pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HOXB3   
Synonyms HOX2, HOX2G, Hox-2.7
Description homeobox B3
Transcript NM_002146   
Expression
Putative miRNA Targets on HOXB3
3'UTR of HOXB3
(miRNA target sites are highlighted)
>HOXB3|NM_002146|3'UTR
   1 TGGGAAAGGGCGAACGAGGATTAGGGGATGGGGAGGAAGAGAGAGACTGTGGAGCTCTGGGGGGCAACCTGGAGGTCTGA
  81 AAAGAGGAGCCAGAGAAGGTGGTACCCAGGCTTCCTGGTCAGAACCGGCCTGGAGCTCCTTCCCTTCCCCCTGGCCTGAG
 161 AGGTTGCTTTTAAGTCTTCCACCCCTTGTTCCATCTGCCTGCCAACCCATCGGAAAGGAATCCACATCATATTGGAGATG
 241 ACCCCATCAACCCCAGGGCTCCAGCACTACCAAGTTGGAATTCCACGCCCGGGAGTGGGGTAGAGGAAGACGAGACAGGA
 321 CGAGGCAGAAAAGCACATTTTAAAAACCAGACAAGATGGCTAGGCCATCACCAACCAACGGACTTACCTTACATCTTTGT
 401 AGGTAATTCCCCCCAAATCTTGATTTTTTTTTTTCCTCAATTATCCTTTAAAAAATAAGAAAACACATTTCAAACCCAAA
 481 AGGCACAAAACACGTTCCCTTCCAACTTTCCCAAAACCTCAAATTTGTTCCCATTTGAGGTTTATTGAGGTACACTTCTA
 561 GCCCCCGGTTTTTCTGCTCTAGAACATTCATATCTATACATCCCACCCCCATCAATTACAGTTTTTAGAGGGCTCAGGGA
 641 TGGTGAGAGATCCTGAAAGAGCTGCCTATATTATAAATTATATACATTTTTTTTTAAGGAAAAGTGTGGAGGCTAGGGCA
 721 GGCAGGTTGTTAGGACTGAAGGTTTGCCCATTCTGCTGCCTCCATCTCAGCTCCAGCTCCATCCCCCTCTCCACAGAAAG
 801 CAGTTGGTGACACGAGGTTCTATACTTTTCTTCTGTTGCTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAAC
 881 TGTCCCAGGCAGGGGCTGGGCAGGGCCTGTGTGCCTTGCTCAGCCTCCTGACAGGACACTTTTGTTGCACTTAGAATTTA
 961 CATTTTAATGGATGTAAAAACAACTGTGAGAGATGTCTGGGCCTGCAGAAGTCCAGCATTGCTCAAAAAAGCGTGTGTTC
1041 TAGTGAACATTTTCATATATATTTATTGGTTATAGCCTGTTAAAATATTTTCTTTTTTGTATTATTTATCCCCCTACATT
1121 ATGTATTTATATGAGGGAAAAAAAGGAAAAAATTGTACTTTTTTAGTATTTACCTGTTACAAAGGACATTGTGTTTCCTG
1201 TCATGTAAAACCAGCTATTTTAGTTACTATTGTACTCTAGAAAAGAGCTGTAGATTTATGTTAAACTCGTACTTACGAAC
1281 AATTGTAATTAGTTCTAAAAGGCATGAACTCAGCTCCTAATCGTCACTGTATAGTCCTGAATTTGTAGAACTAGAGTTAA
1361 TTCCCTCTTGGAACTTTCTTTGTTCTTCAGTAGTTACTTTTTTCCTTACCTAAAAGGGTTGTCTGTCAAACAATTCTTGA
1441 ATAAACTTTCTGTTATCAATTTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCAGGGUGGGGGUGAGGACa 5'
            | |:::|:|   |||||| 
Target 5' gtGCCTTGCTCAGCCTCCTGa 3'
911 - 931 123.00 -17.00
2
miRNA  3' uacAG-GGUGG-GGGUGAGGACa 5'
             || :|||: : :| ||||| 
Target 5' taaTCGTCACTGTATAGTCCTGa 3'
1318 - 1340 118.00 -12.80
3
miRNA  3' uacAGGGUGGGGGUGAGGACa 5'
             |:|| |||| | ||:|| 
Target 5' taaTTCC-CCCCAAATCTTGa 3'
404 - 423 117.00 -17.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30179564 11 COSMIC
COSN30475441 16 COSMIC
COSN30491505 19 COSMIC
COSN7437034 19 COSMIC
COSN9669966 28 COSMIC
COSN13728812 31 COSMIC
COSN18715931 36 COSMIC
COSN30160413 43 COSMIC
COSN30477647 45 COSMIC
COSN31541568 58 COSMIC
COSN30461174 86 COSMIC
COSN30170136 98 COSMIC
COSN30515095 111 COSMIC
COSN20114097 424 COSMIC
COSN14630884 455 COSMIC
COSN26635835 589 COSMIC
COSN26564109 599 COSMIC
COSN28956536 615 COSMIC
COSN20114095 686 COSMIC
COSN18723787 879 COSMIC
COSN20114089 879 COSMIC
COSN31601274 887 COSMIC
COSN32056845 894 COSMIC
COSN8603311 898 COSMIC
COSN31562799 932 COSMIC
COSN31545759 1024 COSMIC
COSN31550131 1101 COSMIC
COSN19536903 1112 COSMIC
COSN31532054 1114 COSMIC
COSN31483383 1155 COSMIC
COSN30161894 1157 COSMIC
COSN21140673 1245 COSMIC
COSN31522093 1335 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746944609 1 dbSNP
rs1206525910 4 dbSNP
rs1235699910 5 dbSNP
rs1472156950 7 dbSNP
rs1056188773 8 dbSNP
rs375556391 10 dbSNP
rs565883037 11 dbSNP
rs1243361829 12 dbSNP
rs758376060 13 dbSNP
rs765540492 15 dbSNP
rs1210762337 18 dbSNP
rs1390378778 18 dbSNP
rs1393687893 22 dbSNP
rs1489278662 26 dbSNP
rs768944960 28 dbSNP
rs1335283439 30 dbSNP
rs370619296 31 dbSNP
rs754187524 32 dbSNP
rs766683458 33 dbSNP
rs1443015898 34 dbSNP
rs371125954 36 dbSNP
rs750871349 39 dbSNP
rs768137786 40 dbSNP
rs1227998281 41 dbSNP
rs1248466995 42 dbSNP
rs762436735 43 dbSNP
rs774996867 45 dbSNP
rs769371734 46 dbSNP
rs1323947743 47 dbSNP
rs759220924 47 dbSNP
rs373134555 48 dbSNP
rs1219908721 49 dbSNP
rs1361317902 50 dbSNP
rs746864099 51 dbSNP
rs1204531836 52 dbSNP
rs941273345 52 dbSNP
rs1007692405 54 dbSNP
rs1022565080 55 dbSNP
rs776869808 55 dbSNP
rs909768134 58 dbSNP
rs554812390 59 dbSNP
rs1481594498 60 dbSNP
rs983025763 61 dbSNP
rs1402036534 64 dbSNP
rs1011546984 68 dbSNP
rs771093471 69 dbSNP
rs929803193 71 dbSNP
rs1352813060 72 dbSNP
rs1052416048 73 dbSNP
rs939455809 74 dbSNP
rs1218253121 75 dbSNP
rs1347647920 76 dbSNP
rs142560479 78 dbSNP
rs1045138094 85 dbSNP
rs1370565696 87 dbSNP
rs1344128971 94 dbSNP
rs760531631 99 dbSNP
rs1295224969 101 dbSNP
rs1215075642 103 dbSNP
rs1481769265 104 dbSNP
rs546829890 104 dbSNP
rs139598264 106 dbSNP
rs1269079495 110 dbSNP
rs563553916 113 dbSNP
rs541093093 114 dbSNP
rs929866500 116 dbSNP
rs185335892 117 dbSNP
rs1355490518 118 dbSNP
rs561419370 125 dbSNP
rs979043590 126 dbSNP
rs1303851877 127 dbSNP
rs756683710 127 dbSNP
rs1463759344 128 dbSNP
rs1330280752 132 dbSNP
rs1227940789 133 dbSNP
rs1020510174 138 dbSNP
rs1010831791 139 dbSNP
rs1339986234 142 dbSNP
rs1226934920 143 dbSNP
rs1017983004 144 dbSNP
rs1165068325 147 dbSNP
rs1361042316 149 dbSNP
rs1207676122 150 dbSNP
rs985592149 151 dbSNP
rs953585511 152 dbSNP
rs1195807070 155 dbSNP
rs541690703 160 dbSNP
rs1422726986 162 dbSNP
rs960219799 163 dbSNP
rs1022873769 166 dbSNP
rs1246666847 167 dbSNP
rs1035205721 173 dbSNP
rs1003244570 176 dbSNP
rs1164852905 180 dbSNP
rs1387149658 182 dbSNP
rs1411613628 184 dbSNP
rs572159653 185 dbSNP
rs1178894629 192 dbSNP
rs892707707 198 dbSNP
rs748021615 202 dbSNP
rs1162862858 207 dbSNP
rs1385990113 208 dbSNP
rs1031041837 211 dbSNP
rs904901725 212 dbSNP
rs1044717431 214 dbSNP
rs565004609 226 dbSNP
rs182653717 229 dbSNP
rs1232121934 232 dbSNP
rs1196474142 233 dbSNP
rs1242019738 246 dbSNP
rs1264444559 246 dbSNP
rs1003551985 248 dbSNP
rs1207196695 251 dbSNP
rs1266622123 258 dbSNP
rs906492056 261 dbSNP
rs1184733716 269 dbSNP
rs1005137613 270 dbSNP
rs1456647291 273 dbSNP
rs948103141 274 dbSNP
rs1214469640 275 dbSNP
rs1321182021 277 dbSNP
rs1310588295 279 dbSNP
rs1225975944 284 dbSNP
rs1374633766 285 dbSNP
rs1456544448 290 dbSNP
rs1309010219 291 dbSNP
rs888382888 293 dbSNP
rs1404294402 295 dbSNP
rs1048703305 297 dbSNP
rs929945544 298 dbSNP
rs762437378 299 dbSNP
rs4793578 302 dbSNP
rs1286124911 303 dbSNP
rs1040903263 311 dbSNP
rs943725862 312 dbSNP
rs575967101 315 dbSNP
rs147380384 324 dbSNP
rs1200452008 333 dbSNP
rs536508065 333 dbSNP
rs1251316959 335 dbSNP
rs768247725 340 dbSNP
rs1421005795 341 dbSNP
rs1041567198 347 dbSNP
rs573857895 349 dbSNP
rs1176902747 357 dbSNP
rs1360756485 359 dbSNP
rs1464480300 365 dbSNP
rs763393263 369 dbSNP
rs990046275 378 dbSNP
rs1401241165 387 dbSNP
rs1411172691 391 dbSNP
rs942755752 392 dbSNP
rs1379588960 393 dbSNP
rs911276305 393 dbSNP
rs1176587071 399 dbSNP
rs956824244 403 dbSNP
rs765976002 413 dbSNP
rs968675738 416 dbSNP
rs913501207 419 dbSNP
rs1233130289 426 dbSNP
rs1003771316 429 dbSNP
rs970729564 433 dbSNP
rs770055974 434 dbSNP
rs1201952146 435 dbSNP
rs1267265787 435 dbSNP
rs398030980 435 dbSNP
rs398079026 435 dbSNP
rs60329254 435 dbSNP
rs74432128 435 dbSNP
rs1488239525 436 dbSNP
rs1263786652 438 dbSNP
rs1217977710 439 dbSNP
rs1318095280 440 dbSNP
rs1431278598 445 dbSNP
rs1175235470 448 dbSNP
rs989056251 455 dbSNP
rs1373609112 456 dbSNP
rs553548417 464 dbSNP
rs888522383 468 dbSNP
rs1369486884 478 dbSNP
rs1405162296 485 dbSNP
rs1294973171 491 dbSNP
rs1365884917 493 dbSNP
rs1350526318 509 dbSNP
rs1048442490 510 dbSNP
rs1035854087 513 dbSNP
rs1226185176 518 dbSNP
rs1385906967 522 dbSNP
rs1001623116 525 dbSNP
rs576561600 527 dbSNP
rs969112316 529 dbSNP
rs1245243747 545 dbSNP
rs1487362158 548 dbSNP
rs1190434520 551 dbSNP
rs1451263190 555 dbSNP
rs1166702643 556 dbSNP
rs1388987502 559 dbSNP
rs1023318527 562 dbSNP
rs1430780576 563 dbSNP
rs1424786110 571 dbSNP
rs1166416629 576 dbSNP
rs1347779681 585 dbSNP
rs1040954044 589 dbSNP
rs1289820426 590 dbSNP
rs190411019 591 dbSNP
rs186023892 596 dbSNP
rs1433513072 599 dbSNP
rs910911899 602 dbSNP
rs1156756041 605 dbSNP
rs888106475 620 dbSNP
rs1287936429 624 dbSNP
rs1436444212 630 dbSNP
rs1321369600 638 dbSNP
rs1047448607 640 dbSNP
rs1175037264 670 dbSNP
rs552224861 679 dbSNP
rs1432839171 680 dbSNP
rs1466124255 681 dbSNP
rs1265502853 683 dbSNP
rs770958418 683 dbSNP
rs1247373665 686 dbSNP
rs182006296 686 dbSNP
rs1040892959 695 dbSNP
rs202201121 696 dbSNP
rs914313948 696 dbSNP
rs956875465 699 dbSNP
rs942486090 705 dbSNP
rs911320522 706 dbSNP
rs1320425198 719 dbSNP
rs538772173 722 dbSNP
rs879637093 725 dbSNP
rs947390882 726 dbSNP
rs1282507805 728 dbSNP
rs1378624051 733 dbSNP
rs377377512 743 dbSNP
rs569991912 750 dbSNP
rs1224517916 753 dbSNP
rs142780206 755 dbSNP
rs1330892426 758 dbSNP
rs960327057 763 dbSNP
rs928840504 771 dbSNP
rs11651053 772 dbSNP
rs952706916 774 dbSNP
rs1027505207 779 dbSNP
rs994183415 786 dbSNP
rs190195286 799 dbSNP
rs547991813 805 dbSNP
rs1023370667 808 dbSNP
rs1413757756 812 dbSNP
rs527914344 813 dbSNP
rs778799686 814 dbSNP
rs1310114986 817 dbSNP
rs952527737 818 dbSNP
rs138850198 820 dbSNP
rs371785759 824 dbSNP
rs1416653342 833 dbSNP
rs1008139613 834 dbSNP
rs1358613780 835 dbSNP
rs1339290156 841 dbSNP
rs779871781 851 dbSNP
rs1310030176 856 dbSNP
rs1348873626 861 dbSNP
rs889693134 864 dbSNP
rs994206000 865 dbSNP
rs901094818 868 dbSNP
rs1287484353 875 dbSNP
rs1345520604 876 dbSNP
rs201949561 878 dbSNP
rs773359604 882 dbSNP
rs386386204 883 dbSNP
rs55687167 884 dbSNP
rs200320043 885 dbSNP
rs397778262 885 dbSNP
rs75571143 885 dbSNP
rs1253458846 887 dbSNP
rs947044134 888 dbSNP
rs1019512409 889 dbSNP
rs1181098649 895 dbSNP
rs367815767 900 dbSNP
rs1247645814 901 dbSNP
rs1479230347 902 dbSNP
rs1171293098 910 dbSNP
rs1302093451 924 dbSNP
rs1464355471 925 dbSNP
rs1170569257 932 dbSNP
rs892779035 934 dbSNP
rs1376199186 942 dbSNP
rs1053290168 945 dbSNP
rs1006754928 948 dbSNP
rs889603000 954 dbSNP
rs1478235110 959 dbSNP
rs545056642 962 dbSNP
rs924127486 968 dbSNP
rs1423049426 971 dbSNP
rs982271018 985 dbSNP
rs1228412588 986 dbSNP
rs1276155889 987 dbSNP
rs1057111 990 dbSNP
rs1339533134 995 dbSNP
rs949499238 997 dbSNP
rs916823059 998 dbSNP
rs991065958 999 dbSNP
rs1197215276 1000 dbSNP
rs1043201006 1001 dbSNP
rs1246564580 1005 dbSNP
rs952836057 1010 dbSNP
rs1191114201 1011 dbSNP
rs1388376978 1016 dbSNP
rs1191539808 1019 dbSNP
rs1429233285 1031 dbSNP
rs200675771 1032 dbSNP
rs891839663 1033 dbSNP
rs1019439747 1044 dbSNP
rs1330374225 1045 dbSNP
rs555160875 1055 dbSNP
rs1299802677 1058 dbSNP
rs542306699 1059 dbSNP
rs1253386078 1063 dbSNP
rs879117267 1069 dbSNP
rs1028676102 1091 dbSNP
rs938657725 1092 dbSNP
rs1358029464 1095 dbSNP
rs928917233 1097 dbSNP
rs1289596838 1100 dbSNP
rs1465671052 1103 dbSNP
rs1211090995 1107 dbSNP
rs980310758 1112 dbSNP
rs187506341 1115 dbSNP
rs1448890510 1116 dbSNP
rs1188353362 1122 dbSNP
rs777990165 1127 dbSNP
rs879245674 1133 dbSNP
rs892820027 1134 dbSNP
rs1471932362 1135 dbSNP
rs909385277 1137 dbSNP
rs115689527 1138 dbSNP
rs1162951066 1138 dbSNP
rs1322401205 1145 dbSNP
rs952505233 1145 dbSNP
rs1025778055 1146 dbSNP
rs972436961 1147 dbSNP
rs1234564997 1148 dbSNP
rs1045470476 1153 dbSNP
rs906961907 1153 dbSNP
rs1311908788 1155 dbSNP
rs755491330 1160 dbSNP
rs1398375644 1165 dbSNP
rs367710460 1165 dbSNP
rs1242130796 1167 dbSNP
rs1283277050 1172 dbSNP
rs1330192705 1180 dbSNP
rs1210996818 1182 dbSNP
rs35764080 1186 dbSNP
rs749998188 1188 dbSNP
rs965402641 1189 dbSNP
rs1464845364 1195 dbSNP
rs1298495671 1210 dbSNP
rs72829847 1212 dbSNP
rs1399808592 1219 dbSNP
rs1168673151 1220 dbSNP
rs1006807171 1221 dbSNP
rs756800313 1229 dbSNP
rs1476224795 1230 dbSNP
rs931563731 1231 dbSNP
rs144105716 1242 dbSNP
rs1412998345 1250 dbSNP
rs1187474168 1253 dbSNP
rs1472760449 1254 dbSNP
rs1161105620 1257 dbSNP
rs1409562492 1260 dbSNP
rs557678051 1266 dbSNP
rs1452949466 1269 dbSNP
rs1303405350 1271 dbSNP
rs1422512431 1276 dbSNP
rs1253138470 1277 dbSNP
rs972701472 1282 dbSNP
rs1179596666 1285 dbSNP
rs1021475221 1289 dbSNP
rs1350742598 1292 dbSNP
rs1011785381 1294 dbSNP
rs1286844435 1295 dbSNP
rs1316759212 1302 dbSNP
rs752164102 1304 dbSNP
rs180731656 1323 dbSNP
rs1258334720 1328 dbSNP
rs1019658654 1330 dbSNP
rs1199952370 1332 dbSNP
rs1252723134 1363 dbSNP
rs938725852 1366 dbSNP
rs542513000 1376 dbSNP
rs1180361308 1378 dbSNP
rs1249320909 1396 dbSNP
rs549463449 1399 dbSNP
rs1044667145 1401 dbSNP
rs1176651575 1404 dbSNP
rs1379321065 1406 dbSNP
rs1464055970 1417 dbSNP
rs1172480788 1419 dbSNP
rs954026775 1423 dbSNP
rs1411264304 1428 dbSNP
rs1305853364 1436 dbSNP
rs752908460 1452 dbSNP
rs1264283199 1456 dbSNP
rs531326544 1461 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3213.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000470495.1 | 3UTR | CCUUGCUCAGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000470495.1 | 3UTR | ACAGGACACUUUUGUUGCACUUAGAAUUUACAUUUUAAUGGAUGUAAAAACAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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