a Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)

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