pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-5p
Sequence 6| UUGUGUGAGUACAGAGAGCAUC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs763248242 2 dbSNP
rs186621048 3 dbSNP
rs1455267770 12 dbSNP
rs1170462641 19 dbSNP
rs1435853423 22 dbSNP
Putative Targets

Gene Information
Gene Symbol EDA2R   
Synonyms EDA-A2R, EDAA2R, TNFRSF27, XEDAR
Description ectodysplasin A2 receptor
Transcript NM_021783   
Expression
Putative miRNA Targets on EDA2R
3'UTR of EDA2R
(miRNA target sites are highlighted)
>EDA2R|NM_021783|3'UTR
   1 CTCTAATGAGGTCTCTTGGGCCCCTGGCAGCCTTGCCCAGTTGTTCTCTCTGGACTCTGTTCCTATACCACAACAGCAGC
  81 AGGGGCCTGAAATGTGATGTCCACAAGAGCTAATACCCTACAGATGGGGCATATCCTATCCCATCCCACCAGAGGATTGA
 161 TTCTCCATTTCACAAGGACTGATCTGGAGCATTTCTTGCTTCCCTTTTGTAGTCTGGGGAGCCAGATTCCACATTCATGG
 241 GACTACCAGACATGTTCCTAGCTCAACTTGATTATAGAGAAGAGGAGAGAGGACAGTGAATGGGGTAGGGTTTTCATGTC
 321 TGCATTTTTGGTCAGGTAAGCCTCTCAAAATTGTGTTGGCACATCTACCTAGCACTTTAGGGACAAAATCAAACCCTTCT
 401 CCCCTTTTAGCTCCTCCACACTGTCTCCCTCCTCAACACACACACACACACATACACACACATATACATAGACACACAAA
 481 CACACACACACACATTAATATCTATCTTGGGGGAGGCCTCGTGCCATAATTCCCAAGTTCATGTCTCAGACTGCTGCATT
 561 GCAGCATGAGGCAGGGCAAACACTTTCCCTCTAGATCCCTGGGGCCTCACCCTGTATTTGAGGTTCTCACCACCCTCAGC
 641 AGGGAGAAGGGCTGAAGTTCGCCATTTTGGAACCTTACAGAACATTTCTGAGCCAAAGTAATCTTCCTTCTGGGGCCTGA
 721 GTTCCCCAAACTACCCCACAGCAGTCCCTCAAAGACAGCCCTCAATCCATGTAGGGACATCTGAGTATGCCTCTTTCTAT
 801 TGAAATGTCAATTCAATCCCAGCTTTCTCACCACCGTTCCCCTTTGATTCTTTCTCAATTGTCTTTTTGCCTTTAGCTCC
 881 CACCTATACATCTCATGCTCAGAGAAAAACAAGTTCCTTAGAGGTTGTATTCTTTATTCTCCAAGAATCTGTCTGAAACT
 961 TGTACAGCTAGTTCCTGTCCCACAACTATTAAGTGGTTTATTAAGTACATTAGGCAGAATGTGCACTTCATCACCAGGTT
1041 CTAGCTCTGGCAAAGGAGTGCTGTCTACAGCAAGATTTTTGCTTTTAGAATTTTATTAACTACATCTTTTGGGTTCATCC
1121 ATCTACAAACACTGATTAAGGGCCCCTGGGGCAACCAATTGATCAGATTACTAAAAGGACTTGGGAAAAAGCAAAAAGGT
1201 CCCATTGTACTGGACTGAGGATTAGAAGCAATTGAAATACAAGCCTGTACCAAGCAAGCAGCCTGGCCCCACACAGGTAT
1281 TAGCAAATATGTGGTAACCAAGGTTTTAGGCCTTGGCCTTTAGGTTTCCTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTG
1361 TTTTTCTGCAACAGGTTATTCTTATCTCACTGGCTTTCACTGATCATGTTTAGACCTTCTGGTAGAAGAAATAATATCCA
1441 GACAGGGGATGATTTGGCTTCAGCAGGCTGCAGGTGTTCAAAGGTTGCCATGTGGCTGGCAGTGGTTCAAGCCCACATTT
1521 GACACTGCTGCTCTAGAGGAAAGATAATGATGGTAACACAGTAATAATAATAATAATAACAAAAATATGATAAAGTGAAA
1601 GAGTAAGACTTCTTCAGTGTGCTTGCTCATGGCATGAATGCTATGTGGACAGCCCAAGCCATACCCAGAATCACCTTAAT
1681 TCCAACTTTTTGAGGTTCAGCAATTGGAGGTGGCAATTGGCTTTGCATTTTAAAGTATTTCGGGTAAAGGTGAAGTGAAG
1761 GATTTTCGTCTTTATAATTTCTGTTTGGCCATGGCAAATACCATAGTTGAGTATTTGCTTCAGGAGAGTTCTTTTTACAG
1841 TTTTACTTTTCAATGCTGAGGCATATTTCTTTGAGCACTGTGCTTTTATGTGTCTTTCTACAAAGGGGTTATTGGTCAGT
1921 GGAAGAACAAAGTACACTTGATAAAAACATTTTCAACATACATTGAGCCTAAACAGCAGTTAAGTTGTCTCTAAATGAAC
2001 TAGCAAAAAAAAAAAATGTAGTTTTTGTTTGTAAGGAAGGGGAGGTATTTCCTGAGAATGAATTTTTTTTTTTTTGGATT
2081 ACTGTTTTTCTCTCCATATACCTTGACTTGGATTTTGACAGGAGGGAGCCTGGGAAAATAATTTTTTCCTCCAAGATTCT
2161 CAGATCCAGGTTAGGAAAGGATTCAGCACTACAGCATACCCCTCTACAACATACAGCCCTGTCACATTGAGATCATAATC
2241 CCTCCTGTCCCACTCCTCTCTACCAACCCCACCCTACTAGCTAGGTCTTCAGTGTTTTACATTGAATATTGGTACATTTT
2321 AATTATTTTTTCTCATAAATGGGTTATTTATAGAAATTTTGTTAACTCTTGAGCCATATGCATGTGTAGATACTGGCAGG
2401 GCTATGTTTGTTTATGATGCTCTGCAAACATTTCATATTGGCCAATAAACAGAAATATATCCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuACGAGAGACAUGAG-UGUGUu 5'
            || ||||  | ||| ||||| 
Target 5' acTG-TCTCCCTCCTCAACACAc 3'
420 - 441 131.00 -10.50
2
miRNA  3' cuaCGAGAGACAUGAGUGUGUu 5'
             ||   |||  | |||||| 
Target 5' caaGCAGCCTGGCCCCACACAg 3'
1255 - 1276 123.00 -12.20
3
miRNA  3' cuacgagagacAUGAGUGUGUU 5'
                     ||| |||||| 
Target 5' acacacacacaTACACACACAT 3'
442 - 463 123.00 -8.50
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1404494081 1 dbSNP
rs1035889065 3 dbSNP
rs763074961 4 dbSNP
rs775317510 5 dbSNP
rs1003096315 6 dbSNP
rs1473865374 7 dbSNP
rs754563108 8 dbSNP
rs1369131770 9 dbSNP
rs762978487 10 dbSNP
rs186533309 11 dbSNP
rs1249795392 12 dbSNP
rs1005526523 15 dbSNP
rs1189023613 24 dbSNP
rs1446210773 30 dbSNP
rs745765924 32 dbSNP
rs1400024337 36 dbSNP
rs749141935 39 dbSNP
rs11379040 40 dbSNP
rs398102001 40 dbSNP
rs776547151 40 dbSNP
rs770707203 41 dbSNP
rs746668039 44 dbSNP
rs777347884 45 dbSNP
rs1381271086 47 dbSNP
rs1307534330 48 dbSNP
rs759099203 48 dbSNP
rs753427996 62 dbSNP
rs1333583831 65 dbSNP
rs776496115 66 dbSNP
rs1322959887 71 dbSNP
rs1335784547 72 dbSNP
rs1211250827 101 dbSNP
rs770536999 102 dbSNP
rs4827499 103 dbSNP
rs143433678 105 dbSNP
rs1230902290 107 dbSNP
rs1469564707 108 dbSNP
rs1433442162 120 dbSNP
rs1012419765 121 dbSNP
rs1416076256 123 dbSNP
rs1459989943 127 dbSNP
rs1037142442 134 dbSNP
rs755627600 135 dbSNP
rs1179279632 138 dbSNP
rs1327285930 139 dbSNP
rs772414104 140 dbSNP
rs1354247101 147 dbSNP
rs891995795 151 dbSNP
rs149013149 153 dbSNP
rs779086447 154 dbSNP
rs1377577421 168 dbSNP
rs769120795 185 dbSNP
rs1292113682 203 dbSNP
rs1318173897 205 dbSNP
rs1442788425 212 dbSNP
rs1270659823 213 dbSNP
rs921187656 215 dbSNP
rs1210536186 221 dbSNP
rs902505960 223 dbSNP
rs1208611669 233 dbSNP
rs1187384510 234 dbSNP
rs1478929566 254 dbSNP
rs1166332977 266 dbSNP
rs183716883 267 dbSNP
rs1043390904 268 dbSNP
rs780293120 280 dbSNP
rs191126406 283 dbSNP
rs1374232440 291 dbSNP
rs913634819 293 dbSNP
rs185775333 296 dbSNP
rs1285576445 299 dbSNP
rs1229181905 300 dbSNP
rs939115969 308 dbSNP
rs1051992108 316 dbSNP
rs1268096804 335 dbSNP
rs928781057 343 dbSNP
rs1338311035 354 dbSNP
rs1219658818 359 dbSNP
rs982016982 365 dbSNP
rs931840614 368 dbSNP
rs1341410404 371 dbSNP
rs1209993309 373 dbSNP
rs1312700981 384 dbSNP
rs781336630 391 dbSNP
rs1023680333 393 dbSNP
rs1489285685 394 dbSNP
rs974084739 397 dbSNP
rs1362959936 416 dbSNP
rs374491708 417 dbSNP
rs941783045 421 dbSNP
rs763400401 423 dbSNP
rs1400182436 424 dbSNP
rs1393584807 425 dbSNP
rs1434675432 427 dbSNP
rs1405973143 431 dbSNP
rs1165193718 432 dbSNP
rs1473277090 435 dbSNP
rs1159727235 452 dbSNP
rs907524744 458 dbSNP
rs1383458278 459 dbSNP
rs1315608254 479 dbSNP
rs1185483355 480 dbSNP
rs1489152317 482 dbSNP
rs1004276750 484 dbSNP
rs1263737208 484 dbSNP
rs1305369956 486 dbSNP
rs1345424732 489 dbSNP
rs1233509399 493 dbSNP
rs1286716630 494 dbSNP
rs1352742141 500 dbSNP
rs891218851 502 dbSNP
rs551168185 506 dbSNP
rs1444774809 509 dbSNP
rs1201228328 521 dbSNP
rs752739428 522 dbSNP
rs1291453179 523 dbSNP
rs1029463677 524 dbSNP
rs1159595686 531 dbSNP
rs997116860 532 dbSNP
rs1156320298 534 dbSNP
rs1383531468 535 dbSNP
rs1211180500 542 dbSNP
rs1405630811 544 dbSNP
rs1327447189 546 dbSNP
rs899745242 547 dbSNP
rs1025233153 550 dbSNP
rs764939344 551 dbSNP
rs371023932 562 dbSNP
rs946388836 565 dbSNP
rs181409666 571 dbSNP
rs959551608 573 dbSNP
rs1236706517 579 dbSNP
rs1260250383 583 dbSNP
rs1052065606 585 dbSNP
rs1032498067 591 dbSNP
rs1215610438 593 dbSNP
rs939062127 594 dbSNP
rs188711536 598 dbSNP
rs1231769188 602 dbSNP
rs1342842269 606 dbSNP
rs1299342721 609 dbSNP
rs927754080 618 dbSNP
rs1240351815 630 dbSNP
rs766083819 640 dbSNP
rs902641522 641 dbSNP
rs1362736095 644 dbSNP
rs1021373441 649 dbSNP
rs1343486140 679 dbSNP
rs1166431380 683 dbSNP
rs1008228850 684 dbSNP
rs890333063 685 dbSNP
rs1051697372 689 dbSNP
rs948926173 693 dbSNP
rs1417340590 697 dbSNP
rs916153477 698 dbSNP
rs900317811 700 dbSNP
rs765539517 715 dbSNP
rs1434315337 717 dbSNP
rs1037567430 727 dbSNP
rs941751900 733 dbSNP
rs1340958828 742 dbSNP
rs1424157272 744 dbSNP
rs1235285727 747 dbSNP
rs1291499632 749 dbSNP
rs907656457 752 dbSNP
rs759678038 755 dbSNP
rs1253481758 756 dbSNP
rs760439992 757 dbSNP
rs949094414 769 dbSNP
rs1257536385 770 dbSNP
rs918140551 776 dbSNP
rs1189460057 785 dbSNP
rs1467642837 788 dbSNP
rs991070755 792 dbSNP
rs1170886616 799 dbSNP
rs1374413998 805 dbSNP
rs1015564904 817 dbSNP
rs1460308886 819 dbSNP
rs1297388749 823 dbSNP
rs1270872446 828 dbSNP
rs761234742 833 dbSNP
rs1416484083 844 dbSNP
rs1311150333 847 dbSNP
rs959646460 849 dbSNP
rs1219507541 850 dbSNP
rs1298067870 855 dbSNP
rs1305957391 875 dbSNP
rs1227247562 881 dbSNP
rs1256893871 890 dbSNP
rs185461638 900 dbSNP
rs1320415831 908 dbSNP
rs181632532 917 dbSNP
rs1296809479 919 dbSNP
rs1030199116 924 dbSNP
rs1214372810 926 dbSNP
rs1426353728 927 dbSNP
rs1021043636 959 dbSNP
rs1395386896 960 dbSNP
rs1436538433 965 dbSNP
rs996673957 968 dbSNP
rs1277125415 973 dbSNP
rs760678289 975 dbSNP
rs5965275 977 dbSNP
rs1393908594 986 dbSNP
rs376445130 988 dbSNP
rs774991418 990 dbSNP
rs1010752833 998 dbSNP
rs1290707351 1003 dbSNP
rs188878965 1004 dbSNP
rs1360212248 1010 dbSNP
rs1467416557 1016 dbSNP
rs1350437527 1018 dbSNP
rs1054122424 1020 dbSNP
rs1028764733 1022 dbSNP
rs144833755 1024 dbSNP
rs1052014019 1030 dbSNP
rs939061934 1038 dbSNP
rs771945970 1040 dbSNP
rs935789894 1046 dbSNP
rs780419619 1049 dbSNP
rs1045246774 1050 dbSNP
rs1484692768 1058 dbSNP
rs748022959 1065 dbSNP
rs769936172 1075 dbSNP
rs185772827 1076 dbSNP
rs1038538366 1078 dbSNP
rs781117721 1082 dbSNP
rs1394477315 1085 dbSNP
rs757423523 1086 dbSNP
rs768421943 1091 dbSNP
rs1343466795 1094 dbSNP
rs748001555 1101 dbSNP
rs1294387304 1105 dbSNP
rs908828425 1106 dbSNP
rs1373429263 1108 dbSNP
rs1439246758 1112 dbSNP
rs982779056 1116 dbSNP
rs955381064 1120 dbSNP
rs1378307997 1131 dbSNP
rs1457895253 1136 dbSNP
rs922696975 1138 dbSNP
rs532138207 1140 dbSNP
rs917579667 1142 dbSNP
rs1314563481 1145 dbSNP
rs1054755023 1149 dbSNP
rs1204185603 1152 dbSNP
rs748906883 1155 dbSNP
rs778955991 1162 dbSNP
rs755717593 1165 dbSNP
rs749905036 1171 dbSNP
rs1235754898 1190 dbSNP
rs1178825128 1205 dbSNP
rs966860625 1219 dbSNP
rs1418618356 1230 dbSNP
rs1165743508 1241 dbSNP
rs913949575 1246 dbSNP
rs1022506172 1249 dbSNP
rs1460018093 1254 dbSNP
rs1325657705 1257 dbSNP
rs1355440643 1258 dbSNP
rs1010700388 1274 dbSNP
rs1445017471 1277 dbSNP
rs956621733 1279 dbSNP
rs986887813 1282 dbSNP
rs1030902253 1284 dbSNP
rs1373210569 1289 dbSNP
rs1370296491 1306 dbSNP
rs1293357732 1308 dbSNP
rs1301402779 1312 dbSNP
rs1449113088 1324 dbSNP
rs1231029291 1330 dbSNP
rs778476152 1335 dbSNP
rs1438228794 1340 dbSNP
rs1300438678 1341 dbSNP
rs1422584736 1345 dbSNP
rs1431998244 1354 dbSNP
rs1172664065 1355 dbSNP
rs1206315740 1358 dbSNP
rs1326218941 1358 dbSNP
rs1316596945 1359 dbSNP
rs1407324939 1362 dbSNP
rs1188760662 1366 dbSNP
rs1420028300 1367 dbSNP
rs747656700 1378 dbSNP
rs1163061834 1379 dbSNP
rs1420468772 1381 dbSNP
rs754985466 1382 dbSNP
rs1392023017 1396 dbSNP
rs753643237 1402 dbSNP
rs1475010001 1404 dbSNP
rs1240150979 1407 dbSNP
rs753176583 1408 dbSNP
rs1200688842 1415 dbSNP
rs906164591 1416 dbSNP
rs1267691477 1424 dbSNP
rs910846512 1426 dbSNP
rs955673110 1430 dbSNP
rs1238611530 1454 dbSNP
rs1354531400 1456 dbSNP
rs1415878074 1459 dbSNP
rs1274651735 1464 dbSNP
rs1215670621 1467 dbSNP
rs1310848583 1474 dbSNP
rs1339258298 1476 dbSNP
rs756693141 1477 dbSNP
rs1012371702 1484 dbSNP
rs1229437287 1490 dbSNP
rs750885472 1495 dbSNP
rs1346433974 1500 dbSNP
rs898922519 1504 dbSNP
rs1302777164 1507 dbSNP
rs1339651993 1513 dbSNP
rs1216168477 1515 dbSNP
rs996890050 1523 dbSNP
rs1403246403 1524 dbSNP
rs1306851668 1525 dbSNP
rs1211458211 1528 dbSNP
rs1038540204 1530 dbSNP
rs1259728383 1532 dbSNP
rs765511051 1535 dbSNP
rs1239620688 1540 dbSNP
rs1242985043 1552 dbSNP
rs908775888 1553 dbSNP
rs1476507323 1555 dbSNP
rs1166535759 1558 dbSNP
rs1419177808 1559 dbSNP
rs1047372270 1561 dbSNP
rs964585046 1563 dbSNP
rs766286706 1564 dbSNP
rs1006034522 1566 dbSNP
rs193006688 1575 dbSNP
rs1326668879 1578 dbSNP
rs4827380 1586 dbSNP
rs1268229832 1587 dbSNP
rs766934065 1592 dbSNP
rs1306542980 1604 dbSNP
rs1048049111 1605 dbSNP
rs975440752 1612 dbSNP
rs113456229 1613 dbSNP
rs1210336009 1617 dbSNP
rs896262232 1622 dbSNP
rs1054677154 1627 dbSNP
rs1191255070 1632 dbSNP
rs775539008 1633 dbSNP
rs1455008804 1635 dbSNP
rs1195887635 1650 dbSNP
rs1393865102 1651 dbSNP
rs1413979083 1672 dbSNP
rs1434579649 1674 dbSNP
rs1171489683 1683 dbSNP
rs766544215 1690 dbSNP
rs989257059 1696 dbSNP
rs1043976119 1697 dbSNP
rs1315844547 1708 dbSNP
rs1419764660 1719 dbSNP
rs1362778531 1741 dbSNP
rs1156450716 1758 dbSNP
rs1441454522 1762 dbSNP
rs945644771 1774 dbSNP
rs189490989 1775 dbSNP
rs1425235405 1788 dbSNP
rs1414091426 1797 dbSNP
rs12855916 1804 dbSNP
rs1203429062 1828 dbSNP
rs1267813859 1833 dbSNP
rs1349042201 1833 dbSNP
rs763482978 1833 dbSNP
rs768305887 1833 dbSNP
rs772536506 1833 dbSNP
rs1183102754 1834 dbSNP
rs1470901551 1835 dbSNP
rs1485551702 1835 dbSNP
rs1156302371 1843 dbSNP
rs914062164 1847 dbSNP
rs1327677421 1852 dbSNP
rs1391970279 1863 dbSNP
rs773251908 1867 dbSNP
rs1329501033 1872 dbSNP
rs775774109 1875 dbSNP
rs934089182 1875 dbSNP
rs1287739497 1880 dbSNP
rs1335729686 1886 dbSNP
rs1486218592 1889 dbSNP
rs1235324699 1894 dbSNP
rs767481975 1895 dbSNP
rs1260271492 1896 dbSNP
rs970673776 1897 dbSNP
rs1023690067 1898 dbSNP
rs796146247 1901 dbSNP
rs1253368723 1904 dbSNP
rs1436565911 1917 dbSNP
rs1323689304 1922 dbSNP
rs1179067200 1933 dbSNP
rs1294146080 1939 dbSNP
rs1475351286 1941 dbSNP
rs1166591003 1951 dbSNP
rs975382427 1954 dbSNP
rs962722253 1956 dbSNP
rs1298519905 1957 dbSNP
rs1398559108 1960 dbSNP
rs1389535286 1963 dbSNP
rs1011948860 1969 dbSNP
rs1307531090 1971 dbSNP
rs770200368 1996 dbSNP
rs1037479493 2010 dbSNP
rs1382746883 2015 dbSNP
rs1291709741 2019 dbSNP
rs1005709106 2025 dbSNP
rs1228687578 2029 dbSNP
rs761650334 2034 dbSNP
rs1286557304 2037 dbSNP
rs1026142621 2040 dbSNP
rs1013837202 2041 dbSNP
rs1250459624 2049 dbSNP
rs1485743571 2054 dbSNP
rs1189436834 2062 dbSNP
rs1253710267 2064 dbSNP
rs10521337 2065 dbSNP
rs1163777791 2068 dbSNP
rs1170879761 2070 dbSNP
rs1374540557 2072 dbSNP
rs934196487 2073 dbSNP
rs1475076952 2077 dbSNP
rs901430493 2086 dbSNP
rs1033404831 2089 dbSNP
rs1196444652 2090 dbSNP
rs1001804444 2095 dbSNP
rs903512803 2098 dbSNP
rs1043402912 2099 dbSNP
rs1382928133 2101 dbSNP
rs1298233369 2104 dbSNP
rs1325004071 2111 dbSNP
rs945642338 2121 dbSNP
rs776950810 2122 dbSNP
rs1350659860 2130 dbSNP
rs768340712 2138 dbSNP
rs1253671791 2139 dbSNP
rs1415747366 2152 dbSNP
rs942742810 2153 dbSNP
rs915315613 2165 dbSNP
rs1274030595 2168 dbSNP
rs892750251 2187 dbSNP
rs1447475900 2191 dbSNP
rs1213378845 2196 dbSNP
rs989496512 2198 dbSNP
rs935438204 2199 dbSNP
rs923737334 2213 dbSNP
rs981919144 2215 dbSNP
rs779430097 2216 dbSNP
rs971043343 2216 dbSNP
rs41312132 2219 dbSNP
rs1290910018 2221 dbSNP
rs1383036311 2223 dbSNP
rs1434897525 2236 dbSNP
rs1304549926 2238 dbSNP
rs1373830007 2241 dbSNP
rs990873560 2243 dbSNP
rs975475863 2244 dbSNP
rs1311153782 2247 dbSNP
rs775305683 2250 dbSNP
rs941453619 2251 dbSNP
rs1015949475 2256 dbSNP
rs1325739131 2257 dbSNP
rs1293357144 2263 dbSNP
rs1189351969 2271 dbSNP
rs1424352613 2276 dbSNP
rs1004610149 2292 dbSNP
rs1419791981 2297 dbSNP
rs1161355982 2327 dbSNP
rs1410046143 2335 dbSNP
rs1387946159 2342 dbSNP
rs1327027431 2343 dbSNP
rs1394653673 2344 dbSNP
rs769549875 2347 dbSNP
rs745413845 2348 dbSNP
rs562089101 2351 dbSNP
rs192704630 2354 dbSNP
rs998397073 2357 dbSNP
rs777742578 2362 dbSNP
rs1459592783 2373 dbSNP
rs901417532 2382 dbSNP
rs780849264 2385 dbSNP
rs754892508 2389 dbSNP
rs749255363 2390 dbSNP
rs893786172 2403 dbSNP
rs1372953640 2407 dbSNP
rs779984547 2424 dbSNP
rs377126848 2431 dbSNP
rs1053719043 2443 dbSNP
rs759006589 2450 dbSNP
rs187264273 2451 dbSNP
rs924063197 2453 dbSNP
rs960548538 2460 dbSNP
rs982352133 2463 dbSNP
rs1409796130 2473 dbSNP
rs1033498190 2484 dbSNP
rs1165984412 2491 dbSNP
rs182609509 2492 dbSNP
rs748612393 2496 dbSNP
rs1001897910 2501 dbSNP
rs916470181 2505 dbSNP
rs1355639411 2511 dbSNP
rs903647261 2512 dbSNP
rs767250275 2514 dbSNP
rs756882648 2520 dbSNP
rs990722384 2521 dbSNP
rs1408667141 2522 dbSNP
rs1021914125 2523 dbSNP
rs1226407767 2529 dbSNP
rs963308605 2532 dbSNP
rs1015895630 2536 dbSNP
rs1249529646 2539 dbSNP
rs983122572 2548 dbSNP
rs1371050677 2550 dbSNP
rs1249499674 2557 dbSNP
rs1302004924 2564 dbSNP
rs950437509 2580 dbSNP
rs751040763 2582 dbSNP
rs1471894626 2584 dbSNP
rs1181653032 2590 dbSNP
rs998749926 2618 dbSNP
rs1420605389 2619 dbSNP
rs1412160384 2624 dbSNP
rs1311274833 2625 dbSNP
rs1370458227 2627 dbSNP
rs1428608880 2628 dbSNP
rs1312948424 2629 dbSNP
rs934283997 2635 dbSNP
rs1392324302 2642 dbSNP
rs901314310 2648 dbSNP
rs899987467 2652 dbSNP
rs1018877720 2657 dbSNP
rs779406806 2663 dbSNP
rs1039928012 2670 dbSNP
rs1341365687 2674 dbSNP
rs1211692201 2680 dbSNP
rs1007105659 2684 dbSNP
rs1282490925 2689 dbSNP
rs1440929512 2691 dbSNP
rs1209630325 2692 dbSNP
rs894070052 2698 dbSNP
rs1166635812 2703 dbSNP
rs1437173540 2712 dbSNP
rs192208520 2716 dbSNP
rs1455045438 2717 dbSNP
rs941422545 2718 dbSNP
rs1403675918 2720 dbSNP
rs1452660171 2720 dbSNP
rs1412236392 2722 dbSNP
rs763436197 2722 dbSNP
rs776042113 2722 dbSNP
rs1234868329 2723 dbSNP
rs1276719597 2726 dbSNP
rs1343007768 2727 dbSNP
rs1285285760 2728 dbSNP
rs999521575 2728 dbSNP
rs1207217939 2734 dbSNP
rs1247747439 2740 dbSNP
rs1469332693 2746 dbSNP
rs771209321 2746 dbSNP
rs909969688 2746 dbSNP
rs902587958 2750 dbSNP
rs1046503538 2758 dbSNP
rs1182870906 2780 dbSNP
rs754151023 2787 dbSNP
rs372797957 2794 dbSNP
rs916392275 2803 dbSNP
rs187428906 2804 dbSNP
rs1458435971 2808 dbSNP
rs1047021840 2812 dbSNP
rs1248196672 2825 dbSNP
rs1387583717 2826 dbSNP
rs929977799 2826 dbSNP
rs150832630 2827 dbSNP
rs1329259183 2832 dbSNP
rs1232708636 2836 dbSNP
rs1280138587 2838 dbSNP
rs1331520516 2842 dbSNP
rs941891103 2844 dbSNP
rs1226760132 2855 dbSNP
rs771141382 2859 dbSNP
rs756296786 2864 dbSNP
rs1335982974 2868 dbSNP
rs1211990852 2880 dbSNP
rs184071358 2885 dbSNP
rs191827753 2888 dbSNP
rs1197565612 2890 dbSNP
rs1355306983 2895 dbSNP
rs1473386242 2905 dbSNP
rs1279769763 2917 dbSNP
rs983111402 2923 dbSNP
rs1237935193 2932 dbSNP
rs950385123 2933 dbSNP
rs187361405 2949 dbSNP
rs1335526915 2951 dbSNP
rs926452444 2953 dbSNP
rs1388490145 2955 dbSNP
rs1386085672 2960 dbSNP
rs967732583 2960 dbSNP
rs1327210180 2989 dbSNP
rs1408059574 3003 dbSNP
rs1417041153 3006 dbSNP
rs1288029937 3013 dbSNP
rs1022471863 3014 dbSNP
rs1009207424 3023 dbSNP
rs1263988900 3025 dbSNP
rs1356287322 3027 dbSNP
rs956555382 3028 dbSNP
rs922944284 3029 dbSNP
rs961186626 3035 dbSNP
rs1277357811 3039 dbSNP
rs975834507 3044 dbSNP
rs1179369188 3054 dbSNP
rs964822716 3062 dbSNP
rs1018412755 3067 dbSNP
rs1432929739 3069 dbSNP
rs1007505145 3074 dbSNP
rs749236762 3083 dbSNP
rs1032581106 3085 dbSNP
rs1457194393 3086 dbSNP
rs1168475893 3087 dbSNP
rs999470766 3090 dbSNP
rs780183227 3093 dbSNP
rs1307426843 3102 dbSNP
rs1046850571 3105 dbSNP
rs769692605 3121 dbSNP
rs745629164 3122 dbSNP
rs1340288546 3135 dbSNP
rs1005728735 3140 dbSNP
rs1256703015 3141 dbSNP
rs1208729681 3142 dbSNP
rs767481572 3147 dbSNP
rs780880826 3148 dbSNP
rs941881293 3151 dbSNP
rs1201867225 3161 dbSNP
rs1253621752 3179 dbSNP
rs909109533 3187 dbSNP
rs1188969344 3188 dbSNP
rs1391956388 3191 dbSNP
rs1168061097 3206 dbSNP
rs756867323 3207 dbSNP
rs1348048864 3208 dbSNP
rs774187490 3211 dbSNP
rs1235459212 3220 dbSNP
rs764045078 3233 dbSNP
rs1293208647 3234 dbSNP
rs922925723 3240 dbSNP
rs751227513 3241 dbSNP
rs1300187964 3249 dbSNP
rs112656000 3250 dbSNP
rs777260163 3253 dbSNP
rs1363655034 3259 dbSNP
rs1228244478 3274 dbSNP
rs757941971 3295 dbSNP
rs1304771129 3296 dbSNP
rs976163928 3297 dbSNP
rs1312320041 3312 dbSNP
rs753179116 3317 dbSNP
rs141395758 3318 dbSNP
rs939269965 3323 dbSNP
rs1209138575 3327 dbSNP
rs1249612363 3347 dbSNP
rs985576347 3357 dbSNP
rs1463514756 3358 dbSNP
rs1187894699 3362 dbSNP
rs958230140 3365 dbSNP
rs775397437 3372 dbSNP
rs1167447016 3377 dbSNP
rs1475412734 3378 dbSNP
rs1416951435 3381 dbSNP
rs1185688237 3382 dbSNP
rs1476325502 3383 dbSNP
rs1242661388 3384 dbSNP
rs1187843294 3397 dbSNP
rs1322987831 3397 dbSNP
rs35437871 3397 dbSNP
rs397896644 3397 dbSNP
rs1214370901 3402 dbSNP
rs1327237079 3405 dbSNP
rs1370359917 3407 dbSNP
rs1444789211 3416 dbSNP
rs1298488060 3418 dbSNP
rs1311276199 3422 dbSNP
rs1274644795 3423 dbSNP
rs1214004837 3424 dbSNP
rs1335869627 3425 dbSNP
rs980539470 3427 dbSNP
rs769639876 3439 dbSNP
rs1273001159 3440 dbSNP
rs1489383545 3441 dbSNP
rs1189558103 3442 dbSNP
rs1231868243 3447 dbSNP
rs1266696832 3453 dbSNP
rs1410022317 3456 dbSNP
rs1473057311 3456 dbSNP
rs1485928039 3456 dbSNP
rs201838096 3456 dbSNP
rs1364619739 3457 dbSNP
rs1271301746 3458 dbSNP
rs1430087792 3461 dbSNP
rs1324830581 3462 dbSNP
rs1328137547 3465 dbSNP
rs182761897 3471 dbSNP
rs1462212374 3475 dbSNP
rs1165851263 3476 dbSNP
rs1352137374 3490 dbSNP
rs978289143 3491 dbSNP
rs11093958 3509 dbSNP
rs967366901 3510 dbSNP
rs967868242 3512 dbSNP
rs1290250827 3528 dbSNP
rs766662896 3546 dbSNP
rs1323452316 3552 dbSNP
rs760943194 3564 dbSNP
rs1264759607 3565 dbSNP
rs773639298 3568 dbSNP
rs368049948 3590 dbSNP
rs1034202567 3592 dbSNP
rs988282372 3597 dbSNP
rs1006042900 3612 dbSNP
rs1254378853 3624 dbSNP
rs1029738922 3628 dbSNP
rs746483891 3648 dbSNP
rs1047600175 3653 dbSNP
rs1467712699 3661 dbSNP
rs929176366 3661 dbSNP
rs901793915 3676 dbSNP
rs1219753207 3678 dbSNP
rs78817194 3682 dbSNP
rs1309245164 3683 dbSNP
rs964254225 3684 dbSNP
rs1018548077 3688 dbSNP
rs1040037960 3697 dbSNP
rs762034997 3707 dbSNP
rs1214545206 3712 dbSNP
rs1312007777 3713 dbSNP
rs1342705705 3716 dbSNP
rs1047258806 3720 dbSNP
rs1272511021 3722 dbSNP
rs1482870423 3723 dbSNP
rs1485682 3735 dbSNP
rs989831059 3739 dbSNP
rs1239410551 3746 dbSNP
rs935770314 3753 dbSNP
rs925416015 3759 dbSNP
rs994653668 3760 dbSNP
rs978237041 3762 dbSNP
rs1370437717 3766 dbSNP
rs1324149589 3771 dbSNP
rs1387737085 3771 dbSNP
rs1444089241 3774 dbSNP
rs1408827493 3775 dbSNP
rs1354959663 3776 dbSNP
rs895943014 3779 dbSNP
rs966977166 3780 dbSNP
rs769731345 3781 dbSNP
rs1365874057 3783 dbSNP
rs1408186985 3784 dbSNP
rs1396834854 3786 dbSNP
rs1025684971 3794 dbSNP
rs992152926 3795 dbSNP
rs1453283369 3836 dbSNP
rs189633928 3839 dbSNP
rs1440841066 3841 dbSNP
rs959664771 3843 dbSNP
rs1250742730 3845 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 60401.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuacgagagacAUGAGUGUGUu 5'
                     ||| |||||| 
Target 5' -cacacacacaUACACACACAu 3'
1 - 21
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000374719.3 | 3UTR | CACACACACAUACACACACAUAUACAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
140 hsa-miR-6818-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071796 RNF11 ring finger protein 11 2 2
MIRT077120 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT079951 RNF138 ring finger protein 138 2 2
MIRT102968 EN2 engrailed homeobox 2 2 4
MIRT115694 MGRN1 mahogunin ring finger 1 2 2
MIRT121074 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT143171 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT145635 LASP1 LIM and SH3 protein 1 2 2
MIRT282026 ARID3B AT-rich interaction domain 3B 2 6
MIRT301684 EP300 E1A binding protein p300 2 2
MIRT328627 AKIRIN1 akirin 1 2 2
MIRT340977 IPO5 importin 5 2 2
MIRT371401 STC2 stanniocalcin 2 2 2
MIRT378008 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT445185 CCDC88C coiled-coil domain containing 88C 2 2
MIRT447120 DUSP16 dual specificity phosphatase 16 2 2
MIRT449153 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT450200 ABHD15 abhydrolase domain containing 15 2 2
MIRT453853 ZNF12 zinc finger protein 12 2 2
MIRT459077 LSM1 LSM1 homolog, mRNA degradation associated 2 2
MIRT461304 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT464137 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT468114 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT471401 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT478220 DDX52 DExD-box helicase 52 2 2
MIRT479695 CCNT1 cyclin T1 2 2
MIRT479779 CCND1 cyclin D1 2 2
MIRT484980 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485016 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485034 TMEM189 transmembrane protein 189 2 8
MIRT485221 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490143 TERF2IP TERF2 interacting protein 2 6
MIRT508908 DOK6 docking protein 6 2 6
MIRT513877 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT515966 C9orf156 tRNA methyltransferase O 2 4
MIRT517892 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT518660 CLVS2 clavesin 2 2 4
MIRT520027 YOD1 YOD1 deubiquitinase 2 6
MIRT523884 EPHA5 EPH receptor A5 2 4
MIRT529237 PORCN porcupine O-acyltransferase 2 2
MIRT535337 PFN1 profilin 1 2 2
MIRT537532 EZR ezrin 2 2
MIRT537695 ELOVL6 ELOVL fatty acid elongase 6 2 2
MIRT538494 CLOCK clock circadian regulator 2 2
MIRT539140 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT541380 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT545018 PLP1 proteolipid protein 1 2 2
MIRT547732 KIF23 kinesin family member 23 2 4
MIRT548257 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT550372 MYLK3 myosin light chain kinase 3 2 2
MIRT551867 TMEM47 transmembrane protein 47 2 2
MIRT552289 SNAP29 synaptosome associated protein 29 2 2
MIRT552902 VSNL1 visinin like 1 2 8
MIRT552990 VAMP4 vesicle associated membrane protein 4 2 4
MIRT554729 RHOC ras homolog family member C 2 2
MIRT555301 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT556832 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT557523 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT558238 EDA2R ectodysplasin A2 receptor 2 2
MIRT558920 CBX1 chromobox 1 2 2
MIRT559198 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT559611 AMER1 APC membrane recruitment protein 1 2 2
MIRT559769 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT564648 ZNF487P zinc finger protein 487 1 1
MIRT565856 NHS NHS actin remodeling regulator 2 2
MIRT569044 ZNF655 zinc finger protein 655 2 2
MIRT569154 SIGMAR1 sigma non-opioid intracellular receptor 1 2 2
MIRT569166 DMD dystrophin 2 2
MIRT569205 CASZ1 castor zinc finger 1 2 2
MIRT569264 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT569431 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT569476 CTSE cathepsin E 2 2
MIRT570232 NCAN neurocan 2 2
MIRT570519 SHH sonic hedgehog 2 2
MIRT570680 FZD5 frizzled class receptor 5 2 2
MIRT572161 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT575142 Cd93 CD93 antigen 2 3
MIRT575644 Mitf microphthalmia-associated transcription factor 2 3
MIRT575653 Synpo synaptopodin 2 4
MIRT576375 Runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 2 2
MIRT576388 Fhl2 four and a half LIM domains 2 2 3
MIRT576413 Pla2g16 phospholipase A2, group XVI 2 2
MIRT576697 Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT606872 CHST11 carbohydrate sulfotransferase 11 2 4
MIRT606940 GFRA1 GDNF family receptor alpha 1 2 6
MIRT607025 ZEB1 zinc finger E-box binding homeobox 1 2 2
MIRT607028 PPY pancreatic polypeptide 2 4
MIRT607081 MITF melanogenesis associated transcription factor 2 3
MIRT607769 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2 6
MIRT607881 SATB1 SATB homeobox 1 2 2
MIRT607996 BTBD9 BTB domain containing 9 2 2
MIRT608124 TSC22D2 TSC22 domain family member 2 2 2
MIRT608132 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT608209 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT608337 SPN sialophorin 2 2
MIRT608416 SYNPO synaptopodin 2 5
MIRT608459 CD93 CD93 molecule 2 3
MIRT608555 SBK1 SH3 domain binding kinase 1 2 6
MIRT608585 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT608785 JAKMIP2 janus kinase and microtubule interacting protein 2 2 4
MIRT608791 CDH12 cadherin 12 2 2
MIRT608816 ONECUT3 one cut homeobox 3 2 6
MIRT608876 CNTF ciliary neurotrophic factor 2 6
MIRT608881 CLIC6 chloride intracellular channel 6 2 2
MIRT608894 ZNF860 zinc finger protein 860 2 2
MIRT608954 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609007 HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT609045 INVS inversin 2 4
MIRT619037 CASS4 Cas scaffolding protein family member 4 2 2
MIRT625226 RPSAP58 ribosomal protein SA pseudogene 58 2 4
MIRT625545 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit 2 2
MIRT627333 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT627954 NLK nemo like kinase 2 2
MIRT629280 UNC13A unc-13 homolog A 2 2
MIRT634982 TNFAIP8 TNF alpha induced protein 8 2 2
MIRT646129 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646370 SLC22A6 solute carrier family 22 member 6 2 2
MIRT652743 TGFA transforming growth factor alpha 2 4
MIRT653984 SEMA6A semaphorin 6A 2 2
MIRT660038 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT663504 NKAPL NFKB activating protein like 2 4
MIRT667117 OCIAD2 OCIA domain containing 2 2 2
MIRT683747 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT683922 SLC43A3 solute carrier family 43 member 3 2 2
MIRT684101 LHFP LHFPL tetraspan subfamily member 6 2 2
MIRT684224 FGF14 fibroblast growth factor 14 2 2
MIRT685560 SRD5A3 steroid 5 alpha-reductase 3 2 2
MIRT687408 NRXN1 neurexin 1 2 2
MIRT687467 NHSL2 NHS like 2 2 2
MIRT687695 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT688094 GLRA3 glycine receptor alpha 3 2 2
MIRT688255 FHL2 four and a half LIM domains 2 2 3
MIRT688851 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT700293 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT704679 CHST2 carbohydrate sulfotransferase 2 2 2
MIRT706392 PPID peptidylprolyl isomerase D 2 2
MIRT707388 SLC35F6 solute carrier family 35 member F6 2 2
MIRT707509 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT709808 AR androgen receptor 2 2
MIRT715491 MAZ MYC associated zinc finger protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6818-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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