pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FAM222B   
Synonyms C17orf63
Description family with sequence similarity 222 member B
Transcript NM_001077498   
Other Transcripts NM_018182   
Expression
Putative miRNA Targets on FAM222B
3'UTR of FAM222B
(miRNA target sites are highlighted)
>FAM222B|NM_001077498|3'UTR
   1 GTAGCCCTGCTGCCCTCCACGTGCAACACATCATACATCACCCTCCTAGGTTTAGTCTTTTAAGTAACTGGATAGTTTCA
  81 AAGTTTCACTGCTCCAGTGTGATCATTCTTAGATGTCTAAGAAAGGGAATTTGGTGGGATCTAAGTGGGGACAGAAGGGG
 161 TCCTCTCGTCCTCCCCTCCAGCAACTTTTGGTTTTATGTTAGAACCTAACCCTAAGCCCAGGCTTTTCTCTCCACTGACT
 241 GCCTGTCAGCTAGTCTCTCCACCTTGGCCATTTCCAGCCAGCTCCCACCCATCTTTTCTTGAATCTCTTCCTGTTTCCCT
 321 TAGGACGACTGAGGTGTGGGCTGACGGAATGCCCTAGTTGAGGTAGTATAGGTGCTCAGGCCCCTAATCCAGACCTCTAC
 401 CTGTTGCTACCCCCCTTCCCCTCCCTCCAGGACTAAGAAGCAAGATTTCCCAGGTGCTCTGAAAGCTAATTACTTACTCA
 481 TCGAAGGATCTCAAATCAAAGCTGACCCAGTCTTCATATCCTTCAAGTTCCTTTCCATTCCTCAAGGCTTTGTTTTGTGT
 561 CTATATTGATCCCACAGCCACTGCACTTGCCCTTGCCACACTTGATCTCAAGGGCATCTTGGAAGTATTTGACCATTTCT
 641 TGAGATATGGGGGGAAAAAGTCTTTGTATTGGCATCTTGGTTCCAGACTCCCCTTTCCAAACCTAGAAAAATACAGTGAC
 721 CTTTGAGCATACCCAAGATCCCTTTCTCACTGTTGCCTGTCCCCTAACTCACCTCCCCACAGCCCCTATCCTTTCCCCCT
 801 CAACAAAAACAAAATCTACCTTACTTGAGGAATTAGGTAGGTAAGGAATGATCACATTGGAGTTTGGGATTAAAAACACC
 881 AAAAAAAAAAAAATGCATTTGGTTCTCTCTACACTGGCTAAGAATATTGCTCTACACTGTAAGTTTTAAACGTTACGTTT
 961 CTGTATGAATGTAGTGTGGGTTTGAGTAGCATTGTGTGTGAGTGGCCCCACAGGTACATTCACCCTCTAGTGCAGCCCCT
1041 CAGTTTAATGAAGGAAAAAAAAACAAACACAAAGCCTTAAGCTCTTTGAGTACTTCCTTTACCAAATGAGCATGGTTCTA
1121 ACACCTGGAGCTGGGCCTACATTGGAAACAAGCCCCTCCTGCCCTCTGTCCATTCTTAGAGCATACCTTCATCCACTCCA
1201 TGCTCAGCACGTCTCATCCCAAGCGACAATTAGTTGGCTAGAAACACTTTTCTGTAATTTTAAACTTAGACTGTTTTGTT
1281 ACAAATTTTTGCACCATTCTGTTAAAGATGCAGAATTGGGCTTTTTTATTTTTTACAGATGAAATAAGCCCTTACCTTTC
1361 CTCTTGTCTCTGGGGAATGTCAGCTGATGGTTCTTATTTAAGGTTTTGCATTTTGTTCACTATCCACTACTGTTCGTTAG
1441 CCAGAAATTCTCTAGTGATCTGAAGCAATGTGACTGAAGACCAGTTTTAAGTTATGTGTTGGCAAGTTGCCTTATATTTA
1521 AAAGGAAAAAGAAAAAAAAAAAAGCCTGATTGTGTTATGCCAAATGATAGCAACATGAAGTCCTAATTTATTGTTCCCAA
1601 TTGTTTTCCTGCCGTCTGTGAACACTGGTACCTCCCTGTCCTGATCCCCCAGGAGCACCTGTAGCTTCTGACTCAATGCC
1681 TTCTCCGAAGGTGTTGGCCGCCATCTCACCCAGGGCCCTCTTCCAGTTCCTGCTTTTCTGAGTCAGATTTAAAGAGCACC
1761 ACTGTCTTCCCCCTACCCCTTGCTTGATCTCCAAAGCAGATATTCTTGCTGTATTTTTTTTTCCTCCCCAATACCTCTCC
1841 CTGAAAGGTGAGCTGCTATTTTAGGAAACTGGACCAGACACCAACTTGGGGGCTTTAAGTCAAACAACCTCAAACCCATC
1921 TCTTCCTGTGTAGGGGTGCAAGCCTCTGAAGCTCTCACTCCCACCCTTAGTCTGCATGGAAAATGTACTGTGATCCCCCT
2001 GCCCCCAACTGCCCTCGCCTTTGGTGTGAGATGTTCCTTCTTTCGGAGTTCAGCCTGAGTCCCTCTCCCCTCTGCCAGCC
2081 AACCCCCAGCCAGCAATAAGGGTCCAAGCCAGGGCCTCCTCTCCACACTCCCTGTCTCCATCCTACACTACCCTAGGGAA
2161 TACCTGGATTCCCCATTCTATCCACATACTGTAGCATTCATTCTCCATCTCTCTCACCTCACCTGTGGTGGTTTATGGGT
2241 GTGATGGGGTTTTTAAGATTATTATAAACCAGTAAAAATAAGAAAACCTCGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggCCAGGC-AUGUUU-GAGACGUc 5'
            | |::| |||||| :|:|||| 
Target 5' ctGTTTTGTTACAAATTTTTGCAc 3'
1271 - 1294 136.00 -12.90
2
miRNA  3' ggCCAGGCAUG---UUUGAGACGUc 5'
            |||:| ||:   |:::|:|||| 
Target 5' atGGTTCTTATTTAAGGTTTTGCAt 3'
1387 - 1411 132.00 -14.50
3
miRNA  3' ggcCAGGCAUGUUUGAGACGuc 5'
             |||| | :   ||||||  
Target 5' tgaGTCCCTCTCCCCTCTGCca 3'
2056 - 2077 131.00 -12.44
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30504562 5 COSMIC
COSN30584356 14 COSMIC
COSN30170001 26 COSMIC
COSN507227 43 COSMIC
COSN30496958 77 COSMIC
COSN30756320 128 COSMIC
COSN30165569 305 COSMIC
COSN26845374 564 COSMIC
COSN16401985 748 COSMIC
COSN8342848 782 COSMIC
COSN20113742 880 COSMIC
COSN1195011 881 COSMIC
COSN28653052 924 COSMIC
COSN31544574 952 COSMIC
COSN31588469 957 COSMIC
COSN29034807 1054 COSMIC
COSN31578669 1240 COSMIC
COSN31577142 1351 COSMIC
COSN20874868 1436 COSMIC
COSN26537987 1498 COSMIC
COSN18720461 1531 COSMIC
COSN27460170 1531 COSMIC
COSN27256718 1532 COSMIC
COSN24306038 1612 COSMIC
COSN31489861 1620 COSMIC
COSN31568350 1788 COSMIC
COSN19203915 1810 COSMIC
COSN29657788 1813 COSMIC
COSN31571922 1821 COSMIC
COSN26557172 1922 COSMIC
COSN28681985 2096 COSMIC
COSN31534743 2259 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777871811 4 dbSNP
rs1289440617 6 dbSNP
rs1338770989 11 dbSNP
rs758384663 13 dbSNP
rs765440260 15 dbSNP
rs1390098092 18 dbSNP
rs754772891 20 dbSNP
rs376796724 21 dbSNP
rs1401598289 25 dbSNP
rs766245749 26 dbSNP
rs1170450614 27 dbSNP
rs760617668 30 dbSNP
rs1282693743 32 dbSNP
rs772989364 35 dbSNP
rs767107002 36 dbSNP
rs200710892 37 dbSNP
rs1266074789 42 dbSNP
rs758555819 51 dbSNP
rs1278595825 53 dbSNP
rs1356380169 57 dbSNP
rs1217974982 61 dbSNP
rs757768440 68 dbSNP
rs1484896265 78 dbSNP
rs1008155343 81 dbSNP
rs1268255780 88 dbSNP
rs1453974096 89 dbSNP
rs939053067 97 dbSNP
rs1393028911 117 dbSNP
rs1234348609 118 dbSNP
rs1421346216 119 dbSNP
rs1334590412 126 dbSNP
rs886733097 128 dbSNP
rs1450940381 140 dbSNP
rs927612567 147 dbSNP
rs1046722595 151 dbSNP
rs978374028 152 dbSNP
rs146535493 153 dbSNP
rs1300878831 154 dbSNP
rs1336532769 155 dbSNP
rs1379507408 157 dbSNP
rs1022515940 158 dbSNP
rs533580394 165 dbSNP
rs559540107 167 dbSNP
rs1044814880 171 dbSNP
rs1306867992 173 dbSNP
rs1315684966 177 dbSNP
rs34717391 177 dbSNP
rs1224492608 180 dbSNP
rs1389735967 185 dbSNP
rs1396667894 197 dbSNP
rs965215718 204 dbSNP
rs1212039388 208 dbSNP
rs1240273290 212 dbSNP
rs1017718981 221 dbSNP
rs1009380840 223 dbSNP
rs1407047317 237 dbSNP
rs993001730 238 dbSNP
rs1160033912 241 dbSNP
rs1470311597 242 dbSNP
rs1460479693 253 dbSNP
rs938944499 256 dbSNP
rs924891914 257 dbSNP
rs779332804 260 dbSNP
rs1231897884 262 dbSNP
rs541169584 266 dbSNP
rs1230521244 268 dbSNP
rs1294497821 270 dbSNP
rs890494406 274 dbSNP
rs1334173225 275 dbSNP
rs1231530646 278 dbSNP
rs1260188671 283 dbSNP
rs969148201 287 dbSNP
rs1021696269 291 dbSNP
rs1179121498 303 dbSNP
rs1479571098 305 dbSNP
rs1183467947 308 dbSNP
rs975509820 312 dbSNP
rs1026278883 317 dbSNP
rs529237954 318 dbSNP
rs1474571873 322 dbSNP
rs1469415040 324 dbSNP
rs866302023 326 dbSNP
rs897097188 327 dbSNP
rs1410152393 343 dbSNP
rs1038222264 345 dbSNP
rs1008515763 346 dbSNP
rs1353105154 354 dbSNP
rs561777893 358 dbSNP
rs1313948531 362 dbSNP
rs1355414086 364 dbSNP
rs570345551 366 dbSNP
rs1280142382 368 dbSNP
rs1225759756 369 dbSNP
rs1351749969 371 dbSNP
rs764028040 371 dbSNP
rs867504918 377 dbSNP
rs1271167003 383 dbSNP
rs1305485082 390 dbSNP
rs1212796631 394 dbSNP
rs894952965 395 dbSNP
rs11657641 399 dbSNP
rs995164751 405 dbSNP
rs1185764187 410 dbSNP
rs1373262125 411 dbSNP
rs939091719 413 dbSNP
rs1440123469 416 dbSNP
rs1416950421 419 dbSNP
rs575415444 425 dbSNP
rs1174676301 431 dbSNP
rs927664920 432 dbSNP
rs1433401050 438 dbSNP
rs977755821 441 dbSNP
rs557233491 452 dbSNP
rs915511496 455 dbSNP
rs1044764697 461 dbSNP
rs753703845 469 dbSNP
rs1268599473 472 dbSNP
rs964932786 479 dbSNP
rs896280436 481 dbSNP
rs148527435 482 dbSNP
rs1406878065 483 dbSNP
rs987620985 493 dbSNP
rs954958738 507 dbSNP
rs938878470 510 dbSNP
rs1156415068 512 dbSNP
rs924871576 519 dbSNP
rs1455286192 521 dbSNP
rs1193949455 524 dbSNP
rs1394847011 528 dbSNP
rs978097071 536 dbSNP
rs1160908402 537 dbSNP
rs1395180425 540 dbSNP
rs1026330990 547 dbSNP
rs1192413724 548 dbSNP
rs1468428748 552 dbSNP
rs993472223 557 dbSNP
rs899157667 558 dbSNP
rs1016829277 561 dbSNP
rs1218470123 563 dbSNP
rs866499221 564 dbSNP
rs1283888630 566 dbSNP
rs1351336691 567 dbSNP
rs201996232 570 dbSNP
rs577814300 572 dbSNP
rs1214752376 573 dbSNP
rs200784123 574 dbSNP
rs1281523821 578 dbSNP
rs553093538 583 dbSNP
rs975457763 584 dbSNP
rs1252001863 586 dbSNP
rs1452919179 589 dbSNP
rs1364789703 590 dbSNP
rs1470047587 590 dbSNP
rs895014380 591 dbSNP
rs1462043435 595 dbSNP
rs1325394111 596 dbSNP
rs1392590164 600 dbSNP
rs1019743190 601 dbSNP
rs1055374844 610 dbSNP
rs1233585303 614 dbSNP
rs1003339870 626 dbSNP
rs906299629 634 dbSNP
rs763821531 646 dbSNP
rs1272094440 648 dbSNP
rs751588807 648 dbSNP
rs1466842144 649 dbSNP
rs1197225657 652 dbSNP
rs1025535501 655 dbSNP
rs1251685348 655 dbSNP
rs995842469 655 dbSNP
rs1368771238 660 dbSNP
rs1420658075 662 dbSNP
rs867376759 664 dbSNP
rs945054847 665 dbSNP
rs1271852621 666 dbSNP
rs115897663 668 dbSNP
rs1054083891 674 dbSNP
rs760482429 675 dbSNP
rs910764056 684 dbSNP
rs896228241 688 dbSNP
rs1396874785 689 dbSNP
rs1056641395 694 dbSNP
rs1326728105 702 dbSNP
rs567249160 703 dbSNP
rs938841586 711 dbSNP
rs1415375554 714 dbSNP
rs988061501 717 dbSNP
rs954844957 721 dbSNP
rs1436230022 722 dbSNP
rs919371361 732 dbSNP
rs1332117757 740 dbSNP
rs1229139331 746 dbSNP
rs1251541814 748 dbSNP
rs1339066873 749 dbSNP
rs79940701 756 dbSNP
rs761005715 765 dbSNP
rs1260163896 771 dbSNP
rs536962993 773 dbSNP
rs1452032730 775 dbSNP
rs914863507 776 dbSNP
rs1430399578 779 dbSNP
rs1194091297 782 dbSNP
rs1372756438 789 dbSNP
rs1461256357 791 dbSNP
rs1166461527 796 dbSNP
rs1188782115 797 dbSNP
rs1476000822 799 dbSNP
rs1241928434 804 dbSNP
rs537063820 812 dbSNP
rs1214821889 815 dbSNP
rs1312263133 816 dbSNP
rs1039717552 819 dbSNP
rs1486785016 820 dbSNP
rs1383417323 836 dbSNP
rs1012886487 837 dbSNP
rs1281291086 841 dbSNP
rs959555326 843 dbSNP
rs987306984 844 dbSNP
rs533559135 864 dbSNP
rs1210725556 868 dbSNP
rs1278823343 869 dbSNP
rs1275089206 871 dbSNP
rs1215108112 872 dbSNP
rs201051213 877 dbSNP
rs562862075 879 dbSNP
rs1361134606 880 dbSNP
rs1268201939 885 dbSNP
rs1426929670 893 dbSNP
rs1396649814 894 dbSNP
rs1454559071 894 dbSNP
rs34984874 894 dbSNP
rs397743452 894 dbSNP
rs973978225 894 dbSNP
rs1383663838 897 dbSNP
rs1416328965 902 dbSNP
rs1432436527 905 dbSNP
rs1003801957 907 dbSNP
rs906353513 912 dbSNP
rs1372101603 915 dbSNP
rs1042186720 920 dbSNP
rs3744638 924 dbSNP
rs1319231545 930 dbSNP
rs893524407 931 dbSNP
rs1432386455 933 dbSNP
rs1260215632 935 dbSNP
rs1484968242 936 dbSNP
rs1215726991 938 dbSNP
rs1253869710 941 dbSNP
rs759106376 943 dbSNP
rs943024376 944 dbSNP
rs1355798592 950 dbSNP
rs1034748097 951 dbSNP
rs1407572323 951 dbSNP
rs910805822 952 dbSNP
rs1052009199 956 dbSNP
rs1362692592 956 dbSNP
rs999692073 957 dbSNP
rs933513950 960 dbSNP
rs919422317 967 dbSNP
rs1042278787 972 dbSNP
rs1258535415 976 dbSNP
rs533356019 999 dbSNP
rs182967908 1000 dbSNP
rs1011784098 1001 dbSNP
rs972155727 1001 dbSNP
rs1327081818 1003 dbSNP
rs1187463671 1008 dbSNP
rs758481131 1009 dbSNP
rs773847458 1011 dbSNP
rs893377880 1014 dbSNP
rs1312935801 1019 dbSNP
rs770611063 1024 dbSNP
rs991918191 1025 dbSNP
rs1244757290 1026 dbSNP
rs942652610 1041 dbSNP
rs1177653496 1042 dbSNP
rs190392190 1044 dbSNP
rs1471298232 1045 dbSNP
rs1256060997 1049 dbSNP
rs1234954196 1050 dbSNP
rs1335217424 1053 dbSNP
rs1292397527 1054 dbSNP
rs930053113 1060 dbSNP
rs115757219 1063 dbSNP
rs1162331164 1064 dbSNP
rs1460590332 1064 dbSNP
rs916475124 1064 dbSNP
rs962542861 1064 dbSNP
rs973864988 1064 dbSNP
rs1349197857 1068 dbSNP
rs1293950801 1070 dbSNP
rs748726522 1070 dbSNP
rs1334343421 1071 dbSNP
rs772924976 1074 dbSNP
rs772872067 1087 dbSNP
rs1298265814 1088 dbSNP
rs970590614 1103 dbSNP
rs1020794145 1105 dbSNP
rs1035103634 1106 dbSNP
rs1273714021 1113 dbSNP
rs1482017020 1120 dbSNP
rs999241206 1136 dbSNP
rs1257587906 1140 dbSNP
rs867025503 1144 dbSNP
rs966851941 1149 dbSNP
rs1354539983 1153 dbSNP
rs1179684300 1157 dbSNP
rs1009362172 1168 dbSNP
rs1421243852 1175 dbSNP
rs893576412 1179 dbSNP
rs1011731883 1180 dbSNP
rs1032060282 1194 dbSNP
rs373658547 1198 dbSNP
rs186218185 1200 dbSNP
rs1007155547 1203 dbSNP
rs1052484922 1205 dbSNP
rs1272099517 1210 dbSNP
rs768931614 1211 dbSNP
rs1214250569 1213 dbSNP
rs1296597970 1219 dbSNP
rs1339874488 1220 dbSNP
rs933565918 1224 dbSNP
rs1441296593 1225 dbSNP
rs898049413 1228 dbSNP
rs72847568 1229 dbSNP
rs942179884 1245 dbSNP
rs1475519496 1249 dbSNP
rs1187612082 1252 dbSNP
rs780718450 1259 dbSNP
rs909301697 1266 dbSNP
rs991578738 1267 dbSNP
rs1455864304 1268 dbSNP
rs765190748 1269 dbSNP
rs772691659 1273 dbSNP
rs182938126 1275 dbSNP
rs370503007 1277 dbSNP
rs563433553 1280 dbSNP
rs897214303 1282 dbSNP
rs937365708 1284 dbSNP
rs1236338515 1286 dbSNP
rs928652428 1288 dbSNP
rs982061679 1296 dbSNP
rs1215512463 1299 dbSNP
rs1362683532 1304 dbSNP
rs970634555 1305 dbSNP
rs1236262888 1307 dbSNP
rs1304000814 1311 dbSNP
rs1468829598 1312 dbSNP
rs1020858051 1313 dbSNP
rs1272324787 1316 dbSNP
rs1285740791 1318 dbSNP
rs545326317 1320 dbSNP
rs11544838 1328 dbSNP
rs1207646900 1330 dbSNP
rs1245820243 1331 dbSNP
rs1470073388 1341 dbSNP
rs553848298 1343 dbSNP
rs1377464055 1346 dbSNP
rs1307257300 1359 dbSNP
rs577746571 1360 dbSNP
rs916424720 1361 dbSNP
rs1032529338 1370 dbSNP
rs14529 1372 dbSNP
rs1327270486 1375 dbSNP
rs1396991931 1379 dbSNP
rs990659830 1381 dbSNP
rs1007308377 1396 dbSNP
rs1443793529 1397 dbSNP
rs375861221 1402 dbSNP
rs888812929 1403 dbSNP
rs1029960646 1410 dbSNP
rs537631711 1415 dbSNP
rs1434189178 1419 dbSNP
rs1281226140 1421 dbSNP
rs927939646 1426 dbSNP
rs997100575 1427 dbSNP
rs966424809 1429 dbSNP
rs898101896 1435 dbSNP
rs1160080431 1436 dbSNP
rs1022027781 1440 dbSNP
rs1378582191 1445 dbSNP
rs989241315 1454 dbSNP
rs553232410 1457 dbSNP
rs1234001930 1460 dbSNP
rs1252284087 1461 dbSNP
rs1157003335 1473 dbSNP
rs957491484 1481 dbSNP
rs1420160004 1485 dbSNP
rs1018456183 1491 dbSNP
rs1462155206 1491 dbSNP
rs544931487 1495 dbSNP
rs1384865239 1498 dbSNP
rs754472416 1516 dbSNP
rs1260997530 1519 dbSNP
rs1047141 1524 dbSNP
rs1214660043 1525 dbSNP
rs1350997360 1526 dbSNP
rs1409180803 1530 dbSNP
rs1047142 1531 dbSNP
rs891364353 1533 dbSNP
rs1354642742 1537 dbSNP
rs1029938084 1538 dbSNP
rs541249426 1539 dbSNP
rs1274210926 1543 dbSNP
rs1038385509 1544 dbSNP
rs751631265 1544 dbSNP
rs897168199 1544 dbSNP
rs994552357 1544 dbSNP
rs1187024197 1548 dbSNP
rs941453112 1558 dbSNP
rs1372431800 1562 dbSNP
rs779101778 1566 dbSNP
rs895276738 1572 dbSNP
rs573741554 1575 dbSNP
rs1024541385 1582 dbSNP
rs939224924 1583 dbSNP
rs1376673726 1584 dbSNP
rs1387630847 1586 dbSNP
rs1289780826 1613 dbSNP
rs555508475 1614 dbSNP
rs1338317276 1616 dbSNP
rs1229202656 1626 dbSNP
rs1056324777 1632 dbSNP
rs1341964538 1634 dbSNP
rs1203551263 1640 dbSNP
rs937435708 1641 dbSNP
rs754043662 1643 dbSNP
rs1251222207 1644 dbSNP
rs981456690 1650 dbSNP
rs1486016794 1659 dbSNP
rs1254224659 1661 dbSNP
rs1430519157 1664 dbSNP
rs946000332 1665 dbSNP
rs978050527 1676 dbSNP
rs1448649630 1678 dbSNP
rs945006463 1686 dbSNP
rs913847027 1687 dbSNP
rs1435413403 1691 dbSNP
rs1466536101 1694 dbSNP
rs1394446676 1696 dbSNP
rs190603192 1700 dbSNP
rs1399515431 1714 dbSNP
rs1383543495 1726 dbSNP
rs964453651 1728 dbSNP
rs144723098 1733 dbSNP
rs1226688265 1734 dbSNP
rs1306208657 1735 dbSNP
rs1032168052 1738 dbSNP
rs986014063 1747 dbSNP
rs1233206838 1748 dbSNP
rs986334519 1748 dbSNP
rs1262205771 1754 dbSNP
rs953159557 1757 dbSNP
rs1487110479 1769 dbSNP
rs1030014679 1770 dbSNP
rs1030298954 1773 dbSNP
rs1346474904 1774 dbSNP
rs1253697488 1775 dbSNP
rs1375368306 1783 dbSNP
rs1454895530 1786 dbSNP
rs1159391359 1787 dbSNP
rs1231751207 1789 dbSNP
rs1432509837 1801 dbSNP
rs1328306211 1802 dbSNP
rs752478339 1803 dbSNP
rs961676165 1808 dbSNP
rs1328641955 1811 dbSNP
rs1296760968 1812 dbSNP
rs80111771 1813 dbSNP
rs76984228 1814 dbSNP
rs532477207 1823 dbSNP
rs1318770041 1828 dbSNP
rs1229118075 1833 dbSNP
rs1267647060 1835 dbSNP
rs1327304840 1840 dbSNP
rs868314136 1858 dbSNP
rs1254631850 1860 dbSNP
rs1338806515 1869 dbSNP
rs776255018 1872 dbSNP
rs764646882 1875 dbSNP
rs1016890188 1877 dbSNP
rs1006473088 1887 dbSNP
rs1410634353 1893 dbSNP
rs1455311531 1897 dbSNP
rs558154812 1901 dbSNP
rs1166664187 1905 dbSNP
rs1350764649 1906 dbSNP
rs887978982 1907 dbSNP
rs768023717 1908 dbSNP
rs767512604 1911 dbSNP
rs754879614 1917 dbSNP
rs1373515309 1918 dbSNP
rs1287808229 1925 dbSNP
rs1169766350 1926 dbSNP
rs761299245 1927 dbSNP
rs1348767490 1930 dbSNP
rs1002084644 1931 dbSNP
rs1290860508 1932 dbSNP
rs540157143 1934 dbSNP
rs1322054056 1935 dbSNP
rs1220583597 1936 dbSNP
rs572125001 1937 dbSNP
rs566057424 1938 dbSNP
rs1182890214 1939 dbSNP
rs751119952 1946 dbSNP
rs1250354250 1951 dbSNP
rs1471327963 1955 dbSNP
rs765830401 1958 dbSNP
rs1414096615 1959 dbSNP
rs187425273 1966 dbSNP
rs1485119817 1967 dbSNP
rs1356713781 1984 dbSNP
rs1253472356 1986 dbSNP
rs1307973164 1989 dbSNP
rs1368709242 1989 dbSNP
rs1196974981 1993 dbSNP
rs1003765807 1997 dbSNP
rs1284947832 1998 dbSNP
rs1342157256 2000 dbSNP
rs34239604 2000 dbSNP
rs906381643 2001 dbSNP
rs1045833839 2003 dbSNP
rs535662833 2004 dbSNP
rs1226860952 2006 dbSNP
rs946052481 2008 dbSNP
rs1218453179 2015 dbSNP
rs913232525 2016 dbSNP
rs373638719 2017 dbSNP
rs1481758474 2022 dbSNP
rs1052385270 2023 dbSNP
rs1211592082 2040 dbSNP
rs945317502 2043 dbSNP
rs936608009 2044 dbSNP
rs182296602 2045 dbSNP
rs1422021279 2051 dbSNP
rs1450483268 2056 dbSNP
rs1168459357 2067 dbSNP
rs1340023084 2069 dbSNP
rs1039656187 2070 dbSNP
rs1332286746 2070 dbSNP
rs34306515 2078 dbSNP
rs910279190 2080 dbSNP
rs751915543 2081 dbSNP
rs1330550587 2085 dbSNP
rs955693107 2086 dbSNP
rs922796724 2105 dbSNP
rs1367044504 2108 dbSNP
rs1228897114 2109 dbSNP
rs1296662121 2110 dbSNP
rs879166721 2116 dbSNP
rs1052273 2121 dbSNP
rs986001566 2124 dbSNP
rs550296586 2125 dbSNP
rs189309988 2128 dbSNP
rs2288594 2130 dbSNP
rs961597443 2133 dbSNP
rs1419804210 2137 dbSNP
rs1465587318 2138 dbSNP
rs1188299417 2142 dbSNP
rs1246614852 2143 dbSNP
rs149808517 2145 dbSNP
rs975786911 2146 dbSNP
rs1424474235 2147 dbSNP
rs764884858 2154 dbSNP
rs961728080 2161 dbSNP
rs1472270208 2163 dbSNP
rs1005492787 2164 dbSNP
rs761001992 2167 dbSNP
rs1434698794 2172 dbSNP
rs533234178 2180 dbSNP
rs185975488 2181 dbSNP
rs1275376084 2183 dbSNP
rs906321409 2186 dbSNP
rs1216988566 2198 dbSNP
rs1052274 2203 dbSNP
rs1269523353 2209 dbSNP
rs1042222017 2216 dbSNP
rs1329384330 2216 dbSNP
rs1453698120 2217 dbSNP
rs1437876757 2225 dbSNP
rs1200150345 2230 dbSNP
rs1246660242 2231 dbSNP
rs1251931053 2236 dbSNP
rs1477355709 2240 dbSNP
rs1009438835 2246 dbSNP
rs1412883132 2247 dbSNP
rs1456905184 2248 dbSNP
rs1198596578 2250 dbSNP
rs1351173527 2260 dbSNP
rs1386101319 2263 dbSNP
rs893715278 2268 dbSNP
rs1053721182 2269 dbSNP
rs1330424485 2272 dbSNP
rs1434264119 2274 dbSNP
rs1289672919 2282 dbSNP
rs774799698 2282 dbSNP
rs942987481 2282 dbSNP
rs1275446730 2285 dbSNP
rs369730727 2288 dbSNP
rs1234221479 2289 dbSNP
rs1210787812 2290 dbSNP
rs1289670042 2291 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55731.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000582266.1 | 3UTR | aaugugaccgugucuaccucaacuaucccccuuucaauggcggccacucug
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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